DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence March9 ATTTA 431-1477 1988-1992 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT015968 mmu-miR-124-3p Mus musculus March9 216438 Mus musculus Microarray Functional MTI (Weak) 18619591 MIRT012298 mmu-let-7b-5p Mus musculus March9 216438 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT010102 mmu-miR-17-5p Mus musculus March9 216438 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT009348 mmu-miR-7b-5p Mus musculus March9 216438 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004522 mmu-miR-27b* 216438 March9 caAGUGGUUAGUCG--AUUC-GAGa |:||| ||||| |||| ||| cuUUACC--UCAGCUUUAAGCCUCc 2 21 283 305 [mm9:10:126493322-126493344:-] 0.6884 124 0 -18.16 -0.7346 MIMAT0000143 mmu-miR-9* 216438 March9 ugaaagccAAUAGA-UCGAAAUa ||| || ||||||| aaccaucuUUACCUCAGCUUUAa 2 15 277 299 [mm9:10:126493328-126493350:-] 0.6942 153 7 -8.51 -0.6281 MIMAT0004534 mmu-miR-145* 216438 March9 guucuugucauaaAGGUCCUUa |||||||| ------ccuggacUCCAGGAAc 2 10 1 16 [mm9:10:126493611-126493626:-] 0.6725 145 7 -13.20 -0.2434 MIMAT0004547 mmu-miR-203* 216438 March9 acaacUUGACAGUUCUUGGUGa || | :|||||||| caggcAAGCGGGGAGAACCACu 2 18 240 261 [mm9:10:126493366-126493387:-] 0.6499 149 7 -17.93 -0.7224 MIMAT0004635 mmu-miR-92a* 216438 March9 cauuacGGUGGUUAGGGGUGGa || ||| |||||||| agacacCCCCCACUCCCCACCc 2 17 370 391 [mm9:10:126493236-126493257:-] 0.6949 164 7 -25.18 -0.2949 MIMAT0004635 mmu-miR-92a* 216438 March9 cauuaCGGUGGU-UAGGGGUGGa | ||| : : ||||||| uuuggGGCACGGUGACCCCACCa 2 18 89 111 [mm9:10:126493516-126493538:-] 0.6289 144 7 -20.74 -0.6200 MIMAT0005444 mmu-miR-218-2* 216438 March9 gcgccACGAACUGUCUUGGUAc | || || |||||||| uuucuUCCUGGAGAGAACCAUc 2 18 262 283 [mm9:10:126493344-126493365:-] 0.6720 161 7 -14.92 -0.9191 MIMAT0004666 mmu-miR-33* 216438 March9 cacuacgugacaccUUUGUAAc ||||||| gcaauaagacuacuAAACAUUg 2 9 411 432 [mm9:10:126493195-126493216:-] 0.7071 140 7 -10.27 -0.6833 MIMAT0001094 mmu-miR-412 216438 March9 gccGAUC-ACCUGGU-CCACUu ||:| | |||| ||||| cccCUGGCUCCACCAUGGUGAc 2 18 309 330 [mm9:10:126493297-126493318:-] 0.6827 120 0 -17.73 -0.2712 MIMAT0004753 mmu-miR-431* 216438 March9 ucuUCGG-GACGUUC-UGCUGGAc :||: ||| |:| ||||||| cccGGCUGCUGGAGGUACGACCUa 2 20 56 79 [mm9:10:126493548-126493571:-] 0.6289 157 7 -22.95 -0.4297 MIMAT0002105 mmu-miR-464 216438 March9 auaGAGUGUCUUAU--UUGAACCAu ||| || ||: :||||||| uggCUC-CACCAUGGUGACUUGGUa 2 21 313 336 [mm9:10:126493291-126493314:-] 0.6827 149 7 -17.51 -0.3522 MIMAT0015219 mmu-miR-3475 216438 March9 aaguUUGGUACACGGAGGUCu |:|: | |||||||| ccucAGCUUUAAGCCUCCAGu 2 18 288 308 [mm9:10:126493319-126493339:-] 0.6884 153 7 -18.89 -0.4918 MIMAT0003495 mmu-miR-705 216438 March9 acggGUGGGGUG-GA-GGGUGg |||||| | || ||||| uagaCACCCCCCACUCCCCACc 2 17 369 390 [mm9:10:126493237-126493258:-] 0.6949 127 0 -33.26 -0.1643 MIMAT0004842 mmu-miR-879 216438 March9 ccgaaucUCGAUAUUCGGAGa |||| |||||||| uuaccucAGCUUUAAGCCUCc 2 15 285 305 [mm9:10:126493322-126493342:-] 0.6884 162 7 -17.70 -0.7973 MIMAT0004868 mmu-miR-343 216438 March9 agACCCGUGUAC---UUCCCUCu ||| || || ||||||| caUGGUGACUUGGUAAAGGGAGa 2 19 322 344 [mm9:10:126493283-126493305:-] 0.6827 149 7 -18.75 -0.8716 MIMAT0005830 mmu-miR-466l 216438 March9 uuauacacacguacaUAAAUAu |||||| agggcauaaagaaucAUUUAUa 2 8 496 517 [mm9:10:126493110-126493131:-] 0.7162 120 6 -4.43 -0.1331 MIMAT0005838 mmu-miR-669j 216438 March9 acaaacguacacucAUAUACGu ||||||| cauaaagaaucauuUAUAUGCg 2 9 500 521 [mm9:10:126493106-126493127:-] 0.7162 140 7 -8.18 -1.1213 MIMAT0005840 mmu-miR-669i 216438 March9 cauacguacacACAUAUACGu | ||||||| auaaagaaucaUUUAUAUGCg 2 11 501 521 [mm9:10:126493106-126493126:-] 0.7162 142 7 -8.18 -1.1213 MIMAT0005849 mmu-miR-1191 216438 March9 auCCCGAUGUAUC---AUUCUGAc |||| |: |:| ||||||| caGGGC-AUCUGGCAAUAAGACUa 2 20 400 422 [mm9:10:126493205-126493227:-] 0.7071 148 7 -16.30 -1.1667 MIMAT0007877 mmu-miR-1894-5p 216438 March9 ucucCGUCCACCAUCCCCUCUc ||||| ||||||| gccaGCAGGCAAGCGGGGAGAa 2 19 235 256 [mm9:10:126493371-126493392:-] 0.6499 150 7 -22.20 -0.4277 MIMAT0009399 mmu-miR-1935 216438 March9 ucUCUAGGCGGUCGGA-GACGGa | ||: ||:|||| ||||| agACAUUGUCCGGCCUACUGCCc 2 21 144 166 [mm9:10:126493461-126493483:-] 0.6339 132 0 -25.18 -0.1000 MIMAT0009428 mmu-miR-1956 216438 March9 aggcgacugagucgGGACCUGa ||||||| --------------CCUGGACu 2 9 1 8 [mm9:10:126493619-126493626:-] 0.6725 140 7 -17.37 -0.3264 MIMAT0011210 mmu-miR-2134 216438 March9 cgUGGGGCAAAGGGU-UCUg :::|| |||||| ||| acGUUCCAGUUCCCACAGAc 2 18 189 208 [mm9:10:126493419-126493438:-] 0.6419 121 0 -24.47 -0.3029 MIMAT0011214 mmu-miR-2138 216438 March9 uaaggcgguucGGGCAAGGGAa |||||||||| aacauugaccuCCCGUUCCCUg 2 12 426 447 [mm9:10:126493180-126493201:-] 0.7071 155 7 -24.96 -0.2098 MIMAT0015642 mmu-miR-3471 216438 March9 uuacGGAAUGUCA-ACCUAGAGu || || | ||||||| ugacCCCACCACUGAGGAUCUCu 2 19 101 123 [mm9:10:126493504-126493526:-] 0.6289 141 7 -13.21 -0.3222 MIMAT0000127 mmu-miR-29b 216438 March9 uuGUGACUAAAGU-UUACCAC-GAu | |||: | || |||||| || ucCCCUGGCUCCACCAUGGUGACUu 2 22 308 332 [mm9:10:126493295-126493319:-] 0.6827 124 0 -13.46 -0.4892 MIMAT0000151 mmu-miR-140 216438 March9 gaUGGUAUCCCAUUUUGGUGAc :| | ||| |:||||||| agGCAAGCGGGGAGAACCACUu 2 21 241 262 [mm9:10:126493365-126493386:-] 0.6499 160 7 -18.10 -0.3552 MIMAT0000208 mmu-miR-10b 216438 March9 guguuuaagccaaGAUGUCCCAu | ||||||| uccggccuacugcCCACAGGGUa 2 11 152 174 [mm9:10:126493453-126493475:-] 0.6339 142 7 -16.93 -0.2065 MIMAT0000237 mmu-miR-204 216438 March9 uccGUAUC-CU--ACUGUUUCCCUu |||:| || ||::||||||| cacCAUGGUGACUUGGUAAAGGGAg 2 20 319 343 [mm9:10:126493284-126493308:-] 0.6827 161 7 -23.04 -0.3072 MIMAT0000247 mmu-miR-143 216438 March9 cucgaUGUCACGAAGUA-GAGu ||| || |||| ||| cacagACACCGCCUCAUACUCa 2 17 202 223 [mm9:10:126493404-126493425:-] 0.6499 120 0 -12.74 -0.6686 MIMAT0000648 mmu-miR-10a 216438 March9 guguuuaagccuaGAUGUCCCAu | ||||||| uccggccuacugcCCACAGGGUa 2 11 152 174 [mm9:10:126493453-126493475:-] 0.6339 142 7 -16.88 -0.2065 MIMAT0000666 mmu-miR-320 216438 March9 agcGGGAGAGUUGG-GUCGAAAa || |||: ||| ||||||| gaaCCAUCUUUACCUCAGCUUUa 2 20 276 298 [mm9:10:126493329-126493351:-] 0.6942 166 7 -20.50 -0.9439 MIMAT0000667 mmu-miR-33 216438 March9 acguuacGUUGAUGUUACGUg :|| | ||||||| gggaucuUAAGU-CAAUGCAu 2 15 18 37 [mm9:10:126493590-126493609:-] 0.6383 144 7 -10.04 -0.1146 MIMAT0000668 mmu-miR-211 216438 March9 uccGUUUC-CU--ACUGUUUCCCUu || :| || ||::||||||| cacCAUGGUGACUUGGUAAAGGGAg 2 20 319 343 [mm9:10:126493284-126493308:-] 0.6827 153 7 -18.79 -0.3072 MIMAT0000671 mmu-miR-224 216438 March9 uuGCCUUGGUG--AUCACUGAAu :|| |||| |:||||||| ccUGGCUCCACCAUGGUGACUUg 2 20 311 333 [mm9:10:126493294-126493316:-] 0.6827 158 7 -23.26 -0.2087 MIMAT0001095 mmu-miR-370 216438 March9 ugguccaagguggGGUCGUCCg |||||||| accuugaggauggCCAGCAGGc 2 10 223 244 [mm9:10:126493383-126493404:-] 0.6499 145 7 -22.38 -0.1443 MIMAT0001533 mmu-miR-448 216438 March9 uaccCUGUAGGAUGUAUACGUu || ||| | :||||||: uaaaGA-AUCAUUUAUAUGCG- 2 19 502 521 [mm9:10:126493106-126493125:-] 0.7162 140 0 -11.31 -0.1432 MIMAT0003486 mmu-miR-491 216438 March9 ggaguaccuucccaAGGGGUGa ||||||| uagacaccccccacUCCCCACc 2 9 369 390 [mm9:10:126493237-126493258:-] 0.6949 140 7 -16.13 -0.1310 MIMAT0004853 mmu-miR-874 216438 March9 agccaGGGAGCCCG-GUCCCGUc ||| :|| | ||||||| cccacCCCAUGGCCACAGGGCAu 2 18 385 407 [mm9:10:126493220-126493242:-] 0.7071 156 7 -23.56 -0.4576 MIMAT0004855 mmu-miR-876-3p 216438 March9 acuuaaugaaaCAUUUGGUGAu | :||||||| aggcaagcgggGAGAACCACUu 2 12 241 262 [mm9:10:126493365-126493386:-] 0.6499 143 7 -11.56 -0.3668 MIMAT0004889 mmu-miR-504 216438 March9 cuAUCUCACGU-CUGGUCCC-AGa |:|| | || || ||||| || ccUGGACUCCAGGAACAGGGAUCu 2 21 1 24 [mm9:10:126493603-126493626:-] 0.6611 127 0 -18.80 -0.9034

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G070139 March9 Mus musculus 216438

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile March9 mmu-miR-879 beg:289 end:305 pic:3' CCGAATCTCGATATTCGGAGA 5'& |||| |||||||| &5' -------AGCTTTAAGCCTC- 3' March9 mmu-miR-343 beg:327 end:345 pic:3' AGACCCGTGTACTTCCCTCT 5'& || ||.| |||||||| &5' -CTTGGTA----AAGGGAGA 3' March9 mmu-miR-10a beg:164 end:175 pic:3' GTGTTTAAGCCTAGATGTCCCAT 5'& |||||||| &5' ---------------ACAGGGTA 3' March9 mmu-miR-10b beg:164 end:175 pic:3' GTGTTTAAGCCAAGATGTCCCAT 5'& |||||||| &5' ---------------ACAGGGTA 3' March9 mmu-miR-431star beg:61 end:79 pic:3' TCTTCGGGACGTTC-TGCTGGAC 5'& ||| |.| ||||||| &5' -------CTGGAGGTACGACCT- 3' March9 mmu-miR-464 beg:319 end:337 pic:3' ATAGAGTGTCTTATTTGAACCAT 5'& ||..| .|||||||| &5' -----CATGGT---GACTTGGTA 3' March9 mmu-miR-145star beg:1 end:16 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& |.|| |||||||| &5' ---GGAC------TCCAGGAA- 3' March9 mmu-miR-92astar beg:374 end:391 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& || ||| |||||||| &5' ------CC-CCACTCCCCACC- 3' March9 mmu-miR-1965 beg:44 end:63 pic:3' ACG--CGGTGATGCCGGGCCGAA 5'& || ||| || ||||||| &5' -GCGAGCC-CT----CCCGGCT- 3' March9 mghv-miR-M1-3 beg:208 end:228 pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& ||| ||| |||||||. &5' ---CGC--CTCATACTCACCTT 3' March9 mmu-miR-218-2star beg:269 end:283 pic:3' GCGCCACGAACTGTCTTGGTAC 5'& || |||||||| &5' ----------GAGAGAACCAT- 3' March9 mcmv-miR-m21-1 beg:304 end:315 pic:3' GCCGAACTTGCACAGGGGATA 5'& |||||||. &5' ------------GTCCCCTG- 3' March9 mcmv-miR-M23-2 beg:362 end:382 pic:3' GGCGAA--CTGGCTCCGGGGGTA 5'& ||| ||| |||||| &5' --GCTGTAGACAC---CCCCCA- 3' March9 mcmv-miR-M87-1 beg:44 end:66 pic:3' CGA-CGGCGACGGCTGCCGACGGA 5'& || ||| || || |||||||. &5' GCGAGCC-CT-CC--CGGCTGCT- 3' March9 mghv-miR-M1-6 beg:272 end:299 pic:3' TTTTGGTGG-AGTGT-GTCAAAGT 5'& |.|||||.| |.|| ||| ||.| &5' AGAACCATCTTTACCTCAGCTTTA 3' March9 mmu-let-7a beg:272 end:293 pic:3' TTGATATGTTGGAT--GATGGAGT 5'& | |||| .||||||| &5' ------AGAACCATCTTTACCTCA 3' March9 mmu-let-7b beg:274 end:293 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& |||||. || .||||||| &5' AACCAT-----CT-TTACCTCA 3' March9 mmu-let-7c beg:274 end:293 pic:3' TTGGTATGTTGGATGATGGAGT 5'& |||||| || .||||||| &5' AACCAT-----CT-TTACCTCA 3' March9 mmu-let-7d beg:274 end:292 pic:3' TTGATACGTTGGAT--GATGGAGA 5'& |||| .|||||| &5' --------AACCATCTTTACCTC- 3' March9 mmu-let-7e beg:272 end:293 pic:3' TTGATATGTTGG-AG-GATGGAGT 5'& | |||| || .||||||| &5' ------AGAACCATCTTTACCTCA 3' March9 mmu-let-7f beg:275 end:293 pic:3' TTGATATGTTAGATGATGGAGT 5'& || |||| .||||||| &5' ------ACCATCT-TTACCTCA 3' March9 mmu-let-7g beg:273 end:293 pic:3' TTGACATGTTTGATGATGGAGT 5'& | || || .||||||| &5' ----GAACCATCT-TTACCTCA 3' March9 mmu-let-7i beg:272 end:293 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& || || || .||||||| &5' ---AGAACCATCT-TTACCTCA 3' March9 mmu-miR-1193 beg:322 end:333 pic:3' CTATCATTTTGCCCACTGGAT 5'& ||||||.|. &5' ------------GGTGACTTG 3' March9 mmu-miR-133b beg:328 end:349 pic:3' ATCGACCAACTTCCC-CTGGTTT 5'& .|||| ||||| |||||| &5' ---TTGGTA-AAGGGAGACCAA- 3' March9 mmu-miR-138 beg:119 end:141 pic:3' GCCGGACTAAGTGTT-GTGGTCGA 5'& .||| | |||. |.|||||| &5' ---TCTG-TGGACAGCCGCCAGCT 3' March9 mmu-miR-139-5p beg:355 end:373 pic:3' GACCTCTGTGCACGTGACATCT 5'& ||| | .||||||| &5' ------ACAAG-GGGCTGTAGA 3' March9 mmu-miR-140 beg:407 end:425 pic:3' GATGGTATCCC--ATTTTGGTGAC 5'& || |||.||.||| &5' --------GGCAATAAGACTACT- 3' March9 mmu-miR-140 beg:240 end:262 pic:3' GATGGTA-TCCCATTTTGGTGAC 5'& .| .||| |.||||||| &5' --GCAAGCGGGG-AGAACCACT- 3' March9 mmu-miR-140 beg:493 end:514 pic:3' GATGGTATCCCA----TTTTGGTGAC 5'& |||| |.||.||.| &5' -------AGGGCATAAAGAATCATT- 3' March9 mmu-miR-145 beg:52 end:69 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& ||| || .||||| &5' ------TCCCGGCT--GCTGGA- 3' March9 mmu-miR-149 beg:24 end:46 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& ||| || .||. ||||||| &5' ---AGTCAATGCATC-AGCCAGA 3' March9 mmu-miR-182 beg:336 end:356 pic:3' GCCACACTCAAGATGGTAACGGTTT 5'& |.| |||| |||||.| &5' ------GGGAG--ACCAATGCCAGA 3' March9 mmu-miR-1894-5p beg:236 end:256 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& ||||| ||||||| &5' ----GCAGGCAAGCGGGGAGA- 3' March9 mmu-miR-1929 beg:257 end:274 pic:3' GAGACGAGATATTTCAGGATCTT 5'& || .||| ||||.||. &5' --CTTTTCT------TCCTGGAG 3' March9 mmu-miR-1958 beg:254 end:267 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& |||||||.|| &5' -----------CCACTTTTCT- 3' March9 mmu-miR-1961 beg:282 end:293 pic:3' AAGATTGATGATGGAGT 5'& .||||||| &5' ---------TTACCTCA 3' March9 mmu-miR-1968 beg:48 end:65 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& .|| ||| |.||||| &5' -----GCCCTCC----CGGCTGC- 3' March9 mmu-miR-203star beg:246 end:261 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& | .||||||||| &5' ---------GGGGAGAACCACT 3' March9 mmu-miR-203star beg:266 end:283 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& ||| .|||||||. &5' -------CTGGAGAGAACCAT- 3' March9 mmu-miR-211 beg:322 end:344 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& || | || |||||||. &5' -GGTGACT--TGGTAAAGGGAG 3' March9 mmu-miR-2138 beg:427 end:447 pic:3' TAAGGC-GGTTCGGGCAAGGGAA 5'& ..| || |||||||||| &5' ---TTGACCT--CCCGTTCCCT- 3' March9 mmu-miR-224 beg:311 end:333 pic:3' TTGCCTTGGTG--ATCACTGAAT 5'& || |||| |.|||||||. &5' ---GGCTCCACCATGGTGACTTG 3' March9 mmu-miR-320 beg:276 end:298 pic:3' AGCGGG-AGAGTTGG-GTCGAAAA 5'& || |||. ||| ||||||| &5' ----CCATCTTTACCTCAGCTTT- 3' March9 mmu-miR-338-3p beg:56 end:69 pic:3' GTTGTTTTAGTGACT-ACGACCT 5'& |. ||||||| &5' -------------GGCTGCTGGA 3' March9 mmu-miR-339-5p beg:0 end:22 pic:3' GCACTCGAGGACCTCCTGTCCCT 5'& || |||| ||| ||||||| &5' --TGGACTCCAGGA--ACAGGGA 3' March9 mmu-miR-33star beg:131 end:152 pic:3' CACTACG--TGACACCTTTGTAAC 5'& || .|| ||||.|||||| &5' -----GCCAGCT-TGGAGACATTG 3' March9 mmu-miR-3471 beg:12 end:27 pic:3' TTACGGAATGTCAACCTAGAGT 5'& |||| ||||||.| &5' --------ACAG--GGATCTTA 3' March9 mmu-miR-3475 beg:287 end:308 pic:3' AAGTTTGGTACACGGAGGTCT 5'& || |.|. |||||||| &5' -TC-AGCTTTAAGCCTCCAG- 3' March9 mmu-miR-34a beg:150 end:166 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& ||.|| .|||||| &5' ----CCGGCC----TACTGCC- 3' March9 mmu-miR-34c beg:151 end:166 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& |.|| .|||||| &5' -----CGGCC-----TACTGCC- 3' March9 mmu-miR-432 beg:0 end:15 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& |||. ||||||.|| &5' -------CTGG---ACTCCAGGA 3' March9 mmu-miR-449a beg:150 end:166 pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||.|| .|||||| &5' -CCGGCC-------TACTGCC- 3' March9 mmu-miR-665 beg:257 end:273 pic:3' TCCCTGGAGTCGGAGGACCA 5'& ||. |.|||||| &5' ------CTTTTCTTCCTGG- 3' March9 mmu-miR-671-5p beg:299 end:320 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& ||||||.||| |. ||| ||| &5' CTCCAGTCCC-CT--GGC-TCC- 3' March9 mmu-miR-698 beg:489 end:510 pic:3' TCCCTTCCTTTGC-TCTTAC 5'& .|||||||. |. ||||| &5' GGGGAAGGGCATAAAGAAT- 3' March9 mmu-miR-744 beg:464 end:478 pic:3' ACGACAATCGGGATCGGGGCGT 5'& |||| ||.|||| &5' ---------CCCT-GCTCCGC- 3' March9 mmu-miR-744 beg:434 end:450 pic:3' ACGACAATCGGGATCGGGGCGT 5'& ||| |||.||| &5' ---------CCCGTTCCCTGCA 3' March9 mmu-miR-744star beg:398 end:417 pic:3' TCCAACTCCAATC-ACCGTTGTC 5'& ||| ||||||.| &5' ------AGGGCATCTGGCAATA- 3' March9 mmu-miR-760 beg:195 end:215 pic:3' AGGGGTGTCTG-GGTCTCGGC 5'& |.||||||||| || ||| &5' TTCCCACAGACACC---GCC- 3' March9 mmu-miR-760 beg:386 end:406 pic:3' AGGGGTGTCTGG-GTCTCGGC 5'& |||||. |.|| |||.|| &5' -CCCCAT-GGCCACAGGGC-- 3' March9 mmu-miR-874 beg:386 end:407 pic:3' AGCCAGGGAGCCCGG--TCCCGTC 5'& ||| |||| |||||| &5' -----CCCCATGGCCACAGGGCA- 3' March9 mmu-miR-92astar beg:91 end:111 pic:3' CATTACGGTGGTTA-GGGGTGGA 5'& | ||| . ||||||| &5' -----GGCACGGTGACCCCACC- 3' March9 mmu-miR-92astar beg:467 end:486 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& |||. ||. ||||||. &5' ----TGCT-CCGCCCCCCACT- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score March9 RAID00019321 mmu-miR-33-5p miRNA MIMAT0000667 March9 mRNA 216438 Prediction 0.1828 March9 RAID00252240 mmu-miR-370-3p miRNA MIMAT0001095 March9 mRNA 216438 Prediction 0.1828 March9 RAID00427765 mmu-miR-29c-3p miRNA MIMAT0000536 March9 mRNA 216438 Prediction 0.1828 March9 RAID00685550 mmu-miR-320-3p miRNA MIMAT0000666 March9 mRNA 216438 Prediction 0.1828 March9 RAID00821881 mmu-miR-874-3p miRNA MIMAT0004853 March9 mRNA 216438 CLIP-seq//Prediction 0.6478 March9 RAID00905887 mmu-miR-137-3p miRNA MIMAT0000149 March9 mRNA 216438 CLIP-seq//Prediction 0.6478 March9 RAID01068644 mmu-let-7b-5p miRNA MIMAT0000522 March9 mRNA 216438 NGS (Next Generation Sequencing) 0.5483 March9 RAID01793375 mmu-miR-7b-5p miRNA MIMAT0000678 March9 mRNA 216438 NGS (Next Generation Sequencing) 0.5483 March9 RAID01826639 mmu-miR-216b-5p miRNA MIMAT0003729 March9 mRNA 216438 Prediction 0.1828 March9 RAID01826918 mmu-miR-7682-3p miRNA MIMAT0029885 March9 mRNA 216438 Prediction 0.1828 March9 RAID01869290 mmu-miR-211-5p miRNA MIMAT0000668 March9 mRNA 216438 Prediction 0.1828 March9 RAID01952874 mmu-miR-140-5p miRNA MIMAT0000151 March9 mRNA 216438 Prediction 0.1828 March9 RAID02121643 mmu-miR-29b-3p miRNA MIMAT0000127 March9 mRNA 216438 Prediction 0.1828 March9 RAID02181659 mmu-miR-92a-2-5p miRNA MIMAT0004635 March9 mRNA 216438 Prediction 0.1828 March9 RAID02260763 mmu-miR-10a-5p miRNA MIMAT0000648 March9 mRNA 216438 Prediction 0.1828 March9 RAID02303486 mmu-miR-224-5p miRNA MIMAT0000671 March9 mRNA 216438 Prediction 0.2202 March9 RAID02341589 mmu-miR-17-5p miRNA MIMAT0000649 March9 mRNA 216438 NGS (Next Generation Sequencing) 0.5483 March9 RAID02382431 mmu-miR-6419 miRNA MIMAT0025175 March9 mRNA 216438 Prediction 0.1828 March9 RAID02520854 mmu-miR-98-5p miRNA MIMAT0000545 March9 mRNA 216438 Prediction 0.1828 March9 RAID02653150 mmu-miR-491-5p miRNA MIMAT0003486 March9 mRNA 216438 CLIP-seq//Prediction 0.6308 March9 RAID02690046 mmu-miR-10b-5p miRNA MIMAT0000208 March9 mRNA 216438 Prediction 0.1828 March9 RAID02763223 mmu-miR-379-5p miRNA MIMAT0000743 March9 mRNA 216438 Prediction 0.1828 March9 RAID02866924 mmu-miR-876-3p miRNA MIMAT0004855 March9 mRNA 216438 Prediction 0.1828 March9 RAID02959679 mmu-miR-448-3p miRNA MIMAT0001533 March9 mRNA 216438 Prediction 0.1828 March9 RAID03075749 mmu-miR-6931-5p miRNA MIMAT0027762 March9 mRNA 216438 Prediction 0.1828 March9 RAID03219021 mmu-miR-6968-5p miRNA MIMAT0027838 March9 mRNA 216438 Prediction 0.1828 March9 RAID03266826 mmu-miR-504-5p miRNA MIMAT0004889 March9 mRNA 216438 Prediction 0.1828 March9 RAID03366773 mmu-miR-7033-5p miRNA MIMAT0027970 March9 mRNA 216438 Prediction 0.1828 March9 RAID03535762 mmu-miR-5623-3p miRNA MIMAT0022374 March9 mRNA 216438 Prediction 0.1828 March9 RAID03536051 mmu-miR-3085-3p miRNA MIMAT0014879 March9 mRNA 216438 Prediction 0.1828 March9 RAID03591082 mmu-miR-124-3p miRNA MIMAT0000134 March9 mRNA 216438 Microarray 0.5483 March9 RAID03605769 mmu-miR-143-3p miRNA MIMAT0000247 March9 mRNA 216438 Prediction 0.1828 March9 RAID03749287 mmu-miR-466l-3p miRNA MIMAT0005830 March9 mRNA 216438 Prediction 0.1828 March9 RAID03777151 mmu-miR-503-5p miRNA MIMAT0003188 March9 mRNA 216438 Prediction 0.1828 March9 RAID03808398 mmu-miR-5621-5p miRNA MIMAT0022369 March9 mRNA 216438 Prediction 0.1828 March9 RAID04006085 mmu-miR-204-5p miRNA MIMAT0000237 March9 mRNA 216438 Prediction 0.1828