Otud3
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0000595mmu-miR-345-5p73162Otud3uucgugACCUGAUCCCCAGUCg || ||: ||||||| uuugugUGCCCUGUGGGUCAGa217238259[mm9:4:138451394-138451415:-]0.62191527-17.89-0.6376
MIMAT0003731mmu-miR-671-5p73162Otud3gaggucggggagGUCCCGAAGGa || ||||||| cuacgcugcagaCAAGGCUUCCc2123153[mm9:4:138451600-138451622:-]0.53441477-20.78-0.3429
MIMAT0015219mmu-miR-347573162Otud3aagUUUGGUACACGGAGG-UCu | ||||| ||||| || gugACACCAUUCACCUCCUAGa219151172[mm9:4:138451481-138451502:-]0.60561220-18.12-0.6963
MIMAT0003487mmu-miR-69773162Otud3agaggUGUCCUGGUCCUACAa | ||| ||||||| cccugAGAGGUGAAGGAUGUa217929[mm9:4:138451624-138451644:-]0.58961487-16.26-0.3267
MIMAT0003502mmu-miR-71273162Otud3ccauggcgggcCCACUUCCUc ||||||||| gggcccugagaGGUGAAGGAu211626[mm9:4:138451627-138451647:-]0.58961507-21.74-0.1599
MIMAT0004863mmu-miR-22073162Otud3uucACAGACUGUGACACCACc ||| ||||: ||||||| uguUGUGUGACGGUGUGGUGa219134154[mm9:4:138451499-138451519:-]0.60561707-25.14-0.2757
MIMAT0004863mmu-miR-22073162Otud3uuCACAGACUGUGACACCACc ||| | | | ||||||| cuGUGGGUCAGAGUGUGGUGg220248268[mm9:4:138451385-138451405:-]0.62191557-19.48-0.1495
MIMAT0004888mmu-miR-49373162Otud3ggacCGUGU--GUCAUC-CUGGAAGu ||||| || ||| ||||||| cucaGCACAAUCAUUAGAGACCUUCa220325350[mm9:4:138451303-138451328:-]0.63031657-23.86-0.9694
MIMAT0005858mmu-miR-119773162Otud3ucuUCAUCUGGUACACAGGAu || || ||| ||||||| cacAGGAG-CCA-GUGUCCUu219105123[mm9:4:138451530-138451548:-]0.57791547-19.80-0.3061
MIMAT0009392mmu-miR-192973162Otud3gagAC-GAGAU-AUUUCAGGAUCUu || | | | | | ||||||| uggUGACACCAUUCACCUCCUAGAa221149173[mm9:4:138451480-138451504:-]0.60561427-16.87-0.5172
MIMAT0009401mmu-miR-1937a73162Otud3acccccGAGCAGGC-CCUAa ||| |||| |||| ccacacCUCCUCCGAGGAUg2145675[mm9:4:138451578-138451597:-]0.54661210-15.64-0.1169
MIMAT0009437mmu-miR-196473162Otud3uuucgGCCUCGGGUCUUCAGCc | || :|: ||||||| uuguaCCGAUUCUUGAAGUCGc218304325[mm9:4:138451328-138451349:-]0.63031537-18.57-0.5383
MIMAT0009444mmu-miR-197073162Otud3guuucggauagggGUCACUGUGu ::||||||| uugugugacggugUGGUGACACc211136158[mm9:4:138451495-138451517:-]0.60561427-11.40-0.3158
MIMAT0011217mmu-miR-214173162Otud3uuGAAAAGAC--UGUGGAGGa ||| | | |||||||| ggCUUCCCAGCCACACCUCCu2184666[mm9:4:138451587-138451607:-]0.53441487-19.18-0.1483
MIMAT0011217mmu-miR-214173162Otud3uugaaaagacuGUGGAGGa ||||||| gugacaccauuCACCUCCu29151169[mm9:4:138451484-138451502:-]0.60561407-15.17-0.8972
MIMAT0014853mmu-miR-307273162Otud3ucuUCCGA--AGGACCUC-CCCCGu ||||| || ||| ||||| cauAGGCUGGUCACAGAGCGGGGCc220189213[mm9:4:138451440-138451464:-]0.55111220-23.18-0.1909
MIMAT0015641mmu-miR-3470b73162Otud3ggucGGAC-CAGAUGUCUCACu |||| | | ||||||| gugcCCUGUGGGU-CAGAGUGu218243263[mm9:4:138451390-138451410:-]0.62191467-19.52-0.2495
MIMAT0000159mmu-miR-14973162Otud3cccUCACUUCUGUG-CCUCGGUCu || ||: ||| |||||||| cacAG-GAGCCCACAGGAGCCAGu22195117[mm9:4:138451536-138451558:-]0.57791577-26.12-0.2161
MIMAT0000219mmu-miR-2473162Otud3gacaaggacgacuUGACUCGGu |||||||| uagaacucaaaacACUGAGCCa210169190[mm9:4:138451463-138451484:-]0.60561457-16.12-0.9114
MIMAT0000663mmu-miR-21873162Otud3uguaccaaucuaguUCGUGUu |||||| ucuugaagucgcucAGCACAa28314334[mm9:4:138451319-138451339:-]0.63031206-11.19-0.1171
MIMAT0000741mmu-miR-37773162Otud3uguuUUCAACGGA--AACACACUa ||| ||::| |||||||| cuucAAGCUGUUUUGUUGUGUGAc219121144[mm9:4:138451509-138451532:-]0.62361617-14.53-0.5279
MIMAT0003184mmu-miR-487b73162Otud3uuCACCUACUGGGACAU-GCUAa ||||:| ||:|||| |||| ggGUGGGU-UCCUUGUACCGAUu221293314[mm9:4:138451339-138451360:-]0.63031340-26.31-0.3498
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G062325Otud3Mus musculus73162
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Otud3RAID00230265mmu-miR-218-5pmiRNAMIMAT0000663Otud3mRNA73162Prediction0.1828
Otud3RAID00386529mmu-miR-93-5pmiRNAMIMAT0000540Otud3mRNA73162Prediction0.1828
Otud3RAID00646738mmu-miR-92b-3pmiRNAMIMAT0004899Otud3mRNA73162Prediction0.1828
Otud3RAID00765799mmu-miR-377-3pmiRNAMIMAT0000741Otud3mRNA73162Prediction0.2202
Otud3RAID00818110mmu-miR-5622-5pmiRNAMIMAT0022371Otud3mRNA73162Prediction0.1828
Otud3RAID01024507mmu-miR-149-5pmiRNAMIMAT0000159Otud3mRNA73162Prediction0.1828
Otud3RAID01238032mmu-miR-24-3pmiRNAMIMAT0000219Otud3mRNA73162Prediction0.1828
Otud3RAID01704513mmu-miR-101a-3pmiRNAMIMAT0000133Otud3mRNA73162Prediction0.1828
Otud3RAID01838256mmu-miR-142a-5pmiRNAMIMAT0000154Otud3mRNA73162Prediction0.1828
Otud3RAID01873911mmu-miR-3620-5pmiRNAMIMAT0029878Otud3mRNA73162Prediction0.1828
Otud3RAID02292970mmu-miR-144-3pmiRNAMIMAT0000156Otud3mRNA73162Prediction0.1828
Otud3RAID02552381mmu-miR-721miRNAMIMAT0003515Otud3mRNA73162Prediction0.1828
Otud3RAID02582239mmu-miR-7000-3pmiRNAMIMAT0027903Otud3mRNA73162Prediction0.1828
Otud3RAID02655904mmu-miR-101b-3pmiRNAMIMAT0000616Otud3mRNA73162Prediction0.1828
Otud3RAID02672727mmu-miR-134-3pmiRNAMIMAT0016985Otud3mRNA73162Prediction0.1828
Otud3RAID02793030mmu-miR-6540-5pmiRNAMIMAT0025585Otud3mRNA73162Prediction0.1828
Otud3RAID02909527mmu-miR-7578miRNAMIMAT0029578Otud3mRNA73162Prediction0.1828
Otud3RAID03122969mmu-miR-124-3pmiRNAMIMAT0000134Otud3mRNA73162Prediction0.1828
Otud3RAID03215664mmu-miR-539-3pmiRNAMIMAT0017208Otud3mRNA73162Prediction0.1828
Otud3RAID03552186mmu-miR-487b-3pmiRNAMIMAT0003184Otud3mRNA73162Prediction0.1828
Otud3RAID03593896mmu-miR-21a-5pmiRNAMIMAT0000530Otud3mRNA73162Prediction0.1828
Otud3RAID03996870mmu-miR-325-3pmiRNAMIMAT0004640Otud3mRNA73162Prediction0.1828
Otud3RAID04732497G730013B05RiklncRNA619312Otud3protein73162Microarray//RNA-seq0.6606