DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Thoc6; Wdr58 ATTTA 291-1316 1440-1444

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT597013 mmu-miR-1194 Mus musculus Thoc6 386612 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT597015 mmu-miR-1195 Mus musculus Thoc6 386612 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT597014 mmu-miR-3089-5p Mus musculus Thoc6 386612 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004746 mmu-miR-409-5p 386612 Thoc6 uacgUUUCAA-CGAGCCCA-UUGGa |:| || |||: ||| |||| uaugAGAUUUAGCUU-GGUGAACCg 2 20 118 141 [mm9:17:23805632-23805655:-] 0.4852 120 0 -15.33 -0.7490 MIMAT0001093 mmu-miR-411* 386612 Thoc6 ccAAUCACCUGGCACAAUGUAu ||:||| ||| ||||||| gcUUGGUGAACC--GUUACAUu 2 21 129 148 [mm9:17:23805625-23805644:-] 0.4852 165 7 -17.99 -0.1791 MIMAT0004237 mmu-miR-742 386612 Thoc6 aaaugggucguaccaCCGAAAg |||||| caaaauaaaauuuuaGGCUUU- 2 8 167 187 [mm9:17:23805586-23805606:-] 0.5301 120 6 -8.61 -0.3813 MIMAT0005852 mmu-miR-1194 386612 Thoc6 uccuaGAUC-GUCAAUGAGUAAg ||:| | | ||||||| ucaggCUGGCCUGGAACUCAUUu 2 18 70 92 [mm9:17:23805681-23805703:-] 0.4852 148 7 -17.14 -0.2769 MIMAT0000533 mmu-miR-26a 386612 Thoc6 ucgGAUAGGACCUAAU-GAACUu || ::||| ||| ||||| gaaCUCAUUUGGCUUAGCUUGAu 2 20 83 105 [mm9:17:23805668-23805690:-] 0.4852 127 0 -12.75 -0.1476 MIMAT0000534 mmu-miR-26b 386612 Thoc6 ugGAUAGGACUUAAU-GAACUu || ::||: ||| ||||| aaCUCAUUUGGCUUAGCUUGAu 2 20 84 105 [mm9:17:23805668-23805689:-] 0.4852 123 0 -10.96 -0.1476 MIMAT0000662 mmu-miR-216a 386612 Thoc6 agugucaacGGUCG-ACUCUAAu || |: ||||||| ucucaaacuCCUGUAUGAGAUUu 2 14 105 127 [mm9:17:23805646-23805668:-] 0.4852 144 7 -12.28 -0.4906 MIMAT0000666 mmu-miR-320 386612 Thoc6 agcgGGAGAGUUGGGUCGAAAa || :| |::||||||| ugaaCCGUUACAUUCAGCUUUu 2 19 135 156 [mm9:17:23805617-23805638:-] 0.5077 154 7 -17.03 -0.9626 MIMAT0001420 mmu-miR-433 386612 Thoc6 uguggcuccucggGUAGUACUa |||||||| -------------CAUCAUGAc 2 10 1 9 [mm9:17:23805764-23805772:-] 0.5320 145 7 -8.92 -0.3406 MIMAT0003172 mmu-miR-542-3p 386612 Thoc6 aaAGUC---AAUAGUUAGACAGUgu |||| ||:|:: |||||| auUCAGCUUUUGUUGUCCUGUCAaa 3 21 146 170 [mm9:17:23805603-23805627:-] 0.5077 135 0 -14.81 -0.1686 MIMAT0003729 mmu-miR-216b 386612 Thoc6 aguguaaacGGACGU-CUCUAAa ||||:| |||||| ucucaaacuCCUGUAUGAGAUUu 2 14 105 127 [mm9:17:23805646-23805668:-] 0.4852 125 6 -17.57 -0.3042 MIMAT0004896 mmu-miR-590-3p 386612 Thoc6 ugAUCGAAUA--UGUAUUUUAAu |: | |:| | |||||||| guUGUCCUGUCAAAAUAAAAUUu 2 20 157 179 [mm9:17:23805594-23805616:-] 0.5301 150 7 -4.95 -0.8202

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G072155 Thoc6 Mus musculus 386612

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Thoc6 mmu-miR-1194 beg:73 end:93 pic:3' TCCTAGATCGT-CAATGAGTAAG 5'& ||.|| | |||||||. &5' -----CTGGCCTGGAACTCATTT 3' Thoc6 mmu-miR-433 beg:0 end:9 pic:3' TGTGGCTCCTCGGGTAGTACTA 5'& |||||||| &5' -------------CATCATGA- 3' Thoc6 mmu-let-7b beg:0 end:21 pic:3' TTGGT-GTGTTGGATGATGGAGT 5'& || || ||| ||..||| &5' ---CATCATGACCCTGTATTTCA 3' Thoc6 mmu-miR-1195 beg:65 end:90 pic:3' ACTCGTCCGACCGGAGCTTGAGT 5'& | ||||||||||| ||||||| &5' -GCTCAGGCTGGCCTGGAACTCA 3' Thoc6 mmu-miR-151-5p beg:21 end:41 pic:3' TGATCTGACACT-CGAGGAGCT 5'& .||||| |||| |||. | &5' GCTAGA--GTGATGCTTGT--- 3' Thoc6 mmu-miR-1933-5p beg:0 end:10 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& ||.|||||| &5' --------------CATCATGAC- 3' Thoc6 mmu-miR-1937a beg:32 end:51 pic:3' ACCCCCGAGCA---GGCCCTAA 5'& |||.|| ..||||| &5' -----GCTTGTGTTTTGGGAT- 3' Thoc6 mmu-miR-1950 beg:3 end:30 pic:3' ACTGG--TATAGGAATCTACG-TCT 5'& ||||| .|||.. .|| || ||| &5' TGACCCTGTATTTCAGGA-GCTAGA 3' Thoc6 mmu-miR-320 beg:136 end:157 pic:3' AGCGGGAGAGTTGGGTCGAAAA 5'& || |. | |..|||||||| &5' ---CCGTTAC-ATTCAGCTTTT 3' Thoc6 mmu-miR-330star beg:33 end:47 pic:3' AGAGACGTCCGGGACACGAAACG 5'& |.||||.|||| &5' -----------CTTGTGTTTTG- 3' Thoc6 mmu-miR-3471 beg:91 end:110 pic:3' TTACGGAATGTCAACCTAGAGT 5'& ||.| .| ||||||| &5' ---GCTTAGCTT---GATCTCA 3' Thoc6 mmu-miR-464 beg:119 end:137 pic:3' ATAGAGTGTCTTATTTGAACCAT 5'& ||| |.||||||. &5' --------AGATTTAGCTTGGTG 3' Thoc6 mmu-miR-691 beg:8 end:25 pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& |||. .|||||||. &5' ----CTGTA---TTTCAGGAG- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Thoc6; Wdr58 mmu-miR-100 34 59 GUGUU--CAAG--CCUAGAUGCCCAA- :| |||: ||| || ||||| UGCUUGUGUUUUGGGA--UAGGGGUUU Thoc6; Wdr58 mmu-miR-101b 146 168 GAAGUCGAUAGUGUCAUGACAU ||||||| |:: || |||| AUUCAGCUUUUGUUGUCCUGUC Thoc6; Wdr58 mmu-miR-103 2 42 -AGUAUCGGGACAUG---------------UUACGA-CGA ||||: |||||||: :||||| |: AUCAUGACCCUGUAUUUCAGGAGCUAGAGUGAUGCUUGUG Thoc6; Wdr58 mmu-miR-125a 45 76 GUGUCCAAUUUCCCA------------GAGUCCCU :|| |:|||| |||||| --UGGGAU-AGGGGUUUUAAACUUUAGCUCAGGC- Thoc6; Wdr58 mmu-miR-129-3p 32 60 -UACGA----AAAACCCCAUUCCCGAA- ||||| ||||||| ||:|||:|| GAUGCUUGUGUUUUGGGAUAGGGGUUUU Thoc6; Wdr58 mmu-miR-149 27 76 CCUCACU-------------UCUGUGCC------------UCG GUCU |||||| :||:| || ||| |||: AGAGUGAUGCUUGUGUUUUGGGAUAGGGGUUUUAAACUUUAGCUCAGGC Thoc6; Wdr58 mmu-miR-216b 106 129 -AGUGUAAACGGACGU-CUCUAAAGGG ||| ||||:| ||||||| CUCAAACU--CCUGUAUGAGAUUUA-- Thoc6; Wdr58 mmu-miR-26a 73 106 -CGGAUAGGACCU------------AAUGAACUU ||: |||||| | :||||| GGCUGG-CCUGGAACUCAUUUGGCUUAGCUUGAU Thoc6; Wdr58 mmu-miR-299 115 143 UACAUACACCCU-----GCCAUUUGGU- |||||| :|||:||||: CUGUAUGAGAUUUAGCUUGGUGAACCGU Thoc6; Wdr58 mmu-miR-29a 6 29 -UUGGC---UAAAGUCUACCACGAU- :||| |||||||: |||| UGACCCUGUAUUUCAGGA---GCUAG Thoc6; Wdr58 mmu-miR-337 12 32 UUUCCGUAGUAUAUCCUCGA-CUU- |:||: ||||||| ||: ---UGUAUUUC--AGGAGCUAGAGU Thoc6; Wdr58 mmu-miR-339 30 57 -ACU-CGAGGACC---UCCUGUCCCU- ||| |||: || :|||:||||: GUGAUGCUUGUGUUUUGGGAUAGGGGU Thoc6; Wdr58 mmu-miR-351 45 76 GUCCGAGUUUCCCGAG----------GAGUCCCU :|| |:|||:|: |||||| UGGGAU--AGGGGUUUUAAACUUUAGCUCAGGC- Thoc6; Wdr58 mmu-miR-380-5p 115 143 CGCGUACA--AGAU---ACCAGUUGGU- :|:||| |:|| |||| ||||: CUGUAUGAGAUUUAGCUUGGUGAACCGU Thoc6; Wdr58 mmu-miR-381 18 44 UGUCUCUCGA----AC-GGGAACAUAU ||| ||||| || : |||||:| UCAG-GAGCUAGAGUGAUGCUUGUGUU Thoc6; Wdr58 mmu-miR-411 119 144 UGACUCCC-----AAUCACCUGGCACAA |||| ||:||| ||||| -AUGAGAUUUAGCUUGGUGAACCGUU-- Thoc6; Wdr58 mmu-miR-464 103 138 AUAGAGUG-----------UCUUAUUUGAACCAU- |||||| ||| |:||||||: GAUCUCAAACUCCUGUAUGAGAUUUAGCUUGGUGA Thoc6; Wdr58 mmu-miR-497 19 42 AUGUUUGGUGUCAC-ACGA-CGAC | :|:|:| |||| |||| |: CAGGAGCUAGAGUGAUGCUUGUG- Thoc6; Wdr58 mmu-miR-615 45 86 -UUCUC-CCUC------------UGGGUCCGA----GCCU ::|| ||:| :|:|||||| :||| UGGGAUAGGGGUUUUAAACUUUAGCUCAGGCUGGCCUGGAA Thoc6; Wdr58 mmu-miR-665 49 85 -AUUCCC------UGGAGUCGGA-------GGACCA ||:||| ||:|:|||: ||||| AUAGGGGUUUUAAACUUUAGCUCAGGCUGGCCUGGA Thoc6; Wdr58 mmu-miR-668 21 36 CCAUCACCCGGCUCGG-CUCACUGU ||||: ||||||: ----------GGAGCUAGAGUGAUG Thoc6; Wdr58 mmu-miR-685 133 159 -CAC--GG-AGUG-GAGUCGGUAACU ||| || |:|| :|||||: ||| GGUGAACCGUUACAUUCAGCUUUUGU Thoc6; Wdr58 mmu-miR-687 2 30 -AGUAAC--GACGUAAGGUCCU--AUC- |||| |||:|||:||||| ||| AUCAUGACCCUGUAUUUCAGGAGCUAGA Thoc6; Wdr58 mmu-miR-688 27 43 CUUAUUCAUCAGCGGACGCU :|||: :||:||:| ---AGAGUGA-UGCUUGUGU Thoc6; Wdr58 mmu-miR-691 2 26 AAAAG-AC-GGAGA---GAAGUCCUUA || || || || :|||||||: --AUCAUGACC-CUGUAUUUCAGGAGC Thoc6; Wdr58 mmu-miR-804 69 92 AGGUCC-ACU---CCUUGUUGAGUGU :|||| ||: ||| |||||: CUCAGGCUGGCCUGGA---ACUCAUU Thoc6; Wdr58 mmu-miR-320 149 156 AAGC---------------------GGGAGAGUUGGGUCGAAAA || |: | |::|||||||| CCUGUAUGAGAUUUAGCUUGGUGAACCGUUAC-AUUCAGCUUUUG Thoc6; Wdr58 mmu-miR-100 36 57 guguuCAAGCCUAGAUGCCCAA |||: |: || ||||| cttgtGTTTTGGGATAGGGGTT Thoc6; Wdr58 mmu-miR-103 3 37 AGUAUCGGGACAU---------G---UUACGACGA ||||: ||||||| | |:|| |||| TCATGACCCTGTATTTCAGGAGCTAGAGTGATGCT Thoc6; Wdr58 mmu-miR-125a 48 76 gUGUCC----AAUUUCCCA--GAGUCCcu |:||| ||||| | |||||| gATAGGGGTTTTAAACTTTAGCTCAGGct Thoc6; Wdr58 mmu-miR-129-3p 33 58 UACGA----AAAACCCCAUUCCCGAA ||||| ||||||| ||:|||:|| ATGCTTGTGTTTTGGGATAGGGGTTT Thoc6; Wdr58 mmu-miR-149 9 29 ccucacuucuGUGCCUCGGUCU || |||||:||| ccctgtatttCA-GGAGCTAGA Thoc6; Wdr58 mmu-miR-200c 1 18 gGUAGUAAUGGGCCGUCAUAAu |||||| ||| | ||||| -CATCATGACC---CTGTATTt Thoc6; Wdr58 mmu-miR-216b 107 130 AGUGUAAACGGACGU-CUCUAAAggg ||| | | ||||:| ||||||| TCAAACT--CCTGTATGAGATTTagc Thoc6; Wdr58 mmu-miR-26a 78 105 CGGAU----AG--GACCUAAU-GAACUu ||||: || :||| ||| ||||| GCCTGGAACTCATTTGGCTTAGCTTGAt Thoc6; Wdr58 mmu-miR-29a 9 38 uuGGC-UAAAGUC--------UACCACGAu |:| ||||||| :|| |||| ccCTGTATTTCAGGAGCTAGAGTGATGCTt Thoc6; Wdr58 mmu-miR-320 135 156 aagcGGGAGAGUUGGGUCGAAAA || |: | |::|||||||| tgaaCCGTTAC-ATTCAGCTTTT Thoc6; Wdr58 mmu-miR-337 4 30 uUUCCGUAGUAUA---UCCUCGA-CUu | | | ::||| ||||||| || cATGACCCTGTATTTCAGGAGCTAGAg Thoc6; Wdr58 mmu-miR-339 31 55 ACU-CGAGGAC---CUCCUGUCCCu ||| |||: || :|||:|||| TGATGCTTGTGTTTTGGGATAGGGg Thoc6; Wdr58 mmu-miR-351 52 76 guCCGAGUUUCCCGAG---GAGUCCcu ||:|: || ||: |||||| ggGGTTTTAA--ACTTTAGCTCAGGct Thoc6; Wdr58 mmu-miR-411 118 145 ugACUC-----CCAAUCACCUGGCAcaa |||| | ||:||| ||||| taTGAGATTTAGCTTGGTGAACCGTtac Thoc6; Wdr58 mmu-miR-464 114 136 auagagugUCUUAUUUGAACCAu ||| | |:|||||| cctgtatgAGATTTAGCTTGGTg Thoc6; Wdr58 mmu-miR-497 17 38 AUGUUUGGUGUCACACGACGAc | ||:: :|| ||| |||| TTCAGGAGCTAGAGTGATGCTt Thoc6; Wdr58 mmu-miR-615 60 79 uucucccUCUGGGUCCGAGCCu || |:|||||| || aaactttAG-CTCAGGCT-GGc Thoc6; Wdr58 mmu-miR-665 50 84 AUUCCC------UG-----GAGUCGGA--GGACCa ||:||| || ||||| || ||||| TAGGGGTTTTAAACTTTAGCTCAGGCTGGCCTGGa Thoc6; Wdr58 mmu-miR-668 11 35 ccaucacccggCUCGG-CUCACUgu ||||: |||||| ctgtatttcagGAGCTAGAGTGAtg Thoc6; Wdr58 mmu-miR-685 134 158 CAC--GG-AGUG-GAGUCGGUAACu ||| || |:|| :|||||: ||| GTGAACCGTTACATTCAGCTTTTGt Thoc6; Wdr58 mmu-miR-687 3 26 AGUAAC---GACGUAAGGUCCUauc ||| || |||:|||:||||| TCA-TGACCCTGTATTTCAGGAgct Thoc6; Wdr58 mmu-miR-688 22 42 CUU-AU-UCAUCAGCGGACGCu ||: || ||| | :||:||:| GAGCTAGAGT-GATGCTTGTGt Thoc6; Wdr58 mmu-miR-691 1 25 aaaAG-AC--GGAGA-GAAGUCCUua || || ||| | :||||||| -caTCATGACCCTGTATTTCAGGAgc

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Thoc6 RAID00072396 mmu-miR-3078-5p miRNA MIMAT0014864 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID00145476 mmu-miR-590-3p miRNA MIMAT0004896 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID00214533 mmu-miR-1195 miRNA MIMAT0005856 Thoc6 mRNA 386612 CLIP-seq 0.5483 Thoc6 RAID00387662 mmu-miR-216b-5p miRNA MIMAT0003729 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID01010997 mmu-miR-1194 miRNA MIMAT0005852 Thoc6 mRNA 386612 CLIP-seq 0.5483 Thoc6 RAID01299151 mmu-miR-320-3p miRNA MIMAT0000666 Thoc6 mRNA 386612 Prediction 0.2202 Thoc6 RAID01646587 mmu-miR-26a-5p miRNA MIMAT0000533 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID02023133 mmu-miR-6945-3p miRNA MIMAT0027791 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID02215121 mmu-miR-6927-3p miRNA MIMAT0027755 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID02357028 mmu-miR-216a-5p miRNA MIMAT0000662 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID02361015 mmu-miR-3089-5p miRNA MIMAT0014899 Thoc6 mRNA 386612 CLIP-seq 0.5483 Thoc6 RAID02436504 mmu-miR-5119 miRNA MIMAT0020627 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID02618275 mmu-miR-410-3p miRNA MIMAT0001091 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID03500381 mmu-miR-542-3p miRNA MIMAT0003172 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID03563640 mmu-miR-26b-5p miRNA MIMAT0000534 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID03907491 mmu-miR-433-3p miRNA MIMAT0001420 Thoc6 mRNA 386612 Prediction 0.1828 Thoc6 RAID03966502 mmu-miR-136-5p miRNA MIMAT0000148 Thoc6 mRNA 386612 Prediction 0.1828