DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000371 mmu-miR-293 14794 Spsb2 ugUGAUGUUUGAGACG-CCGUGa | ||||:: | ||| ||||| guAGUACAGGGUGUGCUGGCACc 2 21 5 27 [mm9:6:124760422-124760444:+] 0.5153 132 0 -22.60 -0.1523 MIMAT0004574 mmu-miR-294* 14794 Spsb2 ucuaucccggagguAAAACUca |||||| ugggacaaagagguUUUUGAag 3 9 174 195 [mm9:6:124760591-124760612:+] 0.5481 120 0 -12.51 -0.1206 MIMAT0004647 mmu-miR-338-5p 14794 Spsb2 gugagucgUGGUC-CUAUAACAa |: || :|||||| aguaaaaaAUGAGAUGUAUUGU- 2 15 194 215 [mm9:6:124760611-124760632:+] 0.5451 125 6 -5.02 -0.1923 MIMAT0002108 mmu-miR-467a-1* 14794 Spsb2 cacauccacACACAUACAUAua || | |||||| aguaaaaaaUGAG-AUGUAUug 3 14 194 214 [mm9:6:124760611-124760631:+] 0.5451 123 0 -5.79 -0.1238 MIMAT0004189 mmu-miR-693-3p 14794 Spsb2 aauGUC-GGUGUAGACUUUCGACg :|| | || |: ||||||| gccUAGACAACUUUAAAAAGCUGg 2 21 61 84 [mm9:6:124760478-124760501:+] 0.5153 151 7 -12.27 -0.2577 MIMAT0003478 mmu-miR-467b* 14794 Spsb2 cacaaccacACACAUACAUAua || | |||||| aguaaaaaaUGAG-AUGUAUug 3 14 194 214 [mm9:6:124760611-124760631:+] 0.5451 123 0 -5.03 -0.1238 MIMAT0004837 mmu-miR-615-5p 14794 Spsb2 cuaggCUCGUGGCCCCUGGGGg |:| :|: ||||||| gggggGGGGGCU--GGACCCCu 2 18 94 113 [mm9:6:124760511-124760530:+] 0.5044 142 7 -22.49 -0.1188 MIMAT0004887 mmu-miR-467d* 14794 Spsb2 cacauccacACACAUACAUAua || | |||||| aguaaaaaaUGAG-AUGUAUug 3 14 194 214 [mm9:6:124760611-124760631:+] 0.5451 123 0 -5.79 -0.1238 MIMAT0005294 mmu-miR-467e* 14794 Spsb2 uauauccacACACAUACAUAua || | |||||| aguaaaaaaUGAG-AUGUAUug 3 14 194 214 [mm9:6:124760611-124760631:+] 0.5451 123 0 -5.03 -0.1238 MIMAT0005841 mmu-miR-669h-5p 14794 Spsb2 cgugaguUGAUAUGUGGGUA-CGUa |:|| ||| |||| ||| aaaugauAUUAAACA-CCAUGGCAg 2 18 148 171 [mm9:6:124760565-124760588:+] 0.5280 123 0 -13.16 -0.5431 MIMAT0009419 mmu-miR-669m 14794 Spsb2 uauacaaacacAC-CUACAUAua || ||||||| gaaguaaaaaaUGAGAUGUAUug 3 12 192 214 [mm9:6:124760609-124760631:+] 0.5451 126 0 -8.57 -0.1336 MIMAT0009423 mmu-miR-1952 14794 Spsb2 gucUUCCU-CCCACCUCu ::||| ||||||| cguGGGGACAGGUGGAGa 2 15 32 49 [mm9:6:124760449-124760466:+] 0.5153 145 7 -20.71 -0.2485 MIMAT0009426 mmu-miR-1955 14794 Spsb2 uuUUCGACGUCACGUAGGACCCUGa || | || ||| |||||||| uuAAACACCAUGGCAGCCUGGGACa 2 24 156 180 [mm9:6:124760573-124760597:+] 0.5280 167 7 -21.95 -0.7292 MIMAT0011217 mmu-miR-2141 14794 Spsb2 uugaaaagacuGUGGAGGa ||||||| cuggaccccuuCACCUCCc 2 9 104 122 [mm9:6:124760521-124760539:+] 0.5044 140 7 -14.62 -0.2792 MIMAT0000208 mmu-miR-10b 14794 Spsb2 guguuuaaGCCAAGAUGUCCCAu | || |||||||| ------ccCAGUAGUACAGGGUg 2 16 1 17 [mm9:6:124760418-124760434:+] 0.5505 151 7 -16.18 -0.3461 MIMAT0000648 mmu-miR-10a 14794 Spsb2 guguuuaagccuagAUGUCCCAu |||||||| ------cccaguagUACAGGGUg 2 10 1 17 [mm9:6:124760418-124760434:+] 0.5505 145 7 -14.88 -0.3489 MIMAT0000662 mmu-miR-216a 14794 Spsb2 agugucaacggucgACUCUAau |||||| uuugaaguaaaaaaUGAGAUgu 3 9 189 210 [mm9:6:124760606-124760627:+] 0.5549 120 0 -7.30 -0.2278 MIMAT0000747 mmu-miR-382 14794 Spsb2 gcuuaGGUGGUGCUUGUUGAAg |:: | : :||||||| acccgCUGGCCUAGACAACUUu 2 18 53 74 [mm9:6:124760470-124760491:+] 0.5153 145 7 -13.83 -0.3645 MIMAT0001418 mmu-miR-431 14794 Spsb2 acguacugccggaCGUUCUGu ||||||| ccuucucacaggaGCAAGACa 2 9 122 142 [mm9:6:124760539-124760559:+] 0.5096 140 7 -15.22 -1.0201 MIMAT0003130 mmu-miR-486 14794 Spsb2 gagccccGUCGAGUCAUGUCCu ||| :|||||||| -----ccCAG--UAGUACAGGg 2 16 1 15 [mm9:6:124760418-124760432:+] 0.5505 148 7 -18.55 -0.2757 MIMAT0004324 mmu-miR-181d 14794 Spsb2 uggguggcugUUGUUACU-UACAa || ||||| |||| uuuugaaguaAAAAAUGAGAUGUa 2 14 188 211 [mm9:6:124760605-124760628:+] 0.5549 121 0 -7.95 -1.2945

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G061104 Spsb2 Mus musculus 14794

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Spsb2 mmu-miR-10b beg:2 end:18 pic:3' GTGTTTAAGCCAAGATGTCCCAT 5'& || ||||||||. &5' ----------GTAGTACAGGGTG 3' Spsb2 mmu-miR-10a beg:6 end:18 pic:3' GTGTTTAAGCCTAGATGTCCCAT 5'& ||||||||. &5' --------------TACAGGGTG 3' Spsb2 mmu-miR-1955 beg:165 end:180 pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& ||| |||||||| &5' ------------GCAGCCTGGGAC- 3' Spsb2 mmu-miR-3099star beg:77 end:94 pic:3' GTTCCCGACCTTCCTTCGACC 5'& ||||| |||||||| &5' -----GCTGGT--GAAGCTGG 3' Spsb2 mmu-miR-431 beg:129 end:143 pic:3' ACGTACTGCCGGACGTTCTGT 5'& || |||||||| &5' --------GGA--GCAAGACA 3' Spsb2 mcmv-miR-m01-3 beg:98 end:119 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& |.||| | ||||||| &5' --GGGGCTGGACCC-CTTCACC- 3' Spsb2 mghv-miR-M1-2 beg:83 end:107 pic:3' TTTCTCCCCCTCTCCCCCAGAC 5'& .||| ||||.|.||||| ||| &5' GAAGCTGGGGGGGGGGGG-CTG 3' Spsb2 mmu-miR-1224 beg:109 end:131 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& ||.||||||||| |.||||| &5' CTTCACCTCCCC--TTCTCAC 3' Spsb2 mmu-miR-1894-5p beg:80 end:100 pic:3' TCTCCGTCCACC---ATCCCCTCTC 5'& |||| |.||||.|.| &5' -------GGTGAAGCTGGGGGGGGG 3' Spsb2 mmu-miR-1933-5p beg:152 end:170 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& |. |||||||||.| &5' --------ATTAAACACCATGGC- 3' Spsb2 mmu-miR-1937c beg:164 end:179 pic:3' ACCCCCGAGAAGGCCCTA 5'& ||| |.|||| &5' ----GGCAGC-CTGGGA- 3' Spsb2 mmu-miR-1948 beg:54 end:68 pic:3' GACATGCTCACGAGACGGATTT 5'& ||| |||||.| &5' ----------GCTG-GCCTAGA 3' Spsb2 mmu-miR-1952 beg:29 end:50 pic:3' GTCTTCCTC-CCACCTCT 5'& |. .||| |||||||| &5' CGTGGGGACAGGTGGAGA 3' Spsb2 mmu-miR-1983 beg:29 end:47 pic:3' TCTTTTGTACGAG-GTCCACTC 5'& |.|| ||||||. &5' ------CGTGGGGACAGGTGG- 3' Spsb2 mmu-miR-2141 beg:101 end:122 pic:3' TTGAAAAGACT-------GTGGAGGA 5'& |||. ||||||| &5' -------CTGGACCCCTTCACCTCC- 3' Spsb2 mmu-miR-214star beg:30 end:45 pic:3' CGTGTCGTTCACATCTGTCCGT 5'& ||| ||||||. &5' ---------GTGGGGACAGGT- 3' Spsb2 mmu-miR-292-3p beg:67 end:92 pic:3' TGTGAG--TTTTGGACCGCCGTGAAA 5'& |||. |||| ||||.| .|| &5' --ACTTTAAAAAGCTGGTGAAGCT-- 3' Spsb2 mmu-miR-3099star beg:89 end:108 pic:3' GTTCCCGACCTTCCTTCGACC 5'& ||| ||..||..||||| &5' ---GGG--GGGGGGGGGCTGG 3' Spsb2 mmu-miR-342-5p beg:18 end:30 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& |.||||||. &5' ------------TGGCACCCT- 3' Spsb2 mmu-miR-3470b beg:0 end:18 pic:3' GGTCGGACCAGATGTCTCACT 5'& ||||. |||||.||| &5' CCAGTAG----TACAGGGTG- 3' Spsb2 mmu-miR-375 beg:161 end:183 pic:3' AGTGCGC-TCGGCTTGCTTGTTT 5'& ||.| | |||| |.||||| &5' -CATG-GCAGCCTG--GGACAAA 3' Spsb2 mmu-miR-412 beg:30 end:48 pic:3' GCCGATCACCTG-GTCCACTT 5'& ||||. ||||||.| &5' ------GTGGGGACAGGTGGA 3' Spsb2 mmu-miR-453 beg:158 end:175 pic:3' ACGTTCGAGTGATACTCCGTTGGA 5'& ||| ||||.||| &5' --------CACCAT--GGCAGCCT 3' Spsb2 mmu-miR-469 beg:34 end:54 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& ||||| ..|| .||||||| &5' GGACA--------GGTG-GAGAGGCA 3' Spsb2 mmu-miR-483star beg:84 end:108 pic:3' TTCTGCCCTCCCCTCCTCACT 5'& ||| .|||.||||.|| ||. &5' AAGCTGGGGGGGGGGGGCTGG 3' Spsb2 mmu-miR-511 beg:32 end:54 pic:3' ACTCACGTCTCGTTTTCCGTA 5'& ||.| |||. .|.||||| &5' TGGGGACAGGTGGAGAGGCA- 3' Spsb2 mmu-miR-654-3p beg:129 end:145 pic:3' TTCCACTACCAGTCG-TCTGTAT 5'& || ||| ||||||| &5' --------GG--AGCAAGACATA 3' Spsb2 mmu-miR-669e beg:125 end:143 pic:3' TACTTGTACGTGTG--TGTTCTGT 5'& |||| .||||||| &5' ---------CACAGGAGCAAGACA 3' Spsb2 mmu-miR-689 beg:22 end:41 pic:3' CCTGGGGCGGCTCGCCCCTGC 5'& |||| || |.|||||| &5' --ACCCTACC--GTGGGGAC- 3' Spsb2 mmu-miR-697 beg:0 end:19 pic:3' AGAGGT-GTCCTGGTCCTACAA 5'& ||| .|| ||||.||| &5' ---CCAGTAGTA-CAGGGTGT- 3' Spsb2 mmu-miR-877star beg:89 end:110 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& |||.||.|||.| |||| &5' -GGGGGGGGGGGGCT--GGAC- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Spsb2; Grcc9; Ssb2 mmu-miR-10a 8 19 GUGUUUAAGCCUAGAUGUCCCAU- ||||||||: -------------GUACAGGGUGU Spsb2; Grcc9; Ssb2 mmu-miR-129-3p 88 107 UACGAAAAACCCCAUUCCCGAA ||| |||| :||||| -AGCUGG--GGGGGGGGGGCUG Spsb2; Grcc9; Ssb2 mmu-miR-133a 87 109 UGUCGACCAACUUCCCCUGGUU- |||||| | ||||:|::: -AAGCUGGGGGGGGGGGGCUGGA Spsb2; Grcc9; Ssb2 mmu-miR-133b 87 109 AUCGACCAACUUCCCCUGGUU- |||||| | ||||:|::: AAGCUGGGGGGGGGGGGCUGGA Spsb2; Grcc9; Ssb2 mmu-miR-136 27 50 AGGUAGUAGUUUUGUUUACCUCA |:| |:| :::|||::||||| CCUACCGUGGGGACAGGUGGAGA Spsb2; Grcc9; Ssb2 mmu-miR-143 100 131 ACUCGAUGUCACGAAGU--------AGAGU- |:|||: | ||||| ||||| GGGGCUGGACCCCUUCACCUCCCCUUCUCAC Spsb2; Grcc9; Ssb2 mmu-miR-145 91 111 UUCCCUAAGGACCCUUUUGACCUG- |||: ||| ::|||||| -UGGGGG----GGGGGGGCUGGACC Spsb2; Grcc9; Ssb2 mmu-miR-149 87 110 CCUC-ACUUCUGUGCCUCGGUCU- || || |: : ||:||::|| -AAGCUGGGGGGGGGGGGCUGGAC Spsb2; Grcc9; Ssb2 mmu-miR-150 79 105 GUGACCAUGU---UCCCAACCCUCU- :|||||: :||| |||:|: AGCUGGUGAAGCUGGGGGGGGGGGGC Spsb2; Grcc9; Ssb2 mmu-miR-15b 4 26 ACAUU-UGGUACUACACGA-CGAU |||: || |:|||||| || AGUAGUACAG-GGUGUGCUGGCA- Spsb2; Grcc9; Ssb2 mmu-miR-16 1 26 GCGGUUAUAAA----UGCACGA-CGAU |||:|| ::||||| || -CCCAGUAGUACAGGGUGUGCUGGCA- Spsb2; Grcc9; Ssb2 mmu-miR-195 1 26 CGGUUAUAAAG----ACACGA-CGAU |||:|| |||||| || CCCAGUAGUACAGGGUGUGCUGGCA- Spsb2; Grcc9; Ssb2 mmu-miR-199a 36 63 -CUUGUCCAUCAGACUU-----GUGACCC |:||||||:| ||: |:|||| GGGACAGGUGGA--GAGGCACCCGCUGGC Spsb2; Grcc9; Ssb2 mmu-miR-199a* 13 37 UUGGUUACACGUCUG----AUGACAU- ::||||| |:| ||| ||: ---GGGUGUGCUGGCACCCUACCGUGG Spsb2; Grcc9; Ssb2 mmu-miR-199b 36 63 -CUUGUCCAUCAGAUUUG----UGACCC |:||||||:| |::| :|||| GGGACAGGUGGAG-AGGCACCCGCUGGC Spsb2; Grcc9; Ssb2 mmu-miR-293 5 28 UGUGAUGUUUGAGACG-CCGUGA :| ||||:: | ||| ||||| GUAGUACAGGGUGUGCUGGCACC Spsb2; Grcc9; Ssb2 mmu-miR-296 88 107 -UGUCCUAACUCCCCCCCGGGA :| || |:||||||||: AGCUGGG--GGGGGGGGGCUG- Spsb2; Grcc9; Ssb2 mmu-miR-324-3p 1 48 -GGUCG---------------UCGUGG------ACCCCG- UCACC ||||: :||||| ||||| :|||| CCCAGUAGUACAGGGUGUGCUGGCACCCUACCGUGGGGACAGGUGGA Spsb2; Grcc9; Ssb2 mmu-miR-328 81 109 UGCCUU-----CCCGUCUCUCCCGGUC- :|| ||| :|:|:||||::| CUGGUGAAGCUGGGGGGGGGGGGCUGGA Spsb2; Grcc9; Ssb2 mmu-miR-331 89 106 AAGAUCCUAUCCGGGUCCCCG- ||:||: :|| :||||| -GCUGGGG-GGG---GGGGGCU Spsb2; Grcc9; Ssb2 mmu-miR-337 91 110 UUUCCGUAGUAUAUCCUCGACUU- ::|| : :||:||||:| UGGGGGGG-----GGGGGCUGGAC Spsb2; Grcc9; Ssb2 mmu-miR-338 67 96 AGUUGU--UUUAGUGACUA---CGACCU- |||| ||| :|||:| |||||: ACAACUUUAAAAAGCUGGUGAAGCUGGGG Spsb2; Grcc9; Ssb2 mmu-miR-340 184 211 -CCGAU-AUUUCAUUG---ACUCUGCCU ||:| |:|||||| |||||:| AGGUUUUUGAAGUAAAAAAUGAGAUGU- Spsb2; Grcc9; Ssb2 mmu-miR-346 41 71 -UCUCCG-UCCGUGAGC--CCG--UCUGU- :| || |||||| || ||| ||||| AGGUGGAGAGGCACCCGCUGGCCUAGACAA Spsb2; Grcc9; Ssb2 mmu-miR-378 8 47 UGUGUCC---------------UGG-ACCUCAGUCCUC- :||||| ||| |||:| |||| | GUACAGGGUGUGCUGGCACCCUACCGUGGGGACAGGUGG Spsb2; Grcc9; Ssb2 mmu-miR-382 47 76 GCUUAGGUGGUGC--------UUGUUGAAG- ||: |||| || :|||||||: AGAGG-CACC-CGCUGGCCUAGACAACUUUA Spsb2; Grcc9; Ssb2 mmu-miR-412 20 50 UGCCGAU------CACCUG-GUCCACUUCA :||| ||||: ||||||:|| CUGGCACCCUACCGUGGGGACAGGUGGAGA Spsb2; Grcc9; Ssb2 mmu-miR-469 21 55 CCUGUGG--------UUCUAGUUACUUUCUCCGU- |:|||| ::|| ::||:| |||||| UGGCACCCUACCGUGGGGACAGGUGGA-GAGGCAC Spsb2; Grcc9; Ssb2 mmu-miR-483 86 109 UGUUCUGCCCUCCCCUCCUCACU- ||| :|||:||||:||: ||: -GAAGCUGGGGGGGGGGGGCUGGA Spsb2; Grcc9; Ssb2 mmu-miR-484 94 112 UAGCCCUCCCCUGACUCGGACU |||:||||:|||: || --GGGGGGGGGGCUGGACCC-- Spsb2; Grcc9; Ssb2 mmu-miR-485-5p 160 176 CUUAAGUAGUGCCGGUCGGAGA || ||:||| ||||| ----ACACCAUGGC-AGCCUG- Spsb2; Grcc9; Ssb2 mmu-miR-497 10 26 AUGUUUGGUGUCACACGA-CGAC || :||||||| || ------ACAGGGUGUGCUGGCA- Spsb2; Grcc9; Ssb2 mmu-miR-500 19 49 -GACU-UGGGA----ACGG--GUCCACGUA |||: ||||| || |||||| | GCUGGCACCCUACCGUGGGGACAGGUGGAG Spsb2; Grcc9; Ssb2 mmu-miR-540 39 66 GGUCCUAG---CUGGA---GACUGGA- |||| |:| |||:||| ACAGGUGGAGAGGCACCCGCUGGCCUA Spsb2; Grcc9; Ssb2 mmu-miR-615 91 110 UUCUCCCUCUGGGUCCGAGCCU- :|:|||:|: :|||| ||| UGGGGGGGGG---GGGCU-GGAC Spsb2; Grcc9; Ssb2 mmu-miR-668 32 55 CCAUCACCCG-GCUCGGCUCACUGU- ||||| | :|: ||| |:|| ---CGUGGGGACAGGUGGAGAGGCAC Spsb2; Grcc9; Ssb2 mmu-miR-674* 83 108 AACAA---GACUCUA--CCCUCGACAC || |||:|: |||:|||| -GGUGAAGCUGGGGGGGGGGGGCUGG- Spsb2; Grcc9; Ssb2 mmu-miR-675-5p 88 120 -UGACA-------CCCGGGAAAGGC--GUGGU :||| ||||: || |||| AGCUGGGGGGGGGGGGCUGGACCCCUUCACCU Spsb2; Grcc9; Ssb2 mmu-miR-681 78 108 -UCGACGGA--CGG-----UCGCUCCGAC- ||||| : ||: :| |:||||| AAGCUGGUGAAGCUGGGGGGGGGGGGCUGG Spsb2; Grcc9; Ssb2 mmu-miR-689 21 42 -CC-UGGGGCGGCUCGCCCCUGC || ||||: || |:|||||| UGGCACCCUACC--GUGGGGACA Spsb2; Grcc9; Ssb2 mmu-miR-690 33 76 AAACCAA----CAC--------------UCGGAUCG---GAAA ||| ||| :|||||| |||| -GUGGGGACAGGUGGAGAGGCACCCGCUGGCCUAGACAACUUUA Spsb2; Grcc9; Ssb2 mmu-miR-699 35 66 GCUCGGUCCAG-----CGUGA-----CGGA- |:| ||||| |||| |||| GGGGACAGGUGGAGAGGCACCCGCUGGCCUA Spsb2; Grcc9; Ssb2 mmu-miR-700 41 62 -CCACCUGAGCCAAGGGCGCAC- |||||| || ||||| || AGGUGGAGA-GGCACCCGC-UGG Spsb2; Grcc9; Ssb2 mmu-miR-702 87 106 CUCG-CCCCAUUUCCCACCCGU ||| |||| :||| |||| AAGCUGGGGG--GGGG-GGGCU Spsb2; Grcc9; Ssb2 mmu-miR-705 106 126 AC-GGGUGGGGUGGAGGGUGG- | ||| |::|||||||| |: GGACCC-CUUCACCUCCC-CUU Spsb2; Grcc9; Ssb2 mmu-miR-718 21 50 GCUGUGGGCCGGC--------CCGCCUUC |:||||| ||| ||:|||: UGGCACCCUACCGUGGGGACAGGUGGAGA Spsb2; Grcc9; Ssb2 mmu-miR-761 32 62 ACACA---GUCAAA------GUGGGACGACG ||| ||| ||||| |||| CGUGGGGACAGGUGGAGAGGCACCC-GCUGG Spsb2; Grcc9; Ssb2 mmu-miR-763 54 86 CGGUGACCAA-------GAAGGG--UCGACC- ||:|||| |||: |||||| CCCGCUGGCCUAGACAACUUUAAAAAGCUGGU Spsb2; Grcc9; Ssb2 mmu-miR-764-3p 38 66 -UGUCAAC---------GGUGAUACCGGAGGA |||| || ||:| |||||| GACAGGUGGAGAGGCACCCGC--UGGCCUA-- Spsb2; Grcc9; Ssb2 mmu-miR-770-3p 49 67 GGUCGAGGUGCAGUCCGGGUGC :|| || || | ||||:| -AGGCACC-CG-CUGGCCUAG- Spsb2; Grcc9; Ssb2 mmu-miR-382 67 74 G---------------CUUAGGUGGUGC--------UUGUUGAAG ||: |||| || :|||||||: CGUGGGGACAGGUGGAGAGG-CACC-CGCUGGCCUAGACAACUUUA Spsb2; Grcc9; Ssb2 mmu-miR-412 83 90 U----------GCCG-AUCACCUGGU---------CCACUUCA :||| ||| ||: ||||||| GAGGCACCCGCUGGCCUAGACAACUUUAAAAAGCUGGUGAAGC Spsb2; Grcc9; Ssb2 mmu-miR-431 135 142 ----------------------GGACGUACUGCCGGACGUUCUGU ||| | || |||||||| GGGGCUGGACCCCUUCACCUCCCCUUCUCACAGGA--GCAAGACAU Spsb2; Grcc9; Ssb2 mmu-miR-10a 1 17 guguuuaagccuagAUGUCCCAu |||||||| ------cccagtagTACAGGGTg Spsb2; Grcc9; Ssb2 mmu-miR-129-3p 87 106 UACGAAAAACCCCAUUCCCGAa | || | |||| ::||||| AAGC--TGGGGGGGGGGGGCTg Spsb2; Grcc9; Ssb2 mmu-miR-133a 86 107 ugUCGACCAACUUCCCCUGguu |||||| |::||||:| gaAGCTGGGGGGGGGGGGCtgg Spsb2; Grcc9; Ssb2 mmu-miR-149 86 108 CCUC-ACUUCUGUGCCUCGGUCU | || ||::|: : ||:||::|| GAAGCTGGGGGGGGGGGGCTGGA Spsb2; Grcc9; Ssb2 mmu-miR-199a 37 62 CUUGUCCAUCAGACU---UGUGACCc |:||||||:| |: |:|||| GGACAGGTGGAGAGGCACCCGCTGGc Spsb2; Grcc9; Ssb2 mmu-miR-199a* 10 35 uugguuACACGUCU----GAUGACAu ||||| |: |||| || acagggTGTGCTGGCACCCTACCGTg Spsb2; Grcc9; Ssb2 mmu-miR-199b 37 62 CUUGUCCA----UCAGAUUUGUGACCc |:|||||| || | | |:|||| GGACAGGTGGAGAGGC-ACCCGCTGGc Spsb2; Grcc9; Ssb2 mmu-miR-296 89 107 uGUCCUAACUCCCCCCCGgga | ||: |:|||||||| gCTGGG--GGGGGGGGGCtgg Spsb2; Grcc9; Ssb2 mmu-miR-324-3p 20 46 GGUCGUCG--UGG-ACCCC-GU-CACC |::||| | ||| ||||| || |||| CTGGCACCCTACCGTGGGGACAGGTGG Spsb2; Grcc9; Ssb2 mmu-miR-328 83 107 ugcCUU---CCCGUCUCUCCCGGUC ||| ||| :|:|:||||::| ggtGAAGCTGGGGGGGGGGGGCTGG Spsb2; Grcc9; Ssb2 mmu-miR-331 79 97 aaGAUCCUAUCCGGGUCCCCg ||:| : || |::|||| agCTGGTGAAG--CTGGGGGg Spsb2; Grcc9; Ssb2 mmu-miR-337 86 108 uuuccguaguauauCCUCGACUU ||:||||:| gaagctggggggggGGGGCTGGA Spsb2; Grcc9; Ssb2 mmu-miR-340 185 211 CC-GAUAUUUCA---UUGACUCUGCcu || :| |:|||| || |||||:| GGTTTTTGAAGTAAAAAATGAGATGta Spsb2; Grcc9; Ssb2 mmu-miR-346 45 69 uCUCCGUCCGUGAGC--CCG--UCUGU ||| |||||| || ||| ||||| gGAG--AGGCACCCGCTGGCCTAGACA Spsb2; Grcc9; Ssb2 mmu-miR-378 23 45 uGUGUCCUGG-ACCUCAGUCCuc ||| ||| |||:| |||| gCACCCTACCGTGGGGACAGGtg Spsb2; Grcc9; Ssb2 mmu-miR-382 50 74 gCUUAGGUGGU--GCU-UGUUGAAg | | ||:|:: | | ||||||| gGCACCCGCTGGCCTAGACAACTTt Spsb2; Grcc9; Ssb2 mmu-miR-412 24 49 ugccGAU--CA-CCUGGUCCACUUCa ||| || ||: ||||||:|| caccCTACCGTGGGGACAGGTGGAGa Spsb2; Grcc9; Ssb2 mmu-miR-412 54 90 uGCCGAUC--ACCUG------------GUCCACUUCa | |||:| | ||| | ||||||| cCCGCTGGCCTAGACAACTTTAAAAAGCTGGTGAAGc Spsb2; Grcc9; Ssb2 mmu-miR-431 122 142 GGACGUACUG-CCGGACGUUCUGU ||| | | || || |||||||| CCTTC-TCACAGG--AGCAAGACA Spsb2; Grcc9; Ssb2 mmu-miR-469 22 53 CC-UG---UGG--UUCUAGUUACUUUCUCCGU || || ||| ::|: ||: ::||||||| GGCACCCTACCGTGGGGACAGGTGGAGAGGCA Spsb2; Grcc9; Ssb2 mmu-miR-483 85 107 ugUUCUGCCCUCCCCUCCUCACu ||| :|||:||||:||: || tgAAGCTGGGGGGGGGGGGCTGg Spsb2; Grcc9; Ssb2 mmu-miR-484 88 107 UAGCCCUCCCCUGACUCGGACu | | ||:||||: |:| ||| AGCTGGGGGGGG--GGGGCTGg Spsb2; Grcc9; Ssb2 mmu-miR-485-5p 152 176 CU-UAA---GUAGUGCCGGUCGGAga || ||| || ||:|| |||||| GATATTAAACACCATGG-CAGCCTgg Spsb2; Grcc9; Ssb2 mmu-miR-497 4 25 auguuugGUGUCACACGACgac || :|||||||| agtagtaCAGGGTGTGCTGgca Spsb2; Grcc9; Ssb2 mmu-miR-500 20 48 GACU-UGGGAACGG-------GUCCACGUa |||: |||| | || |||||| | CTGGCACCC-TACCGTGGGGACAGGTGGAg Spsb2; Grcc9; Ssb2 mmu-miR-540 47 64 ggUCCUAGCUGGAGACUGGA ||| | || |||:||| agAGG--CACCCGCTGGCCT Spsb2; Grcc9; Ssb2 mmu-miR-615 87 108 UUC-UCCCUCUGGGUCCGAGCCU ||| |||:|: :|||| ||| AAGCTGGGGGGGGGGGGCT-GGA Spsb2; Grcc9; Ssb2 mmu-miR-668 29 53 ccauCA-CCCGGCUCGGCUCACUGU || ||| | :|: ||| |:|| taccGTGGGGACAGGTGGAGAGGCA Spsb2; Grcc9; Ssb2 mmu-miR-674* 87 108 aaCAAGACUCUACCCUCGACac | | |:|: |||:|||| aaGCTGGGGGGGGGGGGCTGga Spsb2; Grcc9; Ssb2 mmu-miR-675-5p 101 124 ugacACCCGGGAAA--GGCGUGGu ||| ||| || || | || gggcTGGACCCCTTCACCTCCCCt Spsb2; Grcc9; Ssb2 mmu-miR-681 88 106 UCGACGGACGGUCGCUCCGAC ||||| | :| |:||||| AGCTG--GGGGGGGGGGGCTG Spsb2; Grcc9; Ssb2 mmu-miR-689 22 41 CC-UGGGGCGGCUCGCCCCUGc || ||||: || |:|||||| GGCACCCTACC--GTGGGGACa Spsb2; Grcc9; Ssb2 mmu-miR-690 39 66 aaaCCAACACUC-----G-GAUCGGAaa ||| | ||| | ||:|||| acaGGTGGAGAGGCACCCGCTGGCCTag Spsb2; Grcc9; Ssb2 mmu-miR-699 45 64 gCUCGGUCC-AGCGUGA-CGGA ||| ||| | |:|| |||| gGAG--AGGCACCCGCTGGCCT Spsb2; Grcc9; Ssb2 mmu-miR-700 42 61 CCACCUGAGCCAAGGGCGcac |||||| || ||||| GGTGGA-GAGGCACCCGCtgg Spsb2; Grcc9; Ssb2 mmu-miR-761 42 61 aCACAGUCAAAGUGGGACGACg ||| || || || |||| gGTG-GAGAGGCA-CCCGCTGg Spsb2; Grcc9; Ssb2 mmu-miR-763 38 61 CGGU-GACCAAGAAG-GGUCGACC | || ||| | || ||||| GACAGGTGGAGAGGCACCCGCTGG Spsb2; Grcc9; Ssb2 mmu-miR-764-3p 45 67 ugUCAACG-GUGAUACCGGAgga || || | | |||||| ggAGAGGCACCCGCTGGCCTaga Spsb2; Grcc9; Ssb2 mmu-miR-770-3p 48 67 gguCGAGGUGCAGUCCGGGUgc || || || | ||||:| gagGCACC-CG-CTGGCCTAga

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Spsb2 RAID00083110 mmu-miR-431-5p miRNA MIMAT0001418 Spsb2 mRNA 14794 Prediction 0.1828 Spsb2 RAID00284053 mmu-miR-216a-5p miRNA MIMAT0000662 Spsb2 mRNA 14794 Prediction 0.1828 Spsb2 RAID00862440 mmu-miR-181d-5p miRNA MIMAT0004324 Spsb2 mRNA 14794 Prediction 0.1828 Spsb2 RAID00959370 mmu-miR-3971 miRNA MIMAT0019356 Spsb2 mRNA 14794 Prediction 0.1828 Spsb2 RAID02110651 mmu-miR-882 miRNA MIMAT0004847 Spsb2 mRNA 14794 Prediction 0.1828 Spsb2 RAID02337316 mmu-miR-10b-5p miRNA MIMAT0000208 Spsb2 mRNA 14794 Prediction 0.1828 Spsb2 RAID02447986 mmu-miR-10a-5p miRNA MIMAT0000648 Spsb2 mRNA 14794 Prediction 0.1828 Spsb2 RAID02602042 mmu-miR-6413 miRNA MIMAT0025166 Spsb2 mRNA 14794 Prediction 0.1828 Spsb2 RAID03312369 mmu-miR-3108-3p miRNA MIMAT0014948 Spsb2 mRNA 14794 Prediction 0.1828 Spsb2 RAID03679599 mmu-miR-382-5p miRNA MIMAT0000747 Spsb2 mRNA 14794 Prediction 0.1828 Spsb2 RAID03889248 mmu-miR-486a-5p miRNA MIMAT0003130 Spsb2 mRNA 14794 Prediction 0.1828