DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT586494 mmu-miR-185-5p Mus musculus Nhlrc1 105193 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT586493 mmu-miR-882 Mus musculus Nhlrc1 105193 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT586492 mmu-miR-3473a Mus musculus Nhlrc1 105193 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 105193 Nhlrc1 aucucgucgUUUAUUACUAAGc |||| :|||||| uguaauuugAAAU-GUGAUUCa 2 14 962 982 [mm9:13:47107961-47107981:-] 0.5050 135 6 -7.49 -0.1133 MIMAT0000137 mmu-miR-126-5p 105193 Nhlrc1 gcgCAUGGUUUUC--AUUAUUAc || ::||||| ||||||| gcaGUUUUAAAAGACUAAUAAUu 2 19 114 136 [mm9:13:47108807-47108829:-] 0.5392 161 7 -10.02 -0.7694 MIMAT0004530 mmu-miR-127* 105193 Nhlrc1 uagUCUCGGGAGACUCG-AAGUc | || || | |||| |||| aagACAGACC-CAGAGCAUUCAg 2 20 254 275 [mm9:13:47108668-47108689:-] 0.5348 121 0 -23.33 -0.6501 MIMAT0003473 mmu-miR-133a* 105193 Nhlrc1 uaAACCAAGGUAAAAUGGUCg | | | | | ||||||| agUAGAUAGCUUAUUACCAGu 2 20 528 548 [mm9:13:47108395-47108415:-] 0.5200 147 7 -10.30 -0.7070 MIMAT0004574 mmu-miR-294* 105193 Nhlrc1 ucuaucccggaggUAAAACUCa |||||||| uagcuaccuaguaAUUUUGAGg 2 10 677 698 [mm9:13:47108245-47108266:-] 0.5003 145 7 -13.52 -0.3505 MIMAT0004575 mmu-miR-295* 105193 Nhlrc1 cuucacacggggugUAAACUCa ||||||| aucccgcagugauaAUUUGAGa 2 9 788 809 [mm9:13:47108134-47108155:-] 0.5003 140 7 -15.88 -0.5810 MIMAT0000605 mmu-miR-350 105193 Nhlrc1 cuuucACAUACCCGAAACACUu || | | |||||||| acgccUG-AAGCACUUUGUGAu 2 18 926 946 [mm9:13:47107997-47108017:-] 0.5033 147 7 -10.73 -0.1481 MIMAT0004670 mmu-miR-7a* 105193 Nhlrc1 auACCGUCUGACACU-AAACAAc ||||||| |||| |||||| gaUGGCAGA-AGUGAUUUUGUUu 2 21 887 908 [mm9:13:47108035-47108056:-] 0.5017 142 6 -22.84 -0.1448 MIMAT0004691 mmu-miR-382* 105193 Nhlrc1 uuUUUCACAACAGG-CACUUACu || ||| |:| ||||||| uaAAUUUGUCAUUCGGUGAAUGc 2 21 136 158 [mm9:13:47108785-47108807:-] 0.5417 155 7 -13.30 -0.3425 MIMAT0002107 mmu-miR-466a-3p 105193 Nhlrc1 agaAUACACACGCACAUACAUAu |:||| | : ||||||||| agcUGUGUCU-UAUGUAUGUAUg 2 21 386 407 [mm9:13:47108536-47108557:-] 0.5348 162 7 -16.39 -0.3967 MIMAT0002111 mmu-miR-470 105193 Nhlrc1 ugaguGGUCACGGUC-AGGUUCUu ::| | |||| ||||||| auagcUUAUUACCAGUUCCAAGAu 2 19 533 556 [mm9:13:47108387-47108410:-] 0.5200 157 7 -22.37 -0.9051 MIMAT0004760 mmu-miR-470* 105193 Nhlrc1 agAAGAGUCUU--UCCA-UGACCAa | ||:| || :||| |||||| ucUCCUUACAAGUGGGUAACUGGUa 2 21 409 433 [mm9:13:47108510-47108534:-] 0.5348 127 6 -16.98 -0.6562 MIMAT0003376 mmu-miR-302c 105193 Nhlrc1 gguGACUUUGUACCUUCGUGAa |||| :| | |||||||| ucuCUGACGCCU-GAAGCACUu 2 20 920 940 [mm9:13:47108003-47108023:-] 0.5033 161 7 -18.66 -0.2216 MIMAT0004187 mmu-miR-744 105193 Nhlrc1 acgacAAUCGGGAUCGGGG-CGu |||| :|| ||||| || guuaaUUAGAUCUUGCCCCAGCa 2 18 860 882 [mm9:13:47108061-47108083:-] 0.4992 129 0 -21.56 -0.3973 MIMAT0004823 mmu-miR-666-3p 105193 Nhlrc1 ucguccGCUA-GUGCGACGUCGg | || || ||||||| gaaguuCAAUGCAAUCUGCAGCu 2 17 654 676 [mm9:13:47108267-47108289:-] 0.5003 147 7 -14.89 -0.3977 MIMAT0003739 mmu-miR-673-5p 105193 Nhlrc1 gaGGUUCCUGGUCUCGACACUc ||| |: |||||||| guCCAUCACCUUCAGCUGUGAg 2 21 491 512 [mm9:13:47108431-47108452:-] 0.5274 148 7 -25.61 -0.1762 MIMAT0003898 mmu-miR-760 105193 Nhlrc1 aggggUGUCUGG--GUCUCGGc | | |:| ||||||| uugagAAAAAUCUGCAGAGCCa 2 16 804 825 [mm9:13:47108118-47108139:-] 0.4985 142 7 -14.86 -0.4844 MIMAT0003741 mmu-miR-674* 105193 Nhlrc1 aacaagacucuACCCUCGACAc || ||||||| acaacaaaaacUGUGAGCUGUg 2 12 371 392 [mm9:13:47108551-47108572:-] 0.5348 147 7 -16.73 -0.7422 MIMAT0004827 mmu-miR-297b-3p 105193 Nhlrc1 auACCCAUACACACAUACAUAu || || | | ||||||||| gcUGUGUCU-UAUGUAUGUAUg 2 21 387 407 [mm9:13:47108536-47108556:-] 0.5348 162 7 -13.96 -0.3998 MIMAT0004845 mmu-miR-881* 105193 Nhlrc1 ucuaCACUGACAAUAGAGAGAc ||| |||| ||||||| acuaGUG--UGUUCUCUCUCUc 2 19 708 727 [mm9:13:47108216-47108235:-] 0.5003 159 7 -15.97 -0.1891 MIMAT0004864 mmu-miR-297a* 105193 Nhlrc1 auACCCAUACACACAUACAUAu || || | | ||||||||| gcUGUGUCU-UAUGUAUGUAUg 2 21 387 407 [mm9:13:47108536-47108556:-] 0.5348 162 7 -13.96 -0.3998 MIMAT0004866 mmu-miR-297c* 105193 Nhlrc1 auACCCAUACACACAUACAUAu || || | | ||||||||| gcUGUGUCU-UAUGUAUGUAUg 2 21 387 407 [mm9:13:47108536-47108556:-] 0.5348 162 7 -13.96 -0.3998 MIMAT0004876 mmu-miR-466b-3p 105193 Nhlrc1 agaAUACACACGCACAUACAUAu |:||| | : ||||||||| agcUGUGUCU-UAUGUAUGUAUg 2 21 386 407 [mm9:13:47108536-47108557:-] 0.5348 162 7 -16.39 -0.3967 MIMAT0005453 mmu-miR-466b-3-3p 105193 Nhlrc1 agaAUACACACGCACAUACAUAa |:||| | : ||||||||| agcUGUGUCU-UAUGUAUGUAUg 2 21 386 407 [mm9:13:47108536-47108557:-] 0.5348 162 7 -14.26 -0.3967 MIMAT0004878 mmu-miR-466c-3p 105193 Nhlrc1 agaAUACACACGCACAUACAUAu |:||| | : ||||||||| agcUGUGUCU-UAUGUAUGUAUg 2 21 386 407 [mm9:13:47108536-47108557:-] 0.5348 162 7 -16.39 -0.3967 MIMAT0004880 mmu-miR-466e-3p 105193 Nhlrc1 agaAUACACACGCACAUACAUAu |:||| | : ||||||||| agcUGUGUCU-UAUGUAUGUAUg 2 21 386 407 [mm9:13:47108536-47108557:-] 0.5348 162 7 -16.39 -0.3967 MIMAT0004931 mmu-miR-466d-3p 105193 Nhlrc1 gauACACA-CGCACAUACAUAu ||||| : ||||||||| agcUGUGUCUUAUGUAUGUAUg 2 19 386 407 [mm9:13:47108536-47108557:-] 0.5348 161 7 -18.95 -0.3967 MIMAT0004861 mmu-miR-877 105193 Nhlrc1 ggGACGCGGUAG-AGGAGAUg || : :| || ||||||| ccCUCUUUCUUCUUCCUCUAu 2 19 753 773 [mm9:13:47108170-47108190:-] 0.5003 149 7 -19.35 -0.2771 MIMAT0005834 mmu-miR-466i 105193 Nhlrc1 auCACACAUACACA-CACA-CAUa ||| | ||| | |||| ||| aaGUGAUUUUGUUUGGUGUGGUAa 2 21 895 918 [mm9:13:47108025-47108048:-] 0.5017 123 0 -16.46 -0.4544 MIMAT0005847 mmu-miR-1190 105193 Nhlrc1 cugucuccccUUGGAGUCGACu | |:||||||| guuguccaucACCUUCAGCUGu 2 13 488 509 [mm9:13:47108434-47108455:-] 0.5274 148 7 -15.70 -0.2201 MIMAT0005849 mmu-miR-1191 105193 Nhlrc1 aucccgauguaucaUUCUGAc |||||| uaaggcaguuuuaaAAGACUa 2 8 110 130 [mm9:13:47108813-47108833:-] 0.5392 120 6 -8.87 -0.1451 MIMAT0005854 mmu-miR-467g 105193 Nhlrc1 uauAUACA-CACACAUACAUAu |:||| | ||||||||| agcUGUGUCUUAUGUAUGUAUg 2 19 386 407 [mm9:13:47108536-47108557:-] 0.5348 161 7 -15.83 -0.3967 MIMAT0005855 mmu-miR-467h 105193 Nhlrc1 ugUAUAUGUACGUGUGUGA-AUa ||:|: || || ||||| || aaAUGUG-AUUCAAACACUGUAc 2 21 971 992 [mm9:13:47107951-47107972:-] 0.5050 126 0 -8.54 -0.9671 MIMAT0007868 mmu-miR-1903 105193 Nhlrc1 acaGAGUCCU-UCUUCUUCU-UCc ||::||| | :|||||| || ccaCUUGGGAGAUGAGAAGACAGa 2 20 238 261 [mm9:13:47108682-47108705:-] 0.5237 130 0 -18.23 -0.1987 MIMAT0007871 mmu-miR-1892 105193 Nhlrc1 uaggagggagggcaGGGGUUUa ||||||| ucagcugugagcucCCCCAAAg 2 9 502 523 [mm9:13:47108420-47108441:-] 0.5200 140 7 -14.28 -0.1437 MIMAT0007872 mmu-miR-1906 105193 Nhlrc1 ucgggaCGGAGUCCGACGA-CGu ||| | | ||||| || ugcagaGCCACUGCCUGCUAGCg 2 17 816 838 [mm9:13:47108105-47108127:-] 0.4985 120 0 -21.80 -0.1387 MIMAT0007874 mmu-miR-1904 105193 Nhlrc1 ggaGGGAGGUC--UCCUC-GUCUUg :||| || ||||| ||||| ggaUCCUGAAGCCAGGAGUCAGAAa 2 20 4 28 [mm9:13:47108915-47108939:-] 0.5379 126 0 -21.40 -0.6523 MIMAT0007876 mmu-miR-1907 105193 Nhlrc1 ugGAGGUCUAGGAGAC-GACGAg || |||| || ||| ||||| auCUGCAGAGCCACUGCCUGCUa 2 21 813 835 [mm9:13:47108108-47108130:-] 0.4985 140 0 -24.91 -0.2214 MIMAT0007878 mmu-miR-1894-3p 105193 Nhlrc1 gaGGGAAGUGGGAGAGG-GAACg ||: |:|:|| ||| |||| uuCCUAUUAUCC-GUCCACUUGg 2 21 224 245 [mm9:13:47108698-47108719:-] 0.5125 122 0 -21.97 -0.2376 MIMAT0009393 mmu-miR-1930 105193 Nhlrc1 ugcgacguccAUGAUACCUCCa |:: ||||||| ugaagcacuuUGUGAUGGAGGc 2 13 931 952 [mm9:13:47107991-47108012:-] 0.5050 144 7 -15.76 -0.1444 MIMAT0009425 mmu-miR-1954 105193 Nhlrc1 uugucccagaGUGAGACGUCa || ||||||| aaguucaaugCAAUCUGCAGc 2 12 655 675 [mm9:13:47108268-47108288:-] 0.5003 147 7 -13.66 -0.1678 MIMAT0009425 mmu-miR-1954 105193 Nhlrc1 uugucccagagUGAGACGUCa | ||||||| aauuugagaaaAAUCUGCAGa 2 11 801 821 [mm9:13:47108122-47108142:-] 0.4985 142 7 -11.02 -0.6452 MIMAT0009426 mmu-miR-1955 105193 Nhlrc1 uuUUCGACGUCACGUAGGACCCUGa :||:||:| | || ||||||| uaGAGUUGUA-UUCA--CUGGGACa 2 24 287 308 [mm9:13:47108635-47108656:-] 0.5348 158 7 -22.81 -0.8733 MIMAT0009431 mmu-miR-1958 105193 Nhlrc1 ugaaugacgaagGUGAAAGGAu | ||||||| aacaaaguugagCUCUUUCCUu 2 11 567 588 [mm9:13:47108355-47108376:-] 0.5200 142 7 -13.16 -0.7077 MIMAT0009432 mmu-miR-1959 105193 Nhlrc1 gagGUGACUCGAUG-UAGGGg |||||:| || ||||| gggCACUGGG-AACUAUCCCg 2 18 774 793 [mm9:13:47108150-47108169:-] 0.5003 123 0 -21.95 -0.3515 MIMAT0009455 mmu-miR-1983 105193 Nhlrc1 ucUUUUG--UACGA-GGUCC-ACUc ||::| | ||| ||||| ||| auAAGGCAAAGGCUGCCAGGAUGAu 2 20 589 613 [mm9:13:47108330-47108354:-] 0.5101 121 0 -18.28 -0.1206 MIMAT0012774 mmu-miR-664 105193 Nhlrc1 auCCGACCCCUCAUUUAC-UUAu ||| || : | |||| ||| gaGGCAGGAAGUUCAAUGCAAUc 2 21 647 669 [mm9:13:47108274-47108296:-] 0.5003 120 0 -12.36 -0.2341 MIMAT0015645 mmu-miR-3473 105193 Nhlrc1 ccgacucGGUAGAGAGGu || ||||||| uuucucuCCCUCUCUCCc 2 12 736 753 [mm9:13:47108190-47108207:-] 0.5003 147 7 -14.62 -0.1137 MIMAT0015645 mmu-miR-3473 105193 Nhlrc1 ccgacucGGUAGAGAGGu |: ||||||| guguucuCUCUCUCUCCc 2 12 714 731 [mm9:13:47108212-47108229:-] 0.5003 143 7 -12.43 -0.1985 MIMAT0015645 mmu-miR-3473 105193 Nhlrc1 ccgacucGGUAGAGAGGu |: ||||||| ucccucuCUUUCUCUCCc 2 12 728 745 [mm9:13:47108198-47108215:-] 0.5003 143 7 -12.04 -0.4633 MIMAT0000125 mmu-miR-23b 105193 Nhlrc1 ccAUUAGGGACCGUUACACUa |||| | | ||||||| ugUAAU---UUGAAAUGUGAu 2 20 962 979 [mm9:13:47107964-47107981:-] 0.5050 147 7 -12.89 -0.8175 MIMAT0000126 mmu-miR-27b 105193 Nhlrc1 cgucuugaaucggUGACACUu ||||||| aacaacaacaaaaACUGUGAg 2 9 367 387 [mm9:13:47108556-47108576:-] 0.5348 140 7 -12.16 -0.6345 MIMAT0000150 mmu-miR-138 105193 Nhlrc1 gcCGGACUAAGUGUUGUG-GUCGa |::|| ||| :||||| |||| cuGUUUGCUUCUUAACACACAGCg 2 22 193 216 [mm9:13:47108727-47108750:-] 0.5361 141 0 -20.37 -0.7077 MIMAT0000151 mmu-miR-140 105193 Nhlrc1 gaugguaucccauUUUGGUGAc |||||||| caguucuggcuccAAACCACUu 2 10 317 338 [mm9:13:47108605-47108626:-] 0.5348 145 7 -12.26 -0.3733 MIMAT0000160 mmu-miR-150 105193 Nhlrc1 guGACCAUGUUCCCAACCCUCu :||||:: | ||||||| ucUUGGUGUCA---UUGGGAGu 2 21 29 47 [mm9:13:47108896-47108914:-] 0.5367 148 7 -18.01 -0.3183 MIMAT0000160 mmu-miR-150 105193 Nhlrc1 gugaccauguucccAACCCUCu ||||||| uauuauccguccacUUGGGAGa 2 9 228 249 [mm9:13:47108694-47108715:-] 0.5125 140 7 -14.03 -0.3321 MIMAT0000213 mmu-miR-184 105193 Nhlrc1 ugggAAUAGUCAAGAGGCAGGu || :| || ||||||| uuaaUUCCUA-UUAUCCGUCCa 2 19 220 240 [mm9:13:47108703-47108723:-] 0.5243 148 7 -20.04 -0.9965 MIMAT0000214 mmu-miR-185 105193 Nhlrc1 aguccuuGACGGAAAGAGAGGu || :|||||||||| ucucuccCUCUCUUUCUCUCCc 2 16 724 745 [mm9:13:47108198-47108219:-] 0.5003 163 7 -19.27 -0.4633 MIMAT0000214 mmu-miR-185 105193 Nhlrc1 agUC-CUUGACGGAAAGAGAGGu || | ::| :|| ||||||| cuAGUGUGUUCUCUCUCUCUCCc 2 21 709 731 [mm9:13:47108212-47108234:-] 0.5003 155 7 -16.42 -0.1985 MIMAT0000237 mmu-miR-204 105193 Nhlrc1 uccguAUCCUACUGUUUCCCUu ||||| || ||||||| gauuuUAGGA-GA-AAAGGGAa 2 18 468 487 [mm9:13:47108456-47108475:-] 0.5348 157 7 -18.12 -0.7069 MIMAT0000368 mmu-miR-291a-3p 105193 Nhlrc1 cguguguuucacCUUCGUGAAa ||||||||| ucucugacgccuGAAGCACUUu 2 11 920 941 [mm9:13:47108002-47108023:-] 0.5033 150 7 -15.61 -0.2963 MIMAT0000372 mmu-miR-294 105193 Nhlrc1 uguguguuuuccCUUCGUGAAa ||||||||| ucucugacgccuGAAGCACUUu 2 11 920 941 [mm9:13:47108002-47108023:-] 0.5033 150 7 -15.61 -0.3014 MIMAT0000373 mmu-miR-295 105193 Nhlrc1 ucuGAGUUUUC-AUCAUCGUGAAa ||| :| | | ||||||| aauCUCUGACGCCUGAAGCACUUu 2 21 918 941 [mm9:13:47108002-47108025:-] 0.5033 147 7 -12.59 -0.2963 MIMAT0000380 mmu-miR-302a 105193 Nhlrc1 aguGGUUUUGUACCUUCGUGAAu |::| :| | ||||||||| ucuCUGACGCCU-GAAGCACUUu 2 21 920 941 [mm9:13:47108002-47108023:-] 0.5033 158 7 -17.13 -0.2963 MIMAT0000385 mmu-miR-106a 105193 Nhlrc1 gauGGAC-GU-GACAAUCGUGAAAc :||| |: ||| |||||||| aucUCUGACGCCUG-AAGCACUUUg 2 21 919 942 [mm9:13:47108001-47108024:-] 0.5033 152 7 -21.98 -0.3281 MIMAT0000386 mmu-miR-106b 105193 Nhlrc1 uaGAC-GU-GACAGUCGUGAAAu ||| |: ||| |||||||| cuCUGACGCCUG-AAGCACUUUg 2 20 921 942 [mm9:13:47108001-47108022:-] 0.5033 151 7 -20.31 -0.3281 MIMAT0000529 mmu-miR-20a 105193 Nhlrc1 gauGGAC-GUGAUAUUCGUGAAAu :||| |:| ||||||||| aucUCUGACGCCUGAAGCACUUUg 2 21 919 942 [mm9:13:47108001-47108024:-] 0.5033 159 7 -20.78 -0.3308 MIMAT0000532 mmu-miR-23a 105193 Nhlrc1 ccuuuaggGACCGUUACACUa :| | ||||||| cuguguaaUUUGAAAUGUGAu 2 14 959 979 [mm9:13:47107964-47107984:-] 0.5050 145 7 -11.23 -0.8175 MIMAT0000537 mmu-miR-27a 105193 Nhlrc1 cgccuugaaucggUGACACUu ||||||| aacaacaacaaaaACUGUGAg 2 9 367 387 [mm9:13:47108556-47108576:-] 0.5348 140 7 -11.88 -0.6345 MIMAT0000538 mmu-miR-31 105193 Nhlrc1 guCGAUACGGUCGUAGAACGGa |:|| ::|| |||||||| guGUUA-AUUAG-AUCUUGCCc 2 21 858 877 [mm9:13:47108066-47108085:-] 0.4992 152 7 -16.58 -0.4406 MIMAT0000540 mmu-miR-93 105193 Nhlrc1 gauGGAC-GUGCUUGUCGUGAAAc :||| |:| : |||||||| aucUCUGACGCCUGAAGCACUUUg 2 21 919 942 [mm9:13:47108001-47108024:-] 0.5033 155 7 -22.06 -0.3254 MIMAT0000559 mmu-miR-326 105193 Nhlrc1 ugAC-CUCCUUCCCGGGUCUCc || || || | ||||||| gaUGAGAAGACAGACCCAGAGc 2 20 248 269 [mm9:13:47108674-47108695:-] 0.5237 154 7 -16.68 -0.5411 MIMAT0004642 mmu-miR-330 105193 Nhlrc1 cggAUUC-UGUGUCCGGGUCUCu |:|| | |||| ||||||| agaUGAGAAGACAGACCCAGAGc 2 20 247 269 [mm9:13:47108674-47108696:-] 0.5237 166 7 -24.94 -0.5340 MIMAT0000649 mmu-miR-17 105193 Nhlrc1 gauGGAC-GU-GACAUUCGUGAAAc :||| |: ||| ||||||||| aucUCUGACGCCUG-AAGCACUUUg 2 21 919 942 [mm9:13:47108001-47108024:-] 0.5033 160 7 -24.37 -0.3281 MIMAT0000667 mmu-miR-33 105193 Nhlrc1 acguuaCGUUGAUGUUACGUg | || | ||||||| gaggcaGGAAGUUCAAUGCAa 2 16 647 667 [mm9:13:47108276-47108296:-] 0.5003 151 7 -16.41 -0.8847 MIMAT0000668 mmu-miR-211 105193 Nhlrc1 uccguuUCCUACUGUUUCCCUu |||| || ||||||| gauuuuAGGA-GA-AAAGGGAa 2 17 468 487 [mm9:13:47108456-47108475:-] 0.5348 152 7 -17.41 -0.7106 MIMAT0004750 mmu-miR-425 105193 Nhlrc1 aguuGCCCUCACUAGCACAGUAa | | | | | ||||||| gaguCAGAAAUCUUGGUGUCAUu 2 20 19 41 [mm9:13:47108902-47108924:-] 0.5367 147 7 -12.46 -0.1280 MIMAT0003112 mmu-miR-489 105193 Nhlrc1 cgaCGGUAUAUA-CACCACAGUAa |:|| | || ||||||||| ggaGUCAGAAAUCUUGGUGUCAUu 2 21 18 41 [mm9:13:47108902-47108925:-] 0.5367 163 7 -19.36 -0.1268 MIMAT0003182 mmu-miR-494 105193 Nhlrc1 cuccAAAGGGCACAUACAA-AGu || : : |||||||| || ugucUUAUGUAUGUAUGUUCUCc 2 19 391 413 [mm9:13:47108530-47108552:-] 0.5348 122 0 -10.03 -0.8423 MIMAT0003187 mmu-miR-20b 105193 Nhlrc1 gauGGAC-GUGAUAC-UCGUGAAAc :||| |:| || |||||||| aucUCUGACGC-CUGAAGCACUUUg 2 21 919 942 [mm9:13:47108001-47108024:-] 0.5033 152 7 -21.44 -0.3308 MIMAT0003374 mmu-miR-302b 105193 Nhlrc1 gauGAUUUUGUACCUUCGUGAAu ||:| :| | ||||||||| ucuCUGACGCCU-GAAGCACUUu 2 21 920 941 [mm9:13:47108002-47108023:-] 0.5033 162 7 -17.51 -0.2963 MIMAT0003377 mmu-miR-302d 105193 Nhlrc1 uguGAGUUUGU-ACCUUCGUGAAu ||| :||: ||||||||| aauCUCUGACGCCUGAAGCACUUu 2 21 918 941 [mm9:13:47108002-47108025:-] 0.5033 159 7 -19.93 -0.2963 MIMAT0004847 mmu-miR-882 105193 Nhlrc1 ugAUUACGC--GAUUGAGAGAGGa ||:||:| || |||||||| acUAGUGUGUUCUCUCUCUCUCCc 2 21 708 731 [mm9:13:47108212-47108235:-] 0.5003 163 7 -29.08 -0.1949 MIMAT0004847 mmu-miR-882 105193 Nhlrc1 ugauuACGCGAUUGAGAGAGGa | | || |||||||| ucucuUUCUCUCCCUCUCUCCc 2 18 732 753 [mm9:13:47108190-47108211:-] 0.5003 153 7 -16.33 -0.1114 MIMAT0004855 mmu-miR-876-3p 105193 Nhlrc1 acUUAA-UGAA-AC--A--UUUGGUGAu |||| | || || | |||||||| ugAAUUCAGUUCUGGCUCCAAACCACUu 2 21 311 338 [mm9:13:47108605-47108632:-] 0.5348 148 7 -13.25 -0.3733 MIMAT0004943 mmu-miR-653 105193 Nhlrc1 gucAUCUCUA-ACAAAG-UUGUg | || || || ||| |||| aauUUGAAAUGUGAUUCAAACAc 2 19 965 987 [mm9:13:47107956-47107978:-] 0.5050 121 0 -7.62 -0.6727

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G069484 Nhlrc1 Mus musculus 105193

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Nhlrc1 mmu-miR-204 beg:470 end:487 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& ||||| || |||||||| &5' -----TAGGA-GA-AAAGGGAA 3' Nhlrc1 mmu-miR-211 beg:471 end:487 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& |||| || |||||||| &5' ------AGGA-GA-AAAGGGAA 3' Nhlrc1 mmu-miR-876-3p beg:322 end:338 pic:3' ACTTAATGAAACATTTGGTGAT 5'& .|| |||||||| &5' ------GCTCC--AAACCACT- 3' Nhlrc1 mmu-miR-23b beg:960 end:980 pic:3' CCATTAGGGACCGTTACACTA 5'& |||||. || |||||||| &5' -GTAATT--TGA-AATGTGAT 3' Nhlrc1 mmu-miR-291a-3p beg:923 end:942 pic:3' CGTGTGTTTCACCTTCGTGAAA 5'& ||.| |||||||||| &5' --ACGCCT----GAAGCACTTT 3' Nhlrc1 mmu-miR-294 beg:923 end:942 pic:3' TGTGTGTTTTCCCTTCGTGAAA 5'& ||.| |||||||||| &5' --ACGCCT----GAAGCACTTT 3' Nhlrc1 mmu-miR-302a beg:924 end:941 pic:3' AGTGGTTTTGTACCTTCGTGAAT 5'& |.|| ||||||||| &5' -CGCCT-------GAAGCACTT- 3' Nhlrc1 mmu-miR-33 beg:657 end:676 pic:3' ACGTTACGTT-GATGTTACGTG 5'& |||||||| ||.|| || &5' --CAATGCAATCTGCA--GC-- 3' Nhlrc1 mmu-miR-449c beg:814 end:832 pic:3' GGTCGATCGTTAC-GTGACGGA 5'& |||. | |||||||| &5' -------GCAGAGCCACTGCCT 3' Nhlrc1 mmu-miR-882 beg:705 end:731 pic:3' TGATTACGCGATT--GAGAGAGGA 5'& ||||.||.|.| |||||||| &5' ACTAGTGTGTTCTCTCTCTCTCC- 3' Nhlrc1 mmu-miR-882 beg:738 end:753 pic:3' TGATTACGCGATTGAGAGAGGA 5'& || |||||||| &5' ---------CTCCCTCTCTCC- 3' Nhlrc1 mmu-miR-1955 beg:290 end:308 pic:3' TTTTCGACGTCACGTAG-GACCCTGA 5'& |.||.| || ||||||| &5' ----GTTGTAT----TCACTGGGAC- 3' Nhlrc1 mmu-miR-1958 beg:570 end:588 pic:3' TGAATGACGAA--GGTGAAAGGAT 5'& |.| |. ||||||| &5' -------GTTGAGCT-CTTTCCT- 3' Nhlrc1 mmu-miR-674star beg:379 end:393 pic:3' AACAAGACTCTACCCTCGACAC 5'& || |||||||| &5' -----------TGTGAGCTGTG 3' Nhlrc1 mmu-miR-382star beg:139 end:158 pic:3' TTTTTCACAACAGG----CACTTACT 5'& ||||| ||||||| &5' --------TTGTCATTCGGTGAATG- 3' Nhlrc1 mmu-miR-489 beg:29 end:42 pic:3' CGACGGTATATACACCACAGTAA 5'& |||||||||| &5' -------------TGGTGTCATT 3' Nhlrc1 mmu-miR-425 beg:34 end:57 pic:3' AGTTGCCCTCAC-TAGCACAGTAA 5'& ||| .||||||| ||.| ||| &5' TCATTGGGAGTGAATTG-GTC--- 3' Nhlrc1 mcmv-miR-m01-1 beg:395 end:416 pic:3' GGCAAGC-TGCA-ATAAGAGGAGA 5'& .| |.|| |.|||||||. &5' -----TGTATGTATGTTCTCCTT- 3' Nhlrc1 mcmv-miR-m108-1 beg:8 end:29 pic:3' GCTGTGC-TCGGTGG-CAGTCTTT 5'& | ||||| |||||||| &5' ------GAAGCCAGGAGTCAGAAA 3' Nhlrc1 mmu-miR-106a beg:919 end:943 pic:3' GATGGAC-GT-GACAATCGTGAAAC 5'& .||| |. ||| ||||||||| &5' ---TCTGACGCCTGA-AGCACTTTG 3' Nhlrc1 mmu-miR-106b beg:919 end:943 pic:3' TAGAC-GT-GACAGTCGTGAAAT 5'& |||| |. ||| ||||||||. &5' -TCTGACGCCTGA-AGCACTTTG 3' Nhlrc1 mmu-miR-1188 beg:867 end:887 pic:3' AGGACCGGGTTGGAGTGTGGT 5'& ||.|| ||||.| |||.. &5' TCTTGCCCCAGC---ACATT- 3' Nhlrc1 mmu-miR-1190 beg:495 end:509 pic:3' CTGTCTCCCCTTGG-AGTCGACT 5'& ||| ||||||| &5' -----------ACCTTCAGCTG- 3' Nhlrc1 mmu-miR-1197 beg:380 end:398 pic:3' TCTTCATCTGGTACACAGGAT 5'& || || | ||||||.|| &5' ----GT-GAGC-TGTGTCTTA 3' Nhlrc1 mmu-miR-1197 beg:698 end:721 pic:3' TCTTC-ATCTGGT-ACACAGGAT 5'& ||| |.|||.| |||||.|| &5' --AAGCTGGACTAGTGTGTTCT- 3' Nhlrc1 mmu-miR-1224 beg:738 end:758 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& |||| .|||.|| |||| &5' CTCCCTCTCTCCC--CCTC-- 3' Nhlrc1 mmu-miR-129-5p beg:871 end:898 pic:3' CGTTCGGGT--------CTGGCGTTTTTC 5'& |||| ||. |||.||. &5' ----GCCCCAGCACATTGATGGCAGAAG- 3' Nhlrc1 mmu-miR-1-2-as beg:384 end:406 pic:3' ACCTT-ACATTTCTT-CATACAT 5'& ||. |||. ||||||| &5' --GAGCTGTGTCTTATGTATGTA 3' Nhlrc1 mmu-miR-1306 beg:491 end:514 pic:3' GTAGTGGTGGTCT-CGGTTGCA 5'& ||||||| .||| |. |.| &5' CATCACCTTCAGCTGTGAGC-- 3' Nhlrc1 mmu-miR-136 beg:929 end:951 pic:3' GGTAGTAGTTTTGT------TTACCTCA 5'& .||.|| .|||||| &5' --------GAAGCACTTTGTGATGGAG- 3' Nhlrc1 mmu-miR-145 beg:688 end:710 pic:3' TCCCTAAGGAC-CCT-TTTGACCTG 5'& |..|| || ||.|||||| &5' ------TTTTGAGGCTAAGCTGGAC 3' Nhlrc1 mmu-miR-145star beg:636 end:657 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||. |||. |||||| &5' ---GAGAAGTGGAGGCAGGAA- 3' Nhlrc1 mmu-miR-146a beg:302 end:324 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& .|| .| |||||||||||| &5' GACA-GTTGAATTCAGTTCT-- 3' Nhlrc1 mmu-miR-146b beg:304 end:324 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& | .| |||||||||||| &5' ---CAGTTGAATTCAGTTCT-- 3' Nhlrc1 mmu-miR-149 beg:0 end:27 pic:3' CCCTC--ACTTCTGTGCCTCGGTCT 5'& |||| ||||| || ||||.|||| &5' GGGATCCTGAAGCCA-GGAGTCAGA 3' Nhlrc1 mmu-miR-150 beg:239 end:250 pic:3' GTGACCATGTTCCCAACCCTCT 5'& |||||||| &5' --------------TTGGGAGA 3' Nhlrc1 mmu-miR-150 beg:28 end:47 pic:3' GTGACCAT-GTTCCCAACCCTCT 5'& .||||. || ||||||| &5' --TTGGTGTCA----TTGGGAG- 3' Nhlrc1 mmu-miR-150star beg:598 end:626 pic:3' GATAGGGGGTCC-------GGACATGGTC 5'& |. ||||| . |||.|||| &5' ----CTGCCAGGATGATAGTGTGTGCCAG 3' Nhlrc1 mmu-miR-151-5p beg:700 end:724 pic:3' TGATCTGA-CACTCGAG-GAGCT 5'& .||.|||| ||| |.|| ||| &5' GCTGGACTAGTGTGTTCTCTC-- 3' Nhlrc1 mmu-miR-17 beg:919 end:943 pic:3' GATGGAC-GT-GACATTCGTGAAAC 5'& .||| |. ||| |||||||||| &5' ---TCTGACGCCTG-AAGCACTTTG 3' Nhlrc1 mmu-miR-181b beg:293 end:316 pic:3' TGGGTGG--CTGTCGTTACTTACAA 5'& |..|||. |||||. ||||| &5' ATTCACTGGGACAGT--TGAAT--- 3' Nhlrc1 mmu-miR-183 beg:22 end:41 pic:3' TCACTTAAGATGGTCACGGTAT 5'& ||| ||| .|||.||| &5' ---GAAATCTT--GGTGTCAT- 3' Nhlrc1 mmu-miR-185 beg:728 end:745 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& || .|||||||||| &5' -------CTCTCTTTCTCTCC- 3' Nhlrc1 mmu-miR-1892 beg:735 end:755 pic:3' TAG-GAGGGAGGGCAGGGGTTTA 5'& || |||||||.| ||||| &5' -TCTCTCCCTCTC-TCCCC---- 3' Nhlrc1 mmu-miR-1894-3p beg:724 end:747 pic:3' GAGGGA-AGTGGGAGAGGGAACG 5'& |||||| || ..|||||||| &5' CTCCCTCTCTTTCTCTCCCT--- 3' Nhlrc1 mmu-miR-1895 beg:751 end:777 pic:3' AGGAGGAGC-AGGAGGAGCC-CCC 5'& ||||.|. ||.||||| ||| &5' -CCTCTTTCTTCTTCCTCTATGGG 3' Nhlrc1 mmu-miR-18a beg:920 end:943 pic:3' GATAGAC-GTGATCTACGTGGAAT 5'& |||| |.| || ||||.||. &5' ---TCTGACGCCTGAAGCACTTTG 3' Nhlrc1 mmu-miR-18b beg:920 end:943 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& ||.|| || || || ||||.||. &5' CTGAC-GC-CT-GAAGCACTTTG 3' Nhlrc1 mmu-miR-1902 beg:925 end:942 pic:3' TTCAGTACGGATGACGTGGAGA 5'& ||||. ||||.|. &5' -------GCCTGAAGCACTTT- 3' Nhlrc1 mmu-miR-1930 beg:932 end:952 pic:3' TGCGACGTCCATGA-TACCTCCA 5'& ||| ||||||| &5' -----GCACTTTGTGATGGAGG- 3' Nhlrc1 mmu-miR-1930 beg:634 end:650 pic:3' TGCGACGTCCATGATACCTCCA 5'& ||| || .|||||| &5' ---CTG-AGAA---GTGGAGG- 3' Nhlrc1 mmu-miR-193star beg:247 end:266 pic:3' AGTAGAACGGG-CGTTTCTGGGT 5'& || | ||||||| &5' ------TGAGAAGAC-AGACCCA 3' Nhlrc1 mmu-miR-1940 beg:744 end:774 pic:3' TTGACGAGGT---GGAAGAGTCAGGAGGTA 5'& || |||| |.||||. |||||.|| &5' --CT-CTCCCCCTCTTTCTTCTTCCTCTAT 3' Nhlrc1 mmu-miR-1953 beg:568 end:588 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& ||| .|||| ||||||. &5' ---AAG-TTGAGCTCTTTCCT- 3' Nhlrc1 mmu-miR-1954 beg:662 end:675 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& || ||||||| &5' ----------CAATCTGCAG- 3' Nhlrc1 mmu-miR-1954 beg:811 end:821 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& ||||||| &5' -------------TCTGCAG- 3' Nhlrc1 mmu-miR-1958 beg:742 end:764 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& || || | || |||||.| &5' -CTCTCT-CCCCCTCTTTCTT- 3' Nhlrc1 mmu-miR-1960 beg:750 end:783 pic:3' TCGGGAGA----------AGATTGTCGTGACC 5'& |||||| |||| .||||||| &5' --CCCTCTTTCTTCTTCCTCTATGGGCACTGG 3' Nhlrc1 mmu-miR-1967 beg:709 end:734 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& |..| |||||.|. |||| &5' GTGTGTTCTCTCTCTCTCCCTC- 3' Nhlrc1 mmu-miR-196a beg:665 end:687 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& .| .||.| |.||||||| &5' -TCTGCAGCTT--AGCTACCTA 3' Nhlrc1 mmu-miR-196b beg:665 end:687 pic:3' GGGTTGTTGTCCTTTGATGGAT 5'& .| .||.| |.||||||| &5' -TCTGCAGCTT--AGCTACCTA 3' Nhlrc1 mmu-miR-196b beg:814 end:833 pic:3' GGGTTGTTGTC-CTTTGATGGAT 5'& .||| | |||.|||. &5' -------GCAGAGCCACTGCCTG 3' Nhlrc1 mmu-miR-199a-5p beg:770 end:784 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& ||..||||||| &5' ------------TGGGCACTGGG 3' Nhlrc1 mmu-miR-19astar beg:610 end:629 pic:3' CATCACGTTGATAC-GTTTTGAT 5'& |||||. .|| ||.|||| &5' -TAGTGT----GTGCCAGAACT- 3' Nhlrc1 mmu-miR-205 beg:931 end:952 pic:3' GTC-TGAGGCCACCTTACTTCCT 5'& || |||..| .|||.||| &5' -AGCACTTTGT---GATGGAGG- 3' Nhlrc1 mmu-miR-205 beg:632 end:651 pic:3' GTCTGAGGCCACCTTACTTCCT 5'& ||| | | |.||.||| &5' -----TCCTGAGAAGTGGAGG- 3' Nhlrc1 mmu-miR-208a beg:380 end:399 pic:3' TGTTCGAAAAACGAGCAGAATA 5'& . |||| .||||||| &5' GTGAGCTG------TGTCTTAT 3' Nhlrc1 mmu-miR-20a beg:919 end:943 pic:3' GATGGAC-GTGATATTCGTGAAAT 5'& .||| |.| |||||||||. &5' ---TCTGACGCCTGAAGCACTTTG 3' Nhlrc1 mmu-miR-20b beg:919 end:943 pic:3' GATGGAC-GTGATAC-TCGTGAAAC 5'& .||| |.| || ||||||||| &5' ---TCTGACGCC-TGAAGCACTTTG 3' Nhlrc1 mmu-miR-210 beg:425 end:443 pic:3' AGTCGGCGACAG-TGTGCGTGTC 5'& ||| | .||||| &5' -------CTGGTAAAGTGCACA- 3' Nhlrc1 mmu-miR-2132 beg:322 end:342 pic:3' GTAGCGCAGTT--GTGGGCGG 5'& || ||| |||..||. &5' ----GCTCCAAACCACTTGCT 3' Nhlrc1 mmu-miR-218 beg:864 end:885 pic:3' TGTACCAATCTAGT------TCGTGTT 5'& ||||||| |||||| &5' ------TTAGATCTTGCCCCAGCACA- 3' Nhlrc1 mmu-miR-22 beg:99 end:121 pic:3' TGTCAAGAAGTTGACCGTCGAA 5'& .||||| |||||.|| &5' GCAGTTACTAA---GGCAGTTT 3' Nhlrc1 mmu-miR-25 beg:946 end:967 pic:3' AGTCTGGCTCTGTT------CACGTTAC 5'& |||.| |||.||| &5' -------GAGGCTTTTCTCTGTGTAAT- 3' Nhlrc1 mmu-miR-27a beg:497 end:512 pic:3' CGCCTTGAATCGGTGACACTT 5'& ||| .||||||. &5' ------CTTCA--GCTGTGAG 3' Nhlrc1 mmu-miR-27bstar beg:566 end:583 pic:3' CAAGTGGTTAGTCGATTCGAGA 5'& ||| ||.|.|||||| &5' ------CAA--AGTTGAGCTCT 3' Nhlrc1 mmu-miR-294star beg:680 end:698 pic:3' TCTATCCCGGAGG--TAAAACTCA 5'& ||| |||||||| &5' --------CCTAGTAATTTTGAG- 3' Nhlrc1 mmu-miR-302b beg:920 end:941 pic:3' GATGATTTTGTACCTTCGTGAAT 5'& ||.| .| ||||||||| &5' ---CTGACGCCT-GAAGCACTT- 3' Nhlrc1 mmu-miR-3072star beg:732 end:754 pic:3' GGACGGGAGGGAGCCCCAGGGA 5'& |.| |.||||||| |||| &5' CTTTCTCTCCCTCTC--TCCC- 3' Nhlrc1 mmu-miR-3099 beg:734 end:757 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& |.|.| |||||||| ||| &5' TTCTCTCCCTCTCTCCC-CCT- 3' Nhlrc1 mmu-miR-32 beg:947 end:967 pic:3' ACGTTGAATCATTACACGTTAT 5'& | .||| ||||.||| &5' -GAGGCTTTTCTCTGTGTAAT- 3' Nhlrc1 mmu-miR-326 beg:248 end:269 pic:3' TGAC-CTCCTTCCCGGGTCTCC 5'& || || || | ||||||| &5' --TGAGAAGACAGACCCAGAG- 3' Nhlrc1 mmu-miR-330 beg:248 end:269 pic:3' CGGATTCTG-TGTCCGGGTCTCT 5'& |.||| |||| ||||||| &5' ---TGAGAAGACAGACCCAGAG- 3' Nhlrc1 mmu-miR-3473 beg:710 end:727 pic:3' CCGACTCGGTAGAGAGGT 5'& || |. ||||||. &5' ---TGTGTTCTCTCTCT- 3' Nhlrc1 mmu-miR-3473 beg:740 end:753 pic:3' CCGACTCGGTAGAGAGGT 5'& || ||||||| &5' -------CCCTCTCTCC- 3' Nhlrc1 mmu-miR-34a beg:590 end:607 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& .|| ||| .|||||| &5' ------GGCAAAG--GCTGCCA 3' Nhlrc1 mmu-miR-34a beg:809 end:831 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& ||.| || .|| ||||||| &5' --AATCTGCAGAGCCACTGCC- 3' Nhlrc1 mmu-miR-34b-5p beg:809 end:832 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& |||| || .| |||||||| &5' --AATCTGCAGAGC-CACTGCCT 3' Nhlrc1 mmu-miR-34c beg:809 end:832 pic:3' CGTTAGTCGA-TTGATGTGACGGA 5'& |||| || |.| |||||||| &5' --AATCTGCAGAGC--CACTGCCT 3' Nhlrc1 mmu-miR-363 beg:956 end:967 pic:3' ATGTCTACCTATGGCACGTTAA 5'& |.|||.|||| &5' ------------CTGTGTAATT 3' Nhlrc1 mmu-miR-376c beg:945 end:965 pic:3' TGCACTTT-AAAGGAGATACAA 5'& ||.. |||.||||.||| &5' ----GAGGCTTTTCTCTGTGT- 3' Nhlrc1 mmu-miR-384-5p beg:188 end:201 pic:3' TGTAACGGATCCTTAACAAATGT 5'& ||| |||||.| &5' -----GCC-------TGTTTGC- 3' Nhlrc1 mmu-miR-412 beg:694 end:717 pic:3' GCCGA-TC-ACCTGGTC-CACTT 5'& |||| || |||||.|| ||| &5' -GGCTAAGCTGGACTAGTGTG-- 3' Nhlrc1 mmu-miR-434-3p beg:643 end:663 pic:3' TCCTCAGCTCACTACCAAGTTT 5'& |||| || || |||||| &5' -GGAGGC-AG-GAA-GTTCAA- 3' Nhlrc1 mmu-miR-450a-3p beg:502 end:522 pic:3' TACTTACGT--TTCGTAGGGGTTA 5'& || .||| |||||| &5' ------GCTGTGAGCTCCCCCAA- 3' Nhlrc1 mmu-miR-450b-5p beg:800 end:823 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& |||. ||| |||||.|. &5' -ATTTGAGAAAAATCTGCAGAG 3' Nhlrc1 mmu-miR-466a-3p beg:386 end:408 pic:3' AGAATACACACGC-ACATACATAT 5'& ||||| |||||||||. &5' -----TGTGTCTTATGTATGTATG 3' Nhlrc1 mmu-miR-466b-3-3p beg:386 end:407 pic:3' AGAATACACACGC-ACATACATAA 5'& ||||| ||||||||| &5' -----TGTGTCTTATGTATGTAT- 3' Nhlrc1 mmu-miR-466b-3p beg:386 end:408 pic:3' AGAATACACACGC-ACATACATAT 5'& ||||| |||||||||. &5' -----TGTGTCTTATGTATGTATG 3' Nhlrc1 mmu-miR-466c-3p beg:386 end:408 pic:3' AGAATACACACGC-ACATACATAT 5'& ||||| |||||||||. &5' -----TGTGTCTTATGTATGTATG 3' Nhlrc1 mmu-miR-466d-3p beg:386 end:408 pic:3' GATACACACGC-ACATACATAT 5'& ||||| |||||||||. &5' ---TGTGTCTTATGTATGTATG 3' Nhlrc1 mmu-miR-466e-3p beg:386 end:408 pic:3' AGAATACACACGC-ACATACATAT 5'& ||||| |||||||||. &5' -----TGTGTCTTATGTATGTATG 3' Nhlrc1 mmu-miR-467a-1star beg:387 end:409 pic:3' CACATCCACAC---ACATACATATA 5'& |||| |||||||||.| &5' ------GTGTCTTATGTATGTATGT 3' Nhlrc1 mmu-miR-467bstar beg:387 end:409 pic:3' CACAACCACAC---ACATACATATA 5'& |||| |||||||||.| &5' ------GTGTCTTATGTATGTATGT 3' Nhlrc1 mmu-miR-467dstar beg:387 end:409 pic:3' CACATCCACAC---ACATACATATA 5'& |||| |||||||||.| &5' ------GTGTCTTATGTATGTATGT 3' Nhlrc1 mmu-miR-467estar beg:387 end:409 pic:3' TATATCCACAC---ACATACATATA 5'& |||| |||||||||.| &5' ------GTGTCTTATGTATGTATGT 3' Nhlrc1 mmu-miR-467g beg:386 end:408 pic:3' TATATACACAC---ACATACATAT 5'& ||||| |||||||||. &5' -----TGTGTCTTATGTATGTATG 3' Nhlrc1 mmu-miR-469 beg:440 end:459 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& |||| ||| |||||.||. &5' -------AAGA-CAA-GAAAGGGGT- 3' Nhlrc1 mmu-miR-483 beg:750 end:772 pic:3' GAGGGA-AGAGAAGAGGGCAGAA 5'& |||| |.||||||.|| ||| &5' --CCCTCTTTCTTCTTCC-TCT- 3' Nhlrc1 mmu-miR-499 beg:384 end:398 pic:3' TTTGTAGTGACGTTCAGAATT 5'& .|||. |||||| &5' -------GCTGT--GTCTTA- 3' Nhlrc1 mmu-miR-499 beg:102 end:124 pic:3' TTTGTAGTGA---CGTTCAGAATT 5'& .|.||| || |||.|||| &5' ----GTTACTAAGGC-AGTTTTAA 3' Nhlrc1 mmu-miR-666-5p beg:812 end:835 pic:3' CCGAGA-GTGTCGAC-ACGGGCGA 5'& ||| || ||| ||||.||| &5' ---TCTGCAGAGCCACTGCCTGCT 3' Nhlrc1 mmu-miR-668 beg:779 end:802 pic:3' CCATCACCCGGCTC--GGC-TCACTGT 5'& |||| ||| |||||.| &5' -----TGGGAACTATCCCGCAGTGATA 3' Nhlrc1 mmu-miR-669f beg:384 end:409 pic:3' TATGCACACAC---ACATACATATAC 5'& .| ||||| |||||||||.| &5' --GC-TGTGTCTTATGTATGTATGT- 3' Nhlrc1 mmu-miR-669h-3p beg:384 end:408 pic:3' ACACGTACACAC---ATATACGTAT 5'& || ||||| |.||||.||. &5' ---GC-TGTGTCTTATGTATGTATG 3' Nhlrc1 mmu-miR-669i beg:384 end:406 pic:3' CATACGTACACAC---ATATACGT 5'& || ||||| |.||||.| &5' ----GC-TGTGTCTTATGTATGTA 3' Nhlrc1 mmu-miR-669j beg:384 end:406 pic:3' ACAAACGTACACTC---ATATACGT 5'& || |||| |.||||.| &5' -----GC-TGTGTCTTATGTATGTA 3' Nhlrc1 mmu-miR-669k beg:384 end:408 pic:3' AACGTACGCAC---ATATACGTAT 5'& || ||.|| |.||||.||. &5' --GC-TGTGTCTTATGTATGTATG 3' Nhlrc1 mmu-miR-673-5p beg:490 end:512 pic:3' GAGGTTCCTGGTC-TCGACACTC 5'& |||| ||| ||||||||| &5' -TCCATC-ACCTTCAGCTGTGAG 3' Nhlrc1 mmu-miR-680 beg:337 end:364 pic:3' GGGGG--------TACAGTCGTCTACGGG 5'& |.|. ||||. |||||.| &5' -CTCTTAGATATGATGTT---AGATGTC- 3' Nhlrc1 mmu-miR-687 beg:591 end:612 pic:3' AGTAACGA---CGTAAGGTCCTATC 5'& || || |||||||. &5' -----GCAAAGGCTG-CCAGGATG- 3' Nhlrc1 mmu-miR-706 beg:270 end:288 pic:3' AAAAAACTCTGTC---CCAAAGAGA 5'& ||| |||||||.| &5' ----------CAGTATGGTTTCTTT 3' Nhlrc1 mmu-miR-709 beg:727 end:749 pic:3' AGGAG-GACGGAGACGGAGG 5'& |||| || .|||| ||||. &5' -CCTCTCTTTCTCTCCCTCT 3' Nhlrc1 mmu-miR-709 beg:751 end:772 pic:3' AGGAGGACGGAGACGGAGG 5'& ||||.| |.||| ||||. &5' -CCTCTTTCTTCTTCCTCT 3' Nhlrc1 mmu-miR-743b-5p beg:547 end:564 pic:3' ACTACCTGTGG-TC-AGACTTGT 5'& || || |.|||||| &5' ---------CCAAGATTTGAACA 3' Nhlrc1 mmu-miR-760 beg:254 end:270 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& ||||||||||||| &5' -----ACAGACCCAGAGC-- 3' Nhlrc1 mmu-miR-876-5p beg:299 end:319 pic:3' ATCACTAAGTGTCTCTTTAGGT 5'& ||. |||| .|||.|| &5' ---TGGG--ACAGTTGAATTCA 3' Nhlrc1 mmu-miR-877 beg:750 end:774 pic:3' GGGACGCGGTAG-AGGAGATG 5'& |||| . .| || |||||||. &5' CCCTCTTTCTTCTTCCTCTAT 3' Nhlrc1 mmu-miR-878-5p beg:850 end:871 pic:3' ACAGAACTGTA---GGTTGATCTAT 5'& ||| ..||.||||| &5' ------GACTCGTGTTAATTAGAT- 3' Nhlrc1 mmu-miR-881star beg:709 end:727 pic:3' TCTACACTGACAATAGAGAGAC 5'& ||| |||| ||||||| &5' ----GTG--TGTTCTCTCTCT- 3' Nhlrc1 mmu-miR-881star beg:941 end:962 pic:3' TCTACA-CTGACAATAGAGAGAC 5'& |||| |.|| |.|||||| &5' -GATGGAGGCT----TTTCTCTG 3' Nhlrc1 mmu-miR-883a-3p beg:87 end:109 pic:3' TATGACTC-TCGACAACGTCAAT 5'& ||||| .|| ||||||| &5' --ACTGAATGGCAAAAGCAGTTA 3' Nhlrc1 mmu-miR-92a beg:948 end:967 pic:3' GTCCGGCCCTGTTCACGTTAT 5'& ||||. |||.||| &5' -AGGCTTTTCTCTGTGTAAT- 3' Nhlrc1 mmu-miR-93 beg:920 end:943 pic:3' GATGGAC-GTGCTTGTCGTGAAAC 5'& .||| |.| ||||||||| &5' ---TCTGACGCCTGAAGCACTTTG 3' Nhlrc1 mmu-miR-96 beg:612 end:627 pic:3' TCGTTTTTACACGATCACGGTTT 5'& |||. ||||||.| &5' ---------GTGT--GTGCCAGA 3' Nhlrc1 mmu-miR-184 beg:222 end:241 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& .|| |||.| |||||||| &5' -TCC-TATTA----TCCGTCCA 3' Nhlrc1 mmu-miR-31 beg:862 end:877 pic:3' GTCGATACGGTCGTAGAACGGA 5'& ..|| |||||||| &5' --------TTAG-ATCTTGCC- 3' Nhlrc1 mmu-miR-133astar beg:538 end:549 pic:3' TAAACCAAGGTAAAATGGTCG 5'& |||||||. &5' -------------TTACCAGT 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nhlrc1 RAID00060799 mmu-miR-106b-5p miRNA MIMAT0000386 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00097924 mmu-miR-23a-3p miRNA MIMAT0000532 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00186735 mmu-miR-7008-3p miRNA MIMAT0027921 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00331654 mmu-miR-425-5p miRNA MIMAT0004750 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00346215 mmu-miR-27a-3p miRNA MIMAT0000537 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00363403 mmu-miR-653-5p miRNA MIMAT0004943 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00364799 mmu-miR-6965-5p miRNA MIMAT0027830 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00461780 mmu-miR-302a-3p miRNA MIMAT0000380 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00467019 mmu-miR-20b-5p miRNA MIMAT0003187 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00483838 mmu-miR-302d-3p miRNA MIMAT0003377 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00552841 mmu-miR-7235-5p miRNA MIMAT0028438 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00608160 mmu-miR-466p-3p miRNA MIMAT0014892 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00664369 mmu-miR-382-3p miRNA MIMAT0004691 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00874040 mmu-miR-466c-3p miRNA MIMAT0004878 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00959924 mmu-miR-466o-3p miRNA MIMAT0014886 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID00960398 mmu-miR-3473a miRNA MIMAT0015645 Nhlrc1 mRNA 105193 CLIP-seq 0.5483 Nhlrc1 RAID01022760 mmu-miR-106a-5p miRNA MIMAT0000385 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID01067043 mmu-miR-6971-5p miRNA MIMAT0027844 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID01124207 mmu-miR-489-3p miRNA MIMAT0003112 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID01170641 mmu-miR-211-5p miRNA MIMAT0000668 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID01261502 mmu-miR-140-5p miRNA MIMAT0000151 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID01465215 mmu-miR-3103-5p miRNA MIMAT0014937 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID01547056 mmu-miR-6997-5p miRNA MIMAT0027896 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID01571616 mmu-miR-330-5p miRNA MIMAT0004642 Nhlrc1 mRNA 105193 Prediction 0.2202 Nhlrc1 RAID01634798 mmu-miR-17-5p miRNA MIMAT0000649 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID01890777 mmu-miR-470-5p miRNA MIMAT0002111 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02081779 mmu-miR-185-5p miRNA MIMAT0000214 Nhlrc1 mRNA 105193 CLIP-seq//Prediction 0.6308 Nhlrc1 RAID02089640 mmu-miR-326-3p miRNA MIMAT0000559 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02160246 mmu-miR-295-3p miRNA MIMAT0000373 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02175782 mmu-miR-876-3p miRNA MIMAT0004855 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02227412 mmu-miR-504-3p miRNA MIMAT0017277 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02378688 mmu-miR-882 miRNA MIMAT0004847 Nhlrc1 mRNA 105193 CLIP-seq//Prediction 0.6308 Nhlrc1 RAID02381132 mmu-miR-31-5p miRNA MIMAT0000538 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02423772 mmu-miR-27b-3p miRNA MIMAT0000126 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02508736 mmu-miR-466b-3p miRNA MIMAT0004876 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02647437 mmu-miR-291a-3p miRNA MIMAT0000368 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02678871 mmu-miR-494-3p miRNA MIMAT0003182 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02743845 mmu-miR-93-5p miRNA MIMAT0000540 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02755879 mmu-miR-7088-5p miRNA MIMAT0028082 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02937471 mmu-miR-138-5p miRNA MIMAT0000150 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID02987219 mmu-miR-184-3p miRNA MIMAT0000213 Nhlrc1 mRNA 105193 Prediction 0.2202 Nhlrc1 RAID03056560 mmu-miR-20a-5p miRNA MIMAT0000529 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID03076079 mmu-miR-5127 miRNA MIMAT0020638 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID03087168 mmu-miR-302b-3p miRNA MIMAT0003374 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID03139134 mmu-miR-294-3p miRNA MIMAT0000372 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID03300133 mmu-miR-204-5p miRNA MIMAT0000237 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID03339301 mmu-miR-33-5p miRNA MIMAT0000667 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID03347429 mmu-miR-150-5p miRNA MIMAT0000160 Nhlrc1 mRNA 105193 Prediction 0.2202 Nhlrc1 RAID03389062 mmu-miR-6923-3p miRNA MIMAT0027747 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID03497282 mmu-miR-7047-5p miRNA MIMAT0027998 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID03581857 mmu-miR-466m-3p miRNA MIMAT0014883 Nhlrc1 mRNA 105193 Prediction 0.1828 Nhlrc1 RAID03872304 mmu-miR-23b-3p miRNA MIMAT0000125 Nhlrc1 mRNA 105193 Prediction 0.1828