DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT010324 mmu-miR-340-5p Mus musculus Ppp1r13l 333654 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000154 mmu-miR-142-5p 333654 Ppp1r13l ucaucacgaaagauGAAAUAc |||||| augggaaacauuucCUUUAUa 2 8 488 508 [mm9:7:19963842-19963862:+] 0.5964 120 6 -9.27 -0.3125 MIMAT0004616 mmu-miR-30c-1* 333654 Ppp1r13l ccucauuuguuGGGAGAGGGUc |:|||||||| guccuuuccucCUCUCUCCCAg 2 12 351 372 [mm9:7:19963705-19963726:+] 0.5378 151 7 -22.79 -0.2163 MIMAT0005438 mmu-miR-30c-2* 333654 Ppp1r13l ucucauuugucGGA-AGAGGGUc ||| ||||||| aguccuuuccuCCUCUCUCCCAg 2 12 350 372 [mm9:7:19963704-19963726:+] 0.5378 146 7 -20.32 -0.2163 MIMAT0004647 mmu-miR-338-5p 333654 Ppp1r13l gugAGUCGUG-GUCCUA-UAACAa | :|||: ||||| ||||| ---UAGGCAUGAAGGAUGAUUGUa 2 20 1 21 [mm9:7:19963355-19963375:+] 0.5200 126 0 -15.11 -0.6286 MIMAT0000650 mmu-miR-17* 333654 Ppp1r13l gauGUUCACGG-GAGUGA-CGUCa :||||||| | :||| |||| uuuUAAGUGCCUCCUACUGGCAGc 2 20 267 290 [mm9:7:19963621-19963644:+] 0.5378 134 0 -23.09 -0.1699 MIMAT0004666 mmu-miR-33* 333654 Ppp1r13l cacUACGUG-ACACCUUUGUAAc ||| || || ||||||||| auaAUG-ACAUG-GGAAACAUUu 2 20 480 500 [mm9:7:19963834-19963854:+] 0.5964 158 7 -15.36 -0.4759 MIMAT0004788 mmu-miR-20b* 333654 Ppp1r13l gaucUUCAC-GAGUGUGA-CGUCa ||||| ||| :||| |||| uuuuAAGUGCCUCCUACUGGCAGc 2 19 267 290 [mm9:7:19963621-19963644:+] 0.5378 133 0 -19.52 -0.1683 MIMAT0004789 mmu-miR-450a-3p 333654 Ppp1r13l uacuuacguuucGUAGGGGUUa ::||||||| gugaggaccccaUGUCCCCAAc 2 11 426 447 [mm9:7:19963780-19963801:+] 0.5349 142 7 -15.50 -0.2529 MIMAT0003892 mmu-miR-762 333654 Ppp1r13l cgagacagggccggGGUCGGGg ||||||| gagaaaaguacaagCCAGCCCg 2 9 25 46 [mm9:7:19963379-19963400:+] 0.5200 140 7 -15.36 -0.2370 MIMAT0014815 mmu-miR-3099* 333654 Ppp1r13l guucCCGAC--CU--UCCUUCGACc | ||| || ||||||||| cccaGACUGAAGAUUAGGAAGCUGc 2 18 150 174 [mm9:7:19963504-19963528:+] 0.5837 151 7 -17.57 -0.1831 MIMAT0003472 mmu-miR-693-5p 333654 Ppp1r13l cuuuugaaagccUACACCGAc |||||||| ugccuucauaccAUGUGGCUu 2 10 452 472 [mm9:7:19963806-19963826:+] 0.5964 145 7 -11.26 -1.0717 MIMAT0003502 mmu-miR-712 333654 Ppp1r13l ccauggcgggcccACUUCCUc ||||||| -------uaggcaUGAAGGAu 2 9 1 14 [mm9:7:19963355-19963368:+] 0.5200 140 7 -11.96 -0.1479 MIMAT0004837 mmu-miR-615-5p 333654 Ppp1r13l cuaggcucgugGCCCCUGGGGg :| ||||||| uagggccugugUGAGGACCCCa 2 12 416 437 [mm9:7:19963770-19963791:+] 0.5349 143 7 -23.72 -0.8786 MIMAT0004237 mmu-miR-742 333654 Ppp1r13l aaAUGGGUCGUACCACCGAAag | | :| ||| ||||||| ccUUCAUACCAU-GUGGCUUaa 3 21 454 474 [mm9:7:19963808-19963828:+] 0.5964 138 0 -13.02 -0.1335 MIMAT0004845 mmu-miR-881* 333654 Ppp1r13l ucuacacugacaAUAGAGAGAc | ||||||| cccaccccuucaUUUCUCUCUg 2 11 328 349 [mm9:7:19963682-19963703:+] 0.5378 142 7 -13.18 -0.4774 MIMAT0004848 mmu-miR-883a-5p 333654 Ppp1r13l caUUGACGAUGAAGA-GAGUCGu || | | |||| |||||| agAAGUCCCCAUUCUGCUCAGCa 2 21 371 393 [mm9:7:19963725-19963747:+] 0.5056 124 6 -15.20 -0.2802 MIMAT0007870 mmu-miR-1900 333654 Ppp1r13l acUUCCUGG-UCUCUCCCGCCGg :||| :| ||:||||||||| gaGAGGCUCAAGGGAGGGCGGCc 2 21 128 150 [mm9:7:19963482-19963504:+] 0.5837 171 7 -37.24 -0.1346 MIMAT0009405 mmu-miR-1941-5p 333654 Ppp1r13l uucGGAGACAU-GGUCGUAGAGGGa || :|| | || ||||||| ggaCCCUUGCAGGCAAGAUCUCCCa 2 22 203 227 [mm9:7:19963557-19963581:+] 0.5321 152 7 -20.26 -0.1589 MIMAT0009431 mmu-miR-1958 333654 Ppp1r13l ugaauGACGAAGGUGAAAGGAu ||| || ||||||| ucucuCUGAGUC--CUUUCCUc 2 18 342 361 [mm9:7:19963696-19963715:+] 0.5378 146 7 -17.26 -0.1962 MIMAT0009439 mmu-miR-1966 333654 Ppp1r13l cugagagaggacucGGUCGAGGGAa :| ||||||| ggcaccggaaauucUCUGCUCCCUg 2 12 104 128 [mm9:7:19963458-19963482:+] 0.5518 143 7 -18.99 -0.2869 MIMAT0009446 mmu-miR-1971 333654 Ppp1r13l agagucgggucGGAAAUg |||||| gggaaacauuuCCUUUAu 2 8 490 507 [mm9:7:19963844-19963861:+] 0.5964 120 6 -7.18 -0.1381 MIMAT0009458 mmu-miR-1981 333654 Ppp1r13l cggugcagauucgggucGGAAAUg |||||| ugacaugggaaacauuuCCUUUAu 2 8 484 507 [mm9:7:19963838-19963861:+] 0.5964 120 6 -12.14 -0.1367 MIMAT0009460 mmu-miR-1982.1 333654 Ppp1r13l gacacccucUUGU-AUCCCACUCu |:|| |:||||||| gcugccuuaAGCAUUGGGGUGAGg 2 15 170 193 [mm9:7:19963524-19963547:+] 0.5837 153 7 -23.58 -0.2723 MIMAT0014853 mmu-miR-3072 333654 Ppp1r13l ucUUCCGAAGGACCUCCC-CCGu :||||| |||||| ||| gaGAGGCUCAAGGGAGGGCGGCc 2 21 128 150 [mm9:7:19963482-19963504:+] 0.5837 128 0 -27.94 -0.1371 MIMAT0015645 mmu-miR-3473 333654 Ppp1r13l ccgacucGGUAGAGAGGu :| ||||||| ccuuuccUCCUCUCUCCc 2 12 353 370 [mm9:7:19963707-19963724:+] 0.5378 143 7 -14.48 -0.2114 MIMAT0000128 mmu-miR-30a 333654 Ppp1r13l gaaggUCAGCUCCUACAAAUGu | | ||| ||||||| uuauaAAUAAAGGUUGUUUACc 2 18 504 525 [mm9:7:19963858-19963879:+] 0.5964 153 7 -10.60 -0.4132 MIMAT0000130 mmu-miR-30b 333654 Ppp1r13l ucgACUCACAUCCUACAAAUGu | | | ||| ||||||| uuaUAAAUAAAGGUUGUUUACc 2 20 504 525 [mm9:7:19963858-19963879:+] 0.5964 155 7 -10.90 -0.4132 MIMAT0000134 mmu-miR-124 333654 Ppp1r13l ccguaagUGGCGCACGGAAu ||| ||||||| guccccaACCAAGUGCCUUc 2 14 439 458 [mm9:7:19963793-19963812:+] 0.5964 149 7 -15.31 -0.7100 MIMAT0000159 mmu-miR-149 333654 Ppp1r13l cccucacuucugUGCCUCGGUCu :| ||||||| ugcacuauccuaGCUGAGCCAGg 2 12 298 320 [mm9:7:19963652-19963674:+] 0.5378 143 7 -15.66 -0.1523 MIMAT0000214 mmu-miR-185 333654 Ppp1r13l agUCCUUGACGGA-AAGAGAGGu || :| ||| ||||||| ugAGUCCUUUCCUCCUCUCUCCc 2 21 348 370 [mm9:7:19963702-19963724:+] 0.5378 147 7 -15.30 -0.2095 MIMAT0000219 mmu-miR-24 333654 Ppp1r13l gacaaggACGACUUGACUCGGu | || |:||||||| ugcacuaUCCU-AGCUGAGCCa 2 16 298 318 [mm9:7:19963652-19963672:+] 0.5378 149 7 -21.60 -0.4585 MIMAT0000237 mmu-miR-204 333654 Ppp1r13l ucCGUA--UCCUACU---GUUUCC-CUu |||| ||||||| :||||| || agGCAUGAAGGAUGAUUGUAAAGGAGAa 2 21 2 29 [mm9:7:19963356-19963383:+] 0.5200 130 0 -26.75 -0.4107 MIMAT0000238 mmu-miR-205 333654 Ppp1r13l gucugaggccaCCUUACUUCCu || ||||||| ---------uaGGCAUGAAGGa 2 12 1 13 [mm9:7:19963355-19963367:+] 0.5200 147 7 -14.92 -0.6594 MIMAT0000248 mmu-miR-30e 333654 Ppp1r13l gaaggUCAGUUCCUACAAAUGu | | |||| ||||||| uuauaAAUAAAGGUUGUUUACc 2 18 504 525 [mm9:7:19963858-19963879:+] 0.5964 161 7 -11.83 -0.4069 MIMAT0000514 mmu-miR-30c 333654 Ppp1r13l cgacucUCACAUCCUACAAAUGu | | ||| ||||||| uuuauaAAUAAAGGUUGUUUACc 2 18 503 525 [mm9:7:19963857-19963879:+] 0.5964 153 7 -10.90 -0.4132 MIMAT0000515 mmu-miR-30d 333654 Ppp1r13l gaaggucagccCCUACAAAUGu || ||||||| uuauaaauaaaGGUUGUUUACc 2 12 504 525 [mm9:7:19963858-19963879:+] 0.5964 147 7 -9.37 -0.4163 MIMAT0004651 mmu-miR-340-5p 333654 Ppp1r13l uuagucagaGU-AACGAAAUAUu || || ||||||| caugggaaaCAUUUCCUUUAUAa 2 14 487 509 [mm9:7:19963841-19963863:+] 0.5964 148 7 -9.12 -1.1356 MIMAT0004651 mmu-miR-340-5p 333654 Ppp1r13l uuagucagaguaacgAAAUAUu |||||| ccauguggcuuaaugUUUAUAa 2 8 462 483 [mm9:7:19963816-19963837:+] 0.5964 120 6 -8.43 -0.1103 MIMAT0000590 mmu-miR-342-3p 333654 Ppp1r13l ugcccacgcuaaaGACACACUCu ||||||||| agaagcuuagggcCUGUGUGAGg 2 11 409 431 [mm9:7:19963763-19963785:+] 0.4735 150 7 -19.80 -0.1088 MIMAT0000662 mmu-miR-216a 333654 Ppp1r13l agugucaacGGUC-GAC-UCUAAu |||| ||| ||||| agggcggccCCAGACUGAAGAUUa 2 14 142 165 [mm9:7:19963496-19963519:+] 0.5837 120 0 -19.30 -0.2280 MIMAT0000668 mmu-miR-211 333654 Ppp1r13l uccGUUUCCUACU---GUUUCC-CUu ::|||||||| :||||| || gcaUGAAGGAUGAUUGUAAAGGAGAa 2 20 4 29 [mm9:7:19963358-19963383:+] 0.5200 130 0 -20.91 -0.4107 MIMAT0004745 mmu-miR-384-5p 333654 Ppp1r13l uguaacggAUCCUUAACAAAUGu || ::|||||||| uuuauaaaUAAAGGUUGUUUACc 2 16 503 525 [mm9:7:19963857-19963879:+] 0.5964 151 7 -9.77 -0.4100 MIMAT0003169 mmu-miR-539 333654 Ppp1r13l ugugugguuccuAUUAAAGAGg | ||||||| cuacccaccccuUCAUUUCUCu 2 11 325 346 [mm9:7:19963679-19963700:+] 0.5378 142 7 -13.03 -0.1499 MIMAT0004828 mmu-miR-708 333654 Ppp1r13l ggGUC-GA--UCUAA-CAUUCGA-GGAa ||| || ||||| | ||||| ||| ccCAGACUGAAGAUUAGGAAGCUGCCUu 2 22 150 177 [mm9:7:19963504-19963531:+] 0.5837 130 0 -23.99 -0.3356 MIMAT0004847 mmu-miR-882 333654 Ppp1r13l ugauuacgcgauuGAGAGAGGa |||||||| gaguccuuuccucCUCUCUCCc 2 10 349 370 [mm9:7:19963703-19963724:+] 0.5378 145 7 -14.97 -0.2095

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G071927 Ppp1r13l Mus musculus 333654 19536157 0 0 R53276; MOUSE$PPP1R13L_01; Binding factors: mmu-miR-124-3p // 0 0 R53289; MOUSE$PPP1R13L_02; Binding factors: mmu-miR-181a-5p , mmu-miR-181b-5p , mmu-miR-181c-3p , mmu-miR-181d-5p , mmu-miR-543-3p // 0 0 R53321; MOUSE$PPP1R13L_03; Binding factors: mmu-miR-30a-5p , mmu-miR-30b-5p , mmu-miR-30c-5p , mmu-miR-30d-5p , mmu-miR-30e-5p , mmu-miR-384-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ppp1r13l mmu-miR-2145 beg:216 end:234 pic:3' TTGGTCCGGGCTGGGACGA 5'& .|.| ||| ||||||| &5' GATCT--CCC-ACCCTGC- 3' Ppp1r13l mmu-miR-24 beg:302 end:319 pic:3' GACAAGGACGACTTGACTCGGT 5'& |||| |.|||||||| &5' ----TCCT----AGCTGAGCCA 3' Ppp1r13l mmu-miR-186star beg:403 end:422 pic:3' GGGTTTTTTAAGTGGAATCCCG 5'& ||||.||. |||||||| &5' CCCAGAAG------CTTAGGGC 3' Ppp1r13l mmu-miR-540-5p beg:192 end:211 pic:3' TGTCTCAGTCTCCCACTGGGAAC 5'& . |.| | ||| |||||||| &5' GTGGGG-CT--GGG-GACCCTTG 3' Ppp1r13l mmu-miR-149 beg:307 end:320 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& .| |||||||. &5' ------------GCTGAGCCAGG 3' Ppp1r13l mcmv-miR-M23-2 beg:224 end:239 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& ||| ||||||| &5' -------ACCCT-GCCCCCA- 3' Ppp1r13l mcmv-miR-M23-2 beg:383 end:402 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& |.||| .| |||||||| &5' CTGCTCAGCA---GCCCCCAT 3' Ppp1r13l mmu-miR-1900 beg:135 end:151 pic:3' ACTTCCTGGTCTCTCCCGCCGG 5'& ||.|||||||||| &5' ---------AGGGAGGGCGGCC 3' Ppp1r13l mmu-miR-1982.1 beg:176 end:193 pic:3' GACACCCTCTTGT-ATCCCACTCT 5'& |.|| |.|||||||. &5' ---------AGCATTGGGGTGAGG 3' Ppp1r13l mmu-miR-342-3p beg:415 end:430 pic:3' TGCCCACGCTAAAGACACACTCT 5'& || || ||||||||| &5' ---GG-GC-----CTGTGTGAG- 3' Ppp1r13l mmu-miR-101astar beg:296 end:315 pic:3' CGTAGTCGTGACACTATTGACT 5'& ||||| ||.|||| &5' ------GCACTATCCTAGCTGA 3' Ppp1r13l mmu-miR-1224 beg:395 end:418 pic:3' GAGGT-GGAGGGGTCAG-GAGTG 5'& ||| .||.||||| ||.| &5' --CCATTCTTCCCAGAAGCTTA- 3' Ppp1r13l mmu-miR-125a-3p beg:118 end:142 pic:3' CCGAGGG-TTCTTGGAGTGGACA 5'& |||||| .|||. |||| | &5' -GCTCCCTGAGAGGCTCAAGGG- 3' Ppp1r13l mmu-miR-1274a beg:42 end:64 pic:3' ACCGCGGACT-TGTCCCTGGACT 5'& ||||| || ||||||| &5' ---CGCCTTCCACCCGGACCTG- 3' Ppp1r13l mmu-miR-129-5p beg:142 end:163 pic:3' CGTTCGGGTCTGGCGTTTTTC 5'& ||.. |||||||.| ||.| &5' GCGGCCCCAGACTG-AAGA-- 3' Ppp1r13l mmu-miR-143 beg:321 end:344 pic:3' CTCGATGTCAC--GAAGTAGAGT 5'& .||||| ||||||.|| &5' -GGCTACCCACCCCTTCATTTC- 3' Ppp1r13l mmu-miR-145star beg:305 end:323 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& .|| |||||.| &5' ------TAGCTGAGCCAGGGA- 3' Ppp1r13l mmu-miR-146bstar beg:404 end:422 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& |||||| |.|||||| &5' -CCAGAAG------CTTAGGGC 3' Ppp1r13l mmu-miR-1894-3p beg:349 end:371 pic:3' GAGGGAAGT-GG-GAGAGGGAACG 5'& |||.||| || ||||||| &5' -TCCTTTCCTCCTCTCTCCC---- 3' Ppp1r13l mmu-miR-1935 beg:105 end:123 pic:3' TCTCTAGGCGGTC----GGAGACGGA 5'& | ||.| .||||||. &5' -------CACCGGAAATTCTCTGCT- 3' Ppp1r13l mmu-miR-1938 beg:212 end:230 pic:3' CTGGCTTGATGTTC---AGGGTGGC 5'& .|||| ||||||| &5' ---------GCAAGATCTCCCACC- 3' Ppp1r13l mmu-miR-1953 beg:343 end:361 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& .||||| ||||||. &5' ------TCTGAGTCCTTTCCT- 3' Ppp1r13l mmu-miR-196b beg:161 end:177 pic:3' GGGTTGTTGTCCTTTGATGGAT 5'& .|||||.||.||| &5' --------TAGGAAGCTGCCT- 3' Ppp1r13l mmu-miR-1982.2 beg:176 end:192 pic:3' GACACCCTCTTGT-ATCCCACT 5'& |.|| |.|||||| &5' ---------AGCATTGGGGTGA 3' Ppp1r13l mmu-miR-1982star beg:393 end:411 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& ||||| .|.|||||. &5' ---CCCCAT--TCTTCCCAG 3' Ppp1r13l mmu-miR-1982star beg:350 end:373 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& ||| || |.||||||. &5' CCTTTCCTCCTCTCTCCCAG 3' Ppp1r13l mmu-miR-202-5p beg:480 end:495 pic:3' TTTCTTCATATAC-GTATCCTT 5'& ||| |||.|||| &5' ----------ATGACATGGGAA 3' Ppp1r13l mmu-miR-207 beg:135 end:162 pic:3' CTCCCTCCTCTCGG--TCCT-CTTCG 5'& |||||||. .||| || |||| &5' -AGGGAGGGCGGCCCCAGACTGAAG- 3' Ppp1r13l mmu-miR-2140 beg:284 end:304 pic:3' TGGTGGTTCTA-GACGTGGA 5'& || |||| ||||||. &5' --CAGCAAGCCACTGCACT- 3' Ppp1r13l mmu-miR-2140 beg:70 end:90 pic:3' TGGTGGTTCTAGACGTGGA 5'& .|.| | ||||||.|| &5' GCTAGCTA-ATCTGCGCC- 3' Ppp1r13l mmu-miR-218 beg:21 end:38 pic:3' TGTACCAATCTAGTTCGTGTT 5'& || ||| |||.|||| &5' ----GG--AGAA-AAGTACAA 3' Ppp1r13l mmu-miR-221 beg:450 end:472 pic:3' CTTTGGGTCGTCTGTTACATCGA 5'& .||. || || ||||.||| &5' ---GCCTT-CATACCATGTGGCT 3' Ppp1r13l mmu-miR-24 beg:337 end:354 pic:3' GACAAGGACGACTTGACTCGGT 5'& ||.|| || |||||.| &5' ---TTTCT-CT---CTGAGTC- 3' Ppp1r13l mmu-miR-28star beg:250 end:268 pic:3' AGGTC-GTCGAGTGTTAGATCAC 5'& |||| ||| ||||.|| &5' -CCAGTCAG------ATCTGGT- 3' Ppp1r13l mmu-miR-298 beg:106 end:123 pic:3' CCCTTCTTGTCGGGAGGAGACGG 5'& |.| |.||||||. &5' --------CGGAAATTCTCTGCT 3' Ppp1r13l mmu-miR-29bstar beg:26 end:44 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& ||| .|| ||.||||| &5' -AAAGTAC------AAGCCAGC 3' Ppp1r13l mmu-miR-3099 beg:329 end:354 pic:3' AGGGGT--TGGAGAGAGA-TCGGAT 5'& |||| |..||||||| ||.| &5' -CCCCTTCATTTCTCTCTGAGTC-- 3' Ppp1r13l mmu-miR-3099star beg:153 end:174 pic:3' GTTCCCGAC--CT--TCCTTCGACC 5'& ||| || ||||||||| &5' ------CTGAAGATTAGGAAGCTG- 3' Ppp1r13l mmu-miR-30a beg:511 end:525 pic:3' GAAGGTCAGCTCCTACAAATGT 5'& ||| ||||||| &5' ----------AGGTTGTTTAC- 3' Ppp1r13l mmu-miR-30a beg:459 end:483 pic:3' GAAGGT-CAGCTCC-TACAAATGT 5'& ||| || | |||||||.| &5' ---CCATGTGGCTTAATGTTTATA 3' Ppp1r13l mmu-miR-30astar beg:142 end:162 pic:3' CGACGTTTGTAGG-CTGACTTTC 5'& || ..| || |||||||. &5' ---GC-GGCC-CCAGACTGAAG- 3' Ppp1r13l mmu-miR-30b beg:511 end:525 pic:3' TCGACTCACATCCTACAAATGT 5'& ||| ||||||| &5' ----------AGGTTGTTTAC- 3' Ppp1r13l mmu-miR-30b beg:462 end:483 pic:3' TCGACTCACATCC---TACAAATGT 5'& |||.| |||||||.| &5' -------TGTGGCTTAATGTTTATA 3' Ppp1r13l mmu-miR-30c beg:462 end:483 pic:3' CGACTCTCACATCC---TACAAATGT 5'& |||.| |||||||.| &5' --------TGTGGCTTAATGTTTATA 3' Ppp1r13l mmu-miR-30c beg:511 end:525 pic:3' CGACTCTCACATCCTACAAATGT 5'& ||| ||||||| &5' -----------AGGTTGTTTAC- 3' Ppp1r13l mmu-miR-30c-1star beg:210 end:228 pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& |..||| ||||||| &5' -----AGGCAAGA-TCTCCCA- 3' Ppp1r13l mmu-miR-30c-1star beg:346 end:373 pic:3' CCTCATTT--GTTGG-GAGAGGGTC 5'& |||| | || ||||||||| &5' -GAGTCCTTTCCTCCTCTCTCCCAG 3' Ppp1r13l mmu-miR-30c-2star beg:208 end:228 pic:3' TCTCATTTGTCGGA---AGAGGGTC 5'& .||| | ||||||| &5' -------GCAGGCAAGATCTCCCA- 3' Ppp1r13l mmu-miR-30c-2star beg:346 end:373 pic:3' TCTCATTT--GTCGGA-AGAGGGTC 5'& |||| | ||| |||||||| &5' -GAGTCCTTTCCTCCTCTCTCCCAG 3' Ppp1r13l mmu-miR-30e beg:510 end:525 pic:3' GAAGGTCAGTTCCTACAAATGT 5'& |||| ||||||| &5' ---------AAGGTTGTTTAC- 3' Ppp1r13l mmu-miR-30e beg:459 end:483 pic:3' GAAGGT-CAGTTCC-TACAAATGT 5'& ||| || . |||||||.| &5' ---CCATGTGGCTTAATGTTTATA 3' Ppp1r13l mmu-miR-30estar beg:151 end:162 pic:3' CGACATTTGTAGGCTGACTTTC 5'& |||||||. &5' -------------GACTGAAG- 3' Ppp1r13l mmu-miR-33star beg:480 end:500 pic:3' CACTAC-GTGACACCTTTGTAAC 5'& ||| ||. ||||||||| &5' ---ATGACATG--GGAAACATT- 3' Ppp1r13l mmu-miR-340-3p beg:1 end:27 pic:3' CGATATTTC--ATTGACTCTGCCT 5'& || ||.||| |.|.|| ||| &5' GC-ATGAAGGATGATTGTAAAGGA 3' Ppp1r13l mmu-miR-345-5p beg:175 end:200 pic:3' TTCGTGACCTGA-TCC-CCAGTCG 5'& |||||.|||. | ||| || .|| &5' AAGCATTGGGGTGAGGTGG--GGC 3' Ppp1r13l mmu-miR-346 beg:198 end:218 pic:3' TCTCCGTCCGTGAGCCCGTCTGT 5'& .|| || | ||||.|| &5' ------GGGGACCCTTGCAGGCA 3' Ppp1r13l mmu-miR-3473 beg:80 end:101 pic:3' CCGACTCGGTA--GAGAGGT 5'& ||| |||. ||||||| &5' --CTGCGCCGCTGCTCTCCA 3' Ppp1r13l mmu-miR-3473 beg:344 end:370 pic:3' CCGACTCGGT--------AGAGAGGT 5'& |||||.| ||||||| &5' --CTGAGTCCTTTCCTCCTCTCTCC- 3' Ppp1r13l mmu-miR-3475 beg:84 end:103 pic:3' AAGTTTGGTACACG-GAGGTCT 5'& .||. ||| ||||||| &5' -----GCCGC-TGCTCTCCAGA 3' Ppp1r13l mmu-miR-377 beg:410 end:430 pic:3' TGTTTTCAACGGAAACACACTA 5'& .| |.| ||| ||||||| &5' GCTTAGG--GCC--TGTGTGA- 3' Ppp1r13l mmu-miR-450b-5p beg:7 end:24 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& |||| |.||.|||. &5' -----AGGATG--ATTGTAAAG 3' Ppp1r13l mmu-miR-539 beg:324 end:347 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& || |||| |||||||. &5' ACCCACCCCTTC--ATTTCTCT 3' Ppp1r13l mmu-miR-541 beg:343 end:358 pic:3' TCACACTGGTTGTAGTCTTAGGGAA 5'& || ||.|||.|| &5' -------------TCTGAGTCCTTT 3' Ppp1r13l mmu-miR-670 beg:302 end:323 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& || |.| .| |||||| &5' -TC-CTAGCTGAGC-CAGGGA- 3' Ppp1r13l mmu-miR-688 beg:408 end:427 pic:3' CTTATTCATCAGCGGACGCT 5'& ||| ||| |||||.| &5' GAAGCT-TAGG-GCCTGTG- 3' Ppp1r13l mmu-miR-692 beg:8 end:29 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& | ||| .|. ||.|||| &5' GGATGAT-TGTA-AAGGAGA- 3' Ppp1r13l mmu-miR-693-3p beg:157 end:175 pic:3' AATGTCGGTGTAGACTTTCGACG 5'& | ||. |.||||||| &5' --------AGATTAGGAAGCTGC 3' Ppp1r13l mmu-miR-705 beg:36 end:56 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& ||| |||.|||.||||| &5' ---CCAGCCCGCCTTCCACC 3' Ppp1r13l mmu-miR-705 beg:325 end:349 pic:3' ACGGGTGGGG---TGGAGGGTGG 5'& |||||||| |..||.| |. &5' --CCCACCCCTTCATTTCTCTCT 3' Ppp1r13l mmu-miR-709 beg:349 end:370 pic:3' AGG--AGGACGGAGACGGAGG 5'& ||| |||| ||||| |||| &5' TCCTTTCCT-CCTCT--CTCC 3' Ppp1r13l mmu-miR-711 beg:332 end:356 pic:3' GAATGTAGAGAGGGGCCCAGGG 5'& ||| |||.||||.|.| ||||. &5' CTT-CATTTCTCTCTGAGTCCT 3' Ppp1r13l mmu-miR-744star beg:281 end:292 pic:3' TCCAACTCCAATCACCGTTGTC 5'& |||||.|| &5' -------------TGGCAGCA- 3' Ppp1r13l mmu-miR-876-3p beg:286 end:300 pic:3' ACTTAATGAAACATTTGGTGAT 5'& | ||.|||||. &5' -----------GCAAGCCACTG 3' Ppp1r13l mmu-miR-876-5p beg:362 end:379 pic:3' ATCACTAAGTGTCTCTTTAGGT 5'& || | ||||.||| &5' -------TCTCCCAGAAGTCC- 3' Ppp1r13l mmu-miR-877 beg:342 end:365 pic:3' GGGACGCGGTAGAGGAGATG 5'& |.||| |.| |.||||| | &5' CTCTGAGTCCTTTCCTCCTC 3' Ppp1r13l mmu-miR-877star beg:97 end:108 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& |||||.|| &5' --------------AGAGGGCA 3' Ppp1r13l mmu-miR-881star beg:339 end:350 pic:3' TCTACACTGACAATAGAGAGAC 5'& |||||||| &5' --------------TCTCTCTG 3' Ppp1r13l mmu-miR-882 beg:359 end:370 pic:3' TGATTACGCGATTGAGAGAGGA 5'& |||||||| &5' -------------CTCTCTCC- 3' Ppp1r13l mmu-miR-883a-5p beg:379 end:394 pic:3' CATTGACGATGAAGA-GAGTCGT 5'& |||| ||||||| &5' -----------TTCTGCTCAGCA 3' Ppp1r13l mmu-miR-93star beg:383 end:395 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& ||||||||| &5' ------------GCTCAGCAG- 3' Ppp1r13l mmu-miR-99bstar beg:200 end:224 pic:3' GCCTGGG--TGTCTGTGCTCGAAC 5'& |||||| .|||.|| || || &5' -GGACCCTTGCAGGCAAGATCT-- 3' Ppp1r13l mmu-miR-450a-3p beg:436 end:447 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& .||||||| &5' -------------GTCCCCAA- 3' Ppp1r13l mmu-miR-185 beg:355 end:370 pic:3' AGTCCTTGACGGAA-AGAGAGGT 5'& ||| ||||||| &5' ----------CCTCCTCTCTCC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ppp1r13l RAID00240519 mmu-miR-30c-2-3p miRNA MIMAT0005438 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID00272792 mmu-miR-7019-5p miRNA MIMAT0027942 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID00288044 mmu-miR-6989-5p miRNA MIMAT0027880 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID00318886 mmu-miR-1258-5p miRNA MIMAT0029904 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID00351513 mmu-miR-185-5p miRNA MIMAT0000214 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID00396637 mmu-miR-149-5p miRNA MIMAT0000159 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID00420814 mmu-miR-6391 miRNA MIMAT0025140 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID00459804 mmu-miR-216a-5p miRNA MIMAT0000662 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID00764595 mmu-miR-6540-5p miRNA MIMAT0025585 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID01212261 mmu-miR-340-5p miRNA MIMAT0004651 Ppp1r13l mRNA 333654 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7353 Ppp1r13l RAID01230844 mmu-miR-205-5p miRNA MIMAT0000238 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID01412188 mmu-miR-504-3p miRNA MIMAT0017277 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID01445302 mmu-miR-1231-5p miRNA MIMAT0022357 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID01607020 mmu-miR-539-5p miRNA MIMAT0003169 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID01624986 mmu-miR-384-5p miRNA MIMAT0004745 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID01632422 mmu-miR-882 miRNA MIMAT0004847 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID01756434 mmu-miR-211-5p miRNA MIMAT0000668 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID01800358 mmu-miR-124-3p miRNA MIMAT0000134 Ppp1r13l mRNA 333654 Western Blot//Reporter Assay//RT-PCR//CLIP-seq//Prediction 0.9838 Ppp1r13l RAID01888332 mmu-miR-6969-5p miRNA MIMAT0027840 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID02008638 mmu-miR-6413 miRNA MIMAT0025166 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID02179489 mmu-miR-6958-5p miRNA MIMAT0027816 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID02267549 mmu-miR-30c-5p miRNA MIMAT0000514 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID02601773 mmu-miR-30c-1-3p miRNA MIMAT0004616 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID02661355 mmu-miR-7074-5p miRNA MIMAT0028054 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID02838514 mmu-miR-7069-5p miRNA MIMAT0028044 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03016971 mmu-miR-24-3p miRNA MIMAT0000219 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03037534 mmu-miR-30e-5p miRNA MIMAT0000248 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03084356 mmu-miR-6907-5p miRNA MIMAT0027714 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03476262 mmu-miR-7090-5p miRNA MIMAT0028086 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03529922 mmu-miR-30a-5p miRNA MIMAT0000128 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03554956 mmu-miR-6905-5p miRNA MIMAT0027710 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03610806 mmu-miR-204-5p miRNA MIMAT0000237 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03674836 mmu-miR-3094-5p miRNA MIMAT0014909 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03750788 mmu-miR-708-5p miRNA MIMAT0004828 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03816441 mmu-miR-30b-5p miRNA MIMAT0000130 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03835501 mmu-miR-342-3p miRNA MIMAT0000590 Ppp1r13l mRNA 333654 Prediction 0.1828 Ppp1r13l RAID03963931 mmu-miR-30d-5p miRNA MIMAT0000515 Ppp1r13l mRNA 333654 Prediction 0.1828