DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000595 mmu-miR-345-5p 73162 Otud3 uucgugACCUGAUCCCCAGUCg || ||: ||||||| uuugugUGCCCUGUGGGUCAGa 2 17 238 259 [mm9:4:138451394-138451415:-] 0.6219 152 7 -17.89 -0.6376 MIMAT0003731 mmu-miR-671-5p 73162 Otud3 gaggucggggagGUCCCGAAGGa || ||||||| cuacgcugcagaCAAGGCUUCCc 2 12 31 53 [mm9:4:138451600-138451622:-] 0.5344 147 7 -20.78 -0.3429 MIMAT0015219 mmu-miR-3475 73162 Otud3 aagUUUGGUACACGGAGG-UCu | ||||| ||||| || gugACACCAUUCACCUCCUAGa 2 19 151 172 [mm9:4:138451481-138451502:-] 0.6056 122 0 -18.12 -0.6963 MIMAT0003487 mmu-miR-697 73162 Otud3 agaggUGUCCUGGUCCUACAa | ||| ||||||| cccugAGAGGUGAAGGAUGUa 2 17 9 29 [mm9:4:138451624-138451644:-] 0.5896 148 7 -16.26 -0.3267 MIMAT0003502 mmu-miR-712 73162 Otud3 ccauggcgggcCCACUUCCUc ||||||||| gggcccugagaGGUGAAGGAu 2 11 6 26 [mm9:4:138451627-138451647:-] 0.5896 150 7 -21.74 -0.1599 MIMAT0004863 mmu-miR-220 73162 Otud3 uucACAGACUGUGACACCACc ||| ||||: ||||||| uguUGUGUGACGGUGUGGUGa 2 19 134 154 [mm9:4:138451499-138451519:-] 0.6056 170 7 -25.14 -0.2757 MIMAT0004863 mmu-miR-220 73162 Otud3 uuCACAGACUGUGACACCACc ||| | | | ||||||| cuGUGGGUCAGAGUGUGGUGg 2 20 248 268 [mm9:4:138451385-138451405:-] 0.6219 155 7 -19.48 -0.1495 MIMAT0004888 mmu-miR-493 73162 Otud3 ggacCGUGU--GUCAUC-CUGGAAGu ||||| || ||| ||||||| cucaGCACAAUCAUUAGAGACCUUCa 2 20 325 350 [mm9:4:138451303-138451328:-] 0.6303 165 7 -23.86 -0.9694 MIMAT0005858 mmu-miR-1197 73162 Otud3 ucuUCAUCUGGUACACAGGAu || || ||| ||||||| cacAGGAG-CCA-GUGUCCUu 2 19 105 123 [mm9:4:138451530-138451548:-] 0.5779 154 7 -19.80 -0.3061 MIMAT0009392 mmu-miR-1929 73162 Otud3 gagAC-GAGAU-AUUUCAGGAUCUu || | | | | | ||||||| uggUGACACCAUUCACCUCCUAGAa 2 21 149 173 [mm9:4:138451480-138451504:-] 0.6056 142 7 -16.87 -0.5172 MIMAT0009401 mmu-miR-1937a 73162 Otud3 acccccGAGCAGGC-CCUAa ||| |||| |||| ccacacCUCCUCCGAGGAUg 2 14 56 75 [mm9:4:138451578-138451597:-] 0.5466 121 0 -15.64 -0.1169 MIMAT0009437 mmu-miR-1964 73162 Otud3 uuucgGCCUCGGGUCUUCAGCc | || :|: ||||||| uuguaCCGAUUCUUGAAGUCGc 2 18 304 325 [mm9:4:138451328-138451349:-] 0.6303 153 7 -18.57 -0.5383 MIMAT0009444 mmu-miR-1970 73162 Otud3 guuucggauagggGUCACUGUGu ::||||||| uugugugacggugUGGUGACACc 2 11 136 158 [mm9:4:138451495-138451517:-] 0.6056 142 7 -11.40 -0.3158 MIMAT0011217 mmu-miR-2141 73162 Otud3 uuGAAAAGAC--UGUGGAGGa ||| | | |||||||| ggCUUCCCAGCCACACCUCCu 2 18 46 66 [mm9:4:138451587-138451607:-] 0.5344 148 7 -19.18 -0.1483 MIMAT0011217 mmu-miR-2141 73162 Otud3 uugaaaagacuGUGGAGGa ||||||| gugacaccauuCACCUCCu 2 9 151 169 [mm9:4:138451484-138451502:-] 0.6056 140 7 -15.17 -0.8972 MIMAT0014853 mmu-miR-3072 73162 Otud3 ucuUCCGA--AGGACCUC-CCCCGu ||||| || ||| ||||| cauAGGCUGGUCACAGAGCGGGGCc 2 20 189 213 [mm9:4:138451440-138451464:-] 0.5511 122 0 -23.18 -0.1909 MIMAT0015641 mmu-miR-3470b 73162 Otud3 ggucGGAC-CAGAUGUCUCACu |||| | | ||||||| gugcCCUGUGGGU-CAGAGUGu 2 18 243 263 [mm9:4:138451390-138451410:-] 0.6219 146 7 -19.52 -0.2495 MIMAT0000159 mmu-miR-149 73162 Otud3 cccUCACUUCUGUG-CCUCGGUCu || ||: ||| |||||||| cacAG-GAGCCCACAGGAGCCAGu 2 21 95 117 [mm9:4:138451536-138451558:-] 0.5779 157 7 -26.12 -0.2161 MIMAT0000219 mmu-miR-24 73162 Otud3 gacaaggacgacuUGACUCGGu |||||||| uagaacucaaaacACUGAGCCa 2 10 169 190 [mm9:4:138451463-138451484:-] 0.6056 145 7 -16.12 -0.9114 MIMAT0000663 mmu-miR-218 73162 Otud3 uguaccaaucuaguUCGUGUu |||||| ucuugaagucgcucAGCACAa 2 8 314 334 [mm9:4:138451319-138451339:-] 0.6303 120 6 -11.19 -0.1171 MIMAT0000741 mmu-miR-377 73162 Otud3 uguuUUCAACGGA--AACACACUa ||| ||::| |||||||| cuucAAGCUGUUUUGUUGUGUGAc 2 19 121 144 [mm9:4:138451509-138451532:-] 0.6236 161 7 -14.53 -0.5279 MIMAT0003184 mmu-miR-487b 73162 Otud3 uuCACCUACUGGGACAU-GCUAa ||||:| ||:|||| |||| ggGUGGGU-UCCUUGUACCGAUu 2 21 293 314 [mm9:4:138451339-138451360:-] 0.6303 134 0 -26.31 -0.3498

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G062325 Otud3 Mus musculus 73162

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Otud3 RAID00230265 mmu-miR-218-5p miRNA MIMAT0000663 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID00386529 mmu-miR-93-5p miRNA MIMAT0000540 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID00646738 mmu-miR-92b-3p miRNA MIMAT0004899 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID00765799 mmu-miR-377-3p miRNA MIMAT0000741 Otud3 mRNA 73162 Prediction 0.2202 Otud3 RAID00818110 mmu-miR-5622-5p miRNA MIMAT0022371 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID01024507 mmu-miR-149-5p miRNA MIMAT0000159 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID01238032 mmu-miR-24-3p miRNA MIMAT0000219 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID01704513 mmu-miR-101a-3p miRNA MIMAT0000133 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID01838256 mmu-miR-142a-5p miRNA MIMAT0000154 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID01873911 mmu-miR-3620-5p miRNA MIMAT0029878 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID02292970 mmu-miR-144-3p miRNA MIMAT0000156 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID02552381 mmu-miR-721 miRNA MIMAT0003515 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID02582239 mmu-miR-7000-3p miRNA MIMAT0027903 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID02655904 mmu-miR-101b-3p miRNA MIMAT0000616 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID02672727 mmu-miR-134-3p miRNA MIMAT0016985 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID02793030 mmu-miR-6540-5p miRNA MIMAT0025585 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID02909527 mmu-miR-7578 miRNA MIMAT0029578 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID03122969 mmu-miR-124-3p miRNA MIMAT0000134 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID03215664 mmu-miR-539-3p miRNA MIMAT0017208 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID03552186 mmu-miR-487b-3p miRNA MIMAT0003184 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID03593896 mmu-miR-21a-5p miRNA MIMAT0000530 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID03996870 mmu-miR-325-3p miRNA MIMAT0004640 Otud3 mRNA 73162 Prediction 0.1828 Otud3 RAID04732497 G730013B05Rik lncRNA 619312 Otud3 protein 73162 Microarray//RNA-seq 0.6606