DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 78309 Cul9 cgaCGUUUGUAGGC---UGACUUuc || | | ||:| |||||| gaaGC-ACCUUCUGUUUACUGAAua 3 20 54 77 [mm9:17:46637580-46637603:-] 0.4985 124 0 -11.51 -0.1270 MIMAT0000129 mmu-miR-30a* 78309 Cul9 cgaCGUUUGUAGGC---UGACUUuc || | | ||:| |||||| gaaGC-ACCUUCUGUUUACUGAAua 3 20 54 77 [mm9:17:46637580-46637603:-] 0.4985 124 0 -11.51 -0.1128 MIMAT0000143 mmu-miR-9* 78309 Cul9 ugaaagccaauagaUCGAAAUa ||||||| cgaaagguaaggagAGCUUUAa 2 9 79 100 [mm9:17:46666762-46666783:-] 0.5028 140 7 -9.55 -0.5033 MIMAT0004541 mmu-miR-188-3p 78309 Cul9 acGUUUGGGAC-GUACACCCUc ::::| || | ||||||| guUGGGCAGUGUCUUGUGGGAg 2 20 79 100 [mm9:17:46656561-46656582:-] 0.4866 146 7 -22.38 -0.1437 MIMAT0004546 mmu-miR-202-5p 78309 Cul9 uuUCUUCAUAUACGUAUCCUu ||:|||:|: ||||||| gcAGGAGUGUGCACAUAGGAc 2 20 44 64 [mm9:17:46656597-46656617:-] 0.5510 167 7 -20.40 -0.1747 MIMAT0000249 mmu-miR-30e* 78309 Cul9 cgACAUUUGU---AGGC---UGACUUuc || ||:|| ||:| |||||| ucUG-AAGCACCUUCUGUUUACUGAAua 3 21 51 77 [mm9:17:46637580-46637606:-] 0.4985 124 0 -15.55 -0.1270 MIMAT0000249 mmu-miR-30e* 78309 Cul9 cgACAUUUGU---AGGC---UGACUUuc || ||:|| ||:| |||||| ucUG-AAGCACCUUCUGUUUACUGAAua 3 21 51 77 [mm9:17:46637580-46637606:-] 0.4985 124 0 -15.55 -0.1128 MIMAT0004664 mmu-miR-214* 78309 Cul9 cgugucguuCACAUCUGUCCGu | || ||||||| --------uGAGU-GACAGGCa 2 14 1 13 [mm9:17:46666849-46666861:-] 0.4939 143 7 -16.91 -0.3927 MIMAT0002109 mmu-miR-468 78309 Cul9 gucUGUGUG-CGUGUA-GUCAGUAu :| ||| |:: | ||||||| ucuGCCCACUUCGUUUCCAGUCAUg 2 21 194 218 [mm9:17:46656443-46656467:-] 0.5563 146 7 -17.11 -0.3751 MIMAT0004781 mmu-miR-532-3p 78309 Cul9 acGUUCGGAAC-CCACACCCUCc :::|| || |||||||| guUGGGCAGUGUCUUGUGGGAGg 2 21 79 101 [mm9:17:46656560-46656582:-] 0.4866 147 7 -26.89 -0.2445 MIMAT0003166 mmu-miR-546 78309 Cul9 cugaggcaCGGUGGUa ||||||| aaggagagGCCACCAg 2 9 28 43 [mm9:17:46656618-46656633:-] 0.5510 140 7 -13.70 -0.1181 MIMAT0003732 mmu-miR-668 78309 Cul9 ccaucacccggcucgGCUCACUGu :||||||| ---------------UGAGUGACa 2 10 1 9 [mm9:17:46666853-46666861:-] 0.4939 141 7 -14.25 -0.2589 MIMAT0004822 mmu-miR-770-5p 78309 Cul9 gcaccggGUCUGUGCACC-ACGa :|| ||||||| ||| gugagaaUAGUCACGUGGAUGCu 2 16 112 134 [mm9:17:46656527-46656549:-] 0.5215 127 0 -26.16 -0.1525 MIMAT0004188 mmu-miR-802 78309 Cul9 uucCUACUUAGAA-AC-AAUGACu || | | ||| || |||||| ucuGAAGCACCUUCUGUUUACUGa 2 20 51 74 [mm9:17:46637583-46637606:-] 0.4985 126 6 -11.90 -0.8410 MIMAT0004188 mmu-miR-802 78309 Cul9 uucCUACUUAGAA-AC-AAUGACu || | | ||| || |||||| ucuGAAGCACCUUCUGUUUACUGa 2 20 51 74 [mm9:17:46637583-46637606:-] 0.4985 126 6 -11.90 -0.8021 MIMAT0003735 mmu-miR-672 78309 Cul9 aguGUGUGUCA-UGUG-GUUGG-AGu ||||::|| || | ||||| || aacCACAUGGUAACUCACAACCAUCu 2 21 187 212 [mm9:17:46666650-46666675:-] 0.5010 130 0 -19.69 -0.3059 MIMAT0003735 mmu-miR-672 78309 Cul9 agugugugucauguggUUGGAGu |||||| uucuguuuacugaauaAACCUCu 2 8 62 84 [mm9:17:46637573-46637595:-] 0.4985 120 6 -10.30 -0.2266 MIMAT0003735 mmu-miR-672 78309 Cul9 agugugugucauguggUUGGAGu |||||| uucuguuuacugaauaAACCUCu 2 8 62 84 [mm9:17:46637573-46637595:-] 0.4985 120 6 -10.30 -0.1045 MIMAT0003740 mmu-miR-674 78309 Cul9 auguggugaggguaGAGUCACg ||||||| ggcuggcgagauggCUCAGUGg 2 9 117 138 [mm9:17:46666724-46666745:-] 0.5028 140 7 -13.65 -0.1181 MIMAT0003487 mmu-miR-697 78309 Cul9 agaGGU-GUCCUGGUCCU-ACAa ||| |||| ||||| ||| aggCCACCAGG--CAGGAGUGUg 2 19 34 54 [mm9:17:46656607-46656627:-] 0.5510 122 0 -19.78 -0.2464 MIMAT0003495 mmu-miR-705 78309 Cul9 acGGGUGGGGUGGA-GGGUGg ::||| ::::|| ||||| ucUUCACAUUGUCUGCCCACu 2 19 183 203 [mm9:17:46656458-46656478:-] 0.5563 122 0 -21.36 -0.5714 MIMAT0003497 mmu-miR-707 78309 Cul9 gcAUCCGUUCGCCGU-ACUGAc |:| :||| ||| ||||| agUGGUUAAG-AGCACUGACUg 2 20 134 154 [mm9:17:46666708-46666728:-] 0.5021 121 0 -21.57 -0.1466 MIMAT0003502 mmu-miR-712 78309 Cul9 ccauggcgggcccACUUCCuc |||||| caaauaaaaauauUGAAGGcu 3 9 231 251 [mm9:17:46656410-46656430:-] 0.5563 120 0 -7.95 -0.3122 MIMAT0003510 mmu-miR-717 78309 Cul9 ucuCUUCCAUAGAGACA-GACUc ||||| || |||| |||| ccuGAAGGGCUC-CUGUACUGAu 2 20 31 52 [mm9:17:46666810-46666831:-] 0.5088 129 0 -18.34 -0.3223 MIMAT0003510 mmu-miR-717 78309 Cul9 ucUCUUCCAUAGAG---ACAGACUc |||:|| ||: | ||||||| ggAGAGGGGAUUCCCAGUGUCUGAa 2 21 32 56 [mm9:17:46637601-46637625:-] 0.4497 159 7 -22.10 -0.2558 MIMAT0003510 mmu-miR-717 78309 Cul9 ucUCUUCCAUAGAG---ACAGACUc |||:|| ||: | ||||||| ggAGAGGGGAUUCCCAGUGUCUGAa 2 21 32 56 [mm9:17:46637601-46637625:-] 0.4497 159 7 -22.10 -0.2566 MIMAT0004210 mmu-miR-804 78309 Cul9 agguccacuccUUGUUGAGUGu :::||||||| agcaaccacauGGUAACUCACa 2 12 184 205 [mm9:17:46666657-46666678:-] 0.5010 143 7 -17.72 -0.8218 MIMAT0004841 mmu-miR-871 78309 Cul9 guacugaccgugauuaGACUUAu |||||| aagcaccuucuguuuaCUGAAUa 2 8 55 77 [mm9:17:46637580-46637602:-] 0.4985 120 6 -10.35 -0.1592 MIMAT0004841 mmu-miR-871 78309 Cul9 guacugaccgugauuaGACUUAu |||||| aagcaccuucuguuuaCUGAAUa 2 8 55 77 [mm9:17:46637580-46637602:-] 0.4985 120 6 -10.35 -0.1410 MIMAT0004848 mmu-miR-883a-5p 78309 Cul9 cauuGACGAUGAAGAG-AGUCGu :|||| || :|| ||||| augcUUGCU-CUCUUCUUCAGCa 2 19 130 151 [mm9:17:46656510-46656531:-] 0.5389 124 0 -20.70 -0.6663 MIMAT0004930 mmu-miR-466d-5p 78309 Cul9 guacauguACAUGCGUGUGUGu | | : ||||||| uaaaccucUUUUUUCACACACu 2 15 76 97 [mm9:17:46637560-46637581:-] 0.4985 142 7 -12.74 -1.1850 MIMAT0004938 mmu-miR-875-3p 78309 Cul9 guaUCGGAGUCAUAAAAGUcc | |||| | |||||| auaAACCUC--UUUUUUCAca 3 19 75 93 [mm9:17:46637564-46637582:-] 0.4985 131 0 -10.01 -0.1162 MIMAT0004938 mmu-miR-875-3p 78309 Cul9 guaUCGGAGUCAUAAAAGUcc | |||| | |||||| auaAACCUC--UUUUUUCAca 3 19 75 93 [mm9:17:46637564-46637582:-] 0.4985 131 0 -10.01 -0.1051 MIMAT0005843 mmu-miR-1188 78309 Cul9 aggaccGGGUUGGAGUGUGgu :|: ::|||||| uaaaccUCUUUUUUCACAC-- 3 16 76 94 [mm9:17:46637563-46637581:-] 0.4985 123 0 -13.86 -0.1356 MIMAT0005843 mmu-miR-1188 78309 Cul9 aggaccGGGUUGGAGUGUGgu :|: ::|||||| uaaaccUCUUUUUUCACACac 3 16 76 96 [mm9:17:46637561-46637581:-] 0.4985 123 0 -16.22 -0.1002 MIMAT0005845 mmu-miR-466k 78309 Cul9 agUGUACAUGUACAUGUGUGUGu | | | : | | ||||||| auAAACCUCUUUUUUCACACACu 2 22 75 97 [mm9:17:46637560-46637582:-] 0.4985 145 7 -14.20 -1.1885 MIMAT0005859 mmu-miR-1198 78309 Cul9 gguucggucGGUCCUU-GUGUAu |||| || ||||| guucaauucCCAGCAACCACAUg 2 14 173 195 [mm9:17:46666667-46666689:-] 0.5010 121 0 -15.83 -0.4142 MIMAT0007870 mmu-miR-1900 78309 Cul9 acuucCUGGUCUCUCCCG-CCGg ||:| |:|:|||| ||| aauguGAUCUGGGGGGGCUGGCg 2 18 102 124 [mm9:17:46666738-46666760:-] 0.5028 129 0 -26.33 -0.1245 MIMAT0009390 mmu-miR-1927 78309 Cul9 agucagggauuGUAGGUCUCCAg | ||||||||| cacugacugcuCUUCCAGAGGUc 2 13 146 168 [mm9:17:46666694-46666716:-] 0.5014 152 7 -24.90 -0.1863 MIMAT0009397 mmu-miR-1933-3p 78309 Cul9 uaucAGUGUGACUACCAGGACc || : | || ||||||| cugcUCUUCCAGA-GGUCCUGa 2 19 152 172 [mm9:17:46666690-46666710:-] 0.5014 148 7 -14.43 -0.5846 MIMAT0009398 mmu-miR-1934 78309 Cul9 ucUCCUGCUUCGUCCCCUGGUCu || ::| | || ||||||| ggAGUGUGCA-CAUAGGACCAGa 2 22 47 68 [mm9:17:46656593-46656614:-] 0.5510 151 7 -21.36 -0.8632 MIMAT0009426 mmu-miR-1955 78309 Cul9 uuuucGACGUCACGUAGGACCC-UGa || || |||||||||| || cucuuCUUCA--GCAUCCUGGGUACc 2 21 139 162 [mm9:17:46656499-46656522:-] 0.5389 133 0 -23.41 -0.5278 MIMAT0009433 mmu-miR-1960 78309 Cul9 ucgggagaaGAUUGUCGUGACc :||| ||||||| gcucaguggUUAAGAGCACUGa 2 14 130 151 [mm9:17:46666711-46666732:-] 0.5021 153 7 -18.97 -0.3242 MIMAT0009433 mmu-miR-1960 78309 Cul9 ucGGGAGAAGAUUGUCGU--GACc |:||||||| ||||| ||| ugCUCUCUUCU-UCAGCAUCCUGg 2 21 135 157 [mm9:17:46656504-46656526:-] 0.5389 122 0 -30.42 -0.2706 MIMAT0009437 mmu-miR-1964 78309 Cul9 uuucggcCUCGGGUCUUCAGCc |:|: ||||||| aagcaauGGGUAGUGAAGUCGa 2 16 60 81 [mm9:17:46666781-46666802:-] 0.5058 143 7 -18.80 -0.8445 MIMAT0009445 mmu-miR-1274a 78309 Cul9 acCGCGGACUUGUCCCU-GGACu | | ||: || ||| |||| agGGGGAUGGCCAUGGACCCUGa 2 21 13 35 [mm9:17:46666827-46666849:-] 0.5088 120 0 -21.98 -0.4405 MIMAT0000123 mmu-miR-1 78309 Cul9 uaUGUAUGAAGAAA---UGU-AAGGu || | |||:||| ||| |||| aaACCU-CUUUUUUCACACACUUCCc 2 21 77 101 [mm9:17:46637556-46637580:-] 0.4985 121 0 -9.59 -0.5998 MIMAT0000125 mmu-miR-23b 78309 Cul9 ccaUUAGGGACCGUUACACUa :| |::| ||||||| ggaGAGCUUUAAGAAUGUGAu 2 19 89 109 [mm9:17:46666753-46666773:-] 0.5028 146 7 -11.55 -0.2008 MIMAT0000128 mmu-miR-30a 78309 Cul9 gaaggucagcuccuACAAAUGu ||||||| ucugaagcaccuucUGUUUACu 2 9 51 72 [mm9:17:46637585-46637606:-] 0.4985 140 7 -8.03 -0.4219 MIMAT0000128 mmu-miR-30a 78309 Cul9 gaaggucagcuccuACAAAUGu ||||||| ucugaagcaccuucUGUUUACu 2 9 51 72 [mm9:17:46637585-46637606:-] 0.4985 140 7 -8.03 -0.4105 MIMAT0000130 mmu-miR-30b 78309 Cul9 ucgacucacauccuACAAAUGu ||||||| ucugaagcaccuucUGUUUACu 2 9 51 72 [mm9:17:46637585-46637606:-] 0.4985 140 7 -10.24 -0.4219 MIMAT0000130 mmu-miR-30b 78309 Cul9 ucgacucacauccuACAAAUGu ||||||| ucugaagcaccuucUGUUUACu 2 9 51 72 [mm9:17:46637585-46637606:-] 0.4985 140 7 -10.24 -0.4105 MIMAT0000160 mmu-miR-150 78309 Cul9 gugACCAUGUUCCCAACCC-UCu | ||:| | ||||||| || gagUCGUGCUA-GGUUGGGCAGu 2 20 67 88 [mm9:17:46656573-46656594:-] 0.5188 125 0 -18.11 -0.1575 MIMAT0000238 mmu-miR-205 78309 Cul9 gucugaggccaccuuACUUCCu |||||| uccaaauaaaaauauUGAAGGc 2 8 229 250 [mm9:17:46656411-46656432:-] 0.5563 120 6 -8.17 -0.1222 MIMAT0000248 mmu-miR-30e 78309 Cul9 gaaggucaguuccuACAAAUGu ||||||| ucugaagcaccuucUGUUUACu 2 9 51 72 [mm9:17:46637585-46637606:-] 0.4985 140 7 -8.19 -0.4156 MIMAT0000248 mmu-miR-30e 78309 Cul9 gaaggucaguuccuACAAAUGu ||||||| ucugaagcaccuucUGUUUACu 2 9 51 72 [mm9:17:46637585-46637606:-] 0.4985 140 7 -8.19 -0.4043 MIMAT0000514 mmu-miR-30c 78309 Cul9 cgacucucacauccuACAAAUGu ||||||| gucugaagcaccuucUGUUUACu 2 9 50 72 [mm9:17:46637585-46637607:-] 0.4497 140 7 -11.27 -0.3389 MIMAT0000514 mmu-miR-30c 78309 Cul9 cgacucucacauccuACAAAUGu ||||||| gucugaagcaccuucUGUUUACu 2 9 50 72 [mm9:17:46637585-46637607:-] 0.4497 140 7 -11.27 -0.3290 MIMAT0000515 mmu-miR-30d 78309 Cul9 gaaggucagccccuACAAAUGu ||||||| ucugaagcaccuucUGUUUACu 2 9 51 72 [mm9:17:46637585-46637606:-] 0.4985 140 7 -7.81 -0.4219 MIMAT0000515 mmu-miR-30d 78309 Cul9 gaaggucagccccuACAAAUGu ||||||| ucugaagcaccuucUGUUUACu 2 9 51 72 [mm9:17:46637585-46637606:-] 0.4985 140 7 -7.81 -0.4105 MIMAT0000528 mmu-miR-18a 78309 Cul9 gauaGACGUGAUCUACGUGGAAu | |::: || ||||||| uuccCAGUGUCUGAAGCACCUUc 2 20 42 64 [mm9:17:46637593-46637615:-] 0.4497 151 7 -15.28 -0.5157 MIMAT0000528 mmu-miR-18a 78309 Cul9 gauaGACGUGAUCUACGUGGAAu | |::: || ||||||| uuccCAGUGUCUGAAGCACCUUc 2 20 42 64 [mm9:17:46637593-46637615:-] 0.4497 151 7 -15.28 -0.5464 MIMAT0000532 mmu-miR-23a 78309 Cul9 ccUUUAGGGACCGUUACACUa |:| |::| ||||||| ggAGAGCUUUAAGAAUGUGAu 2 20 89 109 [mm9:17:46666753-46666773:-] 0.5028 151 7 -15.69 -0.2008 MIMAT0000546 mmu-miR-103 78309 Cul9 agUAUCGGGACAUGUUACG-ACGa ||||:| ||: :|||| ||| gaAUAGUCACGUG-GAUGCUUGCu 2 22 116 138 [mm9:17:46656523-46656545:-] 0.5215 127 0 -19.93 -0.3701 MIMAT0000548 mmu-miR-322 78309 Cul9 agguuuUGUACUUAACG-ACGAc ||:||:| ||| |||| auagucACGUGGA-UGCUUGCUc 2 17 118 139 [mm9:17:46656522-46656543:-] 0.5215 122 0 -15.94 -0.3987 MIMAT0000565 mmu-miR-328 78309 Cul9 ugccUUCCCGUCUCUC-CCGGUc :||| | :||| ||||| agcaGAGGAAAAGGAGAGGCCAc 2 19 18 40 [mm9:17:46656621-46656643:-] 0.5510 122 0 -18.99 -0.2528 MIMAT0000647 mmu-miR-107 78309 Cul9 acUAUCGGGACAUGUUACG-ACGa ||||:| ||: :|||| ||| gaAUAGUCACGUG-GAUGCUUGCu 2 22 116 138 [mm9:17:46656523-46656545:-] 0.5215 127 0 -19.73 -0.3701 MIMAT0000654 mmu-miR-32 78309 Cul9 acguugaaUCAUUACACGU-UAu || |:|||||| || caccaggcAGGAGUGUGCACAUa 2 15 38 60 [mm9:17:46656601-46656623:-] 0.5510 122 0 -13.82 -0.1522 MIMAT0000668 mmu-miR-211 78309 Cul9 ucCGUUUCCUACUGUUUCC-CUu |||: || || ||||| || ugGCAGCAGAGGA-AAAGGAGAg 2 21 14 35 [mm9:17:46656626-46656647:-] 0.5510 122 0 -19.12 -0.1552 MIMAT0004745 mmu-miR-384-5p 78309 Cul9 ugUAACGGA--UCCU--UA-ACAAAUGu | ||:|| || | | ||||||| ccAGUGUCUGAAGCACCUUCUGUUUACu 2 22 45 72 [mm9:17:46637585-46637612:-] 0.4497 142 7 -11.83 -0.3417 MIMAT0004745 mmu-miR-384-5p 78309 Cul9 ugUAACGGA--UCCU--UA-ACAAAUGu | ||:|| || | | ||||||| ccAGUGUCUGAAGCACCUUCUGUUUACu 2 22 45 72 [mm9:17:46637585-46637612:-] 0.4497 142 7 -11.83 -0.3317 MIMAT0003184 mmu-miR-487b 78309 Cul9 uucACCUACUG-GGACAUG-CUAa || | |:| ||||||| ||| cccUGAAGGGCUCCUGUACUGAUu 2 20 30 53 [mm9:17:46666809-46666832:-] 0.5088 130 0 -19.91 -0.1324 MIMAT0003456 mmu-miR-495 78309 Cul9 uucuuCACGUGGUACAA-ACAAa | |:|||| ||| |||| auccuGGGUACCA-GUUCUGUUu 2 18 151 172 [mm9:17:46656489-46656510:-] 0.5563 123 0 -14.07 -0.2143 MIMAT0004858 mmu-miR-18b 78309 Cul9 gauuGUCGUGAUCUACGUGGAAu |||::: || ||||||| uuccCAGUGUCUGAAGCACCUUc 2 20 42 64 [mm9:17:46637593-46637615:-] 0.4497 159 7 -16.00 -0.5157 MIMAT0004858 mmu-miR-18b 78309 Cul9 gauuGUCGUGAUCUACGUGGAAu |||::: || ||||||| uuccCAGUGUCUGAAGCACCUUc 2 20 42 64 [mm9:17:46637593-46637615:-] 0.4497 159 7 -16.00 -0.5464 MIMAT0004899 mmu-miR-92b 78309 Cul9 ccUCCGGCCCUGCUCACGU-UAu ||| | ||| | ||||| || ccAGG-CAGGA-GUGUGCACAUa 2 21 40 60 [mm9:17:46656601-46656621:-] 0.5510 120 0 -18.32 -0.1493

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G046163 Cul9 Mus musculus 78309

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Parc mmu-miR-18a beg:45 end:64 pic:3' GATAGACGTGATCTACGTGGAAT 5'& | . || ||||||| &5' ------GTGTCTGAAGCACCTT- 3' Parc mmu-miR-10b beg:11 end:27 pic:3' GTGTTTAAGCCAAGATGTCCCAT 5'& || | .||||||. &5' ---------GGGCC-GCAGGGTG 3' Parc mmu-miR-122 beg:89 end:100 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& ||||||.| &5' -------------CACACTTC- 3' Parc mmu-miR-150 beg:16 end:37 pic:3' GTGACCATGTTCC-CA--ACCCTCT 5'& .||.|| || ||||||| &5' -------GCAGGGTGTCATGGGAGA 3' Parc mmu-miR-18b beg:43 end:64 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& ||| . || ||||||| &5' ----CAGTGTCTGAAGCACCTT- 3' Parc mmu-miR-2141 beg:82 end:101 pic:3' TTGAAAAGACTGTGGAGGA 5'& .||||| ||||.||| &5' --TTTTTCACACACTTCC- 3' Parc mmu-miR-296-5p beg:26 end:47 pic:3' TGTCCTAACTCCCCCCCGGGA 5'& |..||| |||||| ||| &5' ATGGGA--GAGGGGATTCCC- 3' Parc mmu-miR-450b-3p beg:26 end:50 pic:3' TACGTACGTTTTA--C-AAGGGTTA 5'& |||| .|.| | ||||||.| &5' ---CATGGGAGAGGGGATTCCCAGT 3' Parc mmu-miR-489 beg:8 end:31 pic:3' CGA--CGGTATATACACCACAGTAA 5'& || |||. |||||||| &5' GCAGGGCCGCAG----GGTGTCAT- 3' Parc mmu-miR-615-3p beg:30 end:56 pic:3' TTCTCCCTCT-GGGTCCGAGCCT 5'& .||||||. ||||| || || &5' GAGAGGGGATTCCCAGTGTCTGA 3' Parc mmu-miR-667 beg:8 end:30 pic:3' GAACCCGACCCACCGT-CCACAGT 5'& |||| ||| ||| ||||||| &5' ---GGGCAGGGCCGCAGGGTGTCA 3' Parc mmu-miR-677 beg:54 end:76 pic:3' AGTCTTCGATT-AGT--AGTGACTT 5'& |||| || |.|||||| &5' ----AAGCACCTTCTGTTTACTGAA 3' Parc mmu-miR-878-3p beg:13 end:32 pic:3' AGATGG-GTCACACCACAGTACG 5'& .|| ||| ||||||||| &5' ---GCCGCAG---GGTGTCATG- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cul9 RAID00075044 mmu-miR-107-3p miRNA MIMAT0000647 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID00088806 mmu-miR-487b-3p miRNA MIMAT0003184 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID00291380 mmu-miR-466k miRNA MIMAT0005845 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID00494589 mmu-miR-92b-3p miRNA MIMAT0004899 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID00660272 mmu-miR-30a-5p miRNA MIMAT0000128 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID00917392 mmu-miR-30d-5p miRNA MIMAT0000515 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID00946413 mmu-miR-18a-5p miRNA MIMAT0000528 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID00999711 mmu-miR-23a-3p miRNA MIMAT0000532 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID01450753 mmu-miR-329-5p miRNA MIMAT0017032 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID01792256 mmu-miR-205-5p miRNA MIMAT0000238 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID02059684 mmu-miR-32-5p miRNA MIMAT0000654 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID02522651 mmu-miR-30e-5p miRNA MIMAT0000248 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID02577432 mmu-miR-466i-5p miRNA MIMAT0017325 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID02729191 mmu-miR-466d-5p miRNA MIMAT0004930 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID02732008 mmu-miR-328-3p miRNA MIMAT0000565 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID03025950 mmu-miR-103-3p miRNA MIMAT0000546 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID03195873 mmu-miR-23b-3p miRNA MIMAT0000125 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID03376898 mmu-miR-322-5p miRNA MIMAT0000548 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID03469310 mmu-miR-495-3p miRNA MIMAT0003456 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID03539973 mmu-miR-1a-3p miRNA MIMAT0000123 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID03540282 mmu-miR-384-5p miRNA MIMAT0004745 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID03632272 mmu-miR-211-5p miRNA MIMAT0000668 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID03749846 mmu-miR-30b-5p miRNA MIMAT0000130 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID03874624 mmu-miR-150-5p miRNA MIMAT0000160 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID03880024 mmu-miR-30c-5p miRNA MIMAT0000514 Cul9 mRNA 78309 Prediction 0.1828 Cul9 RAID04051511 mmu-miR-18b-5p miRNA MIMAT0004858 Cul9 mRNA 78309 Prediction 0.1828