DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004531 mmu-miR-135a* 26447 Poli gcggugcCGAGGUUAGGGAUAu ||| : ||||||| aaaaaauGCUAU-CUCCCUAUu 2 16 164 184 [mm9:18:70668384-70668404:-] 0.5801 141 7 -13.47 -1.0662 MIMAT0000152 mmu-miR-140* 26447 Poli ggcaccaagaugggACACCAu |||||| gaaaauagccauaaUGUGGUa 2 8 139 159 [mm9:18:70668409-70668429:-] 0.5854 120 6 -13.63 -0.2753 MIMAT0000217 mmu-miR-188-5p 26447 Poli ggGAGGUGGUACGUUCCCUac :||:| :| |||||| aaUUCUAGUA-CAAAGGGAaa 3 20 123 142 [mm9:18:70668426-70668445:-] 0.5977 125 0 -14.55 -0.1578 MIMAT0004545 mmu-miR-200b* 26447 Poli agguuacgacGGGU-CAUUCUAc || | ||||||| guguggaaauCCGAUGUAAGAUg 2 13 67 89 [mm9:18:70668479-70668501:-] 0.6100 143 7 -15.79 -1.0651 MIMAT0004616 mmu-miR-30c-1* 26447 Poli ccuCAUUUGUU--GGGAGAGGGuc ||||| || |: |||||| aauGUAAAAAAUGCUAUCUCCCua 3 20 159 182 [mm9:18:70668386-70668409:-] 0.5801 142 0 -15.14 -0.3805 MIMAT0005438 mmu-miR-30c-2* 26447 Poli ucuCAUUUGU--CGGAAGAGGGuc ||||| | ||: |||||| aauGUAAAAAAUGCUAUCUCCCua 3 20 159 182 [mm9:18:70668386-70668409:-] 0.5801 142 0 -16.70 -0.3805 MIMAT0004619 mmu-miR-200a* 26447 Poli aggucgugacAGGC--CAUUCUAc |||| ||||||| gguguggaaaUCCGAUGUAAGAUg 2 13 66 89 [mm9:18:70668479-70668502:-] 0.6100 147 7 -16.61 -1.0651 MIMAT0000551 mmu-miR-323-3p 26447 Poli ucuccagcUGGCA-CAUUACAc | :|| ||||||| auagccauAAUGUGGUAAUGUa 2 14 143 164 [mm9:18:70668404-70668425:-] 0.5854 144 7 -9.12 -1.1949 MIMAT0004640 mmu-miR-325 26447 Poli aacUAUCCUCCACGAGUUAUUu ||| | || ||||||| uuuAUAUCA-UUG-UCAAUAAa 2 20 193 212 [mm9:18:70668356-70668375:-] 0.5748 143 7 -6.46 -1.0984 MIMAT0004663 mmu-miR-200c* 26447 Poli ggUUUGUGACGACCCAUUCUGc |||: | | | ||||||: ggAAAU-CCGAU--GUAAGAUg 2 21 71 89 [mm9:18:70668479-70668497:-] 0.6100 127 0 -12.46 -0.1138 MIMAT0002889 mmu-miR-532-5p 26447 Poli ugCCAGGAUGUGAGUUCCGUac | | : |:| :|||||| aaGAUGUAAUAGAUAAGGCAaa 3 21 84 105 [mm9:18:70668463-70668484:-] 0.6100 128 0 -9.53 -0.1071 MIMAT0003492 mmu-miR-702 26447 Poli cucgccCCAUUUCCCACCCGu || ||| |||||| agauaaGGCAAA-AGUGGGCa 2 16 94 113 [mm9:18:70668455-70668474:-] 0.6100 121 6 -15.64 -0.1218 MIMAT0003502 mmu-miR-712 26447 Poli ccauggcgggcccaCUUCCUc |||||| aaaagugggcacagGAAGGAa 2 8 103 123 [mm9:18:70668445-70668465:-] 0.6100 120 6 -13.81 -0.1690 MIMAT0003508 mmu-miR-501-5p 26447 Poli aaagugggucccugUUUCCUaa |||||| uaucauugucaauaAAAGGAau 3 9 197 218 [mm9:18:70668350-70668371:-] 0.5748 120 0 -8.97 -0.1173 MIMAT0004863 mmu-miR-220 26447 Poli uucacagacUGUGACACCAcc |:| |||||| aaaauagccAUAAUGUGGUaa 3 13 140 160 [mm9:18:70668408-70668428:-] 0.5854 128 0 -8.36 -0.2359 MIMAT0004868 mmu-miR-343 26447 Poli agaccCGUGUACUUCCCUcu |:||| |||||| uucuaGUACA--AAGGGAaa 3 16 125 142 [mm9:18:70668426-70668443:-] 0.5977 128 0 -13.17 -0.1450 MIMAT0004891 mmu-miR-509-3p 26447 Poli gguAAUGUCUUUACAGUUAgu |||:| | ||||||| guuUUAUAUCAUUGUCAAUaa 3 19 191 211 [mm9:18:70668357-70668377:-] 0.5748 142 0 -8.44 -0.2561 MIMAT0004940 mmu-miR-511 26447 Poli acucacgucucguuUUCCGUa |||||| aagauguaauagauAAGGCAa 2 8 84 104 [mm9:18:70668464-70668484:-] 0.6100 120 6 -11.72 -0.1571 MIMAT0005292 mmu-miR-582-3p 26447 Poli aacccaAGUCAACAAGUUGUcc ||| || |||||| ggaauaUCA--UGGUCAACA-- 3 17 214 231 [mm9:18:70668337-70668354:-] 0.5748 129 0 -6.90 -0.1886 MIMAT0009405 mmu-miR-1941-5p 26447 Poli uucggagACAUGGU---CG-UAGAGGGa |||| | || ||||||| gugguaaUGUAAAAAAUGCUAUCUCCCu 2 18 154 181 [mm9:18:70668387-70668414:-] 0.5801 143 7 -19.86 -1.2284 MIMAT0009406 mmu-miR-1941-3p 26447 Poli uacccucuaugacgAUUCUAc |||||| guggaaauccgaugUAAGAUg 2 8 69 89 [mm9:18:70668479-70668499:-] 0.6100 120 6 -11.93 -0.1467 MIMAT0009408 mmu-miR-1943 26447 Poli agguccacgggucuaGGAGGGAa :|||||| auguaaaaaaugcuaUCUCCCUa 2 9 160 182 [mm9:18:70668386-70668408:-] 0.5801 124 6 -16.14 -0.4393 MIMAT0009439 mmu-miR-1966 26447 Poli cugagagaggacuCGGUCGAGGGAa ||:| |||||| uaauguaaaaaauGCUAUCUCCCUa 2 13 158 182 [mm9:18:70668386-70668410:-] 0.5801 124 6 -15.60 -0.4329 MIMAT0009456 mmu-miR-1839-5p 26447 Poli guucuggacAAGAUAGAUGGAa | |||||| ||| uguaaaaaaUGCUAUCUCCCUa 2 14 161 182 [mm9:18:70668386-70668407:-] 0.5801 125 0 -11.53 -0.1322 MIMAT0000147 mmu-miR-135a 26447 Poli agUGUAUCCUUAUUUUUCGGUAu ||| |||:| ||| |||||| guACAAAGGGA-AAAUAGCCAUa 2 22 130 151 [mm9:18:70668417-70668438:-] 0.5977 147 6 -21.16 -0.2015 MIMAT0000237 mmu-miR-204 26447 Poli uccguauccuacUGUUUCCCUu ||||||||| ggaaauucuaguACAAAGGGAa 2 11 120 141 [mm9:18:70668427-70668448:-] 0.5977 150 7 -15.61 -1.0937 MIMAT0000567 mmu-miR-329 26447 Poli uuUUUCCAAUCGACCCACACaa || || ||: |||||| gaAAUAGUCAGU--GGUGUGga 3 21 54 73 [mm9:18:70668495-70668514:-] 0.6100 129 0 -11.45 -0.1829 MIMAT0000612 mmu-miR-135b 26447 Poli agUGUAUCCUUACUUUUCGGUAu ||| |||:| || |||||| guACAAAGGGA-AAAUAGCCAUa 2 22 130 151 [mm9:18:70668417-70668438:-] 0.5977 139 6 -19.90 -0.2015 MIMAT0000668 mmu-miR-211 26447 Poli uccguuuccuacUGUUUCCCUu ||||||||| ggaaauucuaguACAAAGGGAa 2 11 120 141 [mm9:18:70668427-70668448:-] 0.5977 150 7 -15.56 -1.0913 MIMAT0004684 mmu-miR-362-3p 26447 Poli acUUAGGAACUUGUCCACACaa || : | |:: |||||| agAAAUAGUCAGU-GGUGUGga 3 21 53 73 [mm9:18:70668495-70668515:-] 0.6100 122 0 -10.33 -0.1882 MIMAT0001091 mmu-miR-410 26447 Poli uguccgguAGACACAAUAUAa ||||| |||||| cuauuauuUCUGUUUUAUAUc 2 14 180 200 [mm9:18:70668368-70668388:-] 0.5748 133 6 -8.52 -0.1524 MIMAT0003169 mmu-miR-539 26447 Poli ugugugguuccUAUUAAAGAgg || |||||| gcuaucucccuAUUAUUUCUgu 3 12 171 192 [mm9:18:70668376-70668397:-] 0.5748 127 0 -7.18 -0.2454 MIMAT0004853 mmu-miR-874 26447 Poli agcCAGGGAGCC--CGGUCCCGUc ||||| || ||||||||| ugaGUCCCCAGGUCGCCAGGGCAu 2 20 21 44 [mm9:18:70668524-70668547:-] 0.5635 166 7 -32.12 -0.3785 MIMAT0004854 mmu-miR-876-5p 26447 Poli auCACUAAGUGUCUCUUUAGGu || | | ::: :||||||| uaGUCAGUGGUGUGGAAAUCCg 2 21 58 79 [mm9:18:70668489-70668510:-] 0.6100 152 7 -17.64 -0.6642 MIMAT0004943 mmu-miR-653 26447 Poli gucaucucuaacaaAGUUGUg |||||| aaggaauaucauggUCAACA- 2 8 212 231 [mm9:18:70668337-70668356:-] 0.5748 120 6 -5.90 -0.2209

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G031102 Poli Mus musculus 26447

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Poli mmu-miR-1941-5p beg:168 end:182 pic:3' TTCGGAGACATGGTCG-TAGAGGGA 5'& || |||||||| &5' --------------GCTATCTCCCT 3' Poli mmu-miR-1949 beg:51 end:73 pic:3' TTGATACGACTG---TAGG-ACCATATC 5'& || .|| ||||.|.| &5' ---------GAAATAGTCAGTGGTGTGG 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Poli RAID00151263 mmu-miR-204-5p miRNA MIMAT0000237 Poli mRNA 26447 Prediction 0.1828 Poli RAID00169579 mmu-miR-653-5p miRNA MIMAT0004943 Poli mRNA 26447 Prediction 0.1828 Poli RAID00320453 mmu-miR-539-5p miRNA MIMAT0003169 Poli mRNA 26447 Prediction 0.1828 Poli RAID00448738 mmu-miR-325-3p miRNA MIMAT0004640 Poli mRNA 26447 Prediction 0.2202 Poli RAID00896260 mmu-miR-135b-5p miRNA MIMAT0000612 Poli mRNA 26447 Prediction 0.1828 Poli RAID01122750 mmu-miR-6360 miRNA MIMAT0025103 Poli mRNA 26447 Prediction 0.1828 Poli RAID01248094 mmu-miR-701-3p miRNA MIMAT0017257 Poli mRNA 26447 Prediction 0.1828 Poli RAID01428943 mmu-mir-325 miRNA MI0000597 Poli mRNA 26447 Prediction 0.1828 Poli RAID01592061 mmu-miR-135a-5p miRNA MIMAT0000147 Poli mRNA 26447 Prediction 0.1828 Poli RAID01786976 mmu-miR-3618-3p miRNA MIMAT0035717 Poli mRNA 26447 Prediction 0.1828 Poli RAID01905111 mmu-miR-329-3p miRNA MIMAT0000567 Poli mRNA 26447 Prediction 0.1828 Poli RAID01923092 mmu-miR-876-5p miRNA MIMAT0004854 Poli mRNA 26447 Prediction 0.1828 Poli RAID02613002 mmu-miR-410-3p miRNA MIMAT0001091 Poli mRNA 26447 Prediction 0.1828 Poli RAID02663223 mmu-miR-362-3p miRNA MIMAT0004684 Poli mRNA 26447 Prediction 0.1828 Poli RAID03108001 mmu-miR-211-5p miRNA MIMAT0000668 Poli mRNA 26447 Prediction 0.1828 Poli RAID03523229 mmu-miR-874-3p miRNA MIMAT0004853 Poli mRNA 26447 Prediction 0.1828