DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 232679 Zc3hc1 cgacguuuguaggcuGACUUUc |||||| agaaauagagucucuCUGAAAa 2 8 28 49 [mm9:6:30316732-30316745,30319933-30319940:-] 0.6691 120 6 -10.02 -0.1589 MIMAT0000217 mmu-miR-188-5p 232679 Zc3hc1 ggGAGGUGGUACGUUCCCUAc ||| | :| | ||||||| -cCUCGAGUAGGGAAGGGAUa 2 20 1 20 [mm9:6:30319948-30319967:-] 0.6129 159 7 -19.65 -1.0695 MIMAT0000249 mmu-miR-30e* 232679 Zc3hc1 cgacAUUUGUAGGCUGACUUUc ||:| :||: |||||| gaaaUAGA-GUCUCUCUGAAAa 2 19 29 49 [mm9:6:30316732-30316745,30319933-30319939:-] 0.6691 124 6 -9.70 -0.1589 MIMAT0000367 mmu-miR-291a-5p 232679 Zc3hc1 ucuCUCCCGGAGGUGAAACUAc ||||| |||||||| acuGAGGG----GACUUUGAUa 2 20 121 138 [mm9:6:30316643-30316660:-] 0.5084 146 7 -15.52 -0.5794 MIMAT0000367 mmu-miR-291a-5p 232679 Zc3hc1 ucuCUCCCGGAGGUGAAACUAc ||||| |||||||| acuGAGGG----GACUUUGAUa 2 20 17 34 [mm9:6:30316643-30316660:-] 0.5084 146 7 -15.52 -0.8168 MIMAT0004628 mmu-miR-21* 232679 Zc3hc1 cuGUCGGGUAGCUGACGACAAc ||||: | :|||||||| guCAGCU--GCUGCUGCUGUUc 2 21 159 178 [mm9:6:30316603-30316622:-] 0.5084 153 7 -19.07 -0.1587 MIMAT0004628 mmu-miR-21* 232679 Zc3hc1 cuGUCGGGUAGCUGACGACAAc ||||: | :|||||||| guCAGCU--GCUGCUGCUGUUc 2 21 55 74 [mm9:6:30316603-30316622:-] 0.5084 153 7 -19.07 -0.1701 MIMAT0004629 mmu-miR-22* 232679 Zc3hc1 auUUCGAACGGUGACU-UCUUGa ||| |||: | || ||||| ugAAG-AUGCUCCGGACAGAACu 2 21 102 123 [mm9:6:30316658-30316679:-] 0.6557 122 0 -14.24 -0.1848 MIMAT0004630 mmu-miR-26b* 232679 Zc3hc1 cucggUUCAUUACCUC-UUGUCc ||| :|| || ||||| uagggAAGGGAUACAGCAACAGa 2 18 8 30 [mm9:6:30319938-30319960:-] 0.6129 121 0 -10.62 -1.2820 MIMAT0000556 mmu-miR-324-3p 232679 Zc3hc1 ucGUCGU--GGACC---CCGUCACc ||||: ::||| ||||||| uuCAGCGGCUUUGGUUCGGCAGUGu 2 19 317 341 [mm9:6:30316440-30316464:-] 0.5065 148 7 -25.71 -0.3299 MIMAT0000556 mmu-miR-324-3p 232679 Zc3hc1 ucGUCGUG-GACCCCGUCACc | | |: :| ||||||| uuCCGAAUAUUCCGGCAGUGg 2 19 63 83 [mm9:6:30316698-30316718:-] 0.8029 141 7 -17.24 -0.7022 MIMAT0000556 mmu-miR-324-3p 232679 Zc3hc1 ucGUCGU--GGACC---CCGUCACc ||||: ::||| ||||||| uuCAGCGGCUUUGGUUCGGCAGUGu 2 19 213 237 [mm9:6:30316440-30316464:-] 0.5065 148 7 -25.71 -0.3472 MIMAT0004663 mmu-miR-200c* 232679 Zc3hc1 gguuugugacGACCCAUUCUGc | ||||||||| gggguguggaCAGGGUAAGACa 2 13 250 271 [mm9:6:30316510-30316531:-] 0.5065 152 7 -16.93 -0.1147 MIMAT0004663 mmu-miR-200c* 232679 Zc3hc1 gguuugugacGACCCAUUCUGc | ||||||||| gggguguggaCAGGGUAAGACa 2 13 146 167 [mm9:6:30316510-30316531:-] 0.5065 152 7 -16.93 -0.1221 MIMAT0000706 mmu-miR-362-5p 232679 Zc3hc1 uaAGUGUGGAUCCAAGGUUCCUaa || | |: | :|||||| agUCUCUCUGAAAAAUCAAGGAaa 3 23 36 59 [mm9:6:30316722-30316745:-] 0.7252 126 0 -11.95 -0.1365 MIMAT0004704 mmu-miR-335-3p 232679 Zc3hc1 ccaguccucguuauuACUUUUu |||||| gaaauagagucucucUGAAAAa 2 8 29 50 [mm9:6:30316731-30316745,30319933-30319939:-] 0.6691 120 6 -8.08 -0.1860 MIMAT0004781 mmu-miR-532-3p 232679 Zc3hc1 acGUUCGGAA--CCCACACCCUCc |:| : || || ||||||| ucCGAAUAUUCCGGCAGUGGGAGu 2 21 64 87 [mm9:6:30316694-30316717:-] 0.8029 147 7 -17.19 -0.8917 MIMAT0003189 mmu-miR-291b-5p 232679 Zc3hc1 ccuCUCCCGGAGGUGAAACUAg ||||| |||||||| acuGAGGG----GACUUUGAUa 2 20 121 138 [mm9:6:30316643-30316660:-] 0.5084 146 7 -16.52 -0.5794 MIMAT0003189 mmu-miR-291b-5p 232679 Zc3hc1 ccuCUCCCGGAGGUGAAACUAg ||||| |||||||| acuGAGGG----GACUUUGAUa 2 20 17 34 [mm9:6:30316643-30316660:-] 0.5084 146 7 -16.52 -0.8168 MIMAT0003493 mmu-miR-703 232679 Zc3hc1 aagAAAGGAAGACUUC-CAAAa ||||:| | ||| |||| guaUUUCUUAAUAAAGUGUUUg 2 19 370 391 [mm9:6:30316390-30316411:-] 0.6934 126 0 -7.47 -1.1552 MIMAT0003493 mmu-miR-703 232679 Zc3hc1 aagAAAGGAAGACUUC-CAAAa ||||:| | ||| |||| guaUUUCUUAAUAAAGUGUUUg 2 19 266 287 [mm9:6:30316390-30316411:-] 0.6934 126 0 -7.47 -1.1671 MIMAT0004236 mmu-miR-741 232679 Zc3hc1 agaUGUAUCUUACCGUAGAGAGu ||| | ||| | :|||||| gcaACAGA-AAUAGAGUCUCUCu 2 21 23 44 [mm9:6:30316737-30316745,30319933-30319945:-] 0.6691 146 6 -12.48 -0.1300 MIMAT0004839 mmu-miR-743b-5p 232679 Zc3hc1 acUACCUGUGGUCAGACUUgu || || ::| |||||| aaAUAGA-GUCUCUCUGAAaa 3 20 30 49 [mm9:6:30316732-30316745,30319933-30319938:-] 0.6691 129 0 -8.59 -0.1366 MIMAT0004841 mmu-miR-871 232679 Zc3hc1 guacugaccgugauuAGACUUau |||||| cagaaauagagucucUCUGAAaa 3 9 27 49 [mm9:6:30316732-30316745,30319933-30319941:-] 0.6691 120 0 -6.60 -0.1366 MIMAT0004845 mmu-miR-881* 232679 Zc3hc1 ucuacacugacaaUAGAGAGAc :||||||| caacagaaauagaGUCUCUCUg 2 10 24 45 [mm9:6:30316736-30316745,30319933-30319944:-] 0.6691 141 7 -15.17 -0.8939 MIMAT0004868 mmu-miR-343 232679 Zc3hc1 agACCCGUGUACUUC-CCUCu || | |||||| |||| caUGUGAUGAUGAAGAGGAGa 2 19 213 233 [mm9:6:30316548-30316568:-] 0.5065 122 0 -16.81 -0.4339 MIMAT0004868 mmu-miR-343 232679 Zc3hc1 agACCCGUGUACUUC-CCUCu || | |||||| |||| caUGUGAUGAUGAAGAGGAGa 2 19 109 129 [mm9:6:30316548-30316568:-] 0.5065 122 0 -16.81 -0.4553 MIMAT0005292 mmu-miR-582-3p 232679 Zc3hc1 aacccaagucaacaaGUUGUCc |||||| agggaagggauacagCAACAGa 2 8 9 30 [mm9:6:30319938-30319959:-] 0.6129 120 6 -13.74 -0.3406 MIMAT0005847 mmu-miR-1190 232679 Zc3hc1 cugucuccccuuggAGUCGACu ||||||| cugaguuccuuuggUCAGCUGc 2 9 146 167 [mm9:6:30316614-30316635:-] 0.5084 140 7 -12.75 -0.1489 MIMAT0005847 mmu-miR-1190 232679 Zc3hc1 cugucuccccuuggAGUCGACu ||||||| cugaguuccuuuggUCAGCUGc 2 9 42 63 [mm9:6:30316614-30316635:-] 0.5084 140 7 -12.75 -0.1636 MIMAT0007872 mmu-miR-1906 232679 Zc3hc1 ucGGGACGGAGUC--CGACGACGu ||:| |||| |||||||| uuCCUUUGGUCAGCUGCUGCUGCu 2 21 151 174 [mm9:6:30316607-30316630:-] 0.5084 159 7 -22.96 -0.2289 MIMAT0007872 mmu-miR-1906 232679 Zc3hc1 ucGGGACGGAGUC--CGACGACGu ||:| |||| |||||||| uuCCUUUGGUCAGCUGCUGCUGCu 2 21 47 70 [mm9:6:30316607-30316630:-] 0.5084 159 7 -22.96 -0.2583 MIMAT0007876 mmu-miR-1907 232679 Zc3hc1 ugGAGGUCUAGGAGACGACGAg ||:: |:|| |||||||| ucCUUU-GGUCAGCUGCUGCUg 2 21 152 172 [mm9:6:30316609-30316629:-] 0.5084 158 7 -27.61 -0.1451 MIMAT0007876 mmu-miR-1907 232679 Zc3hc1 ugGAGGUCUAGGAGACGACGAg ||:: |:|| |||||||| ucCUUU-GGUCAGCUGCUGCUg 2 21 48 68 [mm9:6:30316609-30316629:-] 0.5084 158 7 -27.61 -0.1528 MIMAT0009391 mmu-miR-1928 232679 Zc3hc1 cucGAC-CGUUACAUCGa ||| || ||||||| guuCUGAGC-AUGUAGCu 2 15 340 356 [mm9:6:30316425-30316441:-] 0.5065 147 7 -17.52 -0.1446 MIMAT0009391 mmu-miR-1928 232679 Zc3hc1 cucGAC-CGUUACAUCGa ||| || ||||||| guuCUGAGC-AUGUAGCu 2 15 236 252 [mm9:6:30316425-30316441:-] 0.5065 147 7 -17.52 -0.1536 MIMAT0009409 mmu-miR-1944 232679 Zc3hc1 uuagucuugaaCUGUAAGUCG-UGUCUc |: || |||| ||||| cgaguagggaaGGGAUACAGCAACAGAa 2 17 4 31 [mm9:6:30319937-30319964:-] 0.6129 124 0 -19.28 -1.2841 MIMAT0009441 mmu-miR-1968 232679 Zc3hc1 ucAGGUGGUAGGAA--UUGUCGACGu ||:: ||||| : ||||||| agUCUGAGUUCCUUUGGUCAGCUGCu 2 23 143 168 [mm9:6:30316613-30316638:-] 0.5084 153 7 -24.02 -0.3184 MIMAT0009441 mmu-miR-1968 232679 Zc3hc1 ucAGGUGGUAGGAA--UUGUCGACGu ||:: ||||| : ||||||| agUCUGAGUUCCUUUGGUCAGCUGCu 2 23 39 64 [mm9:6:30316613-30316638:-] 0.5084 153 7 -24.02 -0.3584 MIMAT0011212 mmu-miR-2136 232679 Zc3hc1 guguagAGUCAGUUGUGGGUc |:|| |||||||| gcagggUUAG--AACACCCAu 2 16 299 317 [mm9:6:30316464-30316482:-] 0.5065 148 7 -15.63 -0.3351 MIMAT0011212 mmu-miR-2136 232679 Zc3hc1 guguagAGUCAGUUGUGGGUc |:|| |||||||| gcagggUUAG--AACACCCAu 2 16 195 213 [mm9:6:30316464-30316482:-] 0.5065 148 7 -15.63 -0.3526 MIMAT0013803 mmu-miR-2861 232679 Zc3hc1 ggcgggcggcgGUCCGGGg ||||||| guaagacacagCAGGCCCa 2 9 264 282 [mm9:6:30316499-30316517:-] 0.5065 140 7 -18.16 -0.2735 MIMAT0013803 mmu-miR-2861 232679 Zc3hc1 ggcgggcggcgGUCCGGGg ||||||| guaagacacagCAGGCCCa 2 9 160 178 [mm9:6:30316499-30316517:-] 0.5065 140 7 -18.16 -0.2887 MIMAT0015640 mmu-miR-3470a 232679 Zc3hc1 ggUCG-GACCAGAUGUUUCACu ||: :| |: |:|||||| acAGUAUUUCUUAAUAAAGUGu 2 20 367 388 [mm9:6:30316393-30316414:-] 0.5999 134 6 -14.76 -0.1325 MIMAT0015640 mmu-miR-3470a 232679 Zc3hc1 ggUCG-GACCAGAUGUUUCACu ||: :| |: |:|||||| acAGUAUUUCUUAAUAAAGUGu 2 20 263 284 [mm9:6:30316393-30316414:-] 0.5999 134 6 -14.76 -0.1408 MIMAT0015645 mmu-miR-3473 232679 Zc3hc1 ccgacucggUAGAGAGGu :||||||: agaaauagaGUCUCUCUg 2 10 28 45 [mm9:6:30316736-30316745,30319933-30319940:-] 0.6691 125 0 -13.10 -0.1029 MIMAT0000124 mmu-miR-15b 232679 Zc3hc1 acAUUUGGUACUAC-ACGACGAu | :::|| | || ||||||| cuUUGGUCA-GCUGCUGCUGCUg 2 21 154 175 [mm9:6:30316606-30316627:-] 0.5084 149 7 -16.73 -0.1880 MIMAT0000124 mmu-miR-15b 232679 Zc3hc1 acAUUUGGUACUAC-ACGACGAu | :::|| | || ||||||| cuUUGGUCA-GCUGCUGCUGCUg 2 21 50 71 [mm9:6:30316606-30316627:-] 0.5084 149 7 -16.73 -0.2013 MIMAT0000125 mmu-miR-23b 232679 Zc3hc1 ccauUAGGGACCGUUACACUa | |:| ||||||||| auguAGCUC-AGCAAUGUGAc 2 18 349 368 [mm9:6:30316413-30316432:-] 0.5065 151 7 -17.19 -0.2131 MIMAT0000125 mmu-miR-23b 232679 Zc3hc1 ccauUAGGGACCGUUACACUa | |:| ||||||||| auguAGCUC-AGCAAUGUGAc 2 18 245 264 [mm9:6:30316413-30316432:-] 0.5065 151 7 -17.19 -0.2257 MIMAT0000128 mmu-miR-30a 232679 Zc3hc1 gaaggucagcuccUACAAAUGu :|||||:| auuucuuaauaaaGUGUUUGCu 2 10 268 289 [mm9:6:30316388-30316409:-] 0.6934 125 0 -9.30 -0.1004 MIMAT0000135 mmu-miR-125a-5p 232679 Zc3hc1 aguguccaAUUUCCCAGA-GUCCCu | |:||| || ||||| caguuccgUCAGGGGACUGCAGGGu 2 17 281 305 [mm9:6:30316476-30316500:-] 0.5065 124 0 -18.87 -0.1084 MIMAT0000135 mmu-miR-125a-5p 232679 Zc3hc1 aguguccaAUUUCCCAGA-GUCCCu | |:||| || ||||| caguuccgUCAGGGGACUGCAGGGu 2 17 177 201 [mm9:6:30316476-30316500:-] 0.5065 124 0 -18.87 -0.1154 MIMAT0000153 mmu-miR-141 232679 Zc3hc1 gguaGAAA-UGGUCUGUCACAAu |||| ::: |:||||||| gcggCUUUGGUUCGGCAGUGUUc 2 19 321 343 [mm9:6:30316438-30316460:-] 0.5065 157 7 -19.30 -0.1269 MIMAT0000153 mmu-miR-141 232679 Zc3hc1 gguaGAAA-UGGUCUGUCACAAu |||| ::: |:||||||| gcggCUUUGGUUCGGCAGUGUUc 2 19 217 239 [mm9:6:30316438-30316460:-] 0.5065 157 7 -19.30 -0.1349 MIMAT0000208 mmu-miR-10b 232679 Zc3hc1 guguuuaagCCA-AGAUGUCCCAu ||| | ||||||| ucuguguggGGUGUGGACAGGGUa 2 15 243 266 [mm9:6:30316515-30316538:-] 0.5065 145 7 -18.75 -0.2885 MIMAT0000208 mmu-miR-10b 232679 Zc3hc1 guguuuaagCCA-AGAUGUCCCAu ||| | ||||||| ucuguguggGGUGUGGACAGGGUa 2 15 139 162 [mm9:6:30316515-30316538:-] 0.5065 145 7 -18.75 -0.3044 MIMAT0000214 mmu-miR-185 232679 Zc3hc1 agUCCUUGACGGAAAGAGAGGu || ||: | ||||||: acAGAAAUAG--AGUCUCUCUg 2 21 26 45 [mm9:6:30316736-30316745,30319933-30319942:-] 0.6691 125 0 -13.91 -0.1029 MIMAT0000225 mmu-miR-195 232679 Zc3hc1 cgguuauaaaGAC-ACGACGAu ||| ||||||| cuuuggucagCUGCUGCUGCUg 2 12 154 175 [mm9:6:30316606-30316627:-] 0.5084 146 7 -19.86 -0.1898 MIMAT0000225 mmu-miR-195 232679 Zc3hc1 cgguuauaaaGAC-ACGACGAu ||| ||||||| cuuuggucagCUGCUGCUGCUg 2 12 50 71 [mm9:6:30316606-30316627:-] 0.5084 146 7 -19.86 -0.2031 MIMAT0000233 mmu-miR-200b 232679 Zc3hc1 aguAGUAAUGGU-CCGUCAUAAu ||| | :: | ||||||| agcUCAGCAAUGUGACAGUAUUu 2 20 353 375 [mm9:6:30316406-30316428:-] 0.5999 146 7 -10.10 -1.0896 MIMAT0000233 mmu-miR-200b 232679 Zc3hc1 aguAGUAAUGGU-CCGUCAUAAu ||| | :: | ||||||| agcUCAGCAAUGUGACAGUAUUu 2 20 249 271 [mm9:6:30316406-30316428:-] 0.5999 146 7 -10.10 -1.1044 MIMAT0000247 mmu-miR-143 232679 Zc3hc1 cuCGAUGUCACGAAGUA-GAGu |: : ||| |||||| ||| caGUGGGAGU-CUUCAUCCUCa 2 20 78 98 [mm9:6:30316683-30316703:-] 0.8029 121 0 -17.07 -0.9995 MIMAT0000515 mmu-miR-30d 232679 Zc3hc1 gaaggucagccccUACAAAUGu :|||||:| auuucuuaauaaaGUGUUUGCu 2 10 268 289 [mm9:6:30316388-30316409:-] 0.6934 125 0 -9.30 -0.1015 MIMAT0000519 mmu-miR-200a 232679 Zc3hc1 uguaGCAA-UGGUCUGUCACAAu | || ::: |:||||||| gcggCUUUGGUUCGGCAGUGUUc 2 19 321 343 [mm9:6:30316438-30316460:-] 0.5065 149 7 -16.53 -0.1269 MIMAT0000519 mmu-miR-200a 232679 Zc3hc1 uguaGCAA-UGGUCUGUCACAAu | || ::: |:||||||| gcggCUUUGGUUCGGCAGUGUUc 2 19 217 239 [mm9:6:30316438-30316460:-] 0.5065 149 7 -16.53 -0.1349 MIMAT0000526 mmu-miR-15a 232679 Zc3hc1 guguuuggUAAUACACGACGAu :| | ||||||| uuccuuugGUCAGCUGCUGCUg 2 15 151 172 [mm9:6:30316609-30316630:-] 0.5084 142 7 -14.36 -0.1465 MIMAT0000526 mmu-miR-15a 232679 Zc3hc1 guguuuggUAAUACACGACGAu :| | ||||||| uuccuuugGUCAGCUGCUGCUg 2 15 47 68 [mm9:6:30316609-30316630:-] 0.5084 142 7 -14.36 -0.1543 MIMAT0000527 mmu-miR-16 232679 Zc3hc1 gcGGUUAUAAAUGCACGACGAu || |: | | ||||||| uuCCUUUGGUCAGCUGCUGCUg 2 21 151 172 [mm9:6:30316609-30316630:-] 0.5084 148 7 -15.85 -0.1465 MIMAT0000527 mmu-miR-16 232679 Zc3hc1 gcGGUUAUAAAUGCACGACGAu || |: | | ||||||| uuCCUUUGGUCAGCUGCUGCUg 2 21 47 68 [mm9:6:30316609-30316630:-] 0.5084 148 7 -15.85 -0.1543 MIMAT0000532 mmu-miR-23a 232679 Zc3hc1 ccuuUAGGGACCGUUACACUa | |:| ||||||||| auguAGCUC-AGCAAUGUGAc 2 18 349 368 [mm9:6:30316413-30316432:-] 0.5065 151 7 -15.21 -0.2131 MIMAT0000532 mmu-miR-23a 232679 Zc3hc1 ccuuUAGGGACCGUUACACUa | |:| ||||||||| auguAGCUC-AGCAAUGUGAc 2 18 245 264 [mm9:6:30316413-30316432:-] 0.5065 151 7 -15.21 -0.2257 MIMAT0000548 mmu-miR-322 232679 Zc3hc1 agguuuugUACUUAACGACGAc :| |: ||||||| uuccuuugGUCAGCUGCUGCUg 2 15 151 172 [mm9:6:30316609-30316630:-] 0.5084 146 7 -16.63 -0.1465 MIMAT0000548 mmu-miR-322 232679 Zc3hc1 agguuuugUACUUAACGACGAc :| |: ||||||| uuccuuugGUCAGCUGCUGCUg 2 15 47 68 [mm9:6:30316609-30316630:-] 0.5084 146 7 -16.63 -0.1543 MIMAT0000555 mmu-miR-324-5p 232679 Zc3hc1 uguGGUUACGGGA-UCCCCU-ACGc |||:| || | |||||| ||| ggcCCAGUUCCGUCAGGGGACUGCa 2 21 277 301 [mm9:6:30316480-30316504:-] 0.5065 135 0 -24.44 -0.1083 MIMAT0000555 mmu-miR-324-5p 232679 Zc3hc1 uguGGUUACGGGA-UCCCCU-ACGc |||:| || | |||||| ||| ggcCCAGUUCCGUCAGGGGACUGCa 2 21 173 197 [mm9:6:30316480-30316504:-] 0.5065 135 0 -24.44 -0.1153 MIMAT0000584 mmu-miR-339-5p 232679 Zc3hc1 gcacUCGAGG---ACCU----CCUGUCCCu |||||: |||: |||||||| cgauAGCUCUGUGUGGGGUGUGGACAGGGu 2 20 236 265 [mm9:6:30316516-30316545:-] 0.5065 149 7 -29.60 -0.3118 MIMAT0000584 mmu-miR-339-5p 232679 Zc3hc1 gcacUCGAGG---ACCU----CCUGUCCCu |||||: |||: |||||||| cgauAGCUCUGUGUGGGGUGUGGACAGGGu 2 20 132 161 [mm9:6:30316516-30316545:-] 0.5065 149 7 -29.60 -0.3285 MIMAT0000609 mmu-miR-351 232679 Zc3hc1 guCCGAGUUUCCCGAGG-AGUCCCu ||| || |:||| |||||| caGGCCCA----GUUCCGUCAGGGg 2 23 171 191 [mm9:6:30316486-30316506:-] 0.5065 121 6 -28.37 -0.1036 MIMAT0000648 mmu-miR-10a 232679 Zc3hc1 guguuuaAGCCUAGA--UGUCCCAu | ||:| | ||||||| cucugugUGGGGUGUGGACAGGGUa 2 17 242 266 [mm9:6:30316515-30316539:-] 0.5065 147 7 -19.45 -0.2885 MIMAT0000648 mmu-miR-10a 232679 Zc3hc1 guguuuaAGCCUAGA--UGUCCCAu | ||:| | ||||||| cucugugUGGGGUGUGGACAGGGUa 2 17 138 162 [mm9:6:30316515-30316539:-] 0.5065 147 7 -19.45 -0.3044 MIMAT0000657 mmu-miR-200c 232679 Zc3hc1 agGUAGUAAUGGGCCGUCAUAAu || || |: :| ||||||| cuCAGCA--AUGUGACAGUAUUu 2 22 355 375 [mm9:6:30316406-30316426:-] 0.5999 150 7 -12.01 -1.0896 MIMAT0000657 mmu-miR-200c 232679 Zc3hc1 agGUAGUAAUGGGCCGUCAUAAu || || |: :| ||||||| cuCAGCA--AUGUGACAGUAUUu 2 22 251 271 [mm9:6:30316406-30316426:-] 0.5999 150 7 -12.01 -1.1044 MIMAT0000663 mmu-miR-218 232679 Zc3hc1 ugUACCAAUCUAGUUC-GUGUu :||| ||: :||| |||| guGUGGACAGGGUAAGACACAg 2 20 253 274 [mm9:6:30316507-30316528:-] 0.5065 123 0 -16.64 -0.1987 MIMAT0000663 mmu-miR-218 232679 Zc3hc1 ugUACCAAUCUAGUUC-GUGUu :||| ||: :||| |||| guGUGGACAGGGUAAGACACAg 2 20 149 170 [mm9:6:30316507-30316528:-] 0.5065 123 0 -16.64 -0.2106 MIMAT0000669 mmu-miR-221 232679 Zc3hc1 cuuugggucGUCUGUUACAUCGa | || ||||||| ggcaguguuCUGAGCAUGUAGCu 2 15 334 356 [mm9:6:30316425-30316447:-] 0.5065 146 7 -14.80 -0.1589 MIMAT0000669 mmu-miR-221 232679 Zc3hc1 cuuugggucGUCUGUUACAUCGa | || ||||||| ggcaguguuCUGAGCAUGUAGCu 2 15 230 252 [mm9:6:30316425-30316447:-] 0.5065 146 7 -14.80 -0.1687 MIMAT0000670 mmu-miR-222 232679 Zc3hc1 uggGUCAUCGG--UC-UACAUCGa ||||: :| || ||||||| cggCAGUGUUCUGAGCAUGUAGCu 2 19 333 356 [mm9:6:30316425-30316448:-] 0.5065 152 7 -19.24 -0.1573 MIMAT0000670 mmu-miR-222 232679 Zc3hc1 uggGUCAUCGG--UC-UACAUCGa ||||: :| || ||||||| cggCAGUGUUCUGAGCAUGUAGCu 2 19 229 252 [mm9:6:30316425-30316448:-] 0.5065 152 7 -19.24 -0.1671 MIMAT0001095 mmu-miR-370 232679 Zc3hc1 ugGUCCAAGGUGGGGUCGUCCg |||| | : | ||||||| gaCAGGGUAAGACACAGCAGGc 2 21 258 279 [mm9:6:30316502-30316523:-] 0.5065 156 7 -25.20 -0.2129 MIMAT0001095 mmu-miR-370 232679 Zc3hc1 ugGUCCAAGGUGGGGUCGUCCg |||| | : | ||||||| gaCAGGGUAAGACACAGCAGGc 2 21 154 175 [mm9:6:30316502-30316523:-] 0.5065 156 7 -25.20 -0.2254 MIMAT0001537 mmu-miR-429 232679 Zc3hc1 ugcCGUAAUGGUCUGUCAUAAu ||| |:: ||||||||| ucaGCAAUGU--GACAGUAUUu 2 20 356 375 [mm9:6:30316406-30316425:-] 0.5999 156 7 -14.52 -1.0896 MIMAT0001537 mmu-miR-429 232679 Zc3hc1 ugcCGUAAUGGUCUGUCAUAAu ||| |:: ||||||||| ucaGCAAUGU--GACAGUAUUu 2 20 252 271 [mm9:6:30316406-30316425:-] 0.5999 156 7 -14.52 -1.1044 MIMAT0003169 mmu-miR-539 232679 Zc3hc1 uguGUGGUU-C-CUAU--UAAAGAGg || ||| | || | ||||||: gcuCAGCAAUGUGACAGUAUUUCUUa 2 20 354 379 [mm9:6:30316402-30316427:-] 0.5999 132 0 -10.31 -0.2251 MIMAT0003169 mmu-miR-539 232679 Zc3hc1 uguGUGGUU-C-CUAU--UAAAGAGg || ||| | || | ||||||: gcuCAGCAAUGUGACAGUAUUUCUUa 2 20 250 275 [mm9:6:30316402-30316427:-] 0.5999 132 0 -10.31 -0.2382 MIMAT0003453 mmu-miR-497 232679 Zc3hc1 auguuugguGUC-AC-ACGACGAc ||| || ||||||| uccuuugguCAGCUGCUGCUGCUg 2 14 152 175 [mm9:6:30316606-30316629:-] 0.5084 147 7 -20.16 -0.1880 MIMAT0003453 mmu-miR-497 232679 Zc3hc1 auguuugguGUC-AC-ACGACGAc ||| || ||||||| uccuuugguCAGCUGCUGCUGCUg 2 14 48 71 [mm9:6:30316606-30316629:-] 0.5084 147 7 -20.16 -0.2013 MIMAT0004847 mmu-miR-882 232679 Zc3hc1 ugauuacgcgaUUGAGAGAGGa :| ||||||: caacagaaauaGAGUCUCUCUg 2 12 24 45 [mm9:6:30316736-30316745,30319933-30319944:-] 0.6691 127 0 -10.54 -0.1050

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G070618 Zc3hc1 Mus musculus 232679

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Zc3hc1 mmu-miR-23a beg:352 end:368 pic:3' CCTTTAGGGACCGTTACACTA 5'& |.| ||||||||| &5' ------CTCA-GCAATGTGA- 3' Zc3hc1 mmu-miR-2136 beg:300 end:317 pic:3' GTGTAGAGTCAGT--TGTGGGTC 5'& .||.| ||||||| &5' --------GGTTAGAACACCCA- 3' Zc3hc1 mmu-miR-10a beg:248 end:267 pic:3' GTGTTTAAGCCTAGA--TGTCCCAT 5'& ||.| |||||||| &5' ---------GGGTGTGGACAGGGTA 3' Zc3hc1 mmu-miR-10b beg:249 end:267 pic:3' GTGTTTAAGCCAAGA-TGTCCCAT 5'& ||| |||||||| &5' ---------GGTGTGGACAGGGTA 3' Zc3hc1 mmu-miR-370 beg:260 end:280 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& .||| || |||||||| &5' ---GGGTAAGACA-CAGCAGGC 3' Zc3hc1 mmu-miR-1968 beg:149 end:168 pic:3' TCAGGTGGTAGGAATT--GTCGACGT 5'& ||||| ||||||| &5' ---------TCCTTTGGTCAGCTGC- 3' Zc3hc1 mmu-miR-429 beg:356 end:375 pic:3' TGCCGTAATGGTCTGTCATAAT 5'& ||| |. ||||||||| &5' ---GCAATGT--GACAGTATT- 3' Zc3hc1 mmu-miR-200a beg:324 end:343 pic:3' TGTAGCAATGGTCTGTCACAAT 5'& |.| .|.| ||||||| &5' ---TTGGT-TCGG-CAGTGTT- 3' Zc3hc1 mmu-miR-682 beg:286 end:302 pic:3' GTCTGAAGTGACACTGACGTC 5'& ||| | |||||||| &5' ------TCAGGG-GACTGCAG 3' Zc3hc1 mmu-miR-324-3p beg:73 end:84 pic:3' TCGTCGTGGACCCCGTCACC 5'& |||||||| &5' ------------GGCAGTGG 3' Zc3hc1 mmu-miR-200cstar beg:254 end:271 pic:3' GGTTTGTGACGACCCATTCTGC 5'& ..||| ||||||||| &5' --GGACA-----GGGTAAGAC- 3' Zc3hc1 mmu-miR-532-3p beg:73 end:87 pic:3' ACGTTCGGAACCCACACCCTCC 5'& || ||||||| &5' ----------GGCAGTGGGAG- 3' Zc3hc1 mcmv-miR-m01-3 beg:185 end:197 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& |.|||||.| &5' --------------GTTTCACTG 3' Zc3hc1 mcmv-miR-m01-3 beg:73 end:95 pic:3' AGCTCCGTTGTCAGC-GAAGTGGC 5'& ||||. | | |||||.| &5' ----GGCAGTGGGAGTCTTCATC- 3' Zc3hc1 mcmv-miR-m01-3star beg:139 end:157 pic:3' CGGCACTTCGCTCGCAAGGAGC 5'& |||. | ||||||. &5' ------AAGTCTGAGTTCCTT- 3' Zc3hc1 mcmv-miR-m88-1star beg:143 end:163 pic:3' GGCTACAGTCCCCCAGCCAGTA 5'& |.|| ||. |.||||| &5' CTGA-GTTCCT---TTGGTCA- 3' Zc3hc1 mghv-miR-M1-9 beg:351 end:368 pic:3' TTTTTCCAGGTCCGTTTACACT 5'& | || || ||||||| &5' ------GCTCA-GC-AATGTGA 3' Zc3hc1 mmu-miR-10a beg:291 end:306 pic:3' GTGTTTAAGCCTAGATGTCCCAT 5'& ||| ||.|||||| &5' ---------GGA-CTGCAGGGT- 3' Zc3hc1 mmu-miR-10b beg:290 end:306 pic:3' GTGTTTAAGCCAAGATGTCCCAT 5'& || ||.|||||| &5' ---------GGGACTGCAGGGT- 3' Zc3hc1 mmu-miR-136star beg:203 end:226 pic:3' TTCTGA--GTAAACTCTGCTACTA 5'& |||.| ||| ||.||||| &5' AAGGCCTGCATGT--GATGATGA- 3' Zc3hc1 mmu-miR-141 beg:322 end:343 pic:3' GGTAGAAATGGT-CTGTCACAAT 5'& ||||. . |.||||||| &5' ----CTTTGGTTCGGCAGTGTT- 3' Zc3hc1 mmu-miR-15a beg:155 end:176 pic:3' GTGTTTGGTAATAC-ACGACGAT 5'& . || || |||||||. &5' ----GGTCAGC-TGCTGCTGCTG 3' Zc3hc1 mmu-miR-15b beg:155 end:176 pic:3' ACATTTGGTACTAC-ACGACGAT 5'& . || || |||||||. &5' ----GGTCAGC-TGCTGCTGCTG 3' Zc3hc1 mmu-miR-16 beg:156 end:176 pic:3' GCGGTTATAAATGCACGACGAT 5'& |.||. |.| |||||||. &5' -GTCAGC---TGC-TGCTGCTG 3' Zc3hc1 mmu-miR-188-5p beg:0 end:20 pic:3' GGGAGGTGGTACGTTCCCTAC 5'& |||| | .| | ||||||| &5' -CCTCGAGTAGGGAAGGGAT- 3' Zc3hc1 mmu-miR-1906 beg:150 end:174 pic:3' TCGGGACGGAGTC--CGACGACGT 5'& ||.| |||| |||||||| &5' --CCTTTGGTCAGCTGCTGCTGC- 3' Zc3hc1 mmu-miR-1907 beg:150 end:172 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& |||. | || |||||||| &5' -CCTTTGG-TCAGCTGCTGCT- 3' Zc3hc1 mmu-miR-1907 beg:157 end:179 pic:3' TGGAGGTCTAGGA-GACGACGAG 5'& .||| | || ||||||.|| &5' ----TCAGCTGCTGCTGCTGTTC 3' Zc3hc1 mmu-miR-1934 beg:288 end:310 pic:3' TCTCCTGCTTCGTCCCCTGGTCT 5'& ||.|||| |||||| ..||| &5' AGGGGACT--GCAGGG--TTAGA 3' Zc3hc1 mmu-miR-193star beg:220 end:237 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& || | .|||||| &5' ------TGAA-GAGGAGACCC- 3' Zc3hc1 mmu-miR-193star beg:261 end:282 pic:3' AGTAGAACGG---GCGTT-TCTGGGT 5'& |. | ||. ||.|||| &5' -------GTAAGACACAGCAGGCCCA 3' Zc3hc1 mmu-miR-195 beg:153 end:176 pic:3' CGGTTATAAAGAC-ACGACGAT 5'& . .| ||| |||||||. &5' -TTGGTCAG-CTGCTGCTGCTG 3' Zc3hc1 mmu-miR-200b beg:331 end:343 pic:3' AGTAGTAATGGTCCGTCATAAT 5'& ||||||.|| &5' ------------GGCAGTGTT- 3' Zc3hc1 mmu-miR-200c beg:353 end:375 pic:3' AGGTAGTAA-TGGGCCGTCATAAT 5'& ||| |. .| ||||||| &5' ----TCAGCAATGTGACAGTATT- 3' Zc3hc1 mmu-miR-200c beg:327 end:343 pic:3' AGGTAGTAATGGGCCGTCATAAT 5'& . |||||||.|| &5' ---------GTTCGGCAGTGTT- 3' Zc3hc1 mmu-miR-204 beg:4 end:19 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& .|||| .|||||| &5' ----GTAGG-----GAAGGGA- 3' Zc3hc1 mmu-miR-20bstar beg:293 end:302 pic:3' GATCTTCACGAGTGTGACGTCA 5'& ||||||| &5' --------------ACTGCAG- 3' Zc3hc1 mmu-miR-21star beg:158 end:178 pic:3' CTGTCGGGTAGCTGACGACAAC 5'& ||||. | .|||||||| &5' --CAGCTG--CTGCTGCTGTT- 3' Zc3hc1 mmu-miR-23b beg:348 end:368 pic:3' CCATTAGGGACCGTTACACTA 5'& |||. |.| ||||||||| &5' -GTAG-CTCA-GCAATGTGA- 3' Zc3hc1 mmu-miR-28 beg:144 end:157 pic:3' GAGTTATCTGACACTCGAGGAA 5'& ||||.||||| &5' ------------TGAGTTCCTT 3' Zc3hc1 mmu-miR-2861 beg:261 end:282 pic:3' GGCGGGC-GG--CGGTCCGGGG 5'& |. | | | ||||||| &5' --GTAAGACACAG-CAGGCCC- 3' Zc3hc1 mmu-miR-30astar beg:34 end:49 pic:3' CGACGTTTGTAGGCTGACTTTC 5'& .||. |||||| &5' ---------GTCTCTCTGAAA- 3' Zc3hc1 mmu-miR-30estar beg:34 end:49 pic:3' CGACATTTGTAGGCTGACTTTC 5'& .||. |||||| &5' ---------GTCTCTCTGAAA- 3' Zc3hc1 mmu-miR-322 beg:150 end:176 pic:3' AGGTTTT--GTACTTAACGACGAC 5'& ||| || |||||||| &5' TCCTTTGGTCAGCTGCTGCTGCTG 3' Zc3hc1 mmu-miR-324-3p beg:319 end:341 pic:3' TCGTCGTGGACC---CCGTCACC 5'& |||.|| ..||| ||||||| &5' AGCGGC-TTTGGTTCGGCAGTG- 3' Zc3hc1 mmu-miR-330star beg:314 end:337 pic:3' AGAGACGTCCGGGACACGAAACG 5'& .|| || |||..|| |.| || &5' -TTCAGC-GGCTTTG-GTTCGGC 3' Zc3hc1 mmu-miR-339-5p beg:245 end:265 pic:3' GCACTCGAGGACCTCCTGTCCCT 5'& |||.| | . |||||||| &5' -GTGGGGTGT----GGACAGGG- 3' Zc3hc1 mmu-miR-342-3p beg:233 end:254 pic:3' TGCCCACGCTAA--AGACACACTCT 5'& |||| ||||||||.|. &5' -------CGATAGCTCTGTGTGGGG 3' Zc3hc1 mmu-miR-378star beg:278 end:296 pic:3' TGTGTCCTGGACCTCAGTCCTC 5'& ||| || ||||||.| &5' ---CAGTTCC----GTCAGGGG 3' Zc3hc1 mmu-miR-488 beg:47 end:69 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& |.||||.|| ||. || |.| &5' -ATCAAGGAA-AGTGTTCCGA 3' Zc3hc1 mmu-miR-497 beg:158 end:176 pic:3' ATGTTTGGTGTC-AC-ACGACGAC 5'& ||| || |||||||| &5' ---------CAGCTGCTGCTGCTG 3' Zc3hc1 mmu-miR-503star beg:354 end:376 pic:3' GGTCCGTCACCTTTGTTATGAG 5'& || ||| || .|||.||.|. &5' -CA-GCAATGT-GACAGTATTT 3' Zc3hc1 mmu-miR-541 beg:138 end:157 pic:3' TCACACTGGTTGTAGTCTTAGGGAA 5'& ||| .|| ||.|.|||| &5' --------CAA-GTCTGAGTTCCTT 3' Zc3hc1 mmu-miR-592 beg:257 end:275 pic:3' TGTAGTAGCGTATAACTGTGTTA 5'& || |.| ||||||. &5' ----CAGGGTAA---GACACAG- 3' Zc3hc1 mmu-miR-669g beg:345 end:366 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& |||| .|.| || .|||||. &5' --CATG-TAGCTCA-GCAATGT- 3' Zc3hc1 mmu-miR-670 beg:277 end:296 pic:3' AAGTGGTGTAT-GTGAGTCCCTA 5'& .|| || | ||||||. &5' ---GCC-CAGTTCCGTCAGGGG- 3' Zc3hc1 mmu-miR-673-3p beg:98 end:117 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||| ||| ||.||||| &5' -GTGA--AGAT----GCTCCGGA 3' Zc3hc1 mmu-miR-683 beg:255 end:279 pic:3' CTCCTGTGTCGAA---TGTCGTCC 5'& ||||| .|. |||||||| &5' --GGACAGGGTAAGACACAGCAGG 3' Zc3hc1 mmu-miR-696 beg:188 end:204 pic:3' GGGTGTCGTTCGTGTGCG 5'& .||| |||||.|| &5' -TCACT----GCACATGC 3' Zc3hc1 mmu-miR-741 beg:25 end:44 pic:3' AGATGTATCTTACCG-TAGAGAGT 5'& |||| .|||||| &5' -------AGAAATAGAGTCTCTC- 3' Zc3hc1 mmu-miR-743b-5p beg:331 end:350 pic:3' ACTACCTGTGGTCAGACTTGT 5'& |.|| . |||||.|| &5' -----GGCAGTGTTCTGAGCA 3' Zc3hc1 mmu-miR-871 beg:132 end:152 pic:3' GTACTGACCGTGATTAGACTTAT 5'& |||. || |.|||||.| &5' --TGATAA--ACAAGTCTGAGT- 3' Zc3hc1 mmu-miR-881star beg:26 end:46 pic:3' TCTACACTGACAA-TAGAGAGAC 5'& || .|||||||| &5' ------GAAATAGAGTCTCTCTG 3' Zc3hc1 mmu-miR-882 beg:32 end:45 pic:3' TGATTACGCGATTGAGAGAGGA 5'& .| ||||||. &5' -----------GAGTCTCTCT- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Zc3hc1; Nipa mmu-miR-100 165 204 -GUGU--------UCAAG-------CCUAGAUG-CCCAA- |||| ||||| ||| ||:| ||||| ACACAGCAGGCCCAGUUCCGUCAGGGGA-CUGCAGGGUUA Zc3hc1; Nipa mmu-miR-10a 165 203 -GUGU--------UUAAG-------CCUAGAUGUCCCAU |||| |:||| ||| ||:|||||| ACACAGCAGGCCCAGUUCCGUCAGGGGA-CUGCAGGGUU Zc3hc1; Nipa mmu-miR-10b 164 202 -UGUGU--------UUAAG------CCAAGAUGUCCC- ||||| |:||| || ||:||||| GACACAGCAGGCCCAGUUCCGUCAGGGGACUGCAGGGU Zc3hc1; Nipa mmu-miR-125a 169 202 GUGUCCAAU---------UUCCCAGA-GUCCCU :|||| |:||| || ||||| AGCAGGCCCAGUUCCGUCAGGGGACUGCAGGGU Zc3hc1; Nipa mmu-miR-125b 165 202 AGUGU--------UCAA------UCCCAGA-GUCCCU |||| |||| :||| || ||||| ACACAGCAGGCCCAGUUCCGUCAGGGGACUGCAGGGU Zc3hc1; Nipa mmu-miR-128a 121 149 -UUUUCUCUGGC----CAAGUGACACU- |:|:|||||| | || ||||: AAGAGGAGACCCGAUAGCUCUGUGUGGG Zc3hc1; Nipa mmu-miR-128b 122 149 CUUUCUCUGGC----CAAGUGACACU- :|:|||||| | || ||||: AGAGGAGACCCGAUAGCUCUGUGUGGG Zc3hc1; Nipa mmu-miR-133a 166 196 -UGUCGACCAACU--------UCCCCUGGUU ||||| || |||||||: CACAGCAGGCCCAGUUCCGUCAGGGGACUG- Zc3hc1; Nipa mmu-miR-133b 4 30 AUCGA--CCAA-CU----UCCCCUGGUU ||| || || |||||||: -UGCUCCGGACAGAACUGAGGGGACUU- Zc3hc1; Nipa mmu-miR-141 213 240 -GGUA---GAAAUGGU-CUGUCACAAU :|| ||||: : |:||||||| UUCAGCGGCUUUGGUUCGGCAGUGUUC Zc3hc1; Nipa mmu-miR-148a 219 244 -UGUU-UCAAGACAUCACGUGACU- :| :|||| | ||||: |||| GGCUUUGGUUCGGCAGUGUUCUGAG Zc3hc1; Nipa mmu-miR-149 145 181 -CCUCACUUCUGUGCC------------UCGG-UCU ||:||| :|||| || :||| || UGGGGUGUGGACAGGGUAAGACACAGCAGGCCCAGU Zc3hc1; Nipa mmu-miR-152 174 197 -GGGUUCAAGACAGUA-CGUGACU ||| ||||| |||| | |||| GCCC-AGUUCCGUCAGGGGACUGC Zc3hc1; Nipa mmu-miR-15a 35 73 GUGUUU---------------GGUAAUAC-ACGACGAU- ||||: :|| || |||||||: AACAAGUCUGAGUUCCUUUGGUCAGC-UGCUGCUGCUGU Zc3hc1; Nipa mmu-miR-15b 45 67 ACAUUUGGU-ACUACACGACGAU- || || ||:| ||||||: AGUU--CCUUUGGUCAGCUGCUGC Zc3hc1; Nipa mmu-miR-16 54 73 GCGGUUAUAAAUGCACGACGAU- |:||: |:| |||||||: GGUCAGC---UGC-UGCUGCUGU Zc3hc1; Nipa mmu-miR-17-3p 154 200 AUGUUCA-------------CGGG---AG---------UGACGUCA |||:| |||| || ||||||| GACAGGGUAAGACACAGCAGGCCCAGUUCCGUCAGGGGACUGCAGG Zc3hc1; Nipa mmu-miR-17-5p 4 33 -UGAUGGACG----UGACAUUCGUGAAAC- :|| || | |||| ::| |||||| UGCU-CCGGACAGAACUGAGGGGACUUUGA Zc3hc1; Nipa mmu-miR-187 146 170 GGCCGACG-UUGU---GUUCUGUGCU || ||: :||| :||||||| -GGGGUGUGGACAGGGUAAGACACA- Zc3hc1; Nipa mmu-miR-188 173 194 -UGGGAGGUGGUACGUUCCCUAC :||| : ||:| ||:|||| GGCCCAGUUCCGU-CAGGGGAC- Zc3hc1; Nipa mmu-miR-192 39 61 ACAG--UUAAGUAU-CCAGUC- ||| |:||| |||||| AGUCUGAGUUCCUUUGGUCAGC Zc3hc1; Nipa mmu-miR-200a 219 240 -UGUAGCAAUGGUCUGUCACAAU :| |:| :|:| ||||||| GGCUUUGGU-UCGG-CAGUGUUC Zc3hc1; Nipa mmu-miR-200c 209 240 -GGU-AGUAA-UGG------GCCGUCAUAAU ||| ||| :|: |||||||:|| CCCAUUCAGCGGCUUUGGUUCGGCAGUGUUC Zc3hc1; Nipa mmu-miR-204 107 130 GUCCGUAUCCUACUGUUUC-CCUU- ||||: |||||::||| |||: --UGCAUGUGAUGAUGAAGAGGAGA Zc3hc1; Nipa mmu-miR-207 156 198 CUCCC-----------UCC---UCU---CGGUCCUCUU-CG |||| ||| || |:||||:|| || CAGGGUAAGACACAGCAGGCCCAGUUCCGUCAGGGGACUGCA Zc3hc1; Nipa mmu-miR-210 55 98 -AGUCGGCGAC--------------AGU-----GUG-CGUGUC |||||:|||| || ||| ||||| GUCAGCUGCUGCUGCUGUUCUUCAUUCUGGUUUCACUGCACAU Zc3hc1; Nipa mmu-miR-211 101 130 -UCCGUUU---C-CUACUGUUUC-CCUU- |||| | |||||::||| |||: AAGGCCUGCAUGUGAUGAUGAAGAGGAGA Zc3hc1; Nipa mmu-miR-214 89 115 -GACGG--ACAGACA-CGGACG-ACA- |||| || | |||||| ||| ACUGCACAUG-CGAAGGCCUGCAUGUG Zc3hc1; Nipa mmu-miR-217 225 251 -UAGGUCAGUCA-AGGACUACGU-CAU- :|:|:| |||| |:|||| ||| ||| GGUUCGG-CAGUGUUCUGA-GCAUGUAG Zc3hc1; Nipa mmu-miR-221 211 246 UUUGGGUCGUC----------UGUUACA----UCGA |::||||:| :||:||| ||| -CAUUCAGCGGCUUUGGUUCGGCAGUGUUCUGAGCA Zc3hc1; Nipa mmu-miR-222 125 158 -CUCUGGGUCAUCGG-------UCUACAUC-GA |||||||: ||||: :|:|||:| | GGAGACCCGAUAGCUCUGUGUGGGGUGUGGACA Zc3hc1; Nipa mmu-miR-23b 246 265 CCAUUAGGGACCGUUACACUA |||: |:| ||||||||| UGUAG-CUCA-GCAAUGUGAC Zc3hc1; Nipa mmu-miR-28 17 54 -GAGUUAUCUGAC-------------ACUCGAGGAA- || | :|||| ||||:||||| ACUGAGGGGACUUUGAUAAACAAGUCUGAGUUCCUUU Zc3hc1; Nipa mmu-miR-292-3p 210 237 UGUGAGUU-UUG-GACCG--CCGUGAA ||:|||: ::| :|||: |||| | CCAUUCAGCGGCUUUGGUUCGGCAGUG Zc3hc1; Nipa mmu-miR-293 191 223 UGUGAUGUU-------------UGAGACGCCGUGA |||:||: |:|| ||||| -GACUGCAGGGUUAGAACACCCAUUCAGCGGCU-- Zc3hc1; Nipa mmu-miR-29b 34 64 -UUGU---GACUAAAGUUUACCA--CGAU- |||| |||| ||| |||| |||: AAACAAGUCUGAGUUCCUUUGGUCAGCUGC Zc3hc1; Nipa mmu-miR-30a-3p 4 26 -CGACGUUUGUAGGCUGACUUUC- ||| |::||| |||||::| UGCUCCGGACAGA--ACUGAGGGG Zc3hc1; Nipa mmu-miR-30b 135 159 -UCGACUCACAUCCUACAAAUGU- |||| ||||:||:||| ||| UAGCUCUGUGUGGGGUGUGGACAG Zc3hc1; Nipa mmu-miR-32 246 270 -CGUUGAAUCAUUACAC-GUUAU- |:|:|| || |||||| ||:|| UGUAGCUCAGCAAUGUGACAGUAU Zc3hc1; Nipa mmu-miR-324-3p 213 238 -GGUCGUCGUGGACC---CCGUCACC :||||:|| ::||| ||||||| UUCAGCGGC-UUUGGUUCGGCAGUGU Zc3hc1; Nipa mmu-miR-324-5p 130 155 GUGGUUA-CGGGAU-C-CCCUACGC- ||:|| ||:||: | |||:||:| -CCCGAUAGCUCUGUGUGGGGUGUGG Zc3hc1; Nipa mmu-miR-326 151 191 UGACCU---CC-UUC--------CCGGGUC-------UCC |||| || ||| ||||||| ||| -GUGGACAGGGUAAGACACAGCAGGCCCAGUUCCGUCAGGG Zc3hc1; Nipa mmu-miR-328 151 181 UGCCU-UCCCG-UCU----C-UCCCGGUC- :||| ||||: ||| | ||| |||| GUGGACAGGGUAAGACACAGCAGGCCCAGU Zc3hc1; Nipa mmu-miR-329 119 155 -UUUUUCCA-------AUCGA-------CCCACACAA :||:||| ||||| ||||||| UGAAGAGGAGACCCGAUAGCUCUGUGUGGGGUGUGG- Zc3hc1; Nipa mmu-miR-330 192 227 AGAGACGUCC---------GGGACA-----CGAAACG ||||||| ||| |||||| --ACUGCAGGGUUAGAACACCCAUUCAGCGGCUUUGG Zc3hc1; Nipa mmu-miR-331 156 193 AAGAUCCUA----------UCCGGG---------UCCCCG |||:| |||||| ||||| ---CAGGGUAAGACACAGCAGGCCCAGUUCCGUCAGGGGA Zc3hc1; Nipa mmu-miR-339 135 162 ACUCGAGGA-----CCU--CCUGUCCCU |||||: || |||||||| -UAGCUCUGUGUGGGGUGUGGACAGGGU Zc3hc1; Nipa mmu-miR-342 124 151 CUGCC-CAC-GCUAA--AGACACACUCU- || | |||| ||||||||:|: --AGGAGACCCGAUAGCUCUGUGUGGGGU Zc3hc1; Nipa mmu-miR-345 185 206 CGUGACCUGAUC-CCCAGUCGU || |||||: ||||:|| UCAGGGGACUGCAGGGUUAGA- Zc3hc1; Nipa mmu-miR-346 145 169 UCUCCGU-CCGUGAGCCCGUCUGU- |:||:: || || || ||||| UGGGGUGUGG-ACAGGGUAAGACAC Zc3hc1; Nipa mmu-miR-34a 150 178 -UUGUUGGUCGAUUCUGUGA----CGGU : :|| :| |||||||| ||| UGUGGACAGGGUAAGACACAGCAGGCCC Zc3hc1; Nipa mmu-miR-34c 53 75 CGUUAGUCGAUUGAUG-UGACGGA ::||||||: ||:| :|||:: -UGGUCAGCUG-CUGCUGCUGUUC Zc3hc1; Nipa mmu-miR-351 170 193 -GUCCGAGUUUCCCGAGG-AGUCCCU- ||||| || |:||| ||||||: GCAGGCCCA----GUUCCGUCAGGGGA Zc3hc1; Nipa mmu-miR-361 3 37 CAUGGGGA-----------CCUCUAAGACUAUU- |:|:|| ||:|| |:|||||| AUGCUCCGGACAGAACUGAGGGGACUUUGAUAAA Zc3hc1; Nipa mmu-miR-370 190 223 -UUGG---UCCAAG---GUGGG---GUCGUCCG- :||: :|||| ||||| |||| ||| GGACUGCAGGGUUAGAACACCCAUUCAGC-GGCU Zc3hc1; Nipa mmu-miR-377 97 121 -UGUUUUCAACGGAA--ACAC-ACUA- :|:|| |||| |||| |||| UGCGAAG---GCCUGCAUGUGAUGAUG Zc3hc1; Nipa mmu-miR-378 164 193 -UGUGUC--CUGGACCU---CAGUCCUC- |||||| |:|| ||||||:| GACACAGCAGGCCCAGUUCCGUCAGGGGA Zc3hc1; Nipa mmu-miR-380-5p 45 63 CGCGUACAAGAU-ACCAGUUGGU |||| ||||||:|: -----AGUUCCUUUGGUCAGCUG Zc3hc1; Nipa mmu-miR-412 147 166 UGCCGAUCACCUGGUCCACUUCA ||: |||||| :||| ||| -GGGU--GUGGACAGGGU-AAGA Zc3hc1; Nipa mmu-miR-424 26 70 AGGU----UUUGU----ACUUA-------------ACGACGAC |: ||||| |||:| |||||||| ACUUUGAUAAACAAGUCUGAGUUCCUUUGGUCAGCUGCUGCUGC Zc3hc1; Nipa mmu-miR-429 216 240 -UGCCGUAAUGGU-CUGUCAUAAU :|||| ||: : |:||||:|| AGCGGCUUUGGUUCGGCAGUGUUC Zc3hc1; Nipa mmu-miR-431 89 117 GGACGU--ACUG--CCGGACGUUCUGU- ||||| || |||||||| | | ACUGCACAUGCGAAGGCCUGCAUGUGAU Zc3hc1; Nipa mmu-miR-450b 184 202 AUAAGUCCUUGUAUGACGUUUU- |||||:: ||||||::: --GUCAGGGG---ACUGCAGGGU Zc3hc1; Nipa mmu-miR-455-3p 147 199 -UCACAUA-----UA------------CGGG-CA---------CCUGACGUA :||||: :| |||| || |||||||| GGGUGUGGACAGGGUAAGACACAGCAGGCCCAGUUCCGUCAGGGGACUGCAG Zc3hc1; Nipa mmu-miR-468 162 190 GUCUGUGUGCGU----------GUAGUCAGUAU ||||||| ||| |:|||| AAGACACA-GCAGGCCCAGUUCCGUCAGG---- Zc3hc1; Nipa mmu-miR-485-5p 43 66 -CUUAAGUAGUGCCGGUCGGAGA- ||:||| :||:||||: || UGAGUUCCUU-UGGUCAGCUGCUG Zc3hc1; Nipa mmu-miR-486 155 192 GAGCCCCG-----------UCGAGUCAU----GUCCU- | |||: :|| |||| ||||: -ACAGGGUAAGACACAGCAGGCCCAGUUCCGUCAGGGG Zc3hc1; Nipa mmu-miR-490 167 191 -GUCGUACC---UCAGGA-GGUCCAAC ||||| || |||:| :|||| ACAGCA-GGCCCAGUUCCGUCAGGG-- Zc3hc1; Nipa mmu-miR-497 35 70 AUGUUUGGUGUCA-----------C-ACGACGAC- ||||::| ||| | |||||||| AACAAGUCUGAGUUCCUUUGGUCAGCUGCUGCUGC Zc3hc1; Nipa mmu-miR-500 41 65 -GACUU--GGGAACGGGUCCACGUA ||||: ||:||| :||| ||| UCUGAGUUCCUUUGGUCAGCUGCU- Zc3hc1; Nipa mmu-miR-503 38 67 CGUCAUGA--CAAGGG-------CGACGAU- ||| || |||||: ||||||: -AAGU-CUGAGUUCCUUUGGUCAGCUGCUGC Zc3hc1; Nipa mmu-miR-505 99 122 UCUUUUGGUCGUUCACAACUGC- |||::|| ||| ||| |||:| CGAAGGCCUGCAUGUGAUGAUGA Zc3hc1; Nipa mmu-miR-532 81 110 UGCCAG---GAUGUGA--G-UUCCGUAC- :|||: ||:||| | ||||| || CUGGUUUCACUGCACAUGCGAAGGCCUGC Zc3hc1; Nipa mmu-miR-615 120 157 -UUCUCCCUCUGGG--------------UCCGAGCCU- |||| |||||||| :||: :||| GAAGA-GGAGACCCGAUAGCUCUGUGUGGGGUGUGGAC Zc3hc1; Nipa mmu-miR-666 82 111 -CCGAGA----GUGU-CGACA-CGGGCGA ||:|: |||| || |||:|| UGGUUUCACUGCACAUGCGAAGGCCUGCA Zc3hc1; Nipa mmu-miR-667 144 163 GAACCCGACCCACC-GUCCACAGU |||| | |||| |||| || -GUGGGGU--GUGGACAGG-GUA- Zc3hc1; Nipa mmu-miR-669a 150 173 UGUACUUGUA-CGUG-UGUGUUGA :||:||| |:| |||||:| -UGUGGACAGGGUAAGACACAGCA Zc3hc1; Nipa mmu-miR-674* 234 264 AACAAGACUC-UACCC----UCG--ACAC- ||||||||| ||| ||| |||| GUGUUCUGAGCAUGUAGCUCAGCAAUGUGA Zc3hc1; Nipa mmu-miR-676* 230 252 -CGUU-CAGGAUUCCAACAUCUCA |||: ||:||:|| ||||| GGCAGUGUUCUGAGCAUGUAGC-- Zc3hc1; Nipa mmu-miR-678 5 25 GGAGGUCAGGAACGUGGCUCUG ||||:| | ||:|||: GCUCCGGACAGA--ACUGAGGG Zc3hc1; Nipa mmu-miR-681 82 107 -UCGACG-GACG-GU-CGC-UCCGAC :|:| | |||| || ||| |||| UGGUUUCACUGCACAUGCGAAGGCC- Zc3hc1; Nipa mmu-miR-682 170 200 -GUCUGA--------AGUGACACUGACGUC- |||:| ||| | |||||||| GCAGGCCCAGUUCCGUCAGGG-GACUGCAGG Zc3hc1; Nipa mmu-miR-683 152 176 CUCCUGUGUCGAA---UGUCGUCC- ||||| :|: |||||||| -UGGACAGGGUAAGACACAGCAGGC Zc3hc1; Nipa mmu-miR-689 172 195 CCUGGGGC--GGCUCGCCCCUGC |:||| ||| |||||| AGGCCCAGUUCCGUCAGGGGACU Zc3hc1; Nipa mmu-miR-693-5p 132 158 -CUUUUGAA----AGCCUACACC-GAC || |:|| | ||:||||| | CGAUAGCUCUGUGUGGGGUGUGGACA- Zc3hc1; Nipa mmu-miR-695 155 183 AAGUCA------GUGGAUA-CGGGUUAGA ||| ||| |||||:|: -ACAGGGUAAGACACAGCAGGCCCAGUUC Zc3hc1; Nipa mmu-miR-701 209 224 AGGUAGAUAAAGUCGCCGAUU |||| ||||||||| CCCAU-----UCAGCGGCUU- Zc3hc1; Nipa mmu-miR-702 143 164 CUCGCCCCAUUUCCCA-CCCGU- |:|||||: || |||:| -UGUGGGGUGU-GGACAGGGUAA Zc3hc1; Nipa mmu-miR-712 178 202 CCAUGGCGGGCCCACU----UCCUC || |||:| ||| || |||: AGUUCCGUCAGGG-GACUGCAGGGU Zc3hc1; Nipa mmu-miR-713 58 96 -CGAC-AC-ACGG---------------AAGUCACGU- |||| || |||: |||| |||| AGCUGCUGCUGCUGUUCUUCAUUCUGGUUUCACUGCAC Zc3hc1; Nipa mmu-miR-717 121 150 -UCUCUUCCAUA-----GAGACAGACUC- ||||:|| |||||| ||:| AAGAGGAGACCCGAUAGCUCUGUGUGGGG Zc3hc1; Nipa mmu-miR-761 52 74 -ACACAGUCAAAGUGGGACGACG- || ||||| | | |||||: UUG-GUCAGCUGCUGC-UGCUGUU Zc3hc1; Nipa mmu-miR-762 136 185 -CGAGACA------------GGGCCG-------------GGGUCGGGG ||||||| | ||: |||||::|| AGCUCUGUGUGGGGUGUGGACAGGGUAAGACACAGCAGGCCCAGUUCCG Zc3hc1; Nipa mmu-miR-763 61 86 -CGGUGAC--CAAGAAGGGUCGACC- ||::||| ||||||| |||| UGCUGCUGCUGUUCUUCAUU-CUGGU Zc3hc1; Nipa mmu-miR-764-3p 56 93 UGUCAACGGUGAU-------------ACCGGAG-GA- ||| |||::||: |||::|| || UCAGCUGCUGCUGCUGUUCUUCAUUCUGGUUUCACUG Zc3hc1; Nipa mmu-miR-770-3p 175 198 -GGUCGAGGUGCAGUCCG--GGUGC ||||:||| |||||| |::| CCCAGUUCC--GUCAGGGGACUGCA Zc3hc1; Nipa mmu-miR-801 227 261 CAGCU-----AAGG--CGUGCGU---GUCGUUAG |||: |||: |||:|:| ||||||| UUCGGCAGUGUUCUGAGCAUGUAGCUCAGCAAUG Zc3hc1; Nipa mmu-miR-10a 155 162 G----------------UGUUUA--AGCCUAGA--UGUCCCAU :| | ||:| |||||||| GAAGAGGAGACCCGAUAGCUCUGUGUGGGGUGUGGACAGGGUAA Zc3hc1; Nipa mmu-miR-141 232 239 -------------GGUA-------GAAAUGGU-CUGUCACAAU |||| ||||: : |:||||||| AGGGUUAGAACACCCAUUCAGCGGCUUUGGUUCGGCAGUGUUC Zc3hc1; Nipa mmu-miR-15a 61 68 G---------UGUUUGGUAAUAC------------ACGACGAU |||| | |||||||: ACUUUGAUAAACAAGUCUGAGUUCCUUUGGUCAGCUGCUGCUGC Zc3hc1; Nipa mmu-miR-15a 64 71 GUGU---------------------UUGGUAAUAC-ACGACGAU : || || |||||||: UUGAUAAACAAGUCUGAGUUCCUUUGGUCAGC-UGCUGCUGCUGU Zc3hc1; Nipa mmu-miR-15b 61 68 -----------------ACAUUUGGU-ACUAC---ACGACGAU || : || ||:| |||||||: ACUUUGAUAAACAAGUCUGAGUUCCUUUGGUCAGCUGCUGCUGC Zc3hc1; Nipa mmu-miR-15b 64 71 ACAU---------------------UUGGUACUAC-ACGACGAU : || || |||||||: UUGAUAAACAAGUCUGAGUUCCUUUGGUCAGC-UGCUGCUGCUGU Zc3hc1; Nipa mmu-miR-16 61 68 GC---------------------GGUUAUAAA-UGCACGACGAU || |: :| |||||||: ACUUUGAUAAACAAGUCUGAGUUCCUUUGGUCAGC-UGCUGCUGC Zc3hc1; Nipa mmu-miR-16 64 71 G-------------------------CGGUUAUAAAUGCACGACGAU |:||: |:| |||||||: UUGAUAAACAAGUCUGAGUUCCUUUGGUCAGC---UGC-UGCUGCUGU Zc3hc1; Nipa mmu-miR-17-3p 192 199 A---------UGUUCA-CGGG---AG---------UGACGUCA |||: |||| || ||||||| AGGGUAAGACACAGCAGGCCCAGUUCCGUCAGGGGACUGCAGG Zc3hc1; Nipa mmu-miR-195 61 68 C----------------------GGUUAUAAAGACACGACGAU || |: |||||||: ACUUUGAUAAACAAGUCUGAGUUCCUUUGGUCAGCUGCUGCUGC Zc3hc1; Nipa mmu-miR-195 64 71 C-------------------GGUUAUAAA--GAC-ACGACGAU || |: ||| |||||||: UUGAUAAACAAGUCUGAGUUCCUUUGGUCAGCUGCUGCUGCUGU Zc3hc1; Nipa mmu-miR-200a 232 239 -----------------------UGUAGCAAUGGUCUGUCACAAU :| |:| :| |:||||||| AGGGUUAGAACACCCAUUCAGCGGCUUUGGU-UC-GGCAGUGUUC Zc3hc1; Nipa mmu-miR-221 245 252 U--------------UUGGGUCGUC--------UGUUACAUCGA :: |:|||| :| |||||||| CCAUUCAGCGGCUUUGGUUCGGCAGUGUUCUGAGC-AUGUAGCUC Zc3hc1; Nipa mmu-miR-222 245 252 CUCUGGGUCAUCGG-------------------UC-UACAUCGA |::||| ||: || |||||||| CC-AUUCAGCGGCUUUGGUUCGGCAGUGUUCUGAGCAUGUAGCUC Zc3hc1; Nipa mmu-miR-23a 257 264 --------CCUUUA-GGGAC-------------CGUUACACUA || |:| ::||| ||||||||| UUUGGUUCGGCAGUGUUCUGAGCAUGUAGCUCAGCAAUGUGAC Zc3hc1; Nipa mmu-miR-23b 257 264 C------------------------CAUUAGGGACCGUUACACUA |||: |:| ||||||||| UUUGGUUCGGCAGUGUUCUGAGCAUGUAG-CUCA-GCAAUGUGAC Zc3hc1; Nipa mmu-miR-324-3p 230 237 -------------------GGUCGUCGUGGACC---CCGUCACC :||||:|| ::||| ||||||| GCAGGGUUAGAACACCCAUUCAGCGGC-UUUGGUUCGGCAGUGU Zc3hc1; Nipa mmu-miR-339 154 161 AC---------------UCGAGGA-----CCU--CCUGUCCCU |||||: || |||||||| UGAAGAGGAGACCCGAUAGCUCUGUGUGGGGUGUGGACAGGGU Zc3hc1; Nipa mmu-miR-345 54 61 CGUGACCUGAUCC----------------------CCAGUCGU ||||| ||||||| UGAGGGGACUUUGAUAAACAAGUCUGAGUUCCUUUGGUCAGCU Zc3hc1; Nipa mmu-miR-370 168 175 ---------------------UUGGUCCAAGGUGGGGUCGUCCG :|| :||| || |||||||| GAUAGCUCUGUGUGGGGUGUGGACAGGGUAAGACA-CAGCAGGCC Zc3hc1; Nipa mmu-miR-424 61 68 ----------------------AGGUUUUGUACUUAACGACGAC ||| |||||||| ACUUUGAUAAACAAGUCUGAGUUCCUUUGGUCAGC-UGCUGCUGC Zc3hc1; Nipa mmu-miR-424 64 71 -------------------AGGUUUU--GUACUUAACGACGAC ||| || |||||||| UUGAUAAACAAGUCUGAGUUCCUUUGGUCAGCUGCUGCUGCUGU Zc3hc1; Nipa mmu-miR-455-3p 191 198 UCACAUAUA---------CGGG-CA---------CCUGACGUA |||| || |||||||| CAGGGUAAGACACAGCAGGCCCAGUUCCGUCAGGGGACUGCAG Zc3hc1; Nipa mmu-miR-497 61 68 A---------UGUUUGGU-------------GUCACACGACGAC |||| | ||| |||||||| ACUUUGAUAAACAAGUCUGAGUUCCUUUGGUCAGC-UGCUGCUGC Zc3hc1; Nipa mmu-miR-497 64 71 A------UGUUUGGU-------------GUC-AC-ACGACGAC |||| | ||| || |||||||| UUGAUAAACAAGUCUGAGUUCCUUUGGUCAGCUGCUGCUGCUGU Zc3hc1; Nipa mmu-miR-682 191 198 ---------------GUCUGA--------AGUGACACUGACGUC |||:| ||| | |||||||| CAGGGUAAGACACAGCAGGCCCAGUUCCGUCAGGG-GACUGCAGG Zc3hc1; Nipa mmu-miR-683 167 174 -------------------CUCCUGUGUCGAA---UGUCGUCC | ||||| :|: |||||||| CGAUAGCUCUGUGUGGGGUGUGGACAGGGUAAGACACAGCAGGC Zc3hc1; Nipa mmu-miR-801 253 260 C----AGCUAAGGCGUG---------------CGUGUCGUUAG |:|:||| ||| || ||||||| CGGCUUUGGUUCGGCAGUGUUCUGAGCAUGUAGCUCAGCAAUG Zc3hc1; Nipa mmu-miR-100 174 202 guGUUCAAG------CCUAGAUG-CCCAA | ||||| ||: ||:| ||||| gcCCAGTTCCGTCAGGGGACTGCAGGGTT Zc3hc1; Nipa mmu-miR-10a 138 162 guguuuaAGCCUAGA--UGUCCCAU | ||:| | |||||||| ctctgtgTGGGGTGTGGACAGGGTA Zc3hc1; Nipa mmu-miR-10a 174 202 guGUUUAAG------CCUAGAUGUCCCAu | |:||| ||: ||:|||||| gcCCAGTTCCGTCAGGGGACTGCAGGGTt Zc3hc1; Nipa mmu-miR-10b 173 200 uguGUUUAAG------CCAAGAUGUCCC | |:||| || ||:||||| ggcCCAGTTCCGTCAGGGGACTGCAGGG Zc3hc1; Nipa mmu-miR-125a 175 201 GUGUCCA---AUUUCCCAGA-GUCCCu | ||| | | |:||| || ||||| CCCAGTTCCGTCAGGGGACTGCAGGGt Zc3hc1; Nipa mmu-miR-125b 173 201 aguGUUCAA------UCCCAGA-GUCCCu | |||| :||| || ||||| ggcCCAGTTCCGTCAGGGGACTGCAGGGt Zc3hc1; Nipa mmu-miR-128a 122 145 UUUUCUCUGGCCAA--GUGACACu |:|:|||||| | | | ||||| AGAGGAGACCCGATAGCTCTGTGt Zc3hc1; Nipa mmu-miR-133a 167 196 UGUCGAC-----CAA--C-UUCCCCUGguu ||||| | ||| | ||||||| ACAGCAGGCCCAGTTCCGTCAGGGGACtgc Zc3hc1; Nipa mmu-miR-133b 11 30 aucgaccaACUUCCCCUGguu || ||||||| gacagaacTG-AGGGGACttt Zc3hc1; Nipa mmu-miR-141 217 239 gGUAGAAA-UGGUCUGUCACAAu |: |||| ::: |:||||||| gCGGCTTTGGTTCGGCAGTGTTc Zc3hc1; Nipa mmu-miR-148a 221 242 uguuuCAAGACAUCACGUGACU |||| | ||||: |||| ctttgGTTCGGCAGTGTTCTGA Zc3hc1; Nipa mmu-miR-149 157 180 cCUCACUUCUGUG-C--CUCGGUCu |:|| ||||||| | |: |||| aGGGT-AAGACACAGCAGGCCCAGt Zc3hc1; Nipa mmu-miR-152 175 196 GGGUUCAAGACAGU-ACGUGACu ||| ||||| |||| | |||| CCC-AGTTCCGTCAGGGGACTGc Zc3hc1; Nipa mmu-miR-15a 49 71 guguuugguaauAC-ACGACGAu || ||||||| cctttggtcagcTGCTGCTGCTg Zc3hc1; Nipa mmu-miR-15b 50 71 acAUUUGGUACUAC-ACGACGAu | :::|| | || ||||||| ctTTGGTCA-GCTGCTGCTGCTg Zc3hc1; Nipa mmu-miR-16 47 68 gcGGUUAUAAAUGCACGACGAu || |: | | ||||||| ttCCTTTGGTCAGCTGCTGCTg Zc3hc1; Nipa mmu-miR-17-3p 174 199 auGUUCACGGGAG-----UGACGUCa | ||| || || ||||||| gcCCAGTTCCGTCAGGGGACTGCAGg Zc3hc1; Nipa mmu-miR-17-5p 5 31 uGAUG---GACGUGACAUUCGUGAAAC || | | | |||| ::| |||||| gCTCCGGACAGAACTGAGGGGACTTTG Zc3hc1; Nipa mmu-miR-187 145 170 ggCCGACG-UUGU---GUUCUGUGcu || ||: :||| :||||||| tgGGGTGTGGACAGGGTAAGACACag Zc3hc1; Nipa mmu-miR-188 174 194 uGGGAGGUGGUACGUUCCCUac ||| : ||:| ||:|||| gCCCAGTTCCGT-CAGGGGAct Zc3hc1; Nipa mmu-miR-195 50 71 cgguuauaaaGAC-ACGACGAu ||| ||||||| ctttggtcagCTGCTGCTGCTg Zc3hc1; Nipa mmu-miR-200a 220 239 uGUAGCAAUGGUCUGUCACAAu | |:| | | |:||||||| gCTTTGGTTC--GGCAGTGTTc Zc3hc1; Nipa mmu-miR-200c 217 239 gGUAGUAA-UGGGCCGUCAUAAu |: | || :::|||||||:|| gCGGCTTTGGTTCGGCAGTGTTc Zc3hc1; Nipa mmu-miR-204 105 128 gucCGUAUCCUACUGUUUC-CCUu ||||: |||||::||| ||| cctGCATGTGATGATGAAGAGGAg Zc3hc1; Nipa mmu-miR-207 142 165 CUCCCUCCUC-UCGGUCCUCUUCg | | |:|| | :| ||||: ||| GTGTGGGGTGTGGACAGGGTAAGa Zc3hc1; Nipa mmu-miR-210 76 97 AGUCGGCGACAGUGUG-CGUGUc ||| :| : ||: ||| ||||| TCATTC-TGGTTTCACTGCACAt Zc3hc1; Nipa mmu-miR-211 106 128 ucCGUUUCCUACUGUUUC-CCUu ||| : |||||::||| ||| ctGCATGTGATGATGAAGAGGAg Zc3hc1; Nipa mmu-miR-214 90 113 GACG-G-ACAGACACGGACG-ACA |||| | || |||||| ||| CTGCACATGCGAAGGCCTGCATGT Zc3hc1; Nipa mmu-miR-217 226 252 uAGGUCAGUCA-AGGAC---UACGUCau |:|:| |||| |:||| |||:|| gTTCGG-CAGTGTTCTGAGCATGTAGct Zc3hc1; Nipa mmu-miR-221 227 252 uuuggGUC----GUCUGUUACAUCGA ||| | || |||||||| ttcggCAGTGTTCTGAGCATGTAGCT Zc3hc1; Nipa mmu-miR-222 226 252 cucuggGUCAUCGG--UC-UACAUCGA ||||: :| || |||||||| gttcggCAGTGTTCTGAGCATGTAGCT Zc3hc1; Nipa mmu-miR-222 126 149 CUCUGGGUCAUCGGUCUACAUCga |||||||: ||||: :|||:| GAGACCCGATAGCTCTGTGTGGgg Zc3hc1; Nipa mmu-miR-23a 245 264 ccuuUAGGGACCGUUACACUa | |:| ||||||||| atgtAGCTC-AGCAATGTGAc Zc3hc1; Nipa mmu-miR-23b 246 264 cCAUUAGGGACCGUUACACUa |||: |:| ||||||||| tGTAG-CTC-AGCAATGTGAc Zc3hc1; Nipa mmu-miR-28 28 52 gAGUUAUCUG---ACACUCGAGGAA |::||| || | ||||:||||| tTTGATAAACAAGTCTGAGTTCCTT Zc3hc1; Nipa mmu-miR-293 204 224 ugUGAUGUUUGAGACGCCGuga || || |:|| ||||| gaAC-ACCCATTCAGCGGCttt Zc3hc1; Nipa mmu-miR-29b 35 62 UUGU---GACUAAAGUUUACCA--CGAu |||| |||| ||| |||| ||| AACAAGTCTGAGTTCCTTTGGTCAGCTg Zc3hc1; Nipa mmu-miR-30a-3p 5 24 CGACGUUUGUAGGC-UGACUUUC ||| |::||| | |||||::| GCTCCGGACA---GAACTGAGGG Zc3hc1; Nipa mmu-miR-30b 136 157 UCGACUCACAUCCUACAAAUGU |||| ||||:||:||| ||| AGCTCTGTGTGGGGTGTGGACA Zc3hc1; Nipa mmu-miR-32 247 268 CGUUGAAUCAUUACAC-GUUAU |:|:|| || |||||| ||:|| GTAGCTCAGCAATGTGACAGTA Zc3hc1; Nipa mmu-miR-324-3p 214 237 gGUCGUCGUGGACC---CCGUCACc ||||:|| ::||| ||||||| tCAGCGGC-TTTGGTTCGGCAGTGt Zc3hc1; Nipa mmu-miR-324-5p 129 153 guGGUUA-CGGGAU-C-CCCUACGC ||:|| ||:||: | |||:||:| acCCGATAGCTCTGTGTGGGGTGTG Zc3hc1; Nipa mmu-miR-326 155 182 UGACC--UCCU---UC--CCGGGUCucc || || | || || ||||||| ACAGGGTAAGACACAGCAGGCCCAGttc Zc3hc1; Nipa mmu-miR-328 157 179 UGCCUUCCCGUCUC-UCCCGGUC | || | | || || ||| |||| AGGGTAAGACACAGCAGGCCCAG Zc3hc1; Nipa mmu-miR-329 127 155 uuuuucCAAUCGA-------CCCACACaa | ||||| ||||||| agacccGATAGCTCTGTGTGGGGTGTGga Zc3hc1; Nipa mmu-miR-330 190 226 agaGACGUCC---------GGG--A--C-ACGAAACg ||||||| ||| | | |||||| ggaCTGCAGGGTTAGAACACCCATTCAGCGGCTTTGg Zc3hc1; Nipa mmu-miR-331 172 192 aagauccuauccggGUCCCCg |||||| aggcccagttccgtCAGGGGa Zc3hc1; Nipa mmu-miR-331 142 162 aAGAUCCUAUCCGGGUCCCcg | |:||:|: | ||||| gTGTGGGGTGTGGACAGGGta Zc3hc1; Nipa mmu-miR-339 134 161 acUCGAGG---ACCU----CCUGUCCCu |||||: |||: |||||||| atAGCTCTGTGTGGGGTGTGGACAGGGt Zc3hc1; Nipa mmu-miR-342 120 149 CUGC-CCAC---GCUA--AAGACACACUCu || | || | |||| ||||||||:| GAAGAGGAGACCCGATAGCTCTGTGTGGGg Zc3hc1; Nipa mmu-miR-345 41 61 cgugaccugauccCCAGUCGu ||||||| tctgagttcctttGGTCAGCt Zc3hc1; Nipa mmu-miR-345 185 206 cGUGACCUGAU-CCCCAGUCgu || |||||: ||||:|| tCAGGGGACTGCAGGGTTAGaa Zc3hc1; Nipa mmu-miR-346 157 176 UCUCCGUCCGUGAGCCCGUCUGu ||:| || ||| ||||:| AGGGTAAGACACA---GCAGGCc Zc3hc1; Nipa mmu-miR-34a 151 173 uuguUGGUCGAUUCUGUGACGgu || :| |||||||| || gtggACAGGGTAAGACACAGCag Zc3hc1; Nipa mmu-miR-34c 72 95 cguuAGU-CGAUUGAUGUGACGga ||| ||:::| |||||| ttctTCATTCTGGTTTCACTGCac Zc3hc1; Nipa mmu-miR-351 171 191 GUCCGAGUUUCCCGAGG-AGUCCCu ||||| || |:||| |||||| CAGGCCCA----GTTCCGTCAGGGg Zc3hc1; Nipa mmu-miR-361 14 35 caUGGGGACCUCUAAGACUAUU | |: ||:|| |:|||||| agAACTGAGGGGACTTTGATAA Zc3hc1; Nipa mmu-miR-370 153 175 uugGUCCAAGGUGGGGUCGUCCG |||| | : | |||||||| ggaCAGGGTAAGACACAGCAGGC Zc3hc1; Nipa mmu-miR-370 174 200 uuGGUCCAAGGUGG-----GGUCGUCCg ||| |||||::| | ||||| gcCCA-GTTCCGTCAGGGGACTGCAGGg Zc3hc1; Nipa mmu-miR-370 193 223 uugGUCCAAG----GUGGG---GUCGUCCG-- |||| |: ||||| |||| ||| ctgCAGGGTTAGAACACCCATTCAGC-GGCTT Zc3hc1; Nipa mmu-miR-377 94 119 UGU---UUUCAACGGA--AACAC-ACUA ||| :||| |||| |||| |||| ACATGCGAAG--GCCTGCATGTGATGAT Zc3hc1; Nipa mmu-miR-378 167 191 UGU-GUCCUGGAC--CUCAGUCCUC ||| |||| || | ||||||:| ACAGCAGGCCCAGTTCCGTCAGGGG Zc3hc1; Nipa mmu-miR-380-5p 40 62 cgcguaCAA-GAUACCAGUUGgu ||| || ||||||:| gtctgaGTTCCTTTGGTCAGCtg Zc3hc1; Nipa mmu-miR-412 145 165 ugCCGAUCACCUGGUCCACUUCa || | |||||| :||| ||| tgGGGT-GTGGACAGGGT-AAGa Zc3hc1; Nipa mmu-miR-424 47 68 agguuuuguACUUAACGACGAC | |: |||||||| ttcctttggTCAGCTGCTGCTG Zc3hc1; Nipa mmu-miR-429 217 239 uGCCGUAA-UGGUCUGUCAUAAu |||| || ::: |:||||:|| gCGGCTTTGGTTCGGCAGTGTTc Zc3hc1; Nipa mmu-miR-450b 182 200 auaAGUCCUUGUAUGACGUuuu |||||:: |||||| ccgTCAGGGG---ACTGCAggg Zc3hc1; Nipa mmu-miR-455-3p 175 198 ucacauauaCGGGCACCUGACGUa |:| | |||||||| cccagttccGTCAGGGGACTGCAg Zc3hc1; Nipa mmu-miR-485-5p 44 64 CUUAAGUAGUGCCGGUCGGAGA ||:||| |: :||:||||: || GAGTTCCTT-TGGTCAGCTGCT Zc3hc1; Nipa mmu-miR-486 138 160 GAGCCCCG-UCGAGUCAUGUCCu ||| | |: :| | | ||||| CTCTGTGTGGGGTGTGGACAGGg Zc3hc1; Nipa mmu-miR-486 170 190 gagCCCCGUCGAGUCAUGUCCu || |||:|| || |||| gcaGGCCCAGTTCCGT-CAGGg Zc3hc1; Nipa mmu-miR-490 168 192 GUCGUACC---UC-AGGAGGUCCaac ||||| || || ||| :|||| CAGCA-GGCCCAGTTCCGTCAGGgga Zc3hc1; Nipa mmu-miR-497 48 71 auguuugguGUC-AC-ACGACGAC ||| || |||||||| tcctttggtCAGCTGCTGCTGCTG Zc3hc1; Nipa mmu-miR-500 42 65 GACUU--GGGAACGGGUCCACGua ||||: ||:||| :||| ||| CTGAGTTCCTTTGGTCAGCTGCtg Zc3hc1; Nipa mmu-miR-503 43 68 cgUCAUG---ACAAG--GGCGACGAu ||| | || || |:|||||| tgAGTTCCTTTGGTCAGCTGCTGCTg Zc3hc1; Nipa mmu-miR-615 121 143 UUCUCCCUCUGGGU--CCGAGCCu |||| ||||||||: |||| | AAGA-GGAGACCCGATAGCTCTGt Zc3hc1; Nipa mmu-miR-615 154 180 uUCUCCC--UCUG-G--GUCCGAGCCu | |||| |||| | ||||| | | gACAGGGTAAGACACAGCAGGCCCAGt Zc3hc1; Nipa mmu-miR-666 83 110 CCGAGAGUGUCG---AC----ACGGGCGa || |:|||| || || |||:|| GG-TTTCACTGCACATGCGAAGGCCTGCa Zc3hc1; Nipa mmu-miR-667 132 154 gaaccCGACCCACCGUCCACAgu ||| ||| :||||| cgataGCTCTGTGTGGGGTGTgg Zc3hc1; Nipa mmu-miR-669a 149 172 uguACUUGUAC--GUGUGUGUUGa ||:||| | | |||||:| gtgTGGACAGGGTAAGACACAGCa Zc3hc1; Nipa mmu-miR-674* 224 249 AACAAGACUCUAC---CCUCG-ACAc | |||| | :|| |||| ||| TGGTTCGGCAGTGTTCTGAGCATGTa Zc3hc1; Nipa mmu-miR-676* 231 253 CGUU-CAGGAUUCCAACAUCuca |||: ||:||:|| ||||| GCAGTGTTCTGAGCATGTAGctc Zc3hc1; Nipa mmu-miR-681 83 107 uCGACG-GACG-GU-CGC-UCCGac |:| | |||| || ||| |||| gGTTTCACTGCACATGCGAAGGCct Zc3hc1; Nipa mmu-miR-682 177 198 GUC--UGAAGUGACACUGACGUC ||| | ||| | |||||||| CAGTTCCGTCA-GGGGACTGCAG Zc3hc1; Nipa mmu-miR-683 151 174 CUCCUGUGUCG---AAUGUCGUCC | ||||| :|: |||||||| GTGGACAGGGTAAGACACAGCAGG Zc3hc1; Nipa mmu-miR-693-5p 133 157 CUUUUGA---A-AGCCUACACCgac || |:|| | | ||:||||| GATAGCTCTGTGTGGGGTGTGGaca Zc3hc1; Nipa mmu-miR-695 160 182 aAGUCAGUG--GAUACGGGUUAga | || ||| | | |||||:| gTAAGACACAGC-AGGCCCAGTtc Zc3hc1; Nipa mmu-miR-701 205 224 agGUAGAUAAAGUCGCCGAuu || | | |||||||||| aaCACCCA-TTCAGCGGCTtt Zc3hc1; Nipa mmu-miR-702 135 156 cUCGCCCCAUUUCCCAC-CCgu ||| ||: :||||| || tAGCTCTGTGTGGGGTGTGGac Zc3hc1; Nipa mmu-miR-713 41 64 cGACACACGGA----AGUC-ACGu ||| || ||| |||| ||| tCTGAGTTCCTTTGGTCAGCTGCt Zc3hc1; Nipa mmu-miR-717 122 148 UCUCUUC----C-AUAGAGACAGACUC ||||:|| | || |||||| ||:| AGAGGAGACCCGATAGCTCTGTGTGGG Zc3hc1; Nipa mmu-miR-761 53 72 ACACAGUCAAAGUGGGACGACg || ||||| | | : |||||| TG-GTCAGCTGC-TGCTGCTGt Zc3hc1; Nipa mmu-miR-762 159 183 CGAGACAGGGCCG---GGGUCGGGG | | | | | || |||||::|| GGTAAGACACAGCAGGCCCAGTTCC Zc3hc1; Nipa mmu-miR-763 38 63 cgguGAC-CAA-GAAG--GGUCGACc ||| ||| |||: :|||||| aagtCTGAGTTCCTTTGGTCAGCTGc Zc3hc1; Nipa mmu-miR-764-3p 86 110 ugucaACG-GU--GAUACCGGAGGa ||| || | | ||||| | ttcacTGCACATGCGAAGGCCTGCa Zc3hc1; Nipa mmu-miR-770-3p 159 180 ggucgagGUGCAGUCCGGGUgc ||| |||||||| ggtaagaCACAGCAGGCCCAgt Zc3hc1; Nipa mmu-miR-801 232 260 cagcuAAGG--CGUGCGU---GUCGUUAg |||: |||:|:| ||||||| cagtgTTCTGAGCATGTAGCTCAGCAATg

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Zc3hc1 RAID00348449 mmu-miR-324-3p miRNA MIMAT0000556 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID00389319 mmu-miR-30a-5p miRNA MIMAT0000128 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID00435644 mmu-miR-1190 miRNA MIMAT0005847 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID00453978 mmu-miR-339-5p miRNA MIMAT0000584 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID00639987 mmu-miR-195a-5p miRNA MIMAT0000225 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID01020612 mmu-miR-324-5p miRNA MIMAT0000555 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID01106701 mmu-miR-218-5p miRNA MIMAT0000663 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID01276023 mmu-miR-10a-5p miRNA MIMAT0000648 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID01347096 mmu-miR-497a-5p miRNA MIMAT0003453 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID01703959 mmu-miR-10b-5p miRNA MIMAT0000208 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID01780585 mmu-miR-185-5p miRNA MIMAT0000214 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID01951705 mmu-miR-15a-5p miRNA MIMAT0000526 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID02087593 mmu-miR-200b-3p miRNA MIMAT0000233 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID02106899 mmu-miR-882 miRNA MIMAT0004847 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID02278818 mmu-miR-15b-5p miRNA MIMAT0000124 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID02361393 mmu-miR-322-5p miRNA MIMAT0000548 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID02628788 mmu-miR-143-3p miRNA MIMAT0000247 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID02644794 mmu-miR-222-3p miRNA MIMAT0000670 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID02956626 mmu-miR-351-5p miRNA MIMAT0000609 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03190468 mmu-miR-200c-3p miRNA MIMAT0000657 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03332798 mmu-miR-370-3p miRNA MIMAT0001095 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03342220 mmu-miR-141-3p miRNA MIMAT0000153 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03446329 mmu-miR-125a-5p miRNA MIMAT0000135 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03485361 mmu-miR-16-5p miRNA MIMAT0000527 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03593649 mmu-miR-23b-3p miRNA MIMAT0000125 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03689103 mmu-miR-429-3p miRNA MIMAT0001537 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03712534 mmu-miR-1968-5p miRNA MIMAT0009441 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03845951 mmu-miR-539-5p miRNA MIMAT0003169 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03874466 mmu-miR-30d-5p miRNA MIMAT0000515 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03923784 mmu-miR-23a-3p miRNA MIMAT0000532 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID03966700 mmu-miR-200a-3p miRNA MIMAT0000519 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID04054991 mmu-miR-221-3p miRNA MIMAT0000669 Zc3hc1 mRNA 232679 Prediction 0.1828 Zc3hc1 RAID04472621 Ttc39aos1 lncRNA 102635290 Zc3hc1 protein 232679 Western Blot//RT-PCR 0.8808