DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Rnf149; Greul4 ATTTA 132-1316 1506-1510;1995-1999;2051-2055

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 67702 Rnf149 aucUCGUCGUUUAUUA-CUAAGc |||| :||| || ||||| aaaAGCAUUAAAAUAUGGAUUCa 2 20 811 833 [mm9:1:39608484-39608506:-] 0.5438 131 0 -11.55 -1.2539 MIMAT0004521 mmu-miR-15b* 67702 Rnf149 aucucGUCGUUUAUUACUA-AGc :| :|||| ||||| || uuaucUACUAAAUUAUGAUGUCu 2 18 192 214 [mm9:1:39609103-39609125:-] 0.5587 125 0 -5.26 -1.0686 MIMAT0004530 mmu-miR-127* 67702 Rnf149 uagucUCGGGAGACUC-GAAGUc ||:|: | ||| ||||| uguguAGUCUGCAGAGACUUCAg 2 18 601 623 [mm9:1:39608694-39608716:-] 0.5438 125 0 -19.84 -0.2629 MIMAT0000152 mmu-miR-140* 67702 Rnf149 ggcaccaaGAU--GGGACACCAu ||| |:||||||| guacuagaCUAGCCUCUGUGGUa 2 14 271 293 [mm9:1:39609024-39609046:-] 0.5311 148 7 -19.79 -0.7541 MIMAT0000154 mmu-miR-142-5p 67702 Rnf149 ucaucacgaaagaUGAAAUAc ||||||| uugaaaacaguggACUUUAUu 2 9 86 106 [mm9:1:39609211-39609231:-] 0.6043 140 7 -7.39 -0.6892 MIMAT0000154 mmu-miR-142-5p 67702 Rnf149 ucaucacgAAAGAUG-AAAUAc ||||||| ||||| gauuuacaUUUCUACUUUUAUu 2 14 678 699 [mm9:1:39608618-39608639:-] 0.5438 129 0 -10.68 -0.6908 MIMAT0000218 mmu-miR-24-1* 67702 Rnf149 ugacuauagucgAG-UCAUCCGUg || |||||||| ucauuaagaaaaUCAAGUAGGCAu 2 12 831 854 [mm9:1:39608463-39608486:-] 0.5438 146 7 -17.63 -1.0637 MIMAT0004547 mmu-miR-203* 67702 Rnf149 acaacUUGACAGUUCUUGGUGa :||| || |||||||| gcagaGACU-UC-AGAACCACa 2 18 611 630 [mm9:1:39608687-39608706:-] 0.5438 153 7 -15.92 -0.5211 MIMAT0000240 mmu-miR-207 67702 Rnf149 cucccuccucucggUCCUCUUCg |||||||| uuuucacacuuggaAGGAGAAGg 2 10 710 732 [mm9:1:39608585-39608607:-] 0.5438 145 7 -14.17 -0.4909 MIMAT0004583 mmu-miR-130b* 67702 Rnf149 ucauCACGUUGUCCCUUU-CUCa || ||| ||||| ||| gacuGUAGAACUUGGAAAUGAGa 2 19 394 416 [mm9:1:39608901-39608923:-] 0.4793 122 0 -14.68 -0.4109 MIMAT0004617 mmu-miR-148a* 67702 Rnf149 ucaGCCUCACAGAGUCUUGAAa ||||| | | ||||||| gagCGGAGACUGU-AGAACUUg 2 20 387 407 [mm9:1:39608910-39608930:-] 0.5045 157 7 -19.68 -0.1401 MIMAT0004617 mmu-miR-148a* 67702 Rnf149 ucaGCCUCA-CAGA-GUCU-UGAAa | | || |||| |||| |||| gagCUGUGUAGUCUGCAGAGACUUc 2 20 597 621 [mm9:1:39608696-39608720:-] 0.5133 125 0 -15.42 -0.1801 MIMAT0004620 mmu-let-7a* 67702 Rnf149 ccuUUCUGUCAUCUAACAUAUc |:|:||| || ||||||| ucuAGGGCAG-AGUUUGUAUAc 2 20 65 85 [mm9:1:39609232-39609252:-] 0.6043 165 7 -16.15 -0.6343 MIMAT0004621 mmu-let-7b* 67702 Rnf149 cccUUCCGUCAUCCAACAUAUc |:||||| || ||||||| ucuAGGGCAG-AGUUUGUAUAc 2 20 65 85 [mm9:1:39609232-39609252:-] 0.6043 169 7 -18.24 -0.6269 MIMAT0005439 mmu-let-7c-2* 67702 Rnf149 ccuUUCUGUCAUCUAACAUAUc |:|:||| || ||||||| ucuAGGGCAG-AGUUUGUAUAc 2 20 65 85 [mm9:1:39609232-39609252:-] 0.6043 165 7 -16.15 -0.6343 MIMAT0004623 mmu-let-7f* 67702 Rnf149 cccUUCCGUUAUCUAACAUAUc |:||||: || ||||||| ucuAGGGCAG-AGUUUGUAUAc 2 20 65 85 [mm9:1:39609232-39609252:-] 0.6043 165 7 -15.54 -0.6343 MIMAT0004623 mmu-let-7f* 67702 Rnf149 cccuuccgUUAUCUAA-CAUAUc ||| |||| ||||| ugucuuuaAAU-GAUUAGUAUAu 2 15 862 883 [mm9:1:39608434-39608455:-] 0.5438 120 0 -5.26 -1.0231 MIMAT0004625 mmu-miR-16* 67702 Rnf149 agucgUCGUGUCAGUUAUGACc ||| | ||||||||| uuuuaAGCCGAUUCAAUACUGu 2 18 974 995 [mm9:1:39608322-39608343:-] 0.5320 161 7 -14.96 -0.5166 MIMAT0004625 mmu-miR-16* 67702 Rnf149 agUCGUCGUGUCAG---UUAUGAcc | | :||| |: |||||| ugAUCUUUACAAUUAAAAAUACUua 3 21 895 919 [mm9:1:39608398-39608422:-] 0.5438 123 0 -6.01 -0.3254 MIMAT0004626 mmu-miR-18a* 67702 Rnf149 gucuuccucGUGA-AUCCCGUCa :||| |||||||| ucaguuuuuUACUCUAGGGCAGa 2 14 53 75 [mm9:1:39609242-39609264:-] 0.6043 152 7 -21.39 -1.1041 MIMAT0005440 mmu-miR-24-2* 67702 Rnf149 ugacaaagucgAG-UCAUCCGUg || |||||||| cauuaagaaaaUCAAGUAGGCAu 2 12 832 854 [mm9:1:39608463-39608485:-] 0.5438 146 7 -15.97 -1.0663 MIMAT0004633 mmu-miR-27a* 67702 Rnf149 acGAGUGUUCGUCGAUUCGGga || | :|| :|||||| ucCUAAAGAGAUUUUAAGCCga 3 21 963 984 [mm9:1:39608333-39608354:-] 0.5379 132 0 -12.44 -0.1587 MIMAT0000544 mmu-miR-129-3p 67702 Rnf149 uacgaaaaaccccaUUCCCGAa ||||||| agguuugauauacaAAGGGCUg 2 9 127 148 [mm9:1:39609169-39609190:-] 0.6043 140 7 -13.08 -0.5902 MIMAT0000549 mmu-miR-322* 67702 Rnf149 cacaACGUCGCGAAGUACAAa ||| : :| |||||| aaaaUGCCAUAUUGCAUGUUa 2 18 788 808 [mm9:1:39608509-39608529:-] 0.5438 121 6 -7.99 -0.2366 MIMAT0000551 mmu-miR-323-3p 67702 Rnf149 ucuccagcuggcaCAUUACAc ||||||| aaguaggcauacaGUAAUGUc 2 9 845 865 [mm9:1:39608452-39608472:-] 0.5438 140 7 -11.08 -0.5668 MIMAT0000558 mmu-miR-325* 67702 Rnf149 uguGAA-U-GACUCGUGGAUGAUcc ||| | || :|:|||||| agcCUUCAUCUAUUUAUCUACUAaa 3 21 179 203 [mm9:1:39609114-39609138:-] 0.5587 130 0 -11.98 -0.2662 MIMAT0000593 mmu-miR-344 67702 Rnf149 ugucaguccgaaaccGAUCUAgu |||||| auugugaaaagaacaCUAGAUga 3 9 649 671 [mm9:1:39608646-39608668:-] 0.5438 120 0 -7.88 -0.2409 MIMAT0000605 mmu-miR-350 67702 Rnf149 cuuucACAUAC--CCGAAACA-CUu |||||| |||||| || uguguUGUAUGUCUACUUUGUAGAc 2 18 1127 1151 [mm9:1:39608166-39608190:-] 0.5002 120 0 -11.48 -0.6963 MIMAT0000650 mmu-miR-17* 67702 Rnf149 gauguucacGGGAGUGAC-GUCa :|||||||| ||| ----caccaUCCUCACUGACAGc 2 14 1 19 [mm9:1:39609298-39609316:-] 0.6043 125 0 -20.35 -0.3835 MIMAT0004662 mmu-miR-139-3p 67702 Rnf149 gagguugucccggcGCAGAGGu ||||||| auugaucacaugaaCGUCUCCu 2 9 365 386 [mm9:1:39608931-39608952:-] 0.5297 140 7 -15.40 -0.2379 MIMAT0004665 mmu-miR-218-1* 67702 Rnf149 ccacgaacugccUUGGUACAAa | ||||||| agaagggaauuuAUCCAUGUUu 2 11 727 748 [mm9:1:39608569-39608590:-] 0.5438 142 7 -13.85 -1.0285 MIMAT0004665 mmu-miR-218-1* 67702 Rnf149 ccacgaacugccuugGUACAAa |||||| aaaaaugccauauugCAUGUUa 2 8 787 808 [mm9:1:39608509-39608530:-] 0.5438 120 6 -5.88 -0.2345 MIMAT0004670 mmu-miR-7a* 67702 Rnf149 auaccgUCUGACACUAA-ACAAc | | | ||||| |||| uaauuaAAAGUUUGAUUCUGUUg 2 17 918 940 [mm9:1:39608377-39608399:-] 0.5438 120 0 -9.11 -1.0060 MIMAT0003387 mmu-miR-376a* 67702 Rnf149 ugaguaucuuccucuUAGAUGg |||||| agccuucaucuauuuAUCUACu 2 8 179 200 [mm9:1:39609117-39609138:-] 0.5587 120 6 -8.83 -0.1707 MIMAT0004758 mmu-miR-463 67702 Rnf149 gaUGGAAU-AUACCACAGAUAGu ||: | |||| |||||||| cuACUAAAUUAUGAUGUCUAUCa 2 21 196 218 [mm9:1:39609099-39609121:-] 0.5587 163 7 -20.80 -1.2230 MIMAT0002105 mmu-miR-464 67702 Rnf149 auAGAGUGUCU--UAUUUGAAC-CAu | |::: || |||||||| || auUGUUGUUGAUUCUAAACUUGUGUu 2 22 1107 1132 [mm9:1:39608185-39608210:-] 0.4857 120 0 -8.83 -0.7526 MIMAT0002106 mmu-miR-465a-5p 67702 Rnf149 aguguagUCACGGUAAGAUUUAu | ||::: ||||||| uuugaagACUGUUG-UCUAAAUu 2 17 1043 1064 [mm9:1:39608253-39608274:-] 0.5246 146 7 -8.01 -0.2854 MIMAT0004759 mmu-miR-466a-5p 67702 Rnf149 auacAUGUACAUGUGUGUGUAu | || | || ||||||| agacUUCA-GAAC-CACACAUu 2 19 615 634 [mm9:1:39608683-39608702:-] 0.5438 146 7 -11.76 -0.1872 MIMAT0004790 mmu-miR-503* 67702 Rnf149 gguccgUCACCUUUGUUAUGAg || || ||||||| auuuuaAGCCGAUUCAAUACUg 2 17 973 994 [mm9:1:39608323-39608344:-] 0.5320 148 7 -9.40 -0.7897 MIMAT0004790 mmu-miR-503* 67702 Rnf149 gguccgucaccuuugUUAUGAg |||||| aucuuuacaauuaaaAAUACUu 2 8 897 918 [mm9:1:39608399-39608420:-] 0.5438 120 6 -6.57 -0.1685 MIMAT0003373 mmu-miR-302b* 67702 Rnf149 ucUUUC-GUA-AGGGUACAAUUUca || | ||| |: ||||||||| aaAAUGCCAUAUUGCAUGUUAAAaa 3 22 788 812 [mm9:1:39608505-39608529:-] 0.5438 147 0 -10.65 -0.1644 MIMAT0003375 mmu-miR-302c* 67702 Rnf149 cguccauUGGGGUACAAUUUcg |:: ||||||||| augccauAUUGCAUGUUAAAaa 3 16 791 812 [mm9:1:39608505-39608526:-] 0.5438 139 0 -9.95 -0.1692 MIMAT0003726 mmu-miR-675-3p 67702 Rnf149 ugacucgccaAUCCCGUAUGUc || |||||||| gaaaaucaagUA-GGCAUACAg 2 13 838 858 [mm9:1:39608459-39608479:-] 0.5438 146 7 -15.98 -0.7422 MIMAT0004822 mmu-miR-770-5p 67702 Rnf149 gcACCGGGUCUGUGCACCACGa || | ::|:|| ||||||| cuUGCCGUGGGCA-GUGGUGCa 2 21 420 440 [mm9:1:39608877-39608897:-] 0.4797 158 7 -21.79 -0.1704 MIMAT0014816 mmu-miR-3099 67702 Rnf149 agGGGUUGGAGA-GAGAUCGGAu :|::| : || ||||||| uuUCUGAGUACUAGACUAGCCUc 2 21 264 286 [mm9:1:39609031-39609053:-] 0.5311 143 7 -15.38 -0.2521 MIMAT0014816 mmu-miR-3099 67702 Rnf149 aggggUUGGAGAGAGAUCGGAu :||:|:| :|||||| uaaaaGACUUUUAAUUAGCCUu 2 18 163 184 [mm9:1:39609133-39609154:-] 0.5815 141 6 -16.75 -0.1319 MIMAT0003898 mmu-miR-760 67702 Rnf149 agGGGUGUCUGGGUCUCGGc |:||| || ||||||| gcCUCACCGA--CAGAGCCu 2 19 18 35 [mm9:1:39609282-39609299:-] 0.6043 155 7 -23.25 -0.1266 MIMAT0003741 mmu-miR-674* 67702 Rnf149 aacaaGACUCUACC---CUCGACAc :| || ||| ||||||| gagcaUUCAGCUGGCUUGAGCUGUg 2 18 580 604 [mm9:1:39608713-39608737:-] 0.5133 148 7 -18.95 -0.1346 MIMAT0003741 mmu-miR-674* 67702 Rnf149 aacAAGACUCUACCCUC-GACAc | ||||| |||| |||| gucUCCUGAG--CGGAGACUGUa 2 20 380 400 [mm9:1:39608917-39608937:-] 0.5045 120 0 -17.11 -0.2304 MIMAT0003451 mmu-miR-677 67702 Rnf149 agucuucgauUAGUAGUGACUu ||| ||||||| ------caccAUCCUCACUGAc 2 13 1 16 [mm9:1:39609301-39609316:-] 0.6043 152 7 -10.98 -0.6908 MIMAT0003469 mmu-miR-690 67702 Rnf149 aaaccAACACUCGGAUCGGAAa || | | :||||||| aagacUUUUAA--UUAGCCUUc 2 18 166 185 [mm9:1:39609132-39609151:-] 0.5815 142 7 -10.29 -1.1749 MIMAT0003471 mmu-miR-692 67702 Rnf149 cucacuccgcGAGUUUCUCUa | :||||||| auaacauuuuCCUAAAGAGAu 2 12 954 974 [mm9:1:39608343-39608363:-] 0.5379 143 7 -10.35 -0.9566 MIMAT0003493 mmu-miR-703 67702 Rnf149 aaGAAA--GGAAG---ACUUCCAAAa |||| |:||| | |||||| uaCUUUACCUUUCAGAUUCAGGUUUg 2 20 108 133 [mm9:1:39609184-39609209:-] 0.6043 121 6 -13.30 -0.1268 MIMAT0003500 mmu-miR-710 67702 Rnf149 gaguUGAGAGGGGUUCUGAAcc |:|| |: ||||||| uuuuAUUC-CUAAAAGACUUuu 3 19 154 174 [mm9:1:39609143-39609163:-] 0.5815 132 0 -12.34 -0.1447 MIMAT0004238 mmu-miR-743a 67702 Rnf149 agaUGAGUCGAACCACAGAAAg |: ||| | ||||||| ggcAUACAG--UAAUGUCUUUa 2 20 850 869 [mm9:1:39608448-39608467:-] 0.5438 144 7 -11.11 -1.1594 MIMAT0004840 mmu-miR-743b-3p 67702 Rnf149 agaUAAGUCGUACUACAGAAAg || |||:| |||||||| ggcAUACAGUA--AUGUCUUUa 2 20 850 869 [mm9:1:39608448-39608467:-] 0.5438 160 7 -14.41 -1.1574 MIMAT0004871 mmu-miR-465b-5p 67702 Rnf149 gucuAGUCGUGGUA--AGAUUUAu | | ||::| ||||||| ucuuUGAAGACUGUUGUCUAAAUu 2 19 1041 1064 [mm9:1:39608253-39608276:-] 0.5246 145 7 -7.75 -0.3101 MIMAT0004873 mmu-miR-465c-5p 67702 Rnf149 guCUAGUCGCGGUAAGAUUUAu || | :|::: ||||||| uuGAAGACUGUUG-UCUAAAUu 2 21 1044 1064 [mm9:1:39608253-39608273:-] 0.5246 146 7 -7.75 -0.2904 MIMAT0004875 mmu-miR-466b-5p 67702 Rnf149 guacAUGUACAUGUGUGUGUAg | || | || ||||||| agacUUCA-GAAC-CACACAUu 2 19 615 634 [mm9:1:39608683-39608702:-] 0.5438 146 7 -12.76 -0.1872 MIMAT0004877 mmu-miR-466c-5p 67702 Rnf149 auacAUGUACGUGUGUGUGUAg | || | || ||||||| agacUUCA-GAAC-CACACAUu 2 19 615 634 [mm9:1:39608683-39608702:-] 0.5438 146 7 -13.24 -0.1872 MIMAT0004879 mmu-miR-466e-5p 67702 Rnf149 auacAUGUACAUGUGUGUGUAg | || | || ||||||| agacUUCA-GAAC-CACACAUu 2 19 615 634 [mm9:1:39608683-39608702:-] 0.5438 146 7 -12.20 -0.1872 MIMAT0004932 mmu-miR-878-5p 67702 Rnf149 acAGAACUGUAGGU-UGAUCUAu |: ||| | | ||||||| aaUUGUGAAAAGAACACUAGAUg 2 21 648 670 [mm9:1:39608647-39608669:-] 0.5438 147 7 -11.12 -0.8262 MIMAT0004938 mmu-miR-875-3p 67702 Rnf149 guaucggagucauaAAAGUCc |||||| uauuuuacuuuaccUUUCAGa 2 8 103 123 [mm9:1:39609194-39609214:-] 0.6043 120 6 -7.69 -0.1189 MIMAT0005830 mmu-miR-466l 67702 Rnf149 uuauacacACGUACAUAAAUAu | ||| ||||||| aauuagccUUCAUCUAUUUAUc 2 15 175 196 [mm9:1:39609121-39609142:-] 0.5587 154 7 -5.40 -0.6813 MIMAT0005837 mmu-miR-1187 67702 Rnf149 aaUGUGUGUA-UGUGUGUGUGUAu | | || | | | ||||||| gcAGAGACUUCAGAACCACACAUu 2 22 611 634 [mm9:1:39608683-39608706:-] 0.5438 148 7 -13.98 -0.1994 MIMAT0005849 mmu-miR-1191 67702 Rnf149 aucccgauguaucaUUCUGAc |||||| uauuuuauuccuaaAAGACUu 2 8 152 172 [mm9:1:39609145-39609165:-] 0.5815 120 6 -5.51 -0.1053 MIMAT0005851 mmu-miR-1193 67702 Rnf149 cuaucaUUUUGCCCACUGGAu || || ||||||| cgauucAAUAC-UGUGACCUu 2 16 982 1001 [mm9:1:39608316-39608335:-] 0.5320 145 7 -11.90 -0.9830 MIMAT0007865 mmu-miR-1897-3p 67702 Rnf149 gagUGGCCUGUCUUGCUCAACu || | :| | ||||||| uagACAGAGCUCACCGAGUUGa 2 20 323 344 [mm9:1:39608973-39608994:-] 0.5297 151 7 -22.12 -0.3233 MIMAT0009415 mmu-miR-1948 67702 Rnf149 gacAUGCUCACGA-GACGGAUUu | | | | :| :||||||| cauUUCUACUUUUAUUGCCUAAu 2 20 684 706 [mm9:1:39608611-39608633:-] 0.5438 146 7 -10.14 -1.1627 MIMAT0009416 mmu-miR-1949 67702 Rnf149 uuGAUACGACUGUAGG-ACCAUAUc ||| || :| ||: ||||||| uaCUAGACUAGCCUCUGUGGUAUAa 2 23 272 296 [mm9:1:39609021-39609045:-] 0.5183 161 7 -15.05 -0.4462 MIMAT0009423 mmu-miR-1952 67702 Rnf149 gucuuccucCCACCUcu |||||| guauauuuuGGUGGAuu 3 9 878 894 [mm9:1:39608423-39608439:-] 0.5438 120 0 -8.46 -0.1021 MIMAT0009425 mmu-miR-1954 67702 Rnf149 uuguccCAGAGUGAGACGUCa || | | ||||||| ugagcuGUGU-AGUCUGCAGa 2 16 596 615 [mm9:1:39608702-39608721:-] 0.5133 145 7 -14.37 -0.2599 MIMAT0009431 mmu-miR-1958 67702 Rnf149 ugaaugacgaagGUGAAAGGAu ||:|||||| agacuaaaauaaCAUUUUCCUa 2 11 946 967 [mm9:1:39608350-39608371:-] 0.5438 134 6 -14.65 -0.1536 MIMAT0009431 mmu-miR-1958 67702 Rnf149 ugaaUGACG-AAGGUGAAA-GGAu ||| : ||::||||| ||| guggACUUUAUUUUACUUUACCUu 2 19 95 118 [mm9:1:39609199-39609222:-] 0.6043 125 0 -13.99 -0.8847 MIMAT0009435 mmu-miR-1962 67702 Rnf149 uacacaGGGUCACGGUCGGAGa |:|| || ||||||| accaucCUCACUGACAGCCUCa 2 17 2 23 [mm9:1:39609294-39609315:-] 0.6043 160 7 -19.87 -0.5384 MIMAT0009460 mmu-miR-1982.1 67702 Rnf149 gaCACCCUCU-UGUAUCCC-ACUCu || || | ||| |||| |||| agGUUUGAUAUACAAAGGGCUGAGa 2 22 127 151 [mm9:1:39609166-39609190:-] 0.6043 128 0 -19.25 -1.2513 MIMAT0000122 mmu-let-7i 67702 Rnf149 uugUCGUGUUUGAUGAU-GGAGu ||:|| |: |||| |||| cugAGUACUAG--ACUAGCCUCu 2 20 267 287 [mm9:1:39609030-39609050:-] 0.5311 120 0 -17.14 -0.2715 MIMAT0000123 mmu-miR-1 67702 Rnf149 uauguaugaagaaaUGUAAGGu ||||||| gacuucagaaccacACAUUCCu 2 9 616 637 [mm9:1:39608680-39608701:-] 0.5438 140 7 -11.75 -0.2922 MIMAT0000126 mmu-miR-27b 67702 Rnf149 cgucUUGAAUCGGUGACACUu :|:| | :||||||| agccGAUUCA-AUACUGUGAc 2 18 979 998 [mm9:1:39608319-39608338:-] 0.5320 143 7 -12.44 -0.8279 MIMAT0000134 mmu-miR-124 67702 Rnf149 ccgUAAGUGGCG-CAC-GGAAu ||||| : | ||| |||| ccgAUUCAAUACUGUGACCUUu 2 18 981 1002 [mm9:1:39608315-39608336:-] 0.5320 120 0 -13.38 -0.7628 MIMAT0004528 mmu-miR-125a-3p 67702 Rnf149 ccgaggguucuuggAGUGGACa ||||||| uaaguuuuguuguaUCACCUGu 2 9 219 240 [mm9:1:39609077-39609098:-] 0.5449 140 7 -17.38 -0.8397 MIMAT0000144 mmu-miR-132 67702 Rnf149 gcugguaccGACAUCUGACAAu :|| |||||||| ugaaagucuUUGAAGACUGUUg 2 14 1035 1056 [mm9:1:39608261-39608282:-] 0.5246 153 7 -17.77 -0.4719 MIMAT0000156 mmu-miR-144 67702 Rnf149 ucauguaguAGAUAUGACAu || ||||||| uaagccgauUCAAUACUGUg 2 12 977 996 [mm9:1:39608321-39608340:-] 0.5320 147 7 -11.04 -0.6944 MIMAT0000165 mmu-miR-155 67702 Rnf149 uggGGAUAGUGUUAAUCGUAAUu | |:|:| || ||||||| uugCAUGUUAAAAAAAGCAUUAa 2 21 799 821 [mm9:1:39608496-39608518:-] 0.5438 160 7 -10.99 -1.1807 MIMAT0000209 mmu-miR-129-5p 67702 Rnf149 cguucgggUCUGG--CGUUUUUc | ||| ||||||| aaaaaaaaAAACCUGGCAAAAAa 2 14 769 791 [mm9:1:39608526-39608548:-] 0.5438 144 7 -9.11 -0.8721 MIMAT0000210 mmu-miR-181a 67702 Rnf149 ugAGUGGCUGUCGCAACUU-ACAa ||||||| |||||| ||| gcUCACCGA----GUUGAAGUGUg 2 22 331 350 [mm9:1:39608967-39608986:-] 0.5297 128 0 -22.68 -0.6890 MIMAT0000236 mmu-miR-203 67702 Rnf149 gaucaccaggauuUGUAAAGug ||||||| gauuuuaugauuuACAUUUCua 3 10 670 691 [mm9:1:39608626-39608647:-] 0.5438 125 0 -6.81 -0.1768 MIMAT0000239 mmu-miR-206 67702 Rnf149 gguguGUGAAGGAAUGUAAGGu || || ||||||| gacuuCAGAACCACACAUUCCu 2 18 616 637 [mm9:1:39608680-39608701:-] 0.5438 145 7 -18.10 -0.2922 MIMAT0000383 mmu-let-7d 67702 Rnf149 uuGAUACGUUGGAUGAU-GGAGa ||: |:| : |||| |||| uuCUGAGUACUAGACUAGCCUCu 2 21 265 287 [mm9:1:39609030-39609052:-] 0.5311 120 0 -16.08 -0.2739 MIMAT0000525 mmu-let-7f 67702 Rnf149 uuGAUAUGUUAGAUGAU-GGAGu ||: ::| | |||| |||| uuCUGAGUACUAGACUAGCCUCu 2 21 265 287 [mm9:1:39609030-39609052:-] 0.5311 120 0 -12.05 -0.2691 MIMAT0000533 mmu-miR-26a 67702 Rnf149 ucggaUAGGACCUAAUGAACUu | ::|| | ||||||| ggcagAGUUUGUA-UACUUGAa 2 18 70 90 [mm9:1:39609227-39609247:-] 0.6043 147 7 -14.39 -1.1220 MIMAT0000534 mmu-miR-26b 67702 Rnf149 uggaUAGGACUUAAUGAACUu | ::|| | ||||||| gcagAGUUUGUA-UACUUGAa 2 18 71 90 [mm9:1:39609227-39609246:-] 0.6043 147 7 -12.85 -1.1220 MIMAT0000537 mmu-miR-27a 67702 Rnf149 cgccUUGAAUCGGUGACACUu :|:| | :||||||| agccGAUUCA-AUACUGUGAc 2 18 979 998 [mm9:1:39608319-39608338:-] 0.5320 143 7 -12.44 -0.8279 MIMAT0000538 mmu-miR-31 67702 Rnf149 gucgaUACGGUCGUAGAACGGa ||| | |||||||| uggaaAUGAGA-AAUCUUGCCg 2 18 406 426 [mm9:1:39608891-39608911:-] 0.4797 147 7 -15.14 -0.1888 MIMAT0000656 mmu-miR-139-5p 67702 Rnf149 gaccuCUGUGCACGUGACAUCu || :|| ||||||| cuccuGA-GCGGAGACUGUAGa 2 18 382 402 [mm9:1:39608915-39608935:-] 0.5045 143 7 -17.50 -0.3446 MIMAT0000659 mmu-miR-212 67702 Rnf149 accggCACUGACCUCUGACAAu || :|| |||||||| ugaaaGUCUUUGAAGACUGUUg 2 18 1035 1056 [mm9:1:39608261-39608282:-] 0.5246 157 7 -16.96 -0.4719 MIMAT0000674 mmu-miR-181c 67702 Rnf149 ugAGUGGCUGUCCAACUU-ACAa ||||||| |||||| ||| gcUCACCGA---GUUGAAGUGUg 2 21 331 350 [mm9:1:39608967-39608986:-] 0.5297 132 0 -23.07 -0.6815 MIMAT0004747 mmu-miR-411 67702 Rnf149 gcAUGCGAUAUGCCAGAUGAu |::|:|:||: ||||||| cuUGUGUUGUAU-GUCUACUu 2 20 1125 1144 [mm9:1:39608173-39608192:-] 0.5002 161 7 -19.48 -0.9227 MIMAT0004747 mmu-miR-411 67702 Rnf149 gcAUGCGAUAUG-CCAGAUGAu ||:| | ||| |||||| uuUAUGAUUUACAUUUCUACUu 2 20 673 694 [mm9:1:39608623-39608644:-] 0.5438 126 6 -11.18 -0.1181 MIMAT0004747 mmu-miR-411 67702 Rnf149 gcaugcgauaugccAGAUGAu |||||| ccuucaucuauuuaUCUACUa 2 8 181 201 [mm9:1:39609116-39609136:-] 0.5587 120 6 -11.33 -0.3055 MIMAT0001418 mmu-miR-431 67702 Rnf149 acGUACUGCCGGACGU-UCUGu ::|| : |:||||| |||| gcUGUG-UAGUCUGCAGAGACu 2 20 599 619 [mm9:1:39608698-39608718:-] 0.5219 121 0 -18.14 -0.2353 MIMAT0003128 mmu-miR-485 67702 Rnf149 cuuaAGUAGUGCCGGUCGGAGa || |||| | ||||||| accaUCCUCACUGACAGCCUCa 2 19 2 23 [mm9:1:39609294-39609315:-] 0.6043 166 7 -19.12 -0.5313 MIMAT0003172 mmu-miR-542-3p 67702 Rnf149 aaAGUCAAUA-GUUAGACAGUGu |: |||:| : | ||||||| guUUUGUUGUAUCACCUGUCACa 2 21 222 244 [mm9:1:39609073-39609095:-] 0.5449 155 7 -17.56 -0.6401 MIMAT0003182 mmu-miR-494 67702 Rnf149 cuccAAAGGGCACA-UACAA-AGu |||:|:|| | ||||| || cuucUUUUCUGUUUAAUGUUCUCg 2 19 1007 1030 [mm9:1:39608287-39608310:-] 0.5320 129 0 -12.30 -0.6582 MIMAT0003183 mmu-miR-376c 67702 Rnf149 ugcacUUUAAAGGAG-AUACAa | ||| |:|| ||||| accacACAUUCCUUCUUAUGUg 2 17 625 646 [mm9:1:39608671-39608692:-] 0.5438 124 0 -9.40 -0.4499 MIMAT0003729 mmu-miR-216b 67702 Rnf149 agUGUAAACGGACGUCUCUAAa |||||| ||| ||||||| uaACAUUUUCCUAAAGAGAUUu 2 21 955 976 [mm9:1:39608341-39608362:-] 0.5379 176 7 -20.66 -1.0476 MIMAT0003738 mmu-miR-496 67702 Rnf149 cucuaaccgguacaUUAUGAGu ||||||: ucuuuacaauuaaaAAUACUUa 2 9 898 919 [mm9:1:39608398-39608419:-] 0.5438 124 0 -6.67 -0.3336 MIMAT0003450 mmu-miR-488 67702 Rnf149 cugguucuuugucGGAAAGUu ||||||| uuauuuuacuuuaCCUUUCAg 2 9 102 122 [mm9:1:39609195-39609215:-] 0.6043 140 7 -11.30 -1.0150 MIMAT0003482 mmu-miR-499 67702 Rnf149 uuUGUAGUGACGU-UCA-GAAUu | ||: |||:| ||| |||| cuAAAUU-CUGUAUAGUGCUUAg 2 20 1058 1079 [mm9:1:39608238-39608259:-] 0.5246 120 0 -11.42 -0.9096 MIMAT0004324 mmu-miR-181d 67702 Rnf149 ugGGUGGCU---GUUGUUACUU-ACAa :|||||| || :|||| ||| gcUCACCGAGUUGAAGUGUGAAGUGUa 2 22 331 357 [mm9:1:39608960-39608986:-] 0.5297 120 0 -20.13 -0.7958

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G038840 Rnf149 Mus musculus 67702

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf149 mmu-miR-129-3p beg:138 end:148 pic:3' TACGAAAAACCCCATTCCCGAA 5'& ||||||| &5' --------------AAGGGCT- 3' Rnf149 mmu-miR-16star beg:976 end:995 pic:3' AGTCGTCGTGTC-AGTTATGACC 5'& ||| |. ||||||||| &5' -----AGC-CGATTCAATACTG- 3' Rnf149 mmu-miR-206 beg:623 end:646 pic:3' GGTGTGTGA--AGGAATGTAAGGT 5'& |||||||.| |.||||..| &5' CCACACATTCCTTCTTATGT---- 3' Rnf149 mmu-miR-148astar beg:388 end:407 pic:3' TCAGCCTCACAGAGTCTTGAAA 5'& ||||| .||||||| &5' ---CGGAGACTG-TAGAACTT- 3' Rnf149 mmu-miR-216b beg:957 end:977 pic:3' AGTGTAAACGGACGTCTCTAAA 5'& ||||| ||| |||||||| &5' ---CATTTTCCTAAAGAGATTT 3' Rnf149 mmu-miR-18astar beg:59 end:75 pic:3' GTCTTCCTCGTGA-ATCCCGTCA 5'& .||| |||||||| &5' ---------TACTCTAGGGCAG- 3' Rnf149 mmu-miR-144 beg:977 end:997 pic:3' TCATGTAGTAGATATGACAT 5'& .| || |||||||. &5' ---GCCGATTCAATACTGTG 3' Rnf149 mmu-miR-1187 beg:618 end:633 pic:3' AATGTGTGTATGTGTGTGTGTAT 5'& || || ||||||| &5' -------CAGA-AC-CACACAT- 3' Rnf149 mmu-miR-218-1star beg:729 end:749 pic:3' CCACGAACTGCCTT-----GGTACAAA 5'& |||| |||||||| &5' ----------GGAATTTATCCATGTTT 3' Rnf149 mmu-miR-542-3p beg:228 end:245 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& ||||| |||||||| &5' -------TATCAC-CTGTCACA 3' Rnf149 mmu-miR-140star beg:276 end:294 pic:3' GGCACCAAGA-TGG-GACACCAT 5'& || .|| |||||||| &5' --------CTAGCCTCTGTGGTA 3' Rnf149 mmu-miR-212 beg:1037 end:1057 pic:3' ACCGGCACTGACCTCTGACAAT 5'& || .|| ||||||||. &5' -----GTCTTTGAAGACTGTTG 3' Rnf149 mmu-miR-132 beg:1041 end:1057 pic:3' GCTGGTACCGACATCTGACAAT 5'& .|| ||||||||. &5' ---------TTGAAGACTGTTG 3' Rnf149 mmu-miR-675-3p beg:847 end:859 pic:3' TGACTCGCCAATCCCGTATGTC 5'& ||||||||| &5' -------------GGCATACAG 3' Rnf149 mmu-miR-324-3p beg:420 end:437 pic:3' TCGTCGTGGACCCCGTCACC 5'& .|| ||||||||| &5' ------GCCGTGGGCAGTGG 3' Rnf149 mmu-miR-411 beg:1127 end:1143 pic:3' GCATGCGATATGCCAGATGAT 5'& |.|.||. ||||||| &5' -----GTTGTAT-GTCTACT- 3' Rnf149 mmu-miR-463 beg:202 end:219 pic:3' GATGGAATATACCACAGATAGT 5'& |||| ||||||||| &5' --------TATGATGTCTATCA 3' Rnf149 mmu-miR-1193 beg:991 end:1001 pic:3' CTATCATTTTGCCCACTGGAT 5'& ||||||| &5' -------------GTGACCT- 3' Rnf149 mcmv-miR-m01-3 beg:175 end:189 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& .|| | |||||.| &5' ---------TAG-C-CTTCATC- 3' Rnf149 mghv-miR-M1-6 beg:39 end:61 pic:3' TTTTGGTGGAGTGTGTCAAAGT 5'& .||| ||. ||||||. &5' -GAACAGGA-CATTCAGTTTT- 3' Rnf149 mghv-miR-M1-9 beg:333 end:352 pic:3' TTTTTCCAGGTCCG--TTTACACT 5'& ||. |. ||.||||| &5' --------CCGAGTTGAAGTGTGA 3' Rnf149 mmu-let-7astar beg:65 end:85 pic:3' CCTTTCTGTCATCTAACATATC 5'& |.|.||| || ||||||| &5' ---AGGGCAG-AGTTTGTATA- 3' Rnf149 mmu-let-7bstar beg:65 end:85 pic:3' CCCTTCCGTCATCCAACATATC 5'& |.||||| || ||||||| &5' ---AGGGCAG-AGTTTGTATA- 3' Rnf149 mmu-let-7c-2star beg:65 end:85 pic:3' CCTTTCTGTCATCTAACATATC 5'& |.|.||| || ||||||| &5' ---AGGGCAG-AGTTTGTATA- 3' Rnf149 mmu-let-7fstar beg:65 end:85 pic:3' CCCTTCCGTTATCTAACATATC 5'& |.||||. || ||||||| &5' ---AGGGCAG-AGTTTGTATA- 3' Rnf149 mmu-let-7gstar beg:1061 end:1074 pic:3' CGTTCCGTCACCGGACATGTCA 5'& .|||||.||| &5' ------------TCTGTATAGT 3' Rnf149 mmu-miR-1 beg:672 end:690 pic:3' TATGTATGAAGAAATGTAAGGT 5'& ||. ||||||||.| &5' -----TATGA-TTTACATTTC- 3' Rnf149 mmu-miR-1190 beg:571 end:593 pic:3' CTGTCTCCC-CTTG-GAGTCGACT 5'& ||| | ||.| .|||||||. &5' ----GAGAGCGAGCATTCAGCTGG 3' Rnf149 mmu-miR-122 beg:618 end:637 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& ||.| |||| ||||.||| &5' CAGA-ACCA----CACATTCC- 3' Rnf149 mmu-miR-128 beg:977 end:998 pic:3' TTTCTCTGGCCAAG---TGACACT 5'& .||| ||| ||||||| &5' ------GCCGATTCAATACTGTGA 3' Rnf149 mmu-miR-129-3p beg:243 end:263 pic:3' TACGAAAAACCCCATTCCCGAA 5'& |||. || || |.|||.| &5' ATGTA---TGTGG-AGGGGTT- 3' Rnf149 mmu-miR-130bstar beg:506 end:529 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& || || .|| || ||.|||| &5' AGGGGT-TAAGAGAGAGAGAG- 3' Rnf149 mmu-miR-130bstar beg:534 end:555 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& || |||| || ||.|||| &5' ---AGAGCAAGAGAGAGAGAG- 3' Rnf149 mmu-miR-139-5p beg:433 end:449 pic:3' GACCTCTGTGCACG--TGACATCT 5'& |||| |||||.| &5' ----------GTGCAAACTGTGG- 3' Rnf149 mmu-miR-146a beg:42 end:62 pic:3' TTGGGTACCT-TAAGTCAAGAGT 5'& || ||| ||||||||.|. &5' ----CA-GGACATTCAGTTTTT- 3' Rnf149 mmu-miR-146b beg:44 end:62 pic:3' TCGGATACCT-TAAGTCAAGAGT 5'& ||| ||||||||.|. &5' -------GGACATTCAGTTTTT- 3' Rnf149 mmu-miR-146bstar beg:50 end:73 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& .||| |.||||||| &5' -TCAGTTTTTTA-CTCTAGGGC 3' Rnf149 mmu-miR-151-3p beg:594 end:612 pic:3' GGAGTTCCTCGGA--GTCAGATC 5'& ||||. .|||||. &5' -------GAGCTGTGTAGTCTG- 3' Rnf149 mmu-miR-151-3p beg:452 end:472 pic:3' GGAGTTCCTCGGAGTCAGATC 5'& || |.||||||.| |||. &5' CC-CGAGGAGCTTGAGTT--- 3' Rnf149 mmu-miR-154 beg:984 end:1001 pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& |||.|| .|.|||| &5' ------CAATACT-GTGACCT- 3' Rnf149 mmu-miR-155 beg:798 end:822 pic:3' TGGGGATAGTGTTAATCGTAATT 5'& .| |.|.| |||||||| &5' GCA--TGTTAAAAAAAGCATTAA 3' Rnf149 mmu-miR-183 beg:778 end:799 pic:3' TCACTTAAGATGGTC----ACGGTAT 5'& ||. || ||||||| &5' --------CTGGCAAAAAATGCCATA 3' Rnf149 mmu-miR-1839-5p beg:177 end:198 pic:3' GTTCTGGACA-AGATAGATGGAA 5'& .||| |||||.||.|| &5' ----GCCTTCATCTATTTATCT- 3' Rnf149 mmu-miR-1839-5p beg:1121 end:1146 pic:3' GTTCTGGACAAG----ATAGATGGAA 5'& ||.||| |.|||||.|| &5' ----ACTTGTGTTGTATGTCTACTTT 3' Rnf149 mmu-miR-1904 beg:61 end:76 pic:3' GGAGGGAGGTCTCCTCGTCTTG 5'& |||.|| .|||||. &5' -----CTCTAG---GGCAGAG- 3' Rnf149 mmu-miR-1928 beg:482 end:496 pic:3' CTCGACCGTTACATCGA 5'& ||| .|||||| &5' -----GGCTGTGTAGC- 3' Rnf149 mmu-miR-1930 beg:240 end:259 pic:3' TGCGACGTC--CATGATACCTCCA 5'& ||| ||| |.|||||| &5' ------CAGATGTA-TGTGGAGG- 3' Rnf149 mmu-miR-1941-3p beg:247 end:271 pic:3' TAC-CCTCTATGACGATT-CTAC 5'& ||| ||||. .||.| || &5' ATGTGGAGGGGTTGTTTCTGA-- 3' Rnf149 mmu-miR-195 beg:930 end:947 pic:3' CGGTTATAAAGAC-ACGACGAT 5'& ||||| ||.||.|| &5' --------TTCTGTTGTTGTTA 3' Rnf149 mmu-miR-1954 beg:595 end:615 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& |.| || .| ||||||| &5' AGCT--GTG-TAGTCTGCAG- 3' Rnf149 mmu-miR-1957 beg:1014 end:1034 pic:3' CAGTATACGAGATGGTGAC 5'& ||. |||.||| |.||| &5' GTTTAATGTTCT--CGCTG 3' Rnf149 mmu-miR-1962 beg:3 end:23 pic:3' TACACAGG-GTCACGGTCGGAGA 5'& ||| || || ||||||| &5' -----TCCTCACTGACAGCCTC- 3' Rnf149 mmu-miR-1962 beg:268 end:288 pic:3' TACACAGGGTCACGGTCGGAGA 5'& || |.|| |.||||||| &5' ----GTACTAGA-CTAGCCTCT 3' Rnf149 mmu-miR-196astar beg:1096 end:1118 pic:3' AGTCCGTCAAAGAACAACGGCT 5'& ||| ||| ||||||..|| &5' --AGG-AGTCCATTGTTGTTGA 3' Rnf149 mmu-miR-196astar beg:930 end:944 pic:3' AGTCCGTCAAAGAACAACGGCT 5'& ||| |||||..| &5' ---------TTC-TGTTGTTG- 3' Rnf149 mmu-miR-1981 beg:1026 end:1047 pic:3' CGGTGCAGATTCGGG-TCGGAAATG 5'& | || || .|. ||.||||. &5' --CTCG-CT-GGTGAAAGTCTTTG- 3' Rnf149 mmu-miR-203star beg:611 end:630 pic:3' ACAACT-TGACAGTTCTTGGTGA 5'& || ||| || |||||||| &5' ----GAGACT-TC-AGAACCAC- 3' Rnf149 mmu-miR-204 beg:537 end:559 pic:3' TCCGTATC-CTACTGTTTCCCTT 5'& ||| || || || |.|||||. &5' --GCA-AGAGA-GAGAGAGGGAG 3' Rnf149 mmu-miR-204 beg:718 end:736 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& ||| | .||||||| &5' -------GGAAGGAGAAGGGAA 3' Rnf149 mmu-miR-20astar beg:341 end:360 pic:3' GAAATTCACGAGCATTACGTCA 5'& |||||. |.||.||| &5' ----AAGTGTGA--AGTGTAGT 3' Rnf149 mmu-miR-20bstar beg:386 end:402 pic:3' GATCTTCACGAGTGTGACGTCA 5'& || | ||||.|| &5' --------GCGGAGACTGTAG- 3' Rnf149 mmu-miR-211 beg:537 end:559 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& ||||. || || |.|||||. &5' --GCAAGAGA-GAGAGAGGGAG 3' Rnf149 mmu-miR-211 beg:719 end:736 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& .||||| .||||||| &5' ----GAAGGA----GAAGGGAA 3' Rnf149 mmu-miR-2135 beg:605 end:622 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& || || .||||.|| &5' ---TCTGCA--GAGACTTC- 3' Rnf149 mmu-miR-21star beg:923 end:944 pic:3' CTGTCGGGTAGCTGACGACAAC 5'& ||. . |||.||||| &5' ---AGTTTGATT-CTGTTGTTG 3' Rnf149 mmu-miR-221 beg:480 end:496 pic:3' CTTTGGGTCGTCTGTTACATCGA 5'& |.|.| .|||||| &5' ---------CGGGCTGTGTAGC- 3' Rnf149 mmu-miR-222 beg:483 end:505 pic:3' TGGGTCATCGGTCTACATCGA 5'& .|. ||||||||| ||| &5' GCTGTGTAGCCAGACT--GCT 3' Rnf149 mmu-miR-23a beg:330 end:352 pic:3' CCTTTAG-GGACCG---TTACACTA 5'& || || |. |.||||| &5' -----TCACCGAGTTGAAGTGTGA- 3' Rnf149 mmu-miR-23b beg:333 end:352 pic:3' CCATTAGGGACCG---TTACACTA 5'& || |. |.||||| &5' -------CCGAGTTGAAGTGTGA- 3' Rnf149 mmu-miR-26a beg:68 end:91 pic:3' TCGGATAGGACCTAATGAACTT 5'& .|| ..|| |||||||| &5' GGCAGAGTTTGTA-TACTTGAA 3' Rnf149 mmu-miR-26b beg:393 end:410 pic:3' TGGATAGGACTTAATGAACTT 5'& ||| |||||.| &5' -------CTGTAGAACTTGGA 3' Rnf149 mmu-miR-26b beg:68 end:91 pic:3' TGGATAGGACTTAATGAACTT 5'& .| ..|| |||||||| &5' GCAGAGTTTGTA-TACTTGAA 3' Rnf149 mmu-miR-27a beg:976 end:998 pic:3' CGCCTTGAATCGG--------TGACACTT 5'& |||| ||||||| &5' ---------AGCCGATTCAATACTGTGA- 3' Rnf149 mmu-miR-27a beg:430 end:448 pic:3' CGCCTTGAATCGG-TGACACTT 5'& |.|| || ||||||. &5' GTGGT-----GCAAACTGTGG- 3' Rnf149 mmu-miR-27b beg:427 end:449 pic:3' CGTCTTGAATCGG-TGACACTT 5'& |||| || ||||||. &5' GCAGTGGT--GCAAACTGTGG- 3' Rnf149 mmu-miR-27b beg:976 end:998 pic:3' CGTCTTGAATCGG--------TGACACTT 5'& |||| ||||||| &5' ---------AGCCGATTCAATACTGTGA- 3' Rnf149 mmu-miR-302b beg:814 end:836 pic:3' GATGATTTTGTACCTTCGTGAAT 5'& |.|||||.||||| ||.| &5' --ATTAAAATATGGATTCATT-- 3' Rnf149 mmu-miR-302bstar beg:326 end:348 pic:3' TCTTTCGTAAGGGTACAATTTCA 5'& |.||| ||. |||.|||| &5' --AGAGCTCA-CCGAGTTGAAGT 3' Rnf149 mmu-miR-343 beg:535 end:560 pic:3' AGACCCGTGTACT-----TCCCTCT 5'& | ||| || ||||||| &5' ---GAGCAAGAGAGAGAGAGGGAGA 3' Rnf149 mmu-miR-3470a beg:738 end:758 pic:3' GGT-CGGACCAGATGTTTCACT 5'& ||| |..| |||||||| &5' CCATGTTTT-TCTACAAA---- 3' Rnf149 mmu-miR-350 beg:638 end:657 pic:3' CTTTCACATAC-CCGAAACACTT 5'& |||| || ||||||| &5' -------TATGTGGAATTGTGAA 3' Rnf149 mmu-miR-363 beg:340 end:361 pic:3' ATGTCTACCTATGGCACGTTAA 5'& || | |. |||.|.|| &5' ----GAAGTGTGAAGTGTAGTT 3' Rnf149 mmu-miR-376astar beg:714 end:742 pic:3' TGAGTA----TCTTCCTCTTAGATGG 5'& |||.. |||||| ||||.||.| &5' ACTTGGAAGGAGAAGG-GAATTTATC 3' Rnf149 mmu-miR-376b beg:664 end:681 pic:3' TTCACCTACAAGGAGATACTA 5'& |||| .|.|||||| &5' -----GATGA--TTTTATGAT 3' Rnf149 mmu-miR-377 beg:335 end:352 pic:3' TGTTTTCAACGGAAACACACTA 5'& .||||| |||||| &5' ----GAGTTGAA---GTGTGA- 3' Rnf149 mmu-miR-379 beg:178 end:202 pic:3' GGATGCAAGGTATC-AGATGGT 5'& ||| ||.|| |||||.| &5' CCTTCA-TCTATTTATCTACTA 3' Rnf149 mmu-miR-423-3p beg:8 end:34 pic:3' TGACTCCCCGGAGT--CTGGCTCGA 5'& ||||| |||||| ||| |||| &5' ACTGACA-GCCTCACCGACAGAGC- 3' Rnf149 mmu-miR-450b-5p beg:380 end:404 pic:3' ATAAGTCCTTGTA--TGACGTTTT 5'& || ||.|. ||||.|.|| &5' ---TCCTGAGCGGAGACTGTAGAA 3' Rnf149 mmu-miR-452 beg:1134 end:1153 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |||| ||.||.|.||| &5' GTCTA------CTTTGTAGACA 3' Rnf149 mmu-miR-452 beg:428 end:444 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |||| ||||||| &5' ----CAGTGG----TGCAAAC- 3' Rnf149 mmu-miR-467e beg:709 end:722 pic:3' TGTATATGTACGAGTGTGAATA 5'& .||||||||. &5' -----------TTCACACTTG- 3' Rnf149 mmu-miR-485 beg:274 end:288 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& | |.||||||| &5' -----------GACTAGCCTCT 3' Rnf149 mmu-miR-485 beg:3 end:23 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& || |||| | ||||||| &5' ----TCCTCACTGACAGCCTC- 3' Rnf149 mmu-miR-493 beg:986 end:1003 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& |.|| || ||||||. &5' ------ATACTGT--GACCTTT- 3' Rnf149 mmu-miR-499 beg:848 end:868 pic:3' TTTGTAGTGACGTT-CAGAATT 5'& |..|| .|| |.|| ||||| &5' AGGCA-TACAGTAATGTCTT-- 3' Rnf149 mmu-miR-582-5p beg:383 end:401 pic:3' TCATTGACCAACTTG---TTGACAT 5'& |||.| .|||||| &5' ----------TGAGCGGAGACTGTA 3' Rnf149 mmu-miR-669e beg:35 end:52 pic:3' TACTTGTACGTGTGTGTTCTGT 5'& || |||.|||| &5' --------GCTTGAACAGGACA 3' Rnf149 mmu-miR-672 beg:267 end:287 pic:3' AGTGTGTGTCATG---TGGTTGGAGT 5'& ||||| ||.|.|||| &5' --------AGTACTAGACTAGCCTC- 3' Rnf149 mmu-miR-674star beg:474 end:491 pic:3' AACAAGACTCTACCCTCGACAC 5'& ||| |.|||||| &5' -----CTGCTTC--GGGCTGTG 3' Rnf149 mmu-miR-674star beg:585 end:605 pic:3' AACAAGACTCTACC---CTCGACAC 5'& || ||| |||||||| &5' --------AGCTGGCTTGAGCTGTG 3' Rnf149 mmu-miR-676 beg:5 end:29 pic:3' TCGAGT---TGTTGGAGTC-CTGCC 5'& |||| |||.||||| ||| &5' --CTCACTGACAGCCTCACCGAC-- 3' Rnf149 mmu-miR-677 beg:2 end:16 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& ||| ||||||| &5' ----------ATCCTCACTGA- 3' Rnf149 mmu-miR-684 beg:543 end:562 pic:3' AACTGAACTTCCCTTTTGA 5'& || .|||||.|.| &5' --GAGAGAGAGGGAGAGC- 3' Rnf149 mmu-miR-690 beg:174 end:185 pic:3' AAACCAACACTCGGATCGGAAA 5'& .||||||| &5' -------------TTAGCCTT- 3' Rnf149 mmu-miR-692 beg:506 end:524 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& ||| |.| |.||||| &5' -----AGGGGTTAAGAGAGA- 3' Rnf149 mmu-miR-692 beg:527 end:550 pic:3' CTCACTC-CGCGAGTTTCTCTA 5'& ||| ||| | || |.||||| &5' GAGAGAGAGAGCA-AGAGAGA- 3' Rnf149 mmu-miR-743a beg:853 end:869 pic:3' AGATGAGTCGAACCACAGAAAG 5'& |||. ||||||| &5' ------CAGTAA--TGTCTTT- 3' Rnf149 mmu-miR-743b-3p beg:853 end:869 pic:3' AGATAAGTCGTACTACAGAAAG 5'& |||.| |||||||| &5' ------CAGTA--ATGTCTTT- 3' Rnf149 mmu-miR-767 beg:419 end:441 pic:3' ACGA-GTCTGTTGGTACCACGT 5'& ||| ..|.|| .||||||| &5' TGCCGTGGGCA---GTGGTGCA 3' Rnf149 mmu-miR-802 beg:1098 end:1118 pic:3' TTCCTACTTAGA-AACAATGACT 5'& ||.|| |||||..||| &5' ------GAGTCCATTGTTGTTGA 3' Rnf149 mmu-miR-871 beg:252 end:274 pic:3' GTACTGACCGTGATTAGACTTAT 5'& || ||. |||||.|| &5' ---GAGGGGTTGTT-TCTGAGTA 3' Rnf149 mmu-miR-872 beg:980 end:1002 pic:3' GGACTTGATTGTT-CATTGGAA 5'& || ||.| ||.||||| &5' ---GATTCAATACTGTGACCTT 3' Rnf149 mmu-miR-876-5p beg:410 end:422 pic:3' ATCACTAAGTGTCTCTTTAGGT 5'& ||||||||. &5' ------------GAGAAATCT- 3' Rnf149 mmu-miR-879 beg:1027 end:1046 pic:3' CCGAATCTCGATA---TTCGGAGA 5'& |||. |||.||.| &5' --------GCTGGTGAAAGTCTTT 3' Rnf149 mmu-miR-31 beg:408 end:426 pic:3' GTCGATACGGTCGTAGAACGGA 5'& ||| |||||||| &5' -----ATGAGAA-ATCTTGCC- 3' Rnf149 mmu-miR-1948 beg:695 end:706 pic:3' GACATGCTCACGAGACGGATTT 5'& .||||||| &5' -------------TTGCCTAA- 3' Rnf149 mmu-miR-1949 beg:279 end:296 pic:3' TTGATACGACTGTAGG-ACCATATC 5'& .| ||. ||||||| &5' ----------GCCTCTGTGGTATA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf149 RAID00006727 mmu-miR-539-3p miRNA MIMAT0017208 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6308 Rnf149 RAID00044696 mmu-miR-140-3p miRNA MIMAT0000152 Rnf149 mRNA 67702 Prediction 0.2202 Rnf149 RAID00074869 mmu-let-7i-5p miRNA MIMAT0000122 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID00207014 mmu-miR-488-3p miRNA MIMAT0003450 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6559 Rnf149 RAID00209070 mmu-miR-27a-3p miRNA MIMAT0000537 Rnf149 lncRNA 67702 CLIP-seq 0.5483 Rnf149 RAID00231124 mmu-miR-743b-3p miRNA MIMAT0004840 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID00235228 mmu-miR-155-5p miRNA MIMAT0000165 Rnf149 mRNA 67702 Prediction 0.2202 Rnf149 RAID00271151 mmu-miR-7050-3p miRNA MIMAT0028005 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID00296264 mmu-miR-27a-3p miRNA MIMAT0000537 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6478 Rnf149 RAID00334931 mmu-let-7f-2-3p miRNA MIMAT0017017 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID00341866 mmu-miR-206-3p miRNA MIMAT0000239 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6308 Rnf149 RAID00361572 mmu-miR-212-3p miRNA MIMAT0000659 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID00403916 mmu-miR-124-3p miRNA MIMAT0000134 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6308 Rnf149 RAID00531487 mmu-miR-381-3p miRNA MIMAT0000746 Rnf149 mRNA 67702 CLIP-seq 0.5483 Rnf149 RAID00584282 mmu-miR-5624-5p miRNA MIMAT0022377 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID00838860 mmu-let-7f-5p miRNA MIMAT0000525 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID00854880 mmu-miR-132-3p miRNA MIMAT0000144 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID00946572 mmu-miR-144-3p miRNA MIMAT0000156 Rnf149 lncRNA 67702 CLIP-seq 0.5483 Rnf149 RAID00985026 mmu-miR-542-3p miRNA MIMAT0003172 Rnf149 mRNA 67702 Prediction 0.2381 Rnf149 RAID00999303 mmu-miR-26b-5p miRNA MIMAT0000534 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6478 Rnf149 RAID01021846 mmu-miR-7069-3p miRNA MIMAT0028045 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01033512 mmu-miR-6935-3p miRNA MIMAT0027771 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01110367 mmu-miR-411-5p miRNA MIMAT0004747 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6559 Rnf149 RAID01153529 mmu-miR-6991-3p miRNA MIMAT0027885 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01153729 mmu-miR-494-3p miRNA MIMAT0003182 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6308 Rnf149 RAID01162574 mmu-miR-376c-3p miRNA MIMAT0003183 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6308 Rnf149 RAID01168759 mmu-miR-3065-5p miRNA MIMAT0014836 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01328483 mmu-miR-431-5p miRNA MIMAT0001418 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01340674 mmu-miR-1193-3p miRNA MIMAT0005851 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01413031 mmu-miR-24-1-5p miRNA MIMAT0000218 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01458249 mmu-miR-7092-3p miRNA MIMAT0028091 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01502369 mmu-miR-499-5p miRNA MIMAT0003482 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01543311 mmu-miR-421-3p miRNA MIMAT0004869 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01655523 mmu-miR-129b-3p miRNA MIMAT0029863 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01672926 mmu-miR-181d-5p miRNA MIMAT0004324 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01692429 mmu-miR-7119-3p miRNA MIMAT0028136 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01737940 mmu-miR-125a-5p miRNA MIMAT0000135 Rnf149 mRNA 67702 RIP-seq//RNA-seq 0.6606 Rnf149 RAID01806384 mmu-miR-181a-5p miRNA MIMAT0000210 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID01890692 mmu-miR-216b-5p miRNA MIMAT0003729 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6308 Rnf149 RAID02007730 mmu-miR-690 miRNA MIMAT0003469 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02031263 mmu-miR-181c-5p miRNA MIMAT0000674 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02046924 mmu-miR-880-5p miRNA MIMAT0017266 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02142716 mmu-let-7d-5p miRNA MIMAT0000383 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02150250 mmu-miR-5709-3p miRNA MIMAT0027104 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02263459 mmu-miR-18a-3p miRNA MIMAT0004626 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02313040 mmu-miR-129-5p miRNA MIMAT0000209 Rnf149 mRNA 67702 Prediction 0.2202 Rnf149 RAID02480378 mmu-miR-743a-3p miRNA MIMAT0004238 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02495062 mmu-miR-125a-3p miRNA MIMAT0004528 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02514464 mmu-miR-129-1-3p miRNA MIMAT0016994 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02518255 mmu-miR-411-5p miRNA MIMAT0004747 Rnf149 lncRNA 67702 CLIP-seq 0.5483 Rnf149 RAID02541938 mmu-miR-218-1-3p miRNA MIMAT0004665 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02595221 mmu-miR-483-3p miRNA MIMAT0003120 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02609475 mmu-miR-6343 miRNA MIMAT0025086 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02653213 mmu-miR-203-3p miRNA MIMAT0000236 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6308 Rnf149 RAID02669265 mmu-miR-1948-3p miRNA MIMAT0009415 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02706742 mmu-miR-3112-3p miRNA MIMAT0014956 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02732391 mmu-miR-206-3p miRNA MIMAT0000239 Rnf149 lncRNA 67702 CLIP-seq 0.5483 Rnf149 RAID02753586 mmu-miR-3071-5p miRNA MIMAT0014850 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02822031 mmu-miR-7241-3p miRNA MIMAT0028451 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID02889728 mmu-miR-27b-3p miRNA MIMAT0000126 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6478 Rnf149 RAID02952094 mmu-miR-1a-3p miRNA MIMAT0000123 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6308 Rnf149 RAID03003030 mmu-miR-31-5p miRNA MIMAT0000538 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03063666 mmu-miR-485-5p miRNA MIMAT0003128 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03083360 mmu-miR-497b miRNA MIMAT0031404 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03132085 mmu-miR-26a-5p miRNA MIMAT0000533 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6308 Rnf149 RAID03281466 mmu-miR-466m-3p miRNA MIMAT0014883 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03446084 mmu-miR-1a-3p miRNA MIMAT0000123 Rnf149 lncRNA 67702 CLIP-seq 0.5483 Rnf149 RAID03531472 mmu-miR-27b-3p miRNA MIMAT0000126 Rnf149 lncRNA 67702 CLIP-seq 0.5483 Rnf149 RAID03537137 mmu-miR-466l-3p miRNA MIMAT0005830 Rnf149 mRNA 67702 Prediction 0.2202 Rnf149 RAID03616900 mmu-miR-471-3p miRNA MIMAT0017195 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03636624 mmu-miR-216b-5p miRNA MIMAT0003729 Rnf149 lncRNA 67702 CLIP-seq 0.5483 Rnf149 RAID03658914 mmu-miR-125b-5p miRNA MIMAT0000136 Rnf149 mRNA 67702 RIP-seq//RNA-seq 0.6606 Rnf149 RAID03662740 mmu-miR-129-2-3p miRNA MIMAT0000544 Rnf149 mRNA 67702 Prediction 0.2202 Rnf149 RAID03680972 mmu-miR-7229-5p miRNA MIMAT0028426 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03743855 mmu-miR-144-3p miRNA MIMAT0000156 Rnf149 mRNA 67702 CLIP-seq//Prediction 0.6308 Rnf149 RAID03745099 mmu-miR-466o-3p miRNA MIMAT0014886 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03790041 mmu-miR-6984-5p miRNA MIMAT0027870 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03820840 mmu-miR-139-5p miRNA MIMAT0000656 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03880303 mmu-miR-24-2-5p miRNA MIMAT0005440 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03967471 mmu-miR-496a-3p miRNA MIMAT0003738 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03980493 mmu-miR-496b miRNA MIMAT0025158 Rnf149 mRNA 67702 Prediction 0.1828 Rnf149 RAID03984812 mmu-miR-370-5p miRNA MIMAT0017174 Rnf149 mRNA 67702 Prediction 0.1828