DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004531 mmu-miR-135a* 69912 Nup43 gcggugccgaGGUUAGGGAUAu ||| ||||||| aaauauauucCCAUUCCCUAUu 2 13 440 461 [mm9:10:7395454-7395475:+] 0.5000 152 7 -16.11 -0.7572 MIMAT0004539 mmu-miR-183* 69912 Nup43 aauaccGGGAAGCCAUUA-AGUg |: ||:| |||| ||| aauaaaCUGUUUGUUAAUGUCA- 2 17 60 81 [mm9:10:7398655-7398676:+] 0.5753 120 0 -7.01 -1.0784 MIMAT0004539 mmu-miR-183* 69912 Nup43 aauaccgggaagccaUUAAGUg |||||| auuuccuaauuuaugAAUUCAu 2 8 265 286 [mm9:10:7395279-7395300:+] 0.5015 120 6 -8.12 -0.1666 MIMAT0000367 mmu-miR-291a-5p 69912 Nup43 ucucuCCCGGAGGU--GAAACUAc | ||| ||| ||||||| ggcauGAGCCACCACUCUUUGAUa 2 18 416 439 [mm9:10:7395430-7395453:+] 0.5000 156 7 -15.30 -0.9650 MIMAT0000367 mmu-miR-291a-5p 69912 Nup43 ucucucccggaggugAAACUAc |||||| caacugaucuuuuugUUUGAUa 2 8 522 543 [mm9:10:7395536-7395557:+] 0.5000 120 6 -6.66 -0.1098 MIMAT0004573 mmu-miR-293* 69912 Nup43 guuUUACAGUGUGUC-AAACUCa ||| |::::||| |||||| auuAAUUUUGUGCAGUUUUGAGa 2 20 285 307 [mm9:10:7395299-7395321:+] 0.5000 135 6 -13.87 -0.7302 MIMAT0004574 mmu-miR-294* 69912 Nup43 ucuaucccggaGGUAAAACUCa | :||||||| uuaauuuugugCAGUUUUGAGa 2 12 286 307 [mm9:10:7395300-7395321:+] 0.5000 143 7 -8.97 -0.6855 MIMAT0004620 mmu-let-7a* 69912 Nup43 ccuuucugucaucuaACAUAUc |||||| gguuacugacuguucUGUAUAa 2 8 229 250 [mm9:10:7395243-7395264:+] 0.5030 120 6 -8.82 -0.1281 MIMAT0004621 mmu-let-7b* 69912 Nup43 cccuuccgucauccaACAUAUc |||||| gguuacugacuguucUGUAUAa 2 8 229 250 [mm9:10:7395243-7395264:+] 0.5030 120 6 -4.39 -0.1306 MIMAT0005439 mmu-let-7c-2* 69912 Nup43 ccuuucugucaucuaACAUAUc |||||| gguuacugacuguucUGUAUAa 2 8 229 250 [mm9:10:7395243-7395264:+] 0.5030 120 6 -8.82 -0.1281 MIMAT0004623 mmu-let-7f* 69912 Nup43 cccuuccguuaucuaACAUAUc |||||| gguuacugacuguucUGUAUAa 2 8 229 250 [mm9:10:7395243-7395264:+] 0.5030 120 6 -3.14 -0.1332 MIMAT0004624 mmu-miR-15a* 69912 Nup43 acuccGUCGUGUCAUACCGGAc | | :| | ||||||| ucuuaCUGAGCUG-AUGGCCUu 2 18 133 153 [mm9:10:7395147-7395167:+] 0.5079 143 7 -13.55 -0.2192 MIMAT0000549 mmu-miR-322* 69912 Nup43 cacaacgucgcGAAGUACAAa ||||||||| aaaccgucauaCUUCAUGUUg 2 11 205 225 [mm9:10:7395219-7395239:+] 0.5030 150 7 -11.78 -0.4753 MIMAT0004640 mmu-miR-325 69912 Nup43 aacuauccuccacgaGUUAUUu |||||| gcauuuguaaggaaaCAAUAAa 2 8 44 65 [mm9:10:7398639-7398660:+] 0.5743 120 6 -8.46 -0.1135 MIMAT0000578 mmu-miR-337-3p 69912 Nup43 uccGUAGUAUAUCCUCGACUu | || || ||||||| gcuCCUCUUA-CUGAGCUGAu 2 19 128 147 [mm9:10:7395142-7395161:+] 0.5079 144 7 -10.33 -0.4579 MIMAT0000650 mmu-miR-17* 69912 Nup43 gauguucACGGGAG-UGACGUCa | :|: | ||||||| uucaucaUAUCUACAACUGCAGu 2 16 91 113 [mm9:10:7395105-7395127:+] 0.5199 142 7 -17.00 -0.7573 MIMAT0004660 mmu-miR-19a* 69912 Nup43 caucacguugauacGUUUUGAu ||||||| guuuucuuuuuucuCAAAACUa 2 9 170 191 [mm9:10:7395184-7395205:+] 0.5021 140 7 -9.37 -1.0405 MIMAT0004670 mmu-miR-7a* 69912 Nup43 auaccGUCUGACACUAAACAAc :| ||| :|||||| aacaaUAAACU---GUUUGUUa 2 18 57 75 [mm9:10:7398652-7398670:+] 0.5743 125 6 -6.59 -0.1979 MIMAT0000745 mmu-miR-380-3p 69912 Nup43 uucuacaccugguAUGAUGUAu |||||||| cugcagucaguauUACUACAUg 2 10 107 128 [mm9:10:7395121-7395142:+] 0.5199 145 7 -10.72 -0.4423 MIMAT0001637 mmu-miR-452 69912 Nup43 cagagucaaaggagaCGUUUGu |||||| uagaaauacaagaaaGCAAACa 2 8 605 626 [mm9:10:7395619-7395640:+] 0.5022 120 6 -8.62 -0.1057 MIMAT0002108 mmu-miR-467a-1* 69912 Nup43 cacauccacacacauACAUAUa |||||| gguuacugacuguucUGUAUAa 2 8 229 250 [mm9:10:7395243-7395264:+] 0.5030 120 6 -7.06 -0.1319 MIMAT0002110 mmu-miR-469 69912 Nup43 ccUGUGGUUCUAGUUACUUUCUC-CGu | |:||| : | |||||| || gaAAAUCAAAGGCUUCAAAAGAGAGCc 2 25 830 856 [mm9:10:7395844-7395870:+] 0.5000 120 0 -13.41 -0.1228 MIMAT0003166 mmu-miR-546 69912 Nup43 cugagGCACGGUGGUa :| ||||||| aggcaUGAGCCACCAc 2 12 415 430 [mm9:10:7395429-7395444:+] 0.5000 143 7 -16.25 -0.5206 MIMAT0004788 mmu-miR-20b* 69912 Nup43 gaucuucacgaGUG-UGACGUCa :|| ||||||| uucaucauaucUACAACUGCAGu 2 12 91 113 [mm9:10:7395105-7395127:+] 0.5199 142 7 -15.03 -0.7573 MIMAT0003189 mmu-miR-291b-5p 69912 Nup43 ccucuCCCGGAGGU--GAAACUAg | ||| ||| ||||||| ggcauGAGCCACCACUCUUUGAUa 2 18 416 439 [mm9:10:7395430-7395453:+] 0.5000 156 7 -17.10 -0.9650 MIMAT0003189 mmu-miR-291b-5p 69912 Nup43 ccucucccggaggugAAACUAg |||||| caacugaucuuuuugUUUGAUa 2 8 522 543 [mm9:10:7395536-7395557:+] 0.5000 120 6 -9.31 -0.1098 MIMAT0004188 mmu-miR-802 69912 Nup43 uuccuacuuagaaaCAAUGACu ||||||| cuucauguugucagGUUACUGa 2 9 216 237 [mm9:10:7395230-7395251:+] 0.5030 140 7 -13.97 -0.6458 MIMAT0003451 mmu-miR-677 69912 Nup43 agucuucgaUUAGUAGUGACUu |||:|||||| | ucuguauaaAAUUAUCACUUAa 2 14 242 263 [mm9:10:7395256-7395277:+] 0.5030 129 0 -10.88 -0.1278 MIMAT0003455 mmu-miR-679 69912 Nup43 ugGUUCUCAGUGGA----GUGUCAGg | ||| |:: || ||||||| aaCUAGACUUGACUAUACCACAGUCc 2 21 357 382 [mm9:10:7395371-7395396:+] 0.5000 147 7 -18.44 -0.2507 MIMAT0003471 mmu-miR-692 69912 Nup43 cucacUCCGCGAG-UUUCUCUa |||| :|| ||||||| aucaaAGGC-UUCAAAAGAGAg 2 17 834 854 [mm9:10:7395848-7395868:+] 0.5000 153 7 -15.96 -0.3267 MIMAT0004189 mmu-miR-693-3p 69912 Nup43 aaUGUCGGUGUAGACUUUCGACg ||| : | | | ||||||| ucACACUAAAAGAUAAAAGCUGa 2 22 754 776 [mm9:10:7395768-7395790:+] 0.5000 153 7 -12.22 -1.1462 MIMAT0004826 mmu-miR-146b* 69912 Nup43 uggUCUUGACUCAGGGAUCCCg | :||| |:||||||| agaAAGACU-CUUUCCUAGGGg 2 20 553 573 [mm9:10:7395567-7395587:+] 0.5000 149 7 -18.74 -0.3266 MIMAT0005448 mmu-miR-467b 69912 Nup43 guAUAUGUACGUCCGUGAAUg |||| | :| |||||| ugUAUAAAAUUA-UCACUUAa 2 20 244 263 [mm9:10:7395258-7395277:+] 0.5030 121 6 -7.54 -0.3214 MIMAT0003478 mmu-miR-467b* 69912 Nup43 caCAACCACACAC-AUACAUAUa ||| || || | |||||| agGUUACUGACUGUUCUGUAUAa 2 21 228 250 [mm9:10:7395242-7395264:+] 0.5030 127 6 -8.26 -0.1319 MIMAT0003496 mmu-miR-706 69912 Nup43 aaaaaacucugucccAAAGAGa |||||| uuuuguguuuucuuuUUUCUCa 2 8 164 185 [mm9:10:7395178-7395199:+] 0.4990 120 6 -7.35 -0.1059 MIMAT0003498 mmu-miR-708* 69912 Nup43 gaucuucgagugucaGAUCAAc |||||| ---aagugaaaaaacCUAGUUa 2 8 1 19 [mm9:10:7398596-7398614:+] 0.5563 120 6 -6.17 -0.2057 MIMAT0003500 mmu-miR-710 69912 Nup43 gaguugagagggGUUCUGAACc | ||||||| cuguauaccaaaCUAGACUUGa 2 11 347 368 [mm9:10:7395361-7395382:+] 0.5000 142 7 -12.62 -0.8798 MIMAT0003510 mmu-miR-717 69912 Nup43 ucucUUCCAUA-GAGACA--GACUc |:|||:| |||||| |||| cuuaAGGGUGUACUCUGUCCCUGAg 2 19 482 506 [mm9:10:7395496-7395520:+] 0.5000 121 0 -25.55 -0.3196 MIMAT0004838 mmu-miR-742* 69912 Nup43 acUAA-UCGUUGGUACAC-UCAu ||| | :||:: |||| ||| gaAUUCAUUAAUUUUGUGCAGUu 2 20 279 301 [mm9:10:7395293-7395315:+] 0.5000 122 0 -8.23 -0.9526 MIMAT0004237 mmu-miR-742 69912 Nup43 aaaUGGGUCGUACCACCGAAAg |||| : | ||||||| gacACCC--UCUUCUGGCUUUu 2 20 578 597 [mm9:10:7395592-7395611:+] 0.5011 144 7 -14.79 -0.3160 MIMAT0004849 mmu-miR-883a-3p 69912 Nup43 uaugacucUCGACAACGUCAAu | :| ||||||| auucauuaAUUUUGUGCAGUUu 2 15 281 302 [mm9:10:7395295-7395316:+] 0.5000 142 7 -10.66 -0.7285 MIMAT0004851 mmu-miR-883b-3p 69912 Nup43 uaUGACUCUCUACA--ACGUCAAu |:| | || | ||||||| gaAUUCAUUAAUUUUGUGCAGUUu 2 21 279 302 [mm9:10:7395293-7395316:+] 0.5000 143 7 -8.93 -0.7285 MIMAT0004887 mmu-miR-467d* 69912 Nup43 cacauccacacacauACAUAUa |||||| gguuacugacuguucUGUAUAa 2 8 229 250 [mm9:10:7395243-7395264:+] 0.5030 120 6 -7.06 -0.1319 MIMAT0005291 mmu-miR-582-5p 69912 Nup43 ucauugaccaacuugUUGACAu |||||| uguaaggaaacaauaAACUGUu 2 8 49 70 [mm9:10:7398644-7398665:+] 0.5743 120 6 -8.40 -0.1136 MIMAT0005293 mmu-miR-467e 69912 Nup43 uguAUAUGUACGAGU-GUGAAUa |:||:| |:| |||||| uucUGUAUAAAAUUAUCACUUAa 2 20 241 263 [mm9:10:7395255-7395277:+] 0.5030 123 6 -9.67 -1.2798 MIMAT0005294 mmu-miR-467e* 69912 Nup43 uauauccacacacauACAUAUa |||||| gguuacugacuguucUGUAUAa 2 8 229 250 [mm9:10:7395243-7395264:+] 0.5030 120 6 -6.34 -0.1319 MIMAT0005830 mmu-miR-466l 69912 Nup43 uuauacacacguacaUAAAUAu |||||| acuuaauauuuccuaAUUUAUg 2 8 258 279 [mm9:10:7395272-7395293:+] 0.5015 120 6 -3.56 -0.1218 MIMAT0005832 mmu-miR-669g 69912 Nup43 uaGUACAGUUGUGU--AUGUU-ACGu |:| ||| ||:| ||||| ||| uuCGU-UCAUCAUAUCUACAACUGCa 2 22 87 111 [mm9:10:7395101-7395125:+] 0.5199 126 0 -15.56 -0.9451 MIMAT0005836 mmu-miR-1186 69912 Nup43 guacggAAAUUAAGGUCGU-GAg | |:|| |||||| || gaaaggUGUGAUCCCAGCAGCUa 2 17 673 695 [mm9:10:7395687-7395709:+] 0.5000 124 0 -12.96 -0.1250 MIMAT0005846 mmu-miR-467f 69912 Nup43 acauccacacacacACAUAUa |||||| guuacugacuguucUGUAUAa 2 8 230 250 [mm9:10:7395244-7395264:+] 0.5030 120 6 -4.83 -0.1319 MIMAT0005855 mmu-miR-467h 69912 Nup43 ugUAUAUGUACGUGUGUGAAUa :|||| | :| |||||| cuGUAUAAAAUUA-UCACUUAa 2 21 243 263 [mm9:10:7395257-7395277:+] 0.5030 122 6 -8.33 -0.3214 MIMAT0007864 mmu-miR-1897-5p 69912 Nup43 gggggAGAAAGAGGUA-GGUUUc |:|| || :|| ||||| cuggaUUUUACUGUAUACCAAAc 2 18 337 359 [mm9:10:7395351-7395373:+] 0.5000 125 0 -9.36 -0.7234 MIMAT0009399 mmu-miR-1935 69912 Nup43 ucucUAGGCGGUC-GGA-GACGGa || | ||| ||| ||||| gacuAUACCACAGUCCUCCUGCCu 2 19 367 390 [mm9:10:7395381-7395404:+] 0.5000 121 0 -21.38 -0.2543 MIMAT0009419 mmu-miR-669m 69912 Nup43 uauacaaacacaccuACAUAUa |||||| gguuacugacuguucUGUAUAa 2 8 229 250 [mm9:10:7395243-7395264:+] 0.5030 120 6 -4.88 -0.1332 MIMAT0009431 mmu-miR-1958 69912 Nup43 ugaaugacgaagGUGAAAGGAu | ||||||| uuuuuagaaagaCUCUUUCCUa 2 11 548 569 [mm9:10:7395562-7395583:+] 0.5000 142 7 -11.85 -0.6019 MIMAT0009431 mmu-miR-1958 69912 Nup43 ugAAUGACGAAGGUGAAAGGAu |||: ||| |||||| aaUUAUCACUUAAUAUUUCCUa 2 21 251 272 [mm9:10:7395265-7395286:+] 0.5030 124 6 -12.01 -0.3646 MIMAT0009441 mmu-miR-1968 69912 Nup43 ucaGGUGGUAGGAAUUGUCGACGu ||| | | : | |||||||| aggCCAACCUGUGUCACAGCUGCu 2 22 726 749 [mm9:10:7395740-7395763:+] 0.5000 161 7 -22.19 -0.2631 MIMAT0011216 mmu-miR-2140 69912 Nup43 ugguggUUCUAGAC-GUGGa ::|||||| |||| uccuagGGGAUCUGACACCc 2 14 565 584 [mm9:10:7395579-7395598:+] 0.5000 121 0 -19.14 -0.3274 MIMAT0012774 mmu-miR-664 69912 Nup43 auccgaccccucauuUACUUAu |||||| aauauuuccuaauuuAUGAAUu 2 8 262 283 [mm9:10:7395276-7395297:+] 0.5015 120 6 -3.81 -0.1177 MIMAT0015642 mmu-miR-3471 69912 Nup43 uuaCGGAAUGUCAACCUAGAGu |::||: : | ||||||| gcaGUUUUGAGAUAGGAUCUCa 2 20 296 317 [mm9:10:7395310-7395331:+] 0.5000 155 7 -18.34 -0.9707 MIMAT0000128 mmu-miR-30a 69912 Nup43 gaaggucagcuccuACAAAUGu ||||||| auaaucucuuccucUGUUUACg 2 9 55 76 [mm9:10:7395069-7395090:+] 0.5164 140 7 -13.20 -0.2059 MIMAT0000130 mmu-miR-30b 69912 Nup43 ucgacucacauccuACAAAUGu ||||||| auaaucucuuccucUGUUUACg 2 9 55 76 [mm9:10:7395069-7395090:+] 0.5164 140 7 -7.49 -0.2059 MIMAT0000144 mmu-miR-132 69912 Nup43 gcUGGUACCGACAUCUGACAAu ::|| ||:| ||||||| uuGUCA-GGUUACUGACUGUUc 2 21 223 243 [mm9:10:7395237-7395257:+] 0.5030 150 7 -15.89 -0.6738 MIMAT0000145 mmu-miR-133a 69912 Nup43 gucgaccaacuuccCCUGGUUu ||||||| aaacuagaaccuauGGACCAAa 2 9 186 207 [mm9:10:7395200-7395221:+] 0.5025 140 7 -12.41 -0.9723 MIMAT0000150 mmu-miR-138 69912 Nup43 gccggacUAAGUGUUGUGGUCga |||: :| |||||| uaucaaaAUUU-UAUCACCAGaa 3 17 18 39 [mm9:10:7398613-7398634:+] 0.5191 130 0 -10.96 -0.1000 MIMAT0000159 mmu-miR-149 69912 Nup43 cccUCACUUCUGUGCCUCGGUCu | ||::|| |: ||||||| auuACUGGGGA-AU-GAGCCAGg 2 21 459 479 [mm9:10:7395473-7395493:+] 0.5000 152 7 -21.53 -0.2786 MIMAT0000224 mmu-miR-194 69912 Nup43 aggUGUACCU-CAACGACA-AUGu :| |||| || |||| ||| uaaGCCUGGAUUUUACUGUAUACc 2 20 332 355 [mm9:10:7395346-7395369:+] 0.5000 122 0 -9.95 -0.5504 MIMAT0000233 mmu-miR-200b 69912 Nup43 agUAG-UAAUG--GUCCGUCAUAAu ||| | || ||| ||||||| auAUCUACAACUGCAGUCAGUAUUa 2 21 97 121 [mm9:10:7395111-7395135:+] 0.5199 154 7 -15.11 -0.8853 MIMAT0000236 mmu-miR-203 69912 Nup43 gaucaccaggaUUUGUAAAGUg :| ||||||| ---uucauaggGACCAUUUCAc 2 12 1 19 [mm9:10:7395015-7395033:+] 0.5049 143 7 -12.16 -0.2413 MIMAT0000248 mmu-miR-30e 69912 Nup43 gaaggucaguuccuACAAAUGu ||||||| auaaucucuuccucUGUUUACg 2 9 55 76 [mm9:10:7395069-7395090:+] 0.5164 140 7 -13.20 -0.2059 MIMAT0000514 mmu-miR-30c 69912 Nup43 cgacucucacauccuACAAAUGu ||||||| gauaaucucuuccucUGUUUACg 2 9 54 76 [mm9:10:7395068-7395090:+] 0.5164 140 7 -7.49 -0.2059 MIMAT0000515 mmu-miR-30d 69912 Nup43 gaaggucagccccuACAAAUGu ||||||| auaaucucuuccucUGUUUACg 2 9 55 76 [mm9:10:7395069-7395090:+] 0.5164 140 7 -13.20 -0.2059 MIMAT0000657 mmu-miR-200c 69912 Nup43 agGUAGUA---AUG--GGC--C-GUCAUAAu |||||| ||| |:| | ||||||| uuCAUCAUAUCUACAACUGCAGUCAGUAUUa 2 22 91 121 [mm9:10:7395105-7395135:+] 0.5199 149 7 -18.63 -0.8853 MIMAT0000659 mmu-miR-212 69912 Nup43 acCGGCA--CUGACCUCUGACAAu |::|| |::| ||||||| auGUUGUCAGGUUACUGACUGUUc 2 21 220 243 [mm9:10:7395234-7395257:+] 0.5030 147 7 -13.95 -0.6626 MIMAT0000662 mmu-miR-216a 69912 Nup43 aguGUC-AACGGU---CGACUCUAAu :|| || |:| ||||||||| ccuUAGCUUCCUAUGUGCUGAGAUUa 2 20 388 413 [mm9:10:7395402-7395427:+] 0.5000 153 7 -17.55 -0.2058 MIMAT0000665 mmu-miR-223 69912 Nup43 accccAUAAACUGUUUGA-CUGu |:| | |||||| ||| uuuacUGUAUACCAAACUAGACu 2 18 343 365 [mm9:10:7395357-7395379:+] 0.5000 121 0 -10.48 -0.5831 MIMAT0000667 mmu-miR-33 69912 Nup43 acGUUACGUUGAUGUU-ACGUg || :| |||||| |||| uuCAUCAUAUCUACAACUGCAg 2 20 91 112 [mm9:10:7395105-7395126:+] 0.5199 123 0 -11.72 -0.6018 MIMAT0000741 mmu-miR-377 69912 Nup43 uguuuUCAACGGAAACAC-ACUa || | ||| |||| ||| gccuuAGCUUCCUAUGUGCUGAg 2 18 387 409 [mm9:10:7395401-7395423:+] 0.5000 125 0 -10.95 -0.4731 MIMAT0003151 mmu-miR-378 69912 Nup43 ggaAGACUGAGGU-UCAGGUCa ||| |||::: ||||||| ggaUCUCACUUUGUAGUCCAGg 2 19 310 331 [mm9:10:7395324-7395345:+] 0.5000 161 7 -18.01 -0.2476 MIMAT0000769 mmu-miR-133b 69912 Nup43 aucgaccaacuuccCCUGGUUu ||||||| aaacuagaaccuauGGACCAAa 2 9 186 207 [mm9:10:7395200-7395221:+] 0.5025 140 7 -12.41 -0.9723 MIMAT0004745 mmu-miR-384-5p 69912 Nup43 uguaacggauccuuaACAAAUGu ||||||| gauaaucucuuccucUGUUUACg 2 9 54 76 [mm9:10:7395068-7395090:+] 0.5164 140 7 -9.78 -0.2059 MIMAT0001537 mmu-miR-429 69912 Nup43 ugccguaaugGUCUGUCAUAAu ||| ||||||| ucuacaacugCAGUCAGUAUUa 2 13 100 121 [mm9:10:7395114-7395135:+] 0.5199 152 7 -14.03 -0.8853 MIMAT0003169 mmu-miR-539 69912 Nup43 ugugugguuccuauuAAAGAGg |||||| uuuuguguuuucuuuUUUCUCa 2 8 164 185 [mm9:10:7395178-7395199:+] 0.4990 120 6 -5.25 -0.1113 MIMAT0003727 mmu-miR-374 69912 Nup43 gugaauCGUCCAACAUAAU-AUa |||| |||||| || acaacuGCAGUCAGUAUUACUAc 2 17 103 125 [mm9:10:7395117-7395139:+] 0.5199 120 0 -9.86 -0.4939 MIMAT0003456 mmu-miR-495 69912 Nup43 uucuucacgugguACAAACAAa |||||||| ggaaacaauaaacUGUUUGUUa 2 10 54 75 [mm9:10:7398649-7398670:+] 0.5743 145 7 -7.93 -1.2424 MIMAT0004896 mmu-miR-590-3p 69912 Nup43 ugaucgAAUAUGUAUUUUAAu || |::|||||||| ugacugUUCUGUAUAAAAUUa 2 16 235 255 [mm9:10:7395249-7395269:+] 0.5030 159 7 -11.31 -1.1514 MIMAT0005850 mmu-miR-1192 69912 Nup43 uuaaaccagacaaACAAACAAa |||||||| ggaaacaauaaacUGUUUGUUa 2 10 54 75 [mm9:10:7398649-7398670:+] 0.5743 145 7 -10.93 -1.2461

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G067438 Nup43 Mus musculus 69912

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Nup43 mmu-miR-1970 beg:20 end:48 pic:3' GTTTCGGATAG-GGG---TCACTGTGT 5'& ||| ..|||| || ||||.||. &5' -AAATTTTATCACCAGAAAGTGGCAT- 3' Nup43 mmu-miR-290-3p beg:38 end:50 pic:3' CCCGAATTTTGATCCGCCGTGAAA 5'& |.||||.|| &5' --------------GTGGCATTT- 3' Nup43 mmu-miR-292-3p beg:29 end:50 pic:3' TGTGAGTTTTGGACCGCCGTGAAA 5'& ||| ||.|| |.||||.|| &5' -CAC-CAGAAA---GTGGCATTT- 3' Nup43 mmu-miR-293 beg:29 end:49 pic:3' TGTGATGTTTGAGACGCCGTGA 5'& ||| ||.| |.||||.| &5' -CAC--CAGAAA--GTGGCATT 3' Nup43 mmu-miR-294 beg:30 end:50 pic:3' TGTGTGTTTTCCCTTCGTGAAA 5'& ||| ||.|| .|||.|| &5' -CAC-CAGAAAGT-GGCATTT- 3' Nup43 mmu-miR-295 beg:32 end:50 pic:3' TCTGAGTTTTCATCATCGTGAAA 5'& ||.|| |||.|||.|| &5' -----CAGAA--AGTGGCATTT- 3' Nup43 mmu-miR-302a beg:28 end:51 pic:3' AGTGGTTTTGTACCTTCGTGAAT 5'& ||||||.|| .|||.||. &5' TCACCAGAAAGT---GGCATTTG 3' Nup43 mmu-miR-713 beg:64 end:86 pic:3' CGACACACGGA---AGTCACGT 5'& |||| ||.. ||||||| &5' -CTGTTTGTTAATGTCAGTGC- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Nup43 mmu-miR-292-3p 31 51 UGUGAGUUUUGGACCGCCGUGAA- ||| ||:|| |:||||:|| UCAC-CAGAAA---GUGGCAUUUG Nup43 mmu-miR-293 31 50 UGUGAUGUUUGAGACGCCGUGA- ||| ||:| |:||||:| UCAC--CAGAAA--GUGGCAUUU Nup43 mmu-miR-302 30 52 -AGUGGUUUUGUACCUUCGUGAAU- ||||||:|| :|||:||: AUCACCAGAAAGU---GGCAUUUGU Nup43 mmu-miR-469 31 48 CCUGUGGUUCUAGUUACUUUCUCCGU- ||||| ||||| |||| --UCACCA--------GAAAGUGGCAU Nup43 mmu-miR-495 35 76 UUCUU-CA-CGUG-----------GU------ACAAACAAA |||| || |||: || |||||||| CAGAAAGUGGCAUUUGUAAGGAAACAAUAAACUGUUUGUUA Nup43 mmu-miR-742 26 47 -AAAUG--GGUCGUACCACCGAAAG ||||: |||| ||||| UUUUAUCACCAGAAA-GUGGCA--- Nup43 mmu-miR-495 68 75 U--UCUU-CAC-GUGGU-----------------ACAAACAAA |||| ||| ||:: |||||||| ACCAGAAAGUGGCAUUUGUAAGGAAACAAUAAACUGUUUGUUA Nup43 mmu-miR-302 31 50 AGUGGUUUUGUACCUUCGUGAAu ||||||:|| | | :|||:|| TCACCAGAA-A--GTGGCATTTg Nup43 mmu-miR-469 15 46 cCUGUGGUUCU-AGUUA-----CUUUCUCCGU | :|:||| | |: || ||||| |||| aGTTATCAAAATTTTATCACCAGAAAGTGGCA Nup43 mmu-miR-742 27 49 AAAU-G-GGUCGUACCACCGAAAg |||| | |||| | ||||| || TTTATCACCAG-AAAGTGGCATTt

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nup43 RAID00122359 mmu-miR-30a-5p miRNA MIMAT0000128 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID00139689 mmu-miR-30d-5p miRNA MIMAT0000515 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID00195268 mmu-miR-33-5p miRNA MIMAT0000667 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID00289758 mmu-miR-200c-3p miRNA MIMAT0000657 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID00926678 mmu-miR-1192 miRNA MIMAT0005850 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID00934418 mmu-miR-30e-5p miRNA MIMAT0000248 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID01102682 mmu-miR-216a-5p miRNA MIMAT0000662 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID01280445 mmu-miR-378a-3p miRNA MIMAT0003151 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID01436226 mmu-miR-429-3p miRNA MIMAT0001537 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID01726095 mmu-miR-495-3p miRNA MIMAT0003456 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID01834652 mmu-miR-203-3p miRNA MIMAT0000236 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID02008060 mmu-miR-133a-3p miRNA MIMAT0000145 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID02212796 mmu-miR-223-3p miRNA MIMAT0000665 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID02466884 mmu-miR-30c-5p miRNA MIMAT0000514 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID02469719 mmu-miR-374b-5p miRNA MIMAT0003727 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID02597160 mmu-miR-133b-3p miRNA MIMAT0000769 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID02625255 mmu-miR-200b-3p miRNA MIMAT0000233 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID02799472 mmu-miR-539-5p miRNA MIMAT0003169 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID02973378 mmu-miR-590-3p miRNA MIMAT0004896 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID03052148 mmu-miR-212-3p miRNA MIMAT0000659 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID03212588 mmu-miR-194-5p miRNA MIMAT0000224 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID03267519 mmu-miR-30b-5p miRNA MIMAT0000130 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID03391952 mmu-miR-138-5p miRNA MIMAT0000150 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID03753545 mmu-miR-377-3p miRNA MIMAT0000741 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID03844668 mmu-miR-132-3p miRNA MIMAT0000144 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID03876807 mmu-miR-384-5p miRNA MIMAT0004745 Nup43 mRNA 69912 Prediction 0.1828 Nup43 RAID03992817 mmu-miR-149-5p miRNA MIMAT0000159 Nup43 mRNA 69912 Prediction 0.1828