DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Otud1 ATTTA 311-1675 1891-1895;2112-2116;2704-2708

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT011146 mmu-miR-26a-5p Mus musculus Otud1 71198 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G067655 Otud1 Mus musculus 71198

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Otud1 mmu-let-7a 169 185 UGAUAUGUUGGAUGAUGGAGU ||::| |||:|||| ----GACGGCA-ACUGCCUCU Otud1 mmu-let-7b 155 185 UUGGUGU-GUU--GGA------UGAUGGAGU ||||| || || |||:|||| -UCCACAUCAUCCCCGACGGCAACUGCCUCU Otud1 mmu-let-7c 245 285 -UUGGUAUGU--------------UGGA--UGAUGGAGU- :|||:|:|| |||| || ||:||| AGACCGUGCACUACAUCGCGGACCACCUGGACCACUUCAG Otud1 mmu-let-7i 169 185 -UGUCGUGUUUGAUGAUGGAGU ||:||| |||:|||| GACGGCA------ACUGCCUCU Otud1 mmu-miR-10a 56 81 -GUGUUUAA---GCCUAGAUGUCCCAU |||: |||||| ||||| GCACGUCCCGGGCGGAUCC-CAGGGA- Otud1 mmu-miR-122a 505 539 -UGUUUGUGGUA-----ACAGU-----GUGAGGU |:::||||:|| |||: |||||| AAUGGACACUAUGAUGCUGUUUUUGACCACUCCU Otud1 mmu-miR-125a 207 244 -GUGUCCAA--UUUC--------CCA--GAGUCCCU- :||:|| |:|| || || ||||| GUACGGGGACCAGAGCCUGCACCGGGAGCUGAGGGAG Otud1 mmu-miR-127 48 76 -CGGU--UCGA-----GUCUGCCUAGGCU |||: :|| |:|:||||||| GGCCGUAGGCACGUCCCGGGCGGAUCCC- Otud1 mmu-miR-128a 409 437 -UUUUCUCUGGCCAA-----GUGACACU :|::|||:|:|| ||| ||| GGAGGGAGGCUGGAGAGCCCCACCGUGU Otud1 mmu-miR-128b 409 437 -CUUUCUCUGGCCAA-----GUGACACU ||::|||:|:|| ||| ||| GGAGGGAGGCUGGAGAGCCCCACCGUGU Otud1 mmu-miR-129-5p 27 51 -UCGUUCGGGUC-UGGCGUUUUUC ||| :|||||| || ||:||:: GAGCCGGCCCAGAACGGCGAAGGC Otud1 mmu-miR-133a 194 221 UGUCGACCA---ACUU-CCCCUGGUU- |||| | || ||||||||: UCAGCAAGACUGUGUACGGGGACCAGA Otud1 mmu-miR-133b 188 221 AUCGAC-----------CAACUUCCCCUGGUU- ||||| || ||||||||: GAGCUGUCAGCAAGACUGUGUACGGGGACCAGA Otud1 mmu-miR-135b 56 92 -GUGUA--------------UCCUUACUUUUCGGUAU |||:| |||:| ||:||||:| GCACGUCCCGGGCGGAUCCCAGGGACGAGAAGCUAG- Otud1 mmu-miR-137 471 511 -GAUGCG----CAUAAG-------AAU----UCGUUAUU- ||||| |||||: ||: ||||||:: UCUACGGCCCAGUAUUUGGCUCAGUUGGCUCAGCAAUGGA Otud1 mmu-miR-142-3p 227 261 GGUAUUUCA--UCCUU---------UGUGAUGU- | ::|| |||:| :||||||| ACCGGGAGCUGAGGGAGCAGACCGUGCACUACAU Otud1 mmu-miR-149 408 429 -CCUCACUUCUGUGC-CUCGGUCU |||| |:||:| | ||||| UGGAG-GGAGGCUGGAGAGCCC-- Otud1 mmu-miR-150 286 313 -GUGACCAUGUUCC-CA--ACCCUCU- |||| | |:|| | ||||:|| CCACUCAUUGAGGGCGACGUGGGGGAG Otud1 mmu-miR-15a 502 527 GUGUUUG--GUAAUAC-ACGACGAU :||| || |||| |||||:| AGCAAUGGACACUAUGAUGCUGUUU Otud1 mmu-miR-15b 361 386 -ACAUUUGGUACUACACG---ACGAU- || ::|||||: || ||||: UUGCUGGCCAUGGG--GCAGAUGCUGA Otud1 mmu-miR-181c 815 854 UGAG---UGGCUGUCCAAC--------------UUACAA- ||| :||| ||||||| :||||| UCUCAGAGCCG-CAGGUUGCUGGGCACCUGAAUGAUGUUU Otud1 mmu-miR-186 455 473 -UUCGGGUUUUCCUCUUAAGAAAC ::||||| |||:||||| UGGGCCCA----GAGGAUUCUC-- Otud1 mmu-miR-188 221 244 UGGGAGGUGGUA--CG-UUCCCUAC ||| ||||: || :||||| -GCCUGCACCGGGAGCUGAGGGAG- Otud1 mmu-miR-193 335 352 GACCCUGAAACAUCCGGUCAA ||||:| ||:||||:| AUGGGGC---GUGGGCCGGA- Otud1 mmu-miR-196a 166 184 -GGUUGUUGUACUUUGAUGGAU ||:||::|| |||:||| CCCGACGGCA----ACUGCCUC Otud1 mmu-miR-200c 449 488 -GGUAGUAAUGGG--------------CCG--UCAUAAU |:||| :||| ||| |||||| ACUAUCUGGGCCCAGAGGAUUCUCUACGGCCCAGUAUUU Otud1 mmu-miR-205 212 244 GUCUGA----GGCCA----CCUU-ACUUCCU- :||| || | |||: |||:||| GGGACCAGAGCCUGCACCGGGAGCUGAGGGAG Otud1 mmu-miR-207 105 138 -CUCCCUCCUCUCGGUCCU---------CUUCG- |||| |||||| ||||| ||:|| CGAGGU-GGAGAGGCAGGACAAGUACCUGAGGCA Otud1 mmu-miR-214 176 228 -GACGG----------ACAG--------ACA--------------CGGACGACA ||||| |||| ||| |||||| ACUGCCUCUACCGAGCUGUCAGCAAGACUGUGUACGGGGACCAGAGCCUGCA-- Otud1 mmu-miR-217 117 140 UAGGUCAG--UCAAGGACUACGUCAU ||| ||| ||||| |||| --GCAGGACAAGUACCUGAGGCAGA- Otud1 mmu-miR-22 479 506 UGUCA--AGA--AGUUGACCG--UCGAA |||| |: |||::|||| ||| CCAGUAUUUGGCUCAGUUGGCUCAGCA- Otud1 mmu-miR-24 202 241 -GACAA--------------GGACGA----CUUGACUCGGU |||| ||||| ||:||||| ACUGUGUACGGGGACCAGAGCCUGCACCGGGAGCUGAGG-- Otud1 mmu-miR-25 769 793 AGUCUGGCUCU-GUUCACGUUAC- :||||:|| :|:|||:|||| GUAGACUGACUUUAGGUGUAAUGC Otud1 mmu-miR-28 406 431 -GAGUUA--UCUGACA-CUCGAGGAA || :| ||:||| |||| || ACUGGAGGGAGGCUGGAGAGCCCCA- Otud1 mmu-miR-291b-3p 645 666 CUGUUUGUUUUACCUACGUGAAA :||||||||| |||| ||| --UGAACAAAAUGCAUGCUCUUG Otud1 mmu-miR-293 725 757 UGUGAUGUUUGAGA-------CG---CCGUGA- ||| ||:|||||| |: |||||| CCAC-ACGAACUCUAAUUAGGGUAAUGGCACUU Otud1 mmu-miR-294 725 759 UGUGUGUUU--------UCCCU---UCGUGAAA- |||||:|| |||| :||||||| CCACACGAACUCUAAUUAGGGUAAUGGCACUUUU Otud1 mmu-miR-295 732 759 UCUGAGU----UUUCAUCAUCGUGAAA- |||| |::||| |:||||||| -AACUCUAAUUAGGGUAAUGGCACUUUU Otud1 mmu-miR-296 405 430 -UGUCCUAACUCCC-CC-C-CGGGA || ||| |||| || | |||| UACUGGAGGGAGGCUGGAGAGCCCC Otud1 mmu-miR-29b 892 914 UUGUGACUAAAGUUUAC-CACGAU- :||| ||:|| |||||| --UGCUGUAUA-AAGUGAGUGCUAC Otud1 mmu-miR-29c 892 914 -UGGCUAAAGUUUAC-CACGAU- :|:| ||:|| |||||| UGCUGUAUA-AAGUGAGUGCUAC Otud1 mmu-miR-301b 233 258 ACGAAA--CU-GUUAUGGUAACGUGAC ||| || ||: |||:| ||||| AGCUGAGGGAGCAG-ACCGU-GCACUA Otud1 mmu-miR-31 85 107 GUCGAUACGGU-CGUAGAACGGA ||||| ||| |:| || ||| AAGCUA-GCCCUGUACCUGGCCG Otud1 mmu-miR-324-3p 87 114 -GGUCGU--CGUGGACCCCG-UCACC- |:||| |:|||||| :|||| GCUAGCCCUGUACCUGGCCGAGGUGGA Otud1 mmu-miR-324-5p 320 348 -GUGGUUACGGGAU---CCCC-UACGC- |:|:: ||||| |||| :|| | UCGCUGCUGCCCAAGAUGGGGCGUGGGC Otud1 mmu-miR-326 405 425 -UGACCUCCUUCCCGGGUCUCC ||||||||:||| |::||| UACUGGAGGGAGG--CUGGAGA Otud1 mmu-miR-328 336 352 UGCCUUCCCGUCUCUCCCGGUC- :||||: |||||:| ----UGGGGCGU---GGGCCGGA Otud1 mmu-miR-330 813 840 AGAGACGUC-CGG-GA-C-ACGAAACG- |||| ||| ||| | | |||| || CCUCU-CAGAGCCGCAGGUUGCUGGGCA Otud1 mmu-miR-331 304 343 AAGAUCCUAUC---------------CGGGU----CCCCG |:|| || ||||| ||||| --GUGGGGGAGUUUAUUAUCGCUGCUGCCCAAGAUGGGGCG Otud1 mmu-miR-335 657 668 UGUAAAAAGCAAUAACGAGAACU- ||||||||| -------------AUGCUCUUGAA Otud1 mmu-miR-338 499 525 -AGUUGUUUUA-GUGA--CUACGACCU |||:||| |||| ||||||| CUCAGCAAUGGACACUAUGAUGCUGU- Otud1 mmu-miR-340 115 141 -CCGAUAU-UUCAUUGACUCUGCCU- ||| ||||| |||||:| || AGGCAGGACAAGUACCUGAGGCAGAG Otud1 mmu-miR-342 688 723 CUGCCCA------CGCUAAA----GACAC-ACUCU- :||| ||| | :|||| ||:|| -UUGGGGGAAAUGGCGCGUGUCAGUUGUGUUGGGAG Otud1 mmu-miR-346 46 74 UCUCCG---UCCGUGA---GCCCGUCUGU |||| |||||| |||||:||: -AAGGCCGUAGGCACGUCCCGGGCGGAUC Otud1 mmu-miR-351 52 82 -GUCCGAGUUU--CCCG---AGGAGUCCCU- :|||| |: |||| ||| |||||| GUAGGCACGUCCCGGGCGGAUCC-CAGGGAC Otud1 mmu-miR-362 447 471 AAGUG-UGGAUCCAAGGU-UCCUAA- ||| |:||:|| ||| |||||| -CCACUAUCUGGGC-CCAGAGGAUUC Otud1 mmu-miR-363 233 256 AAUGUCUACCUA---UGGCACGUUA :| || ||| |||||||| -AGCUGAGGGAGCAGACCGUGCAC- Otud1 mmu-miR-370 268 302 UUGGUCCAAGGUGGGGUCG-----------UCCG- ||| || ||||::|||| :||| CACCUGGA-CCACUUCAGCCCACUCAUUGAGGGCG Otud1 mmu-miR-376a 464 479 UGCACCUAAAAGGAGAUGCUA ||| |:|||||||: ---AGGA---UUCUCUACGGC Otud1 mmu-miR-376b* 337 359 -UUGGUAUCUUCCUUAUAGGUG- :: |:|:|: |:|||||| | GGGGCGUGGGCCGGAUAUCC-CG Otud1 mmu-miR-378 671 696 UGUGUCCUGGACC--UCAGUCCUC- | |||||||| |||::||:| UCUGAGGACCUGACAAGUUGGGGGA Otud1 mmu-miR-379 430 444 GGAUGCAAGGUAUCAGAUGGU- ||:| |||||||| -------ACCGU-GUCUACCAU Otud1 mmu-miR-382 262 284 -GCUUAGGUGGUGCUUGUUGAAG- ||:| ||||| | || ||||| GCGGA-CCACCUGG-ACCACUUCA Otud1 mmu-miR-411 233 254 -UGACUCCCAAUCACCUGGCACAA :||||||| || ||||||| AGCUGAGGG--AGCAGACCGUGC- Otud1 mmu-miR-412 79 116 -UGC----CGAUC---------ACCUGG-UCCACUUCA ||| ||||| ||| || |||||:|| GACGAGAAGCUAGCCCUGUACCUGG-CCGAGGUGGAGA Otud1 mmu-miR-423 234 255 -GACUCCCCGGAGUCUGGCUCGA ||||||| ||||||| || GCUGAGGGAG--CAGACCGUGCA Otud1 mmu-miR-424 546 569 AGGUUUUGUACU--UAACGACGAC |||:|::|||| |||| ||| CCCAGAGUAUGACAAUUGGUGCA- Otud1 mmu-miR-425 341 361 CCGCCUGUGCUGUAAGGGCUA |:||:| ||: |||||| CGUGGGC-CGGAUAUCCCGAA Otud1 mmu-miR-431 92 126 -GGACGUACUGCCGGA----------CGUUCUGU- ||||:| :|||| |||:|||| CCCUGUACC-UGGCCGAGGUGGAGAGGCAGGACAA Otud1 mmu-miR-433-5p 411 437 CUUAUUACUGUCCGA---------GUGGCAU- |: ||||| ||||||: ------AGGGAGGCUGGAGAGCCCCACCGUGU Otud1 mmu-miR-450b 228 249 AUAAGUCCUUGUA--UGACGUUUU |:|||:| : |||:| ---CCGGGAGCUGAGGGAGCAGAC Otud1 mmu-miR-455-5p 40 63 -GCUACAUCAGGUUUCCGUGUAU || | || ||: ||||||:| ACGGCGAAGGCCGUAGGCACGUC Otud1 mmu-miR-464 537 568 -AUAGAGU----GUCUUAU-UUG--AACCAU- |||| | ||||:|| :|| |||||: CUAUC-CUAACCCAGAGUAUGACAAUUGGUGC Otud1 mmu-miR-468 692 717 GUCUG---UGUGCGUGUAGUCAGUAU- :|| :|:||: :|||||::|: GGGAAAUGGCGCGU--GUCAGUUGUGU Otud1 mmu-miR-469 102 121 CCUGUGGUUCUAGUUACUUUCUCCGU- :||:||:| ::||||||| ---GGCCGAGGU-----GGAGAGGCAG Otud1 mmu-miR-471 386 409 -ACACUUUUC-GUGAUAUGAUGCAU |||||| |||| ||||| AUGUGAAUAUACACUUAACUACU-- Otud1 mmu-miR-484 406 429 UAGCCCUCCC-CUGA---CUCGGACU | |||||| |:|| ||||| -ACUGGAGGGAGGCUGGAGAGCCC-- Otud1 mmu-miR-485-5p 160 186 CUUAAGUAG----UGCCGGU--CGGAGA- ||||| ||||| |||||| ---AUCAUCCCCGACGGCAACUGCCUCUA Otud1 mmu-miR-490 798 834 -GUCGU--ACCU-CAGGAGG---------UCCAAC- |||: || ||||||: |||||| UCAGUUUUUGAAUGUCCUCUCAGAGCCGCAGGUUGC Otud1 mmu-miR-491 398 433 GGAGU-----ACCUUCC-CAA-------GGGGUGA ||:| ||||:|| | |||||| ACUUAACUACUGGAGGGAGGCUGGAGAGCCCCACC Otud1 mmu-miR-494 826 856 -UCCAAA-------GGGCACA-UACAAAGU ||||| ||:| ||||||| CAGGUUGCUGGGCACCUGAAUGAUGUUUCC Otud1 mmu-miR-497 819 837 AUGUUUGGUGUCACACGACGAC- :|:||:||| |:||||| --AGAGCCGCAG---GUUGCUGG Otud1 mmu-miR-500 89 115 GACUUGGGAA------CGGGUCCACGUA |:|||| ||| ||||| | --UAGCCCUGUACCUGGCCGAGGUGGAG Otud1 mmu-miR-501* 216 237 -GUUUAGGAACG-GGCCCACGUAA ||:| || ||| ||||| || CCAGAGCC-UGCACCGGGAGCU-- Otud1 mmu-miR-503 303 330 -CGUCAUGACAAG----GGCGACGAU- |::| : |||: :|||||||: CGUGGGGGAGUUUAUUAUCGCUGCUGC Otud1 mmu-miR-542-5p 338 361 GCACUGUACUA---CUA-GGGGCUC |:|:||: ||| :||||| --GGGCGUGGGCCGGAUAUCCCGAA Otud1 mmu-miR-546 430 445 CUGAGGCAC-GGUGGUA- ||||| |:||||| ---ACCGUGUCUACCAUG Otud1 mmu-miR-551b 320 344 -GUGACUUU-GGUUCAUACCCAGC- |:||| : ||||| ||||| || UCGCUGCUGCCCAAG-AUGGGGCGU Otud1 mmu-miR-615 305 353 UUCUCCCUC---------------UGGG------------UCCGAGCCU |:||||| :||| :||| |||| -UGGGGGAGUUUAUUAUCGCUGCUGCCCAAGAUGGGGCGUGGGC-CGGAU Otud1 mmu-miR-665 210 234 AUUCCCUGGAGUCGGA---GGACCA :|||||| ||||| || || -CGGGGACCAGAGCCUGCACCGGGA Otud1 mmu-miR-666 11 36 CCGAGAG-UGUCGACA--CGGGCGA |||| :|||| ||| || CGCUCGGAGCAGCGGCGAGCCGGCC Otud1 mmu-miR-667 686 711 GAACCCGACCC-----ACCGUCCACAGU- |:|||| ||||: |||||| ----AGUUGGGGGAAAUGGCGCGUGUCAG Otud1 mmu-miR-669c 156 181 UGUGU-GUAGGUGUG--UGUUGAUA |||| ||||| |: :|||||: CCACAUCAUCCCCGACGGCAACUGC Otud1 mmu-miR-670 222 244 AAGUGGUGUAUG-UGAGUCCCUA | ||| : :|| ||||| -CCUGCACCGGGAGCUGAGGGAG Otud1 mmu-miR-673 209 241 GAGGUUCCUGGUCUC-GAC----------ACUC- |::||||||||| ||| |||| --ACGGGGACCAGAGCCUGCACCGGGAGCUGAGG Otud1 mmu-miR-674 526 569 -AUGUGGUGAGGGUAGA----G---------------UCACG | ||||||||:||| | :|||| UUUGACCACUCCUAUCCUAACCCAGAGUAUGACAAUUGGUGCA Otud1 mmu-miR-675-5p 201 232 -UGACA-----CCC-GGGAAA-GGCGUGGU- ||||| ||| || |:|||||: GACUGUGUACGGGGACCAGAGCCUGCACCGG Otud1 mmu-miR-677 307 327 AGUCUUCGAUUAGUAGUGACUU :|:||:| ||:|||:||| -GGGGAGUUUAUUAUCGCUGC- Otud1 mmu-miR-678 215 235 GGAGGUCA-GGAACGUGGCUCUG |||| || |||||||:|| --ACCAGAGCC-UGCACCGGGAG Otud1 mmu-miR-680 354 385 -GGG----------GGUACAGUCGUCUACGGG ||| ||||| :||||||||: UCCCGAAUUGCUGGCCAUGG-GGCAGAUGCUG Otud1 mmu-miR-681 321 343 UCGACGGACGG--UC-GCUCCGAC |||| ||||| || :|:||| CGCUG-CUGCCCAAGAUGGGGCG- Otud1 mmu-miR-686 222 248 AGAAGUGGCA---GAC-CCUUCGUUA || ||||| ||| ||:||||: CCUGCACCGGGAGCUGAGGGAGCAGA Otud1 mmu-miR-687 316 340 -AGUAACGACGUAAGGUCCUAUC- |:|| ||||| ||| |||:| AUUAUCGCUGCUGCCCAAGAUGGG Otud1 mmu-miR-689 4 29 CCUG-GGGCGG--CUCGCCCCUGC- |:| |||||: |||| | |:|| CGGCACCCGCUCGGAGCAGCGGCGA Otud1 mmu-miR-691 176 202 AAAAGACGGAGAGA-------AGUCCUUA |||||||| |||| || ---ACUGCCUCUACCGAGCUGUCAGCAAG Otud1 mmu-miR-693-3p 217 239 AAUGUCGG-UGUAGACUUUCGACG | |||| :|| | |::||||| -CAGAGCCUGCA-CCGGGAGCUGA Otud1 mmu-miR-695 319 335 AAGUCAGUGGAUACGGGUUAGA ||:|: ||||||| ----AUCGCUGCUGCCCAAG-- Otud1 mmu-miR-701 8 28 AGGUAGAUAAA-GUCGCCGAUU || || ||||||| ACCCGCUCGGAGCAGCGGCG-- Otud1 mmu-miR-702 303 349 CUCGCCCC--------------AU-----------UUCC-CACCCGU |:|||| |: ::|| |||||| -CGUGGGGGAGUUUAUUAUCGCUGCUGCCCAAGAUGGGGCGUGGGCC Otud1 mmu-miR-704 688 710 GAUCCUCGUC-UCGUGUACAGA |:||:| :||:|:|||| UUGGGGGAAAUGGCGCGUGUCA Otud1 mmu-miR-705 416 443 ACGGG----UGGGGUGGA--GGGUGG- ||: :||||||| :|:||| GGCUGGAGAGCCCCACCGUGUCUACCA Otud1 mmu-miR-706 454 475 AAAAAACUCU-GUC-CCAAAGAGA- ||:| ||| || |||||| ----CUGGGCCCAGAGGAUUCUCUA Otud1 mmu-miR-709 163 186 -AGGAGGA---CGGAGACGGAGG- ||| || || |||||||: AUCC-CCGACGGCAACUGCCUCUA Otud1 mmu-miR-711 55 77 GAAUGUAGAGAGGGGCCC----AGGG- :|| | :|||||| |||| --GGCA-CG--UCCCGGGCGGAUCCCA Otud1 mmu-miR-712 220 245 CCAUGG-CG-GGCCC---ACUUCCUC- :|| || ||||| |||:|||| --AGCCUGCACCGGGAGCUGAGGGAGC Otud1 mmu-miR-715 301 342 GUGCGCCCCC-------------AC-ACG-----UGCCUC |||:||||| || ||| |:||:| GACGUGGGGGAGUUUAUUAUCGCUGCUGCCCAAGAUGGGGC Otud1 mmu-miR-718 96 116 GCUGUGGGCCGGC-CCGCCUUC :|||:||||| ||:|||: --GUACCUGGCCGAGGUGGAGA Otud1 mmu-miR-719 93 112 UUGUAAAAAGACA----UCGGCUCUA- |||| :||||||:| --------CCUGUACCUGGCCGAGGUG Otud1 mmu-miR-742 476 502 AAAUGGGUCGU--ACC------ACCGAAAG :|||||:| ||| ||||| --GGCCCAGUAUUUGGCUCAGUUGGCUC-- Otud1 mmu-miR-744 86 104 -CGACAAUCGGGAUCGGGGCGU ||| ||||||: ||:| AGCU---AGCCCUGUACCUGG- Otud1 mmu-miR-761 303 331 ACACAG--UCAA--AGUGG-GACGACG- ||| |||| |:|:| ||||||| CGUGGGGGAGUUUAUUAUCGCUGCUGCC Otud1 mmu-miR-762 59 97 CGAGACAGGGCC-----GGGG--------------UCGGGG ||||||| :||| |||||: ----CGUCCCGGGCGGAUCCCAGGGACGAGAAGCUAGCCCUG Otud1 mmu-miR-763 459 491 CGGUGACC-AAGAA-----GGGUCG---ACC- ||| || |||| |||||: ||| CCCAGAGGAUUCUCUACGGCCCAGUAUUUGGC Otud1 mmu-miR-764-3p 604 629 UGUCAACGGUGA---UACCGG---AGGA |||||| |||||| ||| ---CUUGCCAAGUCCAUGGCCAUAUCCC Otud1 mmu-miR-770-3p 269 291 -GGUCGAGGUGCAGUCCGGGUGC || | |||| |||| ||||| ACCUGGACCACUUCAG-CCCACU Otud1 mmu-miR-801 485 509 CAGCUAAGGCGUGCGUGUCGUUAG |:|: || |: || ||||||| UUUGGCUCAGUUGGCUCAGCAAUG Otud1 mmu-miR-9* 860 883 -UGAAAGCCAAUA-GAU--CGAAAU :|||| ||| ||| ||| AGCUUUGGGUGAGCCUACUGCUA-- Otud1 mmu-miR-96 689 712 -UCGUUUUUACACGAUCACGGUUU :| ::||||| || |||:||: UGGGGGAAAUG-GCGCGUGUCAGU Otud1 mmu-miR-98 168 189 -UUGUUAUGUUGAAU--GAUGGAGU :||: :||||| ||||| CGACG--GCAACUGCCUCUACCG-- Otud1 mmu-miR-99a 196 215 -UGUUCUAGCCUAGAUGCCCA :||||| :| |||||| AGCAAGACU--GUGUACGGGG Otud1 mmu-miR-99b 196 215 GCGUUCCAGCCAAGAUGCCCAC ||||| | || |||||| AGCAAGA-CUGUG-UACGGGG- Otud1 mmu-miR-133a 212 219 UG----------UCGAC-----------CAACUUCCCCUGGUU ||||| || ||||||||: CUGCCUCUACCGAGCUGUCAGCAAGACUGUGUACGGGGACCAGA Otud1 mmu-miR-133b 212 219 A-----------UCGAC-----------CAACUUCCCCUGGUU ||||| || ||||||||: CUGCCUCUACCGAGCUGUCAGCAAGACUGUGUACGGGGACCAGA Otud1 mmu-miR-150 716 723 GUG--------------ACCAUGUU-------CCCAACCCUCU ||| |: | ||||||||| UGACAAGUUGGGGGAAAUGGCGCGUGUCAGUUGUGUUGGGAGAA Otud1 mmu-miR-181a 383 390 ---------------UGAGUGG----CUGUC-GCAACUUACAA :|| :|| |:||| :| ||||||| CGGAUAUCCCGAAUUGCUGGCCAUGGGGCAGAUGCUGAAUGUG Otud1 mmu-miR-181b 383 390 -------GGG-----UGGCUG-----UCGUU----ACUUACAA ||| :|:|:| :|||: ||||||| CGGAUAUCCCGAAUUGCUGGCCAUGGGGCAGAUGCUGAAUGUG Otud1 mmu-miR-181b 806 813 ---------------------GGGUGGCUGUCGUU-ACUUACAA ||: |||: ||||||| AGACUGACUUUAGGUGUAAUGCCUUAAU-CAGUUUUUGAAUGUC Otud1 mmu-miR-181c 383 390 ---------------UGAGUGG----CUGUCCA--ACUUACAA :|| :|| |:||| ||||||| CGGAUAUCCCGAAUUGCUGGCCAUGGGGCAGAUGCUGAAUGUG Otud1 mmu-miR-181d 383 390 U--------------UGGGUGG----CUGUUGUU-ACUUACAA :|: :|| |:||: ||||||| CGGAUAUCCCGAAUUGCUGGCCAUGGGGCAGAUGCUGAAUGUG Otud1 mmu-miR-200c 480 487 -----GGUAGUAAUGGG--------------CC--GUCAUAAU |:||| :||| || ||||||| AUCCACUAUCUGGGCCCAGAGGAUUCUCUACGGCCCAGUAUUU Otud1 mmu-miR-24* 52 59 UGACUAUA----------------GUCGA----GUCAUCCGUG |:|| | |||||||| GAGCAGCGGCGAGCCGGCCCAGAACGGCGAAGGCCGUAGGCACG Otud1 mmu-miR-326 459 466 UGACCUCCUU----------------------CCCGGGUCUCC ||||||||||| AGCCCCACCGUGUCUACCAUGAUCCACUAUCUGGGCCCAGAGGA Otud1 mmu-miR-326 546 553 UGACCUCCUUCCC----------------------GGGUCUCC ||||||| CACUAUGAUGCUGUUUUUGACCACUCCUAUCCUAACCCAGAGU Otud1 mmu-miR-335 659 666 UGUAAAAAGCAAUA--------------------ACGAGAACU ||||||||| AUCCCUGUCCAAAAUGUAUAUUGAACAAAAUGCAUGCUCUUGAA Otud1 mmu-miR-337 232 239 UU-------------------UC-CGUA-GUAUAUCCUCGACUU || || || :||||||||: GCAAGACUGUGUACGGGGACCAGAGCCUGCACC-GGGAGCUGAGG Otud1 mmu-miR-34b 176 183 ---------------------------GUUAGUCGAUUAAUGUGACGGAU |:| |:|| ||||||| AAACAAGUACCGAUUCCACAUCAUCCCCGA-CGGCA------ACUGCCUC Otud1 mmu-miR-379 435 442 GGAUGCAA-----------------------GGUAUCAGAUGGU ||:| |||||||| UUAACUACUGGAGGGAGGCUGGAGAGCCCCACCGU-GUCUACCAU Otud1 mmu-miR-380-3p 254 261 --------------------UUCUACACCUGGUA--UGAUGUAU ::|| ||||:| ||||||| GAGCCUGCACCGGGAGCUGAGGGAGCA-GACCGUGCACUACAUC Otud1 mmu-miR-411 430 437 -----------UGACUCCCAAUC-ACC--------UGGCACAA |||| || :| ||| ||||||| UACACUUAACUACUGGAGGGAGGCUGGAGAGCCCCACCGUGUC Otud1 mmu-miR-422b 610 617 C-----------------CGGAAGACUGA------GGUUCAGGUC || ||| ||||||||| CCCAGAUACAGAAAAAACGCGA--UGAAGAACUUGCCAAGUCCAU Otud1 mmu-miR-423 185 192 GA-----------------CUCCC-----CGGAGUCUGGCUCGA || || ||||| |||||||| CCGAUUCCACAUCAUCCCCGACGGCAACUGCCUCU-ACCGAGCUG Otud1 mmu-miR-431 197 204 -----GGA---CGUACUGCCGGA--------------CGUUCUGU || ||| || |||| ||||||| CAUCCCCGACGGCA--ACUGCCUCUACCGAGCUGUCAGCAAGACU Otud1 mmu-miR-484 219 226 UAGCCCU--------------------CCCCUGA-CUCGGACU |||||| ||||||| UACCGAGCUGUCAGCAAGACUGUGUACGGGGACCAGAGCCUGC Otud1 mmu-miR-494 848 855 --------------UCCAAA-------GGGCACA-UACAAAGU ||||| ||:| ||||||| CCUCUCAGAGCCGCAGGUUGCUGGGCACCUGAAUGAUGUUUCC Otud1 mmu-miR-503 321 328 ------------------CGUCAUGACAAG----GGCGACGAU | | |||: :|||||||: CCACUCAUUGAGGGCGACGUGGGGGAGUUUAUUAUCGCUGCUGC Otud1 mmu-miR-542-5p 164 171 --GCACUGUACUAC---------------------UAGGGGCUC :| |:|| || |||||||| CCUGAGGCA-GAGAAACAAGUACCGAUUCCACAUCAUCCCCGAC Otud1 mmu-miR-689 210 217 CC--UGGGGC-GGCUC-------------------GCCCCUGC :||:| ||||| ||||||| AACUGCCUCUACCGAGCUGUCAGCAAGACUGUGUACGGGGACC Otud1 mmu-miR-709 177 184 ----------------------AGGAGGA---CGGAGACGGAGG ||| || || |||||||: AACAAGUACCGAUUCCACAUCAUCC-CCGACGGCAACUGCCUCUA Otud1 mmu-miR-801 501 508 C-------------------AGCUAAGGCGUGCGUGUCGUUAG |:| || |: || ||||||| GAUUCUCUACGGCCCAGUAUUUGGCUCAGUUGGCUCAGCAAUG Otud1 mmu-miR-9* 859 866 UGAAAGCCAAUAG------------------------AUCGAAAU ||||: |||||||: CGCA--GGUUGCUGGGCACCUGAAUGAUGUUUCCUGAUAGCUUUGG Otud1 mmu-let-7a 162 184 ugauauGUUG--GAUGAUGGAGu |:|| | |||:|||| catcccCGACGGCAACTGCCTCt Otud1 mmu-let-7b 159 184 uUGGU--GUGUUG--GAUGAUGGAGu |:|| | |:|| | |||:|||| cATCATCCCCGACGGCAACTGCCTCt Otud1 mmu-let-7c 246 262 uUGGUAUGUUGGAUGAUGGAGu |||:|:| ||||| || gACCGTGC-----ACTACATCg Otud1 mmu-let-7i 158 184 UGUCGU----GUU--UGAUGAUGGAGu ||| || |:| :| |||:|||| ACATCATCCCCGACGGCAACTGCCTCt Otud1 mmu-miR-10a 60 81 guguuuaaGCCUAGAUGUCCCau |||||| ||||| gtcccgggCGGATC-CCAGGGac Otud1 mmu-miR-122a 506 538 UGUUUGUGGUA-----ACAG-----UGUGAGGu |:::||||:|| |||: |||||| ATGGACACTATGATGCTGTTTTTGACCACTCCt Otud1 mmu-miR-125a 217 242 GUGUCCAAUUU--CCC-AGAGUCCCU || || |: | ||| || ||||| CAGAGCCTGCACCGGGAGCTGAGGGA Otud1 mmu-miR-127 55 76 CGGUUC-GAGUCUGCCUAGGcu | || | | |:|:||||||| GGCACGTCCCGGGCGGATCCca Otud1 mmu-miR-128a 410 436 uUUUCUCUGGCC-----AAGUGACACu |::|||:|:|| ||| ||| gAGGGAGGCTGGAGAGCCCCACCGTGt Otud1 mmu-miR-128b 410 436 CUUUCUCUGGCC-----AAGUGACACu ||::|||:|:|| ||| ||| GAGGGAGGCTGGAGAGCCCCACCGTGt Otud1 mmu-miR-129-5p 28 50 UCGUUCGGGUC-UGGCGUUUuuc ||| :|||||| || ||:|| AGCCGGCCCAGAACGGCGAAggc Otud1 mmu-miR-133a 194 219 uGUCGACC--A-AC-UUCCCCUGGUu |||| | | || | |||||||| tCAGCAAGACTGTGTACGGGGACCAg Otud1 mmu-miR-133b 199 219 aUC-GACCAAC-UUCCCCUGGUu || ||| || | |||||||| aAGACTG--TGTACGGGGACCAg Otud1 mmu-miR-135b 71 92 guguaUCCUUACUUUUCGGUau |||:| ||:||||:| atcccAGGGACGAGAAGCTAgc Otud1 mmu-miR-137 472 509 GAUGC---G-CAUAA---GA--------AUUCGUUAuu ||||| | ||||| || | |||||| CTACGGCCCAGTATTTGGCTCAGTTGGCTCAGCAATgg Otud1 mmu-miR-142-3p 233 259 gguAUUUCAUC--CU---UUGUGAUGU |:|:| || || :||||||| agcTGAGGGAGCAGACCGTGCACTACA Otud1 mmu-miR-149 409 430 CCUCACUUCUGUGC-CUCGGucu |||| |:||:| | ||||| GGAG-GGAGGCTGGAGAGCCcca Otud1 mmu-miR-150 701 723 GUGACCAUGUU--CCCAACCCUCU |:| || ||: | ||||||||| CGCGTGT-CAGTTGTGTTGGGAGA Otud1 mmu-miR-150 291 311 GUGAC-CAUGUUCCCAACCCUCU ||:|| | :|:| | ||||:|| CATTGAGGGCGACG--TGGGGGA Otud1 mmu-miR-15a 501 526 GU-GUU--UGGUAAUAC-ACGACGAu || ||| : || |||| |||||:| CAGCAATGGACACTATGATGCTGTTt Otud1 mmu-miR-15b 362 387 ACAUUUGGUACUAC----ACGACgau || ::|||||: | ||||| TGCTGGCCATGGGGCAGATGCTGaat Otud1 mmu-miR-181a 363 390 uGAGUGG----CUGUC-GCAACUUACAa || :|| |:||| :| ||||||| gCTGGCCATGGGGCAGATGCTGAATGTg Otud1 mmu-miR-181b 367 390 gGGUG-GCUGUC-GUUACUUACAa |||: |:||| :: ||||||| gCCATGGGGCAGATGCTGAATGTg Otud1 mmu-miR-181b 791 813 ggguggcuGUC-GUUACUUACAa ||| : ||||||| gccttaatCAGTTTTTGAATGTc Otud1 mmu-miR-181c 363 390 uGAGUGG----CUGUC--CAACUUACAa || :|| |:||| | ||||||| gCTGGCCATGGGGCAGATGCTGAATGTg Otud1 mmu-miR-181d 365 390 uugGGUG-GCUGU-UGUUACUUACAa |||: |:|| |:: ||||||| tggCCATGGGGCAGATGCTGAATGTg Otud1 mmu-miR-186 456 474 uuCGGGUUUUCCUCUUAAGAAAc ||||| |||:||||| | ggGCCCA----GAGGATTCTCTa Otud1 mmu-miR-188 220 244 UGGGAGGUGGUAC---GUUCCCUac | ||| ||||: | ::||||| AGCCTGCACCGGGAGCTGAGGGAgc Otud1 mmu-miR-193 335 352 gACCCUGAAACAUCCGGUCaa ||||:| ||:||||:| aTGGGGC---GTGGGCCGGat Otud1 mmu-miR-196a 167 183 GGUUGUUGUACUUUGAUGGAu ||:||::| ||||:||| CCGACGGC----AACTGCCTc Otud1 mmu-miR-200c 462 487 gguagUAAUGG--GCC--GUCAUAAu ||| :| ||| ||||||| agaggATTCTCTACGGCCCAGTATTt Otud1 mmu-miR-205 217 242 GUCU--GA---GGCCACCUUACUUCCU |||| || |||| | : |||:||| CAGAGCCTGCACCGG-GAGCTGAGGGA Otud1 mmu-miR-207 106 127 CUCCCUCCUCUCGGUCCUCUUCg || || |||||| ||||| ||| GA-GGTGGAGAGGCAGGACAAGt Otud1 mmu-miR-214 171 194 GACG--GACAGACACGG-ACGACA | || ||| || | || ||||| CGGCAACTGCCTCTACCGAGCTGT Otud1 mmu-miR-217 116 140 uaGGUCAG-UCAAGGACUACGUCau | :| | ||| ||||| |||| ggCAGGACAAGTACCTGAGGCAGag Otud1 mmu-miR-22 479 506 uGUCA-AGA---AGUUGACC--GUCGaa |||| |:| |||::||| |||| cCAGTATTTGGCTCAGTTGGCTCAGCaa Otud1 mmu-miR-24 203 224 GACAAGGACGACUUGACUCGGu |||| : | || | ||||| CTGTGTACGGGGACCAGAGCCt Otud1 mmu-miR-24* 33 59 ugacUAUAGUCG----AGUCAUCCGUG | | |:|| | |||||||| gcccAGAACGGCGAAGGCCGTAGGCAC Otud1 mmu-miR-28 409 431 gaguuaUCUGA-CACUCGAGGaa ||:|| | |||| || ggagggAGGCTGGAGAGCCCCac Otud1 mmu-miR-291b-3p 643 665 cuguUUGUUUUACCUACGUGAAa ||||||||| |||| ||| attgAACAAAATGCATGCTCTTg Otud1 mmu-miR-292-3p 10 38 uGUGAGUUUUG--GAC---C-GCCGUGaa |:|||::|:| | | | |||| | cCGCTCGGAGCAGCGGCGAGCCGGCCCag Otud1 mmu-miR-295 731 757 ucUGAGUUU----UCAUCAUCGUGAAA |||| || :||| |:||||||| gaACTCTAATTAGGGTAATGGCACTTT Otud1 mmu-miR-296 406 429 UGUCCUAACUCC--CC-CCCGGGa || ||| |||| || | |||| ACTGGAGGGAGGCTGGAGAGCCCc Otud1 mmu-miR-29b 890 912 uuguGACUAAAGUUUAC-CACGAU ||| | | ||:|| |||||| tttgCTG-TATAAAGTGAGTGCTA Otud1 mmu-miR-29c 893 912 uGGCUAAAGUUUAC-CACGAU |:| | | ||:|| |||||| gCTG-TATAAAGTGAGTGCTA Otud1 mmu-miR-324-3p 88 109 GGUC--GUCGUGGACCCCGUCACC |:|| | |:|||| ||| | || CTAGCCCTGTACCT--GGCCGAGG Otud1 mmu-miR-324-5p 321 344 GUGGUUACGGGAUC--CCCUACGC |:|:: ||||| || |||: |:| CGCTGCTGCCCAAGATGGGGCGTG Otud1 mmu-miR-326 446 466 ugaccuccuuCCCGGGUCUCC ||||||||||| tccactatctGGGCCCAGAGG Otud1 mmu-miR-326 533 553 ugaccuccuucccGGGUCUCc ||||||| actcctatcctaaCCCAGAGt Otud1 mmu-miR-326 406 424 UGACCUCCUUCCCGGGUCUCc ||||||||:||| |::||| ACTGGAGGGAGG--CTGGAGa Otud1 mmu-miR-328 331 350 ugcCUUCCCGUCUCUCCCGGUC || ||| | | |||||:| caaGATGGG--GCGTGGGCCGG Otud1 mmu-miR-330 838 867 agaGACGUCC-----GGGAC--ACGAAACg ||| | | :|||| |||||| cacCTGAATGATGTTTCCTGATAGCTTTGg Otud1 mmu-miR-331 312 341 aAGAUCCUAUC-----CGGGU----CCCCG |:|| || | ||||| ||||| gTTTATTATCGCTGCTGCCCAAGATGGGGC Otud1 mmu-miR-337 218 239 UUUCCGUAGUAUAUCCUCGACUu |:|| | || :|||||||| AGAGCCTGCA-CCGGGAGCTGAg Otud1 mmu-miR-338 500 525 AGUUGUU-UUAGUG--ACUACGACcu |||:||| :: ||| |||||||| TCAGCAATGGACACTATGATGCTGtt Otud1 mmu-miR-340 116 139 CCGAUAU-UUCAUUGACUCUGCCU ||| : | ||||| |||||:| || GGCAGGACAAGTACCTGAGGCAGA Otud1 mmu-miR-342 699 721 CUGCCCACGCUAAAGACAC-ACUCU |:|| |||: | | |||| ||:|| GGCGCGTGTCAGT--TGTGTTGGGA Otud1 mmu-miR-346 45 73 ucUCCG---UCCGUG-A--GCCCGUCUgu |||| |||||| | |||||:|| gaAGGCCGTAGGCACGTCCCGGGCGGAtc Otud1 mmu-miR-34b 157 183 GU-UAGU--CGAUUAAUG-UGACGGAu || |||| | :| :| ||||||| CACATCATCCCCGACGGCAACTGCCTc Otud1 mmu-miR-351 53 80 gUCCGAGU--UUCCCG--AGGAGUCCCU |||| |: |||| :| |||||| tAGGCACGTCCCGGGCGGATCCCAGGGA Otud1 mmu-miR-362 446 469 AAGUG-UGGAUCCAAGGU-UCCUAA | ||| |:||:|| ||| |||||| TCCACTATCTGGG-CCCAGAGGATT Otud1 mmu-miR-363 232 256 aauGUCUACC---UAUGGCACGUua | || || | |||||||| gagCTGAGGGAGCAGACCGTGCAct Otud1 mmu-miR-376a 461 478 ugCACCUAAAAGGAGAUGCua | ||||| ||||||| caGAGGATT---CTCTACGgc Otud1 mmu-miR-376b* 338 358 uugGUAUCUUCCUUAUAGGug |:|:|: |:|||||| gggCGTGGGCCGGATATCCcg Otud1 mmu-miR-379 423 442 ggaugcaaGGUAUCAGAUGGU ||:| |||||||| gagccccaCCGT-GTCTACCA Otud1 mmu-miR-380-3p 238 261 UUCUACACCUGGUA--UGAUGUAu |:|: | ||||:| ||||||| AGGGAGCAGACCGTGCACTACATc Otud1 mmu-miR-382 263 282 GCUUAGGUGGUGCUUGUUGAAG ||:| ||||| :|:|| ||||| CGGA-CCACC-TGGACCACTTC Otud1 mmu-miR-411 234 254 uGACUCCCAAUCACCUGGCACaa ||||||| || ||||||| gCTGAGGG--AGCAGACCGTGca Otud1 mmu-miR-411 406 437 UGA-CUCCCAAUCACC--------UGGCACAa ||| ||||| : ||| ||||||| ACTGGAGGGAGGCTGGAGAGCCCCACCGTGTc Otud1 mmu-miR-412 80 115 UGC----CGAUC---ACCUGG------UCCACUUCa ||| ||||| || ||| |||||:|| ACGAGAAGCTAGCCCTGTACCTGGCCGAGGTGGAGa Otud1 mmu-miR-422b 594 617 ccggaagacUGA--GGUUCAGGUc ||| ||||||||| cgatgaagaACTTGCCAAGTCCAt Otud1 mmu-miR-423 167 192 GACUCCC-----CGGAGUCUGGCUCGA | || || ||||| |||||||| CCGACGGCAACTGCCTC-TACCGAGCT Otud1 mmu-miR-423 235 254 GACUCCC-CGGAGUCUGGCUCGa ||||||| | ||||||| || CTGAGGGAG---CAGACCGTGCa Otud1 mmu-miR-424 546 569 aGGUUUUGUAC--UUAACGACGac |||:|::||| ||||| ||| cCCAGAGTATGACAATTGGTGCaa Otud1 mmu-miR-425 339 360 CCG--CCUGUGCUGUAAGGGCUa ||| ||:| ||: |||||| GGCGTGGGC-CGGATATCCCGAa Otud1 mmu-miR-431 176 204 gGACGUA-----CU-GCCGGACGUUCUGu |||| | || | |:| ||||||| aCTGCCTCTACCGAGCTGTCAGCAAGACt Otud1 mmu-miR-431 99 124 GGAC--GUACUGCC-GGACGUUCUGU |||| |: |::|| |||:|||| CCTGGCCGAGGTGGAGAGGCAGGACA Otud1 mmu-miR-433-5p 414 435 cuuauuaCUGUCCGAGUGGCAu || || | |||||| gaggctgGAGAGCCCCACCGTg Otud1 mmu-miR-450b 206 230 AUAAGUCCUU-GUAU--GACGUuuu |:| |:||:| || | ||||| TGTACGGGGACCAGAGCCTGCAccg Otud1 mmu-miR-455-5p 41 62 GCUACAUCAGGUUUCCGUGUAu ||: | || ||: ||||||:| CGGCGAAGGCCGTAGGCACGTc Otud1 mmu-miR-464 543 566 AUAGAGUGUCUUAUU-UGAACCAu || | || || ||:| | ||||| TAACCCAGAGTATGACAATTGGTg Otud1 mmu-miR-469 94 119 ccugUGGUUCUAGUUAC-UUUCUCCGU ||| |: |:| | ::||||||| ctgtACC-TGGCCGAGGTGGAGAGGCA Otud1 mmu-miR-471 387 410 ACACUU-UUCGUGAUAUGAUGcau |||||| | |||| ||||| TGTGAATATACACTTAACTACtgg Otud1 mmu-miR-484 204 226 uagcccuCCCCU-GACUCGGACu ||||| | ||||||| tgtgtacGGGGACCAGAGCCTGc Otud1 mmu-miR-484 405 430 uaGCCCUCCC-CUGA---CUCGGacu | |||||| |:|| ||||| taCTGGAGGGAGGCTGGAGAGCCcca Otud1 mmu-miR-485-5p 157 184 cuuaAGUAG----UGCCG--GUCGGAGA ||||| ||||| | |||||| cacaTCATCCCCGACGGCAACTGCCTCT Otud1 mmu-miR-490 799 832 GUC--GUACCU-CAGGA--------G-GUCCAAC ||| : || | ||||| | ||||||| CAGTTTTTGAATGTCCTCTCAGAGCCGCAGGTTG Otud1 mmu-miR-491 406 432 gGAGUACCUUCC-----CAAGGGGUGa || : ||:||| | |||||| aCTGGAGGGAGGCTGGAGAGCCCCACc Otud1 mmu-miR-494 834 855 uCCAAAGGGC--ACAUACAAAGu || ||:| || ||||||| tGGGCACCTGAATG-ATGTTTCc Otud1 mmu-miR-497 816 838 auGU-UUGGUGUCACACGACgac || |:||:||| ||||| ctCAGAGCCGCAGGTTGCTGggc Otud1 mmu-miR-500 94 114 GACUUGGGAACGGGUCCACGUa ||| | ||| ||| ||||| | CTGTA-CCTGGCCGAGGTGGAg Otud1 mmu-miR-501* 217 238 GUUUAGGAACG-GGCCCACGuaa ||:| || ||| ||||| || CAGAGCC-TGCACCGGGAGCtga Otud1 mmu-miR-503 309 328 CGUCAUGACAAGGGCGACGAu | ||| :| || :||||||| GGAGT-TTATTATCGCTGCTg Otud1 mmu-miR-542-5p 151 171 GC-ACUGUACUACUAGGGGCUc || | || || |||||||| CGATTCCA-CATCATCCCCGAc Otud1 mmu-miR-542-5p 341 360 GCA-CUGUACUACUAGGGGCUc ||| |:| ||| :||||| CGTGGGCCGGATA--TCCCGAa Otud1 mmu-miR-546 427 443 cuGAGGCAC-GGUGGUA | ||||| |:||||| ccCACCGTGTCTACCAT Otud1 mmu-miR-551b 321 342 GUGAC-UUUGGUUCAUACCCAGC |:||| : ||||| ||||| || CGCTGCTGCCCAAG-ATGGGGCG Otud1 mmu-miR-615 332 351 UUCUCCCUCUGGGUCCGAGCCU |||| || |:| ::||| |||| AAGATGG-GGCGTGGGC-CGGA Otud1 mmu-miR-665 209 233 auuCCCUGGAGUCG---GAGGACCa |||||| ||| | || || acgGGGACCAGAGCCTGCACCGGGa Otud1 mmu-miR-666 1 14 ccgagagugucgacacGGGCGA |||||| --------ttccggcaCCCGCT Otud1 mmu-miR-667 687 709 gAACCCGACC--CACCGUCCACAGU ||||| || ||||: |||||| gTTGGG--GGAAATGGCGCGTGTCA Otud1 mmu-miR-670 224 243 AAGUGGUGUAUGUGAGUCCCUa | ||||: : | :|| ||||| TGCACCG-GGA-GCTGAGGGAg Otud1 mmu-miR-673 220 241 gaGGUUCCUGG-UCUCGACACUC || | ||| :|||||| |:| agCC-TGCACCGGGAGCTGAGGG Otud1 mmu-miR-674 527 553 augUGGUGAGGGUA-----GAGUCACg ||||||||:|| | ||| | ttgACCACTCCTATCCTAACCCAGAGt Otud1 mmu-miR-675-5p 202 230 UGACA-----CCCGGG--AAAGGCGUGGu ||||| ||| || |:||||| ACTGTGTACGGGGACCAGAGCCTGCACCg Otud1 mmu-miR-677 306 327 aguCUUCGAUUAGUAGUGACuu |:||:| ||:|||:||| gggGGAGTTTATTATCGCTGct Otud1 mmu-miR-678 213 234 ggaGGUCAGGAACGUGGCUCUg |||| | |||||||:|| ggaCCAGAGCCTGCACCGGGAg Otud1 mmu-miR-680 365 384 gggGGUACAGUCGUCUACGgg ||||| :|||||||| tggCCATG-GGGCAGATGCtg Otud1 mmu-miR-681 321 343 uCGACGGACGG--UC-GCUCCGac |||| ||||| || :|:||| cGCTG-CTGCCCAAGATGGGGCgt Otud1 mmu-miR-687 317 338 AGUAACGACGUAAGGUCCUAUC |:|| ||||| ||| |||:| TTATCGCTGCTGCCCAAGATGG Otud1 mmu-miR-689 195 217 ccuggggcGGCUC--GCCCCUGc |:| | ||||||| cagcaagaCTGTGTACGGGGACc Otud1 mmu-miR-689 5 30 CCUGGGGCG-GC----UCGCCCCUgc || ||||| || ||||| || GGCACCCGCTCGGAGCAGCGGCGAgc Otud1 mmu-miR-691 173 201 aaaaGACGGAGA------GA-AGUCCUUa |||||||| || |||| || gcaaCTGCCTCTACCGAGCTGTCAGCAAg Otud1 mmu-miR-693-3p 216 238 aaUGUCGG-UGUAGACUUUCGACg | |||| :|| | |::||||| ccAGAGCCTGCA-CCGGGAGCTGa Otud1 mmu-miR-695 315 336 aagucAGUGGAUACGGGUUaga ||:|: ||||||| tattaTCGCTGCTGCCCAAgat Otud1 mmu-miR-700 341 362 cCACCUGAGCC-A-AGGGCgcac ||||:| ||| | ||||| cGTGGGC-CGGATATCCCGaatt Otud1 mmu-miR-701 9 29 agguagauaaaGUCGCCGAUu ||||||| | cccgctcggagCAGCGGCGAg Otud1 mmu-miR-702 332 348 cUCGCCCCAUUUCCCACCCGu || ||| | |||||| aAGATGGG----GCGTGGGCc Otud1 mmu-miR-705 425 444 acGGGUGGGGUGGAGGGUgg |||||| :::|| ||| gcCCCACCGTGTCTACCAtg Otud1 mmu-miR-706 450 473 aAAAAACUC-UGUC-CCAAAGAGA | | ||:| ||| || |||||| cTATCTGGGCCCAGAGGATTCTCT Otud1 mmu-miR-709 164 184 AGGAG--GACGGAGACGGAGg ||| | | || ||||||| TCCCCGACGGCAACTGCCTCt Otud1 mmu-miR-711 50 75 gaauguaGAG-AGGG---GCCCAGGG | | |||| ||| |||| ccgtaggCACGTCCCGGGCGGATCCC Otud1 mmu-miR-712 218 243 cCAUGG-CG-GGCCC---ACUUCCUC | :|| || ||||| |||:|||| aGAGCCTGCACCGGGAGCTGAGGGAG Otud1 mmu-miR-715 331 352 GUGC-GCCCC-CACACGUGCCUc || | :|||| ||| || |||| CAAGATGGGGCGTGGGC-CGGAt Otud1 mmu-miR-718 94 115 GCUGUGGGCCGGC-CCGCCUuc | ::|||:||||| ||:||| CTGTACCTGGCCGAGGTGGAga Otud1 mmu-miR-719 85 110 uuguaaaaaGACAU----CGGCUCUA ||||| ||||||:| aagctagccCTGTACCTGGCCGAGGT Otud1 mmu-miR-742 474 494 aaauGGGUCGUACCACCGAaag |||||:|| ||||| acggCCCAGTAT-TTGGCTcag Otud1 mmu-miR-744 78 98 cgacaaucggGAUCGGGGCGU |||||||:|:| ggacgagaagCTAGCCCTGTA Otud1 mmu-miR-761 305 329 ACACAGUCAA--AGUGG-GACGACG || | |||| |:|:| ||||||| TGGGGGAGTTTATTATCGCTGCTGC Otud1 mmu-miR-762 65 95 cgaGAC-AGGG--CCGG------GGUCGGGg | | |||| || | |:||||| gggCGGATCCCAGGGACGAGAAGCTAGCCCt Otud1 mmu-miR-763 477 498 CGGUGAC-CAAGAAGGGUCGACC ||| | | ||: |:|||:||| GCC-CAGTATTTGGCTCAGTTGG Otud1 mmu-miR-764-3p 601 628 ugUCAACGGU---GAUACCGG---AGGa | |||||| | |||||| ||| gaACTTGCCAAGTCCATGGCCATATCCc Otud1 mmu-miR-770-3p 267 290 GGUCGA---GGUGCAGUCCGGGUGc ||| || |||| || |||||| CCACCTGGACCACTTC-AGCCCACt Otud1 mmu-miR-801 485 508 cAGCUAAGGCGUGCGUGUCGUUAg |:|: || |: || ||||||| tTTGGCTCAGTTGGCTCAGCAATg Otud1 mmu-miR-96 690 711 uCGUUUUUACACGAUCACGGUuu | ::||||| || |||:|| gGGGGAAATG-GCGCGTGTCAgt Otud1 mmu-miR-98 164 184 uuguuaUGUUGAAUGAUGGAGu ||::| |||:|||| tccccgACGGC-AACTGCCTCt Otud1 mmu-miR-99a 197 214 uGUUCUAGCCUAGAUGCCCa ||||| | | | |||||| gCAAGA-CTG-TGTACGGGg Otud1 mmu-miR-99b 196 215 gCGUUCCAGCCAAGAUGCCCac |||| | | | | |||||| aGCAA-GACTG-TGTACGGGga

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Otud1 RAID00054624 mmu-miR-17-5p miRNA MIMAT0000649 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID00081511 mmu-miR-181a-5p miRNA MIMAT0000210 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID00083312 mmu-miR-883a-3p miRNA MIMAT0004849 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID00097724 mmu-miR-7223-3p miRNA MIMAT0028415 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID00214385 mmu-miR-7119-3p miRNA MIMAT0028136 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID00287317 mmu-miR-376b-3p miRNA MIMAT0001092 Otud1 mRNA 71198 Prediction 0.2202 Otud1 RAID00358608 mmu-miR-181c-5p miRNA MIMAT0000674 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID00433211 mmu-miR-511-5p miRNA MIMAT0004940 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID00590976 mmu-miR-294-3p miRNA MIMAT0000372 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID00725066 mmu-miR-291b-3p miRNA MIMAT0003190 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID00759887 mmu-miR-350-5p miRNA MIMAT0017040 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID00768503 mmu-miR-326-3p miRNA MIMAT0000559 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID00851120 mmu-miR-7028-3p miRNA MIMAT0027961 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID00860100 mmu-miR-290b-5p miRNA MIMAT0029900 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID00898553 mmu-miR-330-5p miRNA MIMAT0004642 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID00906779 mmu-miR-7060-3p miRNA MIMAT0028025 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID00925391 mmu-miR-1298-5p miRNA MIMAT0014809 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID00938488 mmu-miR-463-5p miRNA MIMAT0002104 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID00950767 mmu-miR-3102-3p.2-3p miRNA MIMAT0014935 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID01183380 mmu-miR-1903 miRNA MIMAT0007868 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID01257643 mmu-miR-20a-3p miRNA MIMAT0004627 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID01360495 mmu-miR-133a-5p miRNA MIMAT0003473 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID01471058 mmu-let-7f-2-3p miRNA MIMAT0017017 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID01700887 mmu-miR-208b-3p miRNA MIMAT0004939 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID01791531 mmu-miR-181d-5p miRNA MIMAT0004324 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID01810329 mmu-miR-6540-5p miRNA MIMAT0025585 Otud1 mRNA 71198 Prediction 0.2202 Otud1 RAID01866955 mmu-miR-7093-3p miRNA MIMAT0028093 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID01906586 mmu-miR-350-3p miRNA MIMAT0000605 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID01910227 mmu-miR-106a-5p miRNA MIMAT0000385 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID01945783 mmu-miR-203-3p miRNA MIMAT0000236 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID02051431 mmu-let-7c-1-3p miRNA MIMAT0004622 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID02078596 mmu-miR-217-5p miRNA MIMAT0000679 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID02086626 mmu-miR-26a-5p miRNA MIMAT0000533 Otud1 mRNA 71198 NGS (Next Generation Sequencing) 0.5483 Otud1 RAID02131151 mmu-miR-124-3p miRNA MIMAT0000134 Otud1 mRNA 71198 RIP-seq//RNA-seq//Prediction 0.7353 Otud1 RAID02148093 mmu-miR-19a-3p miRNA MIMAT0000651 Otud1 mRNA 71198 Prediction 0.2202 Otud1 RAID02184118 mmu-miR-1928 miRNA MIMAT0009391 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID02226370 mmu-miR-369-3p miRNA MIMAT0003186 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID02232102 mmu-miR-539-3p miRNA MIMAT0017208 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID02289352 mmu-miR-374c-5p miRNA MIMAT0014953 Otud1 mRNA 71198 Prediction 0.2202 Otud1 RAID02411794 mmu-miR-5624-3p miRNA MIMAT0022378 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID02464276 mmu-miR-330-3p miRNA MIMAT0000569 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID02550927 mmu-miR-499-5p miRNA MIMAT0003482 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID02581840 mmu-miR-3071-3p miRNA MIMAT0014851 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID02645199 mmu-miR-181b-5p miRNA MIMAT0000673 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID02681675 mmu-miR-494-3p miRNA MIMAT0003182 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID02823126 mmu-miR-6938-3p miRNA MIMAT0027777 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID02835344 mmu-miR-6931-5p miRNA MIMAT0027762 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID03125289 mmu-miR-7076-3p miRNA MIMAT0028059 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID03178641 mmu-miR-883b-3p miRNA MIMAT0004851 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID03467769 mmu-miR-93-5p miRNA MIMAT0000540 Otud1 mRNA 71198 CLIP-seq//Prediction 0.6308 Otud1 RAID03700098 mmu-miR-106b-5p miRNA MIMAT0000386 Otud1 mRNA 71198 CLIP-seq//Prediction 0.6308 Otud1 RAID03709631 mmu-miR-19b-3p miRNA MIMAT0000513 Otud1 mRNA 71198 Prediction 0.2381 Otud1 RAID03793768 mmu-miR-466l-3p miRNA MIMAT0005830 Otud1 mRNA 71198 Prediction 0.2202 Otud1 RAID03827263 mmu-miR-20b-5p miRNA MIMAT0003187 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID03869116 mmu-miR-26b-5p miRNA MIMAT0000534 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID03917895 mmu-miR-1a-3p miRNA MIMAT0000123 Otud1 mRNA 71198 CLIP-seq 0.5483 Otud1 RAID03940362 mmu-miR-147-5p miRNA MIMAT0017269 Otud1 mRNA 71198 Prediction 0.1828 Otud1 RAID04017488 mmu-miR-20a-5p miRNA MIMAT0000529 Otud1 mRNA 71198 CLIP-seq//Prediction 0.6308