DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 68083 Pak1ip1 cgaCGUUUGUAGGCUGACUUUc ||||::| |||||| agaGCAAGUAAAGAUCUGAAAa 2 20 228 249 [mm9:13:41108346-41108367:+] 0.5169 123 6 -13.45 -0.1397 MIMAT0004531 mmu-miR-135a* 68083 Pak1ip1 gcGGUGCCGAGGUUAGGGAUAu ||| :||: ||||||| ucCCAGAUUUCUCCUCCCUAUc 2 21 14 35 [mm9:13:41108132-41108153:+] 0.5214 152 7 -17.51 -1.0277 MIMAT0004536 mmu-miR-151-5p 68083 Pak1ip1 ugaucugacacucGAGGAGcu |||||| aaaucccagauuuCUCCUCcc 3 9 11 31 [mm9:13:41108129-41108149:+] 0.5214 120 0 -11.16 -0.2776 MIMAT0004542 mmu-miR-191* 68083 Pak1ip1 cccuugcuuuagguuCACGUCg |||||| ccuuccguagaaaauGUGCAGc 2 8 87 108 [mm9:13:41108205-41108226:+] 0.5309 120 6 -14.43 -0.1369 MIMAT0000249 mmu-miR-30e* 68083 Pak1ip1 cgacauuuguaggcuGACUUUc |||||| agagcaaguaaagauCUGAAAa 2 8 228 249 [mm9:13:41108346-41108367:+] 0.5169 120 6 -12.70 -0.1397 MIMAT0004575 mmu-miR-295* 68083 Pak1ip1 cuucacacggGGUGUAAACUca ::::|||||| gaucugaaaaUUGUAUUUGAaa 3 13 240 261 [mm9:13:41108358-41108379:+] 0.5169 124 0 -6.57 -0.4143 MIMAT0004580 mmu-miR-34c* 68083 Pak1ip1 ggaCCGACA-CACCAAUCACUAa | :||| | ||||||| auaGAUUGUAAUAUAUAGUGAUu 2 20 188 210 [mm9:13:41108306-41108328:+] 0.5278 142 7 -11.20 -1.1522 MIMAT0004581 mmu-miR-34b-3p 68083 Pak1ip1 cuACCGUCACCUCAAUCACUAa | |:| | | ||||||| gaUUGUAAU--AUAUAGUGAUu 2 21 191 210 [mm9:13:41108309-41108328:+] 0.5278 141 7 -8.86 -1.1562 MIMAT0004620 mmu-let-7a* 68083 Pak1ip1 ccuuucugucAUCUAACA-UAUc |||||||| ||| cauuuuauuaUAGAUUGUAAUAu 2 13 179 201 [mm9:13:41108297-41108319:+] 0.5278 124 0 -9.03 -1.0619 MIMAT0005439 mmu-let-7c-2* 68083 Pak1ip1 ccuuucugucAUCUAACA-UAUc |||||||| ||| cauuuuauuaUAGAUUGUAAUAu 2 13 179 201 [mm9:13:41108297-41108319:+] 0.5278 124 0 -9.03 -1.0619 MIMAT0004623 mmu-let-7f* 68083 Pak1ip1 cccuuccguUAUCUAACA-UAUc ||||||||| ||| cauuuuauuAUAGAUUGUAAUAu 2 14 179 201 [mm9:13:41108297-41108319:+] 0.5278 129 0 -10.25 -1.0696 MIMAT0004625 mmu-miR-16* 68083 Pak1ip1 agUCGUCGUGUCAGUUAUGACc ||:| :|| ||||||| uuAGUAAUAC-CAAAAUACUGu 2 21 179 199 [mm9:13:41103688-41103708:+] 0.4440 146 7 -13.65 -0.8964 MIMAT0004628 mmu-miR-21* 68083 Pak1ip1 cugucgGGUAGCUG-ACGACAAc |::|: | ||||||| aaaauaCUGUUUCCAUGCUGUUc 2 17 190 212 [mm9:13:41103699-41103721:+] 0.4554 143 7 -10.58 -0.4920 MIMAT0000569 mmu-miR-330* 68083 Pak1ip1 agAGACGUCCGGGACACGAAACg ||| :||| : |||||||| gcUCUUUAGG--UGGUGCUUUGu 2 22 124 144 [mm9:13:41108242-41108262:+] 0.5278 158 7 -25.73 -0.6355 MIMAT0004666 mmu-miR-33* 68083 Pak1ip1 cacuaCGUGACACCUUUGUAAc |||| | ||||||| uguugGCACCGAUAAAACAUUa 2 18 122 143 [mm9:13:41103631-41103652:+] 0.7308 153 7 -9.73 -1.2427 MIMAT0000745 mmu-miR-380-3p 68083 Pak1ip1 uuCUAC-ACCUGGUAUGAU-GUAu | || | | ||||||| ||| auGCUGUUCCAACAUACUACCAUu 2 21 204 227 [mm9:13:41103713-41103736:+] 0.4726 123 0 -10.86 -0.5046 MIMAT0001090 mmu-miR-409-3p 68083 Pak1ip1 ucccCAA--GUGGCU-CGUUGUAAg ||| |||||| |||||| gucuGUUGGCACCGAUAAAACAUUa 2 19 119 143 [mm9:13:41103628-41103652:+] 0.7308 128 6 -16.94 -0.1787 MIMAT0001093 mmu-miR-411* 68083 Pak1ip1 ccaaucaccuggcaCAAUGUau |||||| aaacauuaagguaaGUUACAau 3 9 136 157 [mm9:13:41103645-41103666:+] 0.7308 120 0 -6.97 -0.1816 MIMAT0002104 mmu-miR-463* 68083 Pak1ip1 uacuacCUGUUGUUUAA-UCCAu ||:|| | ||| |||| ggcaccGAUAAAACAUUAAGGUa 2 17 126 148 [mm9:13:41103635-41103657:+] 0.7308 124 0 -9.58 -1.2256 MIMAT0002107 mmu-miR-466a-3p 68083 Pak1ip1 agaauacacacgcacaUACAUAu |||||| guuacaaucuuugcucAUGUAUc 2 8 150 172 [mm9:13:41103659-41103681:+] 0.5874 120 6 -5.82 -0.1439 MIMAT0002112 mmu-miR-471 68083 Pak1ip1 cacuuuUCGUGAUAUGAUGCAu ||| ||: ||||||| gaggccAGC-CUGGACUACGUa 2 17 410 430 [mm9:13:41103919-41103939:+] 0.4950 154 7 -20.13 -0.3400 MIMAT0004782 mmu-miR-483 68083 Pak1ip1 gaGGGAAGAGAAGAGGGCAGAa ||:|||| | | ||||||| uuCCUUUCUAUCCACCCGUCUg 2 21 84 105 [mm9:13:41103593-41103614:+] 0.7308 172 7 -26.32 -0.8692 MIMAT0003173 mmu-miR-547 68083 Pak1ip1 gagugaguuucuacAUGGUUc |||||| cuuuuacuuaguaaUACCAAa 2 8 172 192 [mm9:13:41103681-41103701:+] 0.4440 120 6 -13.01 -0.1458 MIMAT0003186 mmu-miR-369-3p 68083 Pak1ip1 uuUCUAGUUGGUACAUAAUAa |||| ::| | |||||| gcAGAU-GGCAUUUUAUUAUa 2 20 171 190 [mm9:13:41108289-41108308:+] 0.5278 125 6 -5.62 -0.1287 MIMAT0003190 mmu-miR-291b-3p 68083 Pak1ip1 uguuUGUUUUACCUACGU-GAAa | |||||| |||| ||| ccguAGAAAAUG--UGCAGCUUa 2 19 91 111 [mm9:13:41108209-41108229:+] 0.5309 123 0 -9.76 -1.0880 MIMAT0003373 mmu-miR-302b* 68083 Pak1ip1 ucuuuCGUAAGGGUACAAUUUca || || :: ||||||| gugguGCUUUGUUUUGUUAAAug 3 19 133 155 [mm9:13:41108251-41108273:+] 0.5278 138 0 -7.51 -0.1403 MIMAT0003375 mmu-miR-302c* 68083 Pak1ip1 cguCCAUUGG--GGUACAAUUUcg |||: :: :: ||||||| gguGGUGCUUUGUUUUGUUAAAug 3 20 132 155 [mm9:13:41108250-41108273:+] 0.5278 126 0 -11.26 -0.1459 MIMAT0004822 mmu-miR-770-5p 68083 Pak1ip1 gcacCGGGUCUGUGCACCACGa ||:| :| ||||||| aaccGCUC-UUUAGGUGGUGCu 2 19 120 140 [mm9:13:41108238-41108258:+] 0.5278 144 7 -21.07 -0.9954 MIMAT0004188 mmu-miR-802 68083 Pak1ip1 uuccuacuUAGAAACAAUGACu ||:| ||||||| uuucagccAUUUAAGUUACUGu 2 15 246 267 [mm9:13:41103755-41103776:+] 0.4882 150 7 -9.79 -0.9468 MIMAT0004823 mmu-miR-666-3p 68083 Pak1ip1 ucguccgcuagugcgACGUCGg |||||| cuuccguagaaaaugUGCAGCu 2 8 88 109 [mm9:13:41108206-41108227:+] 0.5309 120 6 -14.63 -0.1523 MIMAT0003898 mmu-miR-760 68083 Pak1ip1 aggGGUGUC--UGGGUCUCGgc |: :|| :::|||||| uuaCUUUAGCUGUUCAGAGCaa 3 18 213 234 [mm9:13:41108331-41108352:+] 0.5278 124 0 -16.05 -0.1074 MIMAT0004827 mmu-miR-297b-3p 68083 Pak1ip1 auacccauacacacaUACAUAu |||||| uuacaaucuuugcucAUGUAUc 2 8 151 172 [mm9:13:41103660-41103681:+] 0.5874 120 6 -3.25 -0.1453 MIMAT0003494 mmu-miR-704 68083 Pak1ip1 gauccucGUCUCGUGUACAGa :||:| ||||||| uuccuuuUAGGGGACAUGUCa 2 15 61 81 [mm9:13:41103570-41103590:+] 0.7308 154 7 -17.08 -0.7605 MIMAT0003781 mmu-miR-676* 68083 Pak1ip1 cguucaggauuccaACAUCUCa ||||||| uacuaccauuuccgUGUAGAGc 2 9 218 239 [mm9:13:41103727-41103748:+] 0.4726 140 7 -13.58 -0.1275 MIMAT0004839 mmu-miR-743b-5p 68083 Pak1ip1 acuaccuguggUC-AGACUUgu || |||||| agagcaaguaaAGAUCUGAAaa 3 11 228 249 [mm9:13:41108346-41108367:+] 0.5169 121 0 -9.03 -0.1163 MIMAT0004841 mmu-miR-871 68083 Pak1ip1 guacugaccGUGAUUAGACUUAu | || |||||||| auuucuccuCCCU-AUCUGAAUg 2 15 20 41 [mm9:13:41108138-41108159:+] 0.5214 148 7 -11.11 -0.6538 MIMAT0004841 mmu-miR-871 68083 Pak1ip1 guacugacCGUGAUUAGACUUau |:| :||||||| cagagcaaGUAAAGAUCUGAAaa 3 16 227 249 [mm9:13:41108345-41108367:+] 0.5169 131 0 -10.22 -0.1175 MIMAT0004864 mmu-miR-297a* 68083 Pak1ip1 auacccauacacacaUACAUAu |||||| uuacaaucuuugcucAUGUAUc 2 8 151 172 [mm9:13:41103660-41103681:+] 0.5874 120 6 -3.25 -0.1453 MIMAT0004866 mmu-miR-297c* 68083 Pak1ip1 auacccauacacacaUACAUAu |||||| uuacaaucuuugcucAUGUAUc 2 8 151 172 [mm9:13:41103660-41103681:+] 0.5874 120 6 -3.25 -0.1453 MIMAT0004876 mmu-miR-466b-3p 68083 Pak1ip1 agaauacacacgcacaUACAUAu |||||| guuacaaucuuugcucAUGUAUc 2 8 150 172 [mm9:13:41103659-41103681:+] 0.5874 120 6 -5.82 -0.1439 MIMAT0005453 mmu-miR-466b-3-3p 68083 Pak1ip1 agaauacacacgcacaUACAUAa |||||| guuacaaucuuugcucAUGUAUc 2 8 150 172 [mm9:13:41103659-41103681:+] 0.5874 120 6 -6.08 -0.1439 MIMAT0004878 mmu-miR-466c-3p 68083 Pak1ip1 agaauacacacgcacaUACAUAu |||||| guuacaaucuuugcucAUGUAUc 2 8 150 172 [mm9:13:41103659-41103681:+] 0.5874 120 6 -5.82 -0.1439 MIMAT0004880 mmu-miR-466e-3p 68083 Pak1ip1 agaauacacacgcacaUACAUAu |||||| guuacaaucuuugcucAUGUAUc 2 8 150 172 [mm9:13:41103659-41103681:+] 0.5874 120 6 -5.82 -0.1439 MIMAT0004931 mmu-miR-466d-3p 68083 Pak1ip1 gauacacacgcacaUACAUAu |||||| uacaaucuuugcucAUGUAUc 2 8 152 172 [mm9:13:41103661-41103681:+] 0.5874 120 6 -4.36 -0.1439 MIMAT0004938 mmu-miR-875-3p 68083 Pak1ip1 guaUCGGAGUCAUAAAAGUCc |||| || ||||||| uagAGCCGAAG--UUUUCAGc 2 19 234 252 [mm9:13:41103743-41103761:+] 0.4784 151 7 -15.43 -0.2948 MIMAT0005854 mmu-miR-467g 68083 Pak1ip1 uauaUACACACACAUACAUAu || | || |||||| uacaAUCUUUGCUCAUGUAUc 2 18 152 172 [mm9:13:41103661-41103681:+] 0.5874 121 6 -3.25 -0.1453 MIMAT0005857 mmu-miR-1196 68083 Pak1ip1 uccgucuccguccAUCUAAa |||||| uggcauuuuauuaUAGAUUg 2 8 176 195 [mm9:13:41108294-41108313:+] 0.5278 120 6 -7.98 -0.2388 MIMAT0007878 mmu-miR-1894-3p 68083 Pak1ip1 gagggAAGUGGGAGAGGGA-ACg ||| || | ||||| || cggaaUUCUCCAUGUCCCUGUGa 2 18 51 73 [mm9:13:41108169-41108191:+] 0.5075 125 0 -14.89 -0.7571 MIMAT0009408 mmu-miR-1943 68083 Pak1ip1 agguccacGGGUCU----AGGAGGGAa |||||| |||||||| uggcaaauCCCAGAUUUCUCCUCCCUa 2 16 7 33 [mm9:13:41108125-41108151:+] 0.5214 154 7 -25.94 -1.2019 MIMAT0009428 mmu-miR-1956 68083 Pak1ip1 aggcGACU-GAGUCGGGACCUGa |||| ||| ||||||| gaauCUGAGGCCAG-CCUGGACu 2 19 404 425 [mm9:13:41103913-41103934:+] 0.4950 151 7 -27.46 -0.1207 MIMAT0009431 mmu-miR-1958 68083 Pak1ip1 ugaaugacgAAGGUGAAAGGAu | :||||||||| uaggggacaUGUCACUUUCCUu 2 14 68 89 [mm9:13:41103577-41103598:+] 0.7308 153 7 -15.66 -1.1369 MIMAT0009439 mmu-miR-1966 68083 Pak1ip1 cugagagaggacucggucGAGGGAa |||||| gcaaaucccagauuucucCUCCCUa 2 8 9 33 [mm9:13:41108127-41108151:+] 0.5214 120 6 -15.66 -0.1144 MIMAT0009442 mmu-miR-1969 68083 Pak1ip1 ugGGUACAAUUUCAGAGGUA-GAa ||| || ||:||||| || uaCCAAAAUACUGUUUCCAUGCUg 2 22 186 209 [mm9:13:41103695-41103718:+] 0.4554 125 0 -14.79 -0.8994 MIMAT0009458 mmu-miR-1981 68083 Pak1ip1 cggugCAGAUUC--GGGUCGG-AAAUg | | ||| ::||||| |||| guagaGCCGAAGUUUUCAGCCAUUUAa 2 20 233 259 [mm9:13:41103742-41103768:+] 0.4784 122 0 -18.76 -0.7981 MIMAT0011222 mmu-miR-2146 68083 Pak1ip1 gugUACCUUGGGAAGAGGUg | |||| ||||||| uugACGGAA---UUCUCCAu 2 18 47 63 [mm9:13:41108165-41108181:+] 0.4842 145 7 -13.74 -0.4394 MIMAT0015644 mmu-miR-1186b 68083 Pak1ip1 caccacguacggaaaUUAGGGu |||||| ----cucacguggcaAAUCCCa 2 8 1 18 [mm9:13:41108119-41108136:+] 0.5586 120 6 -15.96 -0.1019 MIMAT0000127 mmu-miR-29b 68083 Pak1ip1 uugUGACUA-AAGUUUACCACGAu || | | ||:|::||||||| agaACCGCUCUUUAGGUGGUGCUu 2 21 118 141 [mm9:13:41108236-41108259:+] 0.5278 163 7 -21.27 -0.9595 MIMAT0000128 mmu-miR-30a 68083 Pak1ip1 gaaggucAGCUCCUACAAAUGu | | | ||||||| uaauauaUAGUGAUUGUUUACu 2 16 196 217 [mm9:13:41108314-41108335:+] 0.5278 143 7 -10.56 -1.1152 MIMAT0000130 mmu-miR-30b 68083 Pak1ip1 ucgacucACAUC-CU-ACAAAUGu | ||| || ||||||| uguaauaUAUAGUGAUUGUUUACu 2 16 194 217 [mm9:13:41108312-41108335:+] 0.5278 149 7 -9.91 -1.1107 MIMAT0000133 mmu-miR-101a 68083 Pak1ip1 aaGUCAAUAGUGUC-AUGACAu ||| ||: || |||||| uuCAGCCAUUUAAGUUACUGUa 2 20 247 268 [mm9:13:41103756-41103777:+] 0.4882 123 6 -14.66 -0.7922 MIMAT0000156 mmu-miR-144 68083 Pak1ip1 ucaUGUAGUAGAUAUGACAu |:| || ||||||| guaAUACCA-AAAUACUGUu 2 18 182 200 [mm9:13:41103691-41103709:+] 0.4554 143 7 -8.50 -0.9235 MIMAT0000210 mmu-miR-181a 68083 Pak1ip1 ugAGUGGCUGUCGCAACUUACAa || :| :| | ||||||| ucUCCUCCCUAUC--UGAAUGUc 2 22 23 43 [mm9:13:41108141-41108161:+] 0.5214 142 7 -10.34 -0.1750 MIMAT0000248 mmu-miR-30e 68083 Pak1ip1 gaaggucaGUUCCU-ACAAAUGu :|: || ||||||| guaauauaUAGUGAUUGUUUACu 2 15 195 217 [mm9:13:41108313-41108335:+] 0.5278 145 7 -10.08 -1.1107 MIMAT0000514 mmu-miR-30c 68083 Pak1ip1 cgacucucACAUC-CU-ACAAAUGu | ||| || ||||||| uuguaauaUAUAGUGAUUGUUUACu 2 16 193 217 [mm9:13:41108311-41108335:+] 0.5278 149 7 -10.19 -1.1107 MIMAT0000515 mmu-miR-30d 68083 Pak1ip1 gaaggucAGCCCCUACAAAUGu | | | ||||||| uaauauaUAGUGAUUGUUUACu 2 16 196 217 [mm9:13:41108314-41108335:+] 0.5278 143 7 -8.82 -1.1152 MIMAT0000535 mmu-miR-29a 68083 Pak1ip1 auUGGCUA-AAGUCUACCACGAu |||| | ||:||:||||||| gaACCGCUCUUUAGGUGGUGCUu 2 21 119 141 [mm9:13:41108237-41108259:+] 0.5278 175 7 -28.53 -0.9595 MIMAT0000536 mmu-miR-29c 68083 Pak1ip1 auUGGCUA-AAGUUUACCACGAu |||| | ||:|::||||||| gaACCGCUCUUUAGGUGGUGCUu 2 21 119 141 [mm9:13:41108237-41108259:+] 0.5278 171 7 -25.93 -0.9595 MIMAT0000590 mmu-miR-342-3p 68083 Pak1ip1 ugcccACGCUAAAGACACA-CUCu | | ||||| |||| ||| cauacUACCAUUUCCGUGUAGAGc 2 19 216 239 [mm9:13:41103725-41103748:+] 0.4726 130 0 -12.28 -0.2091 MIMAT0000597 mmu-miR-346 68083 Pak1ip1 ucuccGUCCGUGAGC-CCGUCUGu |||| :| | ||||||| gcacuCAGGGGCCAGAGGCAGACu 2 19 371 394 [mm9:13:41103880-41103903:+] 0.4975 153 7 -23.96 -0.1732 MIMAT0000616 mmu-miR-101b 68083 Pak1ip1 aaGUCGAUAGUGUC-AUGACAu |||| ||: || |||||| uuCAGCCAUUUAAGUUACUGUa 2 20 247 268 [mm9:13:41103756-41103777:+] 0.4882 131 6 -17.94 -0.7886 MIMAT0000656 mmu-miR-139-5p 68083 Pak1ip1 gaccucuGUGCACGUGACAUCu :| || :||||||| agccauuUAAGU-UACUGUAGu 2 16 250 270 [mm9:13:41103759-41103779:+] 0.4882 145 7 -11.56 -1.0088 MIMAT0000673 mmu-miR-181b 68083 Pak1ip1 uggguggcugucguuACUUACAa ||||||| uuucuccucccuaucUGAAUGUc 2 9 21 43 [mm9:13:41108139-41108161:+] 0.5214 140 7 -12.16 -0.1883 MIMAT0000674 mmu-miR-181c 68083 Pak1ip1 ugAGUGGCUGUCCA-ACUUACAa || || | | ||||||| uuUCUCCUCCCUAUCUGAAUGUc 2 21 21 43 [mm9:13:41108139-41108161:+] 0.5214 143 7 -11.02 -0.1848 MIMAT0000711 mmu-miR-365 68083 Pak1ip1 uauuccuaaaaauccCCGUAAu |||||| guuauuuuggcagauGGCAUUu 2 8 162 183 [mm9:13:41108280-41108301:+] 0.5278 120 6 -9.06 -0.1171 MIMAT0000739 mmu-miR-375 68083 Pak1ip1 agUGCGCUCGG--CU--UGC-UUGUUu | || |||| || ||| ||||| ugAGGCCAGCCUGGACUACGUAACAAg 2 21 409 435 [mm9:13:41103918-41103944:+] 0.4950 122 0 -17.48 -0.2327 MIMAT0000746 mmu-miR-381 68083 Pak1ip1 ugucucucgaacgggAACAUAu |||||| guaaagaucugaaaaUUGUAUu 2 8 235 256 [mm9:13:41108353-41108374:+] 0.5169 120 6 -8.83 -0.1383 MIMAT0004745 mmu-miR-384-5p 68083 Pak1ip1 ugUAACGGAUCCUUAACAAAUGu | | : ||| :||||||||| guAAUAUAUAGUGAUUGUUUACu 2 22 195 217 [mm9:13:41108313-41108335:+] 0.5278 165 7 -12.93 -1.1130 MIMAT0003169 mmu-miR-539 68083 Pak1ip1 ugugugguuccuaUUAAAGAGg :||||||| guggcaaaucccaGAUUUCUCc 2 10 6 27 [mm9:13:41108124-41108145:+] 0.5586 141 7 -14.51 -0.6715 MIMAT0003727 mmu-miR-374 68083 Pak1ip1 gugaAUCGUCCAACAUAAUAUa |:||| || ||||||| cagaUGGCA--UUUUAUUAUAg 2 19 172 191 [mm9:13:41108290-41108309:+] 0.5278 155 7 -6.75 -1.0888 MIMAT0003456 mmu-miR-495 68083 Pak1ip1 uucUUCA-CGUGGUAC-AAACAAa |:|| |::|: || |||||| uuuAGGUGGUGCUUUGUUUUGUUa 2 20 128 151 [mm9:13:41108246-41108269:+] 0.5278 126 6 -12.07 -0.7987 MIMAT0004324 mmu-miR-181d 68083 Pak1ip1 uggguggcuguuguuACUUACAa ||||||| uuucuccucccuaucUGAAUGUc 2 9 21 43 [mm9:13:41108139-41108161:+] 0.5214 140 7 -12.16 -0.1883 MIMAT0004854 mmu-miR-876-5p 68083 Pak1ip1 aucacuaAGUGU-CUCUUUAGGu ||||: |: |||||| ------cUCACGUGGCAAAUCCc 2 16 1 17 [mm9:13:41108119-41108135:+] 0.5586 126 6 -12.42 -0.2690 MIMAT0004896 mmu-miR-590-3p 68083 Pak1ip1 ugaucgaauauguaUUUUAAu |||||| caaguaaagaucugAAAAUUg 2 8 232 252 [mm9:13:41108350-41108370:+] 0.5169 120 6 -3.06 -0.1567 MIMAT0005850 mmu-miR-1192 68083 Pak1ip1 uuAAACCA-GAC-AAAC-AAACAAa || ||| || |||| |||||| cuUUAGGUGGUGCUUUGUUUUGUUa 2 21 127 151 [mm9:13:41108245-41108269:+] 0.5278 130 6 -10.39 -0.8023

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G043947 Pak1ip1 Mus musculus 68083

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Pak1ip1 mghv-miR-M1-9 beg:87 end:105 pic:3' TTTTTCCAGGTCCG-TTTACACT 5'& |||. ||||||| &5' -------TCCGTAGAAAATGTG- 3' Pak1ip1 mmu-miR-770-5p beg:121 end:141 pic:3' GCACCGGGTCTGTGCACCACGA 5'& ||.| .| |||||||| &5' ----GCTCTT-TAGGTGGTGCT 3' Pak1ip1 mcmv-miR-m01-1 beg:16 end:30 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& ||. |||||||| &5' ------GAT----TTCTCCTC- 3' Pak1ip1 mmu-miR-106b beg:168 end:186 pic:3' TAGACGTGACAGTCGTGAAAT 5'& ||| | ..|||.|||| &5' ----GCA--GATGGCATTTTA 3' Pak1ip1 mmu-miR-1186b beg:2 end:19 pic:3' CACCACGTACGGAAATTAGGGT 5'& |.|| | ||||||| &5' ------CGTGGCA--AATCCCA 3' Pak1ip1 mmu-miR-135astar beg:13 end:35 pic:3' GCGGTGCC--GAGGTTAGGGATAT 5'& ||| |||| ||||||| &5' --CCAGATTTCTCC--TCCCTAT- 3' Pak1ip1 mmu-miR-17 beg:168 end:185 pic:3' GATGGACGTGACATTCGTGAAAC 5'& ||| .|||.||| &5' ------GCAGAT--GGCATTTT- 3' Pak1ip1 mmu-miR-181d beg:27 end:43 pic:3' TGGGTGGCTGTTGTTACTTACAA 5'& ||.|.| ||||||| &5' -CCTATC--------TGAATGT- 3' Pak1ip1 mmu-miR-1940 beg:32 end:64 pic:3' TTGACGAGGTGGAAGA--GTC--AGGAGGTA 5'& ||| ||||.| |.| |.|||||| &5' --CTGAATGTCCTTTTGACGGAATTCTCCAT 3' Pak1ip1 mmu-miR-1943 beg:12 end:33 pic:3' AGGTCCACGGGTCT----AGGAGGGAA 5'& |||||| |||||||| &5' --------CCCAGATTTCTCCTCCCT- 3' Pak1ip1 mmu-miR-203star beg:110 end:127 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& ||| |||||||.|| &5' ----GAAA----AAGAACCGCT 3' Pak1ip1 mmu-miR-20a beg:168 end:186 pic:3' GATGGACGTGATATTCGTGAAAT 5'& ||| || .|||.|||| &5' ------GCAG-AT-GGCATTTTA 3' Pak1ip1 mmu-miR-26b beg:239 end:261 pic:3' TGGATAGGACTTA----ATGAACTT 5'& .||||| ||.||||| &5' ------TCTGAAAATTGTATTTGAA 3' Pak1ip1 mmu-miR-290-3p beg:167 end:185 pic:3' CCCGAATTTTGATCCGCCGTGAAA 5'& ||| || .||||.||| &5' -GGC--------AGATGGCATTTT 3' Pak1ip1 mmu-miR-292-3p beg:164 end:185 pic:3' TGTGAGTTTTGGACCG----CCGTGAAA 5'& ..|||| ||||.||| &5' ----------TTTGGCAGATGGCATTTT 3' Pak1ip1 mmu-miR-29a beg:120 end:141 pic:3' ATTGGCTA-AAGTCTACCACGAT 5'& |||| ||.||.||||||| &5' --ACCGCTCTTTAGGTGGTGCT- 3' Pak1ip1 mmu-miR-29b beg:120 end:141 pic:3' TTGTGACTAAAGTTTACCACGAT 5'& |.|| ||.|..||||||| &5' --CGCTC--TTTAGGTGGTGCT- 3' Pak1ip1 mmu-miR-29c beg:120 end:141 pic:3' ATTGGCTA-AAGTTTACCACGAT 5'& |||| ||.|..||||||| &5' --ACCGCTCTTTAGGTGGTGCT- 3' Pak1ip1 mmu-miR-3099 beg:11 end:34 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& |||| .|..|||| || |||| &5' TCCCAGATTTCTC-CTC-CCTA 3' Pak1ip1 mmu-miR-30astar beg:232 end:261 pic:3' CGACGTTTGTAGGCT---------GACTTTC 5'& |.||| |||.|| .||||| &5' ---GTAAAGATCTGAAAATTGTATTTGAAA- 3' Pak1ip1 mmu-miR-30estar beg:232 end:261 pic:3' CGACATTTGTAGGCT---------GACTTTC 5'& ||||| |||.|| .||||| &5' ---GTAAAGATCTGAAAATTGTATTTGAAA- 3' Pak1ip1 mmu-miR-330star beg:122 end:145 pic:3' AGAGACGTCCGGGACACGAAACG 5'& |||| .|||. ||||||||. &5' -CTCTTTAGGTG--GTGCTTTGT 3' Pak1ip1 mmu-miR-376b beg:59 end:74 pic:3' TTCACCTACAAGGAGATACTA 5'& ||| ||| ||.||| &5' ------ATG-TCC-CTGTGA- 3' Pak1ip1 mmu-miR-384-5p beg:200 end:217 pic:3' TGTAACGGATCCTTAACAAATGT 5'& ||| ||||||||| &5' --------TAGTGATTGTTTAC- 3' Pak1ip1 mmu-miR-448 beg:87 end:108 pic:3' TACCCTGTAGGATG----TATACGTT 5'& ||| ||.||||. &5' --------TCCGTAGAAAATGTGCAG 3' Pak1ip1 mmu-miR-539 beg:6 end:28 pic:3' TGTGT--GGTTCCTATTAAAGAGG 5'& .|| ||| .|||||||| &5' GCAAATCCCA-----GATTTCTCC 3' Pak1ip1 mmu-miR-767 beg:121 end:140 pic:3' ACGAGTCTGTTGGTACCACGT 5'& |||| .|. .|||||| &5' -GCTCTT-TAG--GTGGTGC- 3' Pak1ip1 mmu-miR-181c beg:24 end:43 pic:3' TGAGTGGCTGTCCAACTTACAA 5'& ||| || |. ||||||| &5' -CTC-CCTATC---TGAATGT- 3' Pak1ip1 mmu-miR-181b beg:27 end:43 pic:3' TGGGTGGCTGTCGTTACTTACAA 5'& ||.|.| ||||||| &5' -CCTATC--------TGAATGT- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pak1ip1 RAID00092123 mmu-miR-181a-5p miRNA MIMAT0000210 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID00165913 mmu-miR-590-3p miRNA MIMAT0004896 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID00168476 mmu-miR-101b-3p miRNA MIMAT0000616 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID00211942 mmu-miR-1306-5p miRNA MIMAT0019136 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID00211944 mmu-miR-346-5p miRNA MIMAT0000597 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID00454638 mmu-miR-181b-5p miRNA MIMAT0000673 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID00456841 mmu-miR-149-3p miRNA MIMAT0016990 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID00758263 mmu-miR-6929-5p miRNA MIMAT0027758 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID00850624 mmu-miR-7215-3p miRNA MIMAT0028399 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID00884578 mmu-miR-375-3p miRNA MIMAT0000739 Pak1ip1 mRNA 68083 CLIP-seq//Prediction 0.6308 Pak1ip1 RAID01021536 mmu-miR-181d-5p miRNA MIMAT0004324 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID01139121 mmu-miR-101a-3p miRNA MIMAT0000133 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID01203921 mmu-miR-30e-5p miRNA MIMAT0000248 Pak1ip1 mRNA 68083 CLIP-seq//Prediction 0.6308 Pak1ip1 RAID01286106 mmu-miR-30b-5p miRNA MIMAT0000130 Pak1ip1 mRNA 68083 CLIP-seq//Prediction 0.6308 Pak1ip1 RAID01415286 mmu-miR-876-5p miRNA MIMAT0004854 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID01481539 mmu-miR-7670-5p miRNA MIMAT0029846 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID01715092 mmu-miR-381-3p miRNA MIMAT0000746 Pak1ip1 mRNA 68083 CLIP-seq//Prediction 0.6308 Pak1ip1 RAID01799155 mmu-miR-495-3p miRNA MIMAT0003456 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID01851742 mmu-miR-342-3p miRNA MIMAT0000590 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID02045323 mmu-miR-1192 miRNA MIMAT0005850 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID02051739 mmu-miR-1943-5p miRNA MIMAT0009408 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID02151591 mmu-miR-139-5p miRNA MIMAT0000656 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID02169857 mmu-miR-7016-5p miRNA MIMAT0027936 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID02331255 mmu-miR-29c-3p miRNA MIMAT0000536 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID02392100 mmu-miR-770-5p miRNA MIMAT0004822 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID02449897 mmu-miR-365-3p miRNA MIMAT0000711 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID02469627 mmu-miR-374b-5p miRNA MIMAT0003727 Pak1ip1 mRNA 68083 CLIP-seq//Prediction 0.6308 Pak1ip1 RAID02583399 mmu-miR-1298-3p miRNA MIMAT0014810 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID02667279 mmu-miR-6967-5p miRNA MIMAT0027836 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID02693573 mmu-miR-30d-5p miRNA MIMAT0000515 Pak1ip1 mRNA 68083 CLIP-seq//Prediction 0.6308 Pak1ip1 RAID02695026 mmu-miR-539-5p miRNA MIMAT0003169 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID03012905 mmu-miR-3084-3p miRNA MIMAT0014877 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID03246624 mmu-miR-144-3p miRNA MIMAT0000156 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID03319337 mmu-miR-30a-5p miRNA MIMAT0000128 Pak1ip1 mRNA 68083 CLIP-seq//Prediction 0.6308 Pak1ip1 RAID03538272 mmu-miR-181c-5p miRNA MIMAT0000674 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID03711244 mmu-miR-30c-5p miRNA MIMAT0000514 Pak1ip1 mRNA 68083 CLIP-seq//Prediction 0.6308 Pak1ip1 RAID03738660 mmu-miR-29a-3p miRNA MIMAT0000535 Pak1ip1 mRNA 68083 Prediction 0.1828 Pak1ip1 RAID03916716 mmu-miR-384-5p miRNA MIMAT0004745 Pak1ip1 mRNA 68083 CLIP-seq//Prediction 0.6308 Pak1ip1 RAID04013260 mmu-miR-29b-3p miRNA MIMAT0000127 Pak1ip1 mRNA 68083 Prediction 0.1828