DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 328234 Rnf182 aucucguCGUUUAUUACUAAGc |:| :| ||||||| aaaugauGUAUGU-AUGAUUCu 2 16 43 63 [mm9:13:43764130-43764150:+] 0.5270 145 7 -6.49 -0.9153 MIMAT0004523 mmu-miR-29b* 328234 Rnf182 auuugGUGGUAUACUUUG-GUCg || |||| ||||| ||| auaugCAACAUAGGAAACUCAGc 2 18 4 26 [mm9:13:43764091-43764113:+] 0.5044 133 0 -17.10 -0.5039 MIMAT0000129 mmu-miR-30a* 328234 Rnf182 cgacguuuguaggcuGACUUUc |||||| ggguuuuccuggauuCUGAAAa 2 8 163 184 [mm9:13:43764250-43764271:+] 0.4910 120 6 -7.79 -0.2088 MIMAT0004530 mmu-miR-127* 328234 Rnf182 uaGUCUCGGGAGACUCGAAGUc :|| |:|: | ||||||| acUAGUGUCUAC--AGCUUCAa 2 21 86 105 [mm9:13:43764173-43764192:+] 0.5514 149 7 -13.40 -0.7159 MIMAT0004537 mmu-miR-154* 328234 Rnf182 uuAU-CCAGUUGGC-----ACAUACUAa || | |||| :| |||||||| gcUACGUUCAAAUGAUGUAUGUAUGAUu 2 21 34 61 [mm9:13:43764121-43764148:+] 0.4664 146 7 -12.10 -0.8753 MIMAT0004546 mmu-miR-202-5p 328234 Rnf182 uuucuucaUAUAC---GUAUCCUu ||||| ||||||| -----ucaAUAUGCAACAUAGGAa 2 14 1 19 [mm9:13:43764088-43764106:+] 0.5044 148 7 -13.96 -1.0380 MIMAT0000249 mmu-miR-30e* 328234 Rnf182 cgacauuuguaggcuGACUUUc |||||| ggguuuuccuggauuCUGAAAa 2 8 163 184 [mm9:13:43764250-43764271:+] 0.4910 120 6 -8.58 -0.2088 MIMAT0004631 mmu-miR-29a* 328234 Rnf182 gacuUGUGGUUUUCUUU-AGUCa :|| || |:|||| |||| auauGCAACAUAGGAAACUCAGc 2 19 4 26 [mm9:13:43764091-43764113:+] 0.5044 130 0 -12.37 -0.5073 MIMAT0002107 mmu-miR-466a-3p 328234 Rnf182 agaauacacacgcACAUACAUAu ||||||||| uacguucaaaugaUGUAUGUAUg 2 11 36 58 [mm9:13:43764123-43764145:+] 0.4664 150 7 -13.04 -0.4374 MIMAT0003733 mmu-miR-665 328234 Rnf182 ucccuggagucGGAGGACCa ::|||||| gcuugauggguUUUCCUGGa 2 10 156 175 [mm9:13:43764243-43764262:+] 0.4832 125 6 -15.11 -0.1132 MIMAT0004827 mmu-miR-297b-3p 328234 Rnf182 auacccaUACACACAUACAUAu ||| ||||||||| cguucaaAUG-AUGUAUGUAUg 2 16 38 58 [mm9:13:43764125-43764145:+] 0.4664 153 7 -13.08 -0.4310 MIMAT0004839 mmu-miR-743b-5p 328234 Rnf182 acuaccuguggUCAGACUUgu | |||||| gguuuuccuggAUUCUGAAaa 3 11 164 184 [mm9:13:43764251-43764271:+] 0.4910 122 0 -9.85 -0.1747 MIMAT0004841 mmu-miR-871 328234 Rnf182 guACUGACCGUGA--UUAGACUUau ||: | : || | |||||| gaUGGGUUUUCCUGGAUUCUGAAaa 3 22 160 184 [mm9:13:43764247-43764271:+] 0.4910 124 0 -12.38 -0.1714 MIMAT0004864 mmu-miR-297a* 328234 Rnf182 auacccaUACACACAUACAUAu ||| ||||||||| cguucaaAUG-AUGUAUGUAUg 2 16 38 58 [mm9:13:43764125-43764145:+] 0.4664 153 7 -13.08 -0.4310 MIMAT0004866 mmu-miR-297c* 328234 Rnf182 auacccaUACACACAUACAUAu ||| ||||||||| cguucaaAUG-AUGUAUGUAUg 2 16 38 58 [mm9:13:43764125-43764145:+] 0.4664 153 7 -13.08 -0.4310 MIMAT0004876 mmu-miR-466b-3p 328234 Rnf182 agaauacacacgcACAUACAUAu ||||||||| uacguucaaaugaUGUAUGUAUg 2 11 36 58 [mm9:13:43764123-43764145:+] 0.4664 150 7 -13.04 -0.4374 MIMAT0005453 mmu-miR-466b-3-3p 328234 Rnf182 agaauacacacgcACAUACAUAa ||||||||| uacguucaaaugaUGUAUGUAUg 2 11 36 58 [mm9:13:43764123-43764145:+] 0.4664 150 7 -10.91 -0.4374 MIMAT0004878 mmu-miR-466c-3p 328234 Rnf182 agaauacacacgcACAUACAUAu ||||||||| uacguucaaaugaUGUAUGUAUg 2 11 36 58 [mm9:13:43764123-43764145:+] 0.4664 150 7 -13.04 -0.4374 MIMAT0004880 mmu-miR-466e-3p 328234 Rnf182 agaauacacacgcACAUACAUAu ||||||||| uacguucaaaugaUGUAUGUAUg 2 11 36 58 [mm9:13:43764123-43764145:+] 0.4664 150 7 -13.04 -0.4374 MIMAT0004931 mmu-miR-466d-3p 328234 Rnf182 gauacacacgcACAUACAUAu ||||||||| cguucaaaugaUGUAUGUAUg 2 11 38 58 [mm9:13:43764125-43764145:+] 0.4664 150 7 -13.04 -0.4374 MIMAT0005854 mmu-miR-467g 328234 Rnf182 uauauacacAC-ACAUACAUAu || ||||||||| acguucaaaUGAUGUAUGUAUg 2 13 37 58 [mm9:13:43764124-43764145:+] 0.4664 151 7 -12.62 -0.4342 MIMAT0001533 mmu-miR-448 328234 Rnf182 uacccuguaggaugUAUACGUu ||||||| -----------ucaAUAUGCAa 2 9 1 11 [mm9:13:43764088-43764098:+] 0.5424 140 7 -9.62 -1.0117 MIMAT0004943 mmu-miR-653 328234 Rnf182 guCAUCUCUAACAAAGUUGUg ||: | | ||||||| uaGUGUCUACAGCUUCAACAa 2 20 88 108 [mm9:13:43764175-43764195:+] 0.5514 143 7 -10.05 -0.4309

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G041249 Rnf182 Mus musculus 328234

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf182 mmu-miR-1198 beg:5 end:32 pic:3' GGTTCGGTCGGTCCT------TGTGTAT 5'& || .|||| .|.|||| &5' ----GCAACATAGGAAACTCAGCGCATA 3' Rnf182 mmu-miR-1907 beg:137 end:160 pic:3' TGG--AGGTCTAGGAGACGACGAG 5'& || |||||||..|. |||. &5' -CCTATCCAGATTTTTG---GCTT 3' Rnf182 mmu-miR-1956 beg:155 end:178 pic:3' AGGCG-ACTGAGTCG---GGACCTGA 5'& || |||. .|. ||||||.| &5' ---GCTTGATG-GGTTTTCCTGGATT 3' Rnf182 mmu-miR-1958 beg:54 end:72 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& || ||| |||||.| &5' ------TGATTCTGCTTTCTT- 3' Rnf182 mmu-miR-297astar beg:43 end:59 pic:3' ATACCCATACAC-ACATACATAT 5'& || |||||||||. &5' ----------TGATGTATGTATG 3' Rnf182 mmu-miR-297b-3p beg:43 end:59 pic:3' ATACCCATACAC-ACATACATAT 5'& || |||||||||. &5' ----------TGATGTATGTATG 3' Rnf182 mmu-miR-297cstar beg:43 end:59 pic:3' ATACCCATACAC-ACATACATAT 5'& || |||||||||. &5' ----------TGATGTATGTATG 3' Rnf182 mmu-miR-381 beg:61 end:78 pic:3' TGTCTCTCGAACGGGAACATAT 5'& |||| |..|||||| &5' -------GCTTTCTTTTGTAT- 3' Rnf182 mmu-miR-466a-3p beg:46 end:59 pic:3' AGAATACACACGCACATACATAT 5'& |||||||||. &5' -------------TGTATGTATG 3' Rnf182 mmu-miR-466b-3p beg:46 end:59 pic:3' AGAATACACACGCACATACATAT 5'& |||||||||. &5' -------------TGTATGTATG 3' Rnf182 mmu-miR-466c-3p beg:46 end:59 pic:3' AGAATACACACGCACATACATAT 5'& |||||||||. &5' -------------TGTATGTATG 3' Rnf182 mmu-miR-466d-3p beg:46 end:59 pic:3' GATACACACGCACATACATAT 5'& |||||||||. &5' -----------TGTATGTATG 3' Rnf182 mmu-miR-466e-3p beg:46 end:59 pic:3' AGAATACACACGCACATACATAT 5'& |||||||||. &5' -------------TGTATGTATG 3' Rnf182 mmu-miR-467a-1star beg:36 end:59 pic:3' CACATCCACAC-ACATACATATA 5'& || || |||||||||. &5' --GTTCAAATGATGTATGTATG- 3' Rnf182 mmu-miR-467bstar beg:36 end:59 pic:3' CACAACCACAC-ACATACATATA 5'& ||| || |||||||||. &5' --GTTCAAATGATGTATGTATG- 3' Rnf182 mmu-miR-467dstar beg:36 end:59 pic:3' CACATCCACAC-ACATACATATA 5'& || || |||||||||. &5' --GTTCAAATGATGTATGTATG- 3' Rnf182 mmu-miR-467estar beg:43 end:59 pic:3' TATATCCACAC-ACATACATATA 5'& || |||||||||. &5' ---------TGATGTATGTATG- 3' Rnf182 mmu-miR-467g beg:43 end:59 pic:3' TATATACACAC-ACATACATAT 5'& || |||||||||. &5' ---------TGATGTATGTATG 3' Rnf182 mmu-miR-485star beg:44 end:62 pic:3' CTCTCCTCT-CGGCACATACTGA 5'& || |. |||||||.| &5' -------GATGTA-TGTATGATT 3' Rnf182 mmu-miR-669m beg:36 end:56 pic:3' TATACAAACACACCTACATATA 5'& ||| |||||||.| &5' ----GTTCAAAT-GATGTATGT 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf182 RAID00114380 mmu-miR-6946-3p miRNA MIMAT0027793 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID00162392 mmu-miR-1968-3p miRNA MIMAT0017350 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID00174885 mmu-miR-140-3p miRNA MIMAT0000152 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID00187063 mmu-miR-3059-5p miRNA MIMAT0014811 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID00238173 mmu-miR-1258-3p miRNA MIMAT0029905 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID00314230 mmu-miR-7225-3p miRNA MIMAT0028419 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID00384799 mmu-miR-6988-5p miRNA MIMAT0027878 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID00503651 mmu-miR-7680-5p miRNA MIMAT0029874 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID00638810 mmu-miR-5622-5p miRNA MIMAT0022371 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID01196323 mmu-miR-344b-3p miRNA MIMAT0014926 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID01431081 mmu-miR-703 miRNA MIMAT0003493 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID01658049 mmu-miR-497b miRNA MIMAT0031404 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID01760455 mmu-miR-21a-3p miRNA MIMAT0004628 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID01859819 mmu-miR-448-3p miRNA MIMAT0001533 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID01936615 mmu-miR-421-3p miRNA MIMAT0004869 Rnf182 mRNA 328234 Prediction 0.2202 Rnf182 RAID01969483 mmu-miR-3094-3p miRNA MIMAT0014910 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID02090199 mmu-miR-181d-5p miRNA MIMAT0004324 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID02214288 mmu-miR-7119-3p miRNA MIMAT0028136 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID02344927 mmu-miR-125b-5p miRNA MIMAT0000136 Rnf182 mRNA 328234 RIP-seq//RNA-seq 0.6606 Rnf182 RAID02508624 mmu-miR-124-3p miRNA MIMAT0000134 Rnf182 mRNA 328234 RIP-seq//RNA-seq 0.6606 Rnf182 RAID02536840 mmu-miR-3618-3p miRNA MIMAT0035717 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID02539143 mmu-miR-6926-5p miRNA MIMAT0027752 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID02623263 mmu-miR-7212-3p miRNA MIMAT0028393 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID02652224 mmu-miR-466l-3p miRNA MIMAT0005830 Rnf182 mRNA 328234 Prediction 0.2202 Rnf182 RAID02927914 mmu-miR-127-5p miRNA MIMAT0004530 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID02945978 mmu-miR-7090-5p miRNA MIMAT0028086 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID02971340 mmu-miR-194-2-3p miRNA MIMAT0017073 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID03102483 mmu-miR-551b-5p miRNA MIMAT0017236 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID03234605 mmu-miR-7055-5p miRNA MIMAT0028014 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID03258613 mmu-miR-5616-5p miRNA MIMAT0022359 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID03280394 mmu-miR-7013-3p miRNA MIMAT0027931 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID03334759 mmu-miR-125a-5p miRNA MIMAT0000135 Rnf182 mRNA 328234 RIP-seq//RNA-seq 0.6606 Rnf182 RAID03554515 mmu-miR-377-3p miRNA MIMAT0000741 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID03612595 mmu-miR-6951-5p miRNA MIMAT0027802 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID03734954 mmu-miR-669n miRNA MIMAT0009427 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID03770106 mmu-miR-717 miRNA MIMAT0003510 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID03882307 mmu-miR-485-3p miRNA MIMAT0003129 Rnf182 mRNA 328234 Prediction 0.1828 Rnf182 RAID04013229 mmu-miR-653-5p miRNA MIMAT0004943 Rnf182 mRNA 328234 Prediction 0.1828