DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004533 mmu-miR-141* 244179 Ubqlnl agguuGUGAC--GU---GACCUUCUAc ||||| || ||||||||| uagcuCACUGGUCAUGGCUGGAAGAUc 2 18 138 164 [mm9:7:111296806-111296832:-] 0.6167 155 7 -19.85 -0.7388 MIMAT0000230 mmu-miR-199a-3p 244179 Ubqlnl auuGGUUACACGUCUGAUGACa || || ||| |||||| cuuCCCAUCUGCUUUCUACUGc 2 20 10 31 [mm9:7:111296939-111296960:-] 0.6158 131 6 -15.37 -0.1160 MIMAT0000240 mmu-miR-207 244179 Ubqlnl cucccuccucUCGGUCCUCUUCg | |::||||||| ugauguuuccAACUGGGAGAAGu 2 14 76 98 [mm9:7:111296872-111296894:-] 0.6167 149 7 -17.35 -0.4011 MIMAT0004628 mmu-miR-21* 244179 Ubqlnl cuGUCGGGUAGCUGACG-ACAAc | ||:: || ||||| |||| auCUGCUU-UCUACUGCAUGUUg 2 21 16 37 [mm9:7:111296933-111296954:-] 0.6167 126 0 -19.00 -0.5032 MIMAT0004638 mmu-miR-323-5p 244179 Ubqlnl cgCUUGC-GCGGUG---CCUGGUGGa | |:| :| ||| ||||||| cuGCAUGUUGACACAUUUGACCACCu 2 21 28 53 [mm9:7:111296917-111296942:-] 0.6167 142 7 -20.75 -1.0888 MIMAT0004640 mmu-miR-325 244179 Ubqlnl aaCUAUCCUCCACG-AGUUAUUu | |:| || | : ||||||| ugGCUGGAAGAUCUGUCAAUAAa 2 21 152 174 [mm9:7:111296796-111296818:-] 0.6167 151 7 -11.93 -0.9660 MIMAT0004667 mmu-miR-199b 244179 Ubqlnl auuGGUUACACGUCUGAUGACa || || ||| |||||| cuuCCCAUCUGCUUUCUACUGc 2 20 10 31 [mm9:7:111296939-111296960:-] 0.6158 131 6 -15.37 -0.1160 MIMAT0003451 mmu-miR-677 244179 Ubqlnl agUCUUCGAUUAGU----AG-UGACUu |||| | ||||| || ||||| ggAGAAACCAAUCAAUGCUCAACUGAa 2 21 108 134 [mm9:7:111296836-111296862:-] 0.6167 127 0 -13.73 -1.1012 MIMAT0003481 mmu-miR-695 244179 Ubqlnl aagucaguggauacgGGUUAGa |||||| cuggaacaggagaaaCCAAUCa 2 8 100 121 [mm9:7:111296849-111296870:-] 0.6167 120 6 -11.17 -0.1055 MIMAT0004891 mmu-miR-509-3p 244179 Ubqlnl gguaaugUCUUUACAGUUAgu ||| ||||||| ggcuggaAGAUCUGUCAAUaa 3 15 153 173 [mm9:7:111296797-111296817:-] 0.6167 134 0 -10.71 -0.1058 MIMAT0005291 mmu-miR-582-5p 244179 Ubqlnl ucauugaccaACUUGUUGACau || |||||| aaccaaucaaUGCUCAACUGaa 3 13 113 134 [mm9:7:111296836-111296857:-] 0.6167 124 0 -8.81 -0.1012 MIMAT0005842 mmu-miR-669h-3p 244179 Ubqlnl acacGUACAC-ACAUAU-ACGUAu ||| || | | || ||||| uuccCAUCUGCUUUCUACUGCAUg 2 19 11 34 [mm9:7:111296936-111296959:-] 0.6158 121 0 -6.66 -0.7540 MIMAT0009431 mmu-miR-1958 244179 Ubqlnl ugaauGACG--AAGG-U-GAAAGGAu |||| |||| | ||||||| cucacCUGCCUUUCCUACCUUUCCUg 2 18 52 77 [mm9:7:111296893-111296918:-] 0.6167 154 7 -19.81 -0.7077 MIMAT0012772 mmu-miR-599 244179 Ubqlnl caaacuaUUUGACUGUGUu | ::||||||| cuacugcAUGUUGACACAu 2 13 25 43 [mm9:7:111296927-111296945:-] 0.6167 144 7 -10.61 -0.9966 MIMAT0004528 mmu-miR-125a-3p 244179 Ubqlnl ccGAGGGUUCUUGGAGUGGACa | ::::| |||||||||| caCAUUUGACCACCUCACCUGc 2 21 39 60 [mm9:7:111296910-111296931:-] 0.6167 160 7 -20.94 -0.4120 MIMAT0000155 mmu-miR-142-3p 244179 Ubqlnl aggUAUUUCAUCCUUUGU-GAUGu ||||| || ||| |||| ucaAUAAAAAUGGCUACACCUACu 2 21 167 190 [mm9:7:111296780-111296803:-] 0.6167 124 0 -11.38 -1.0984 MIMAT0000582 mmu-miR-338-3p 244179 Ubqlnl guUGUUUUAGUGAC---UA-CGACCu || |: |||||| || ||||| auACUAGCUCACUGGUCAUGGCUGGa 2 21 134 159 [mm9:7:111296811-111296836:-] 0.6167 127 0 -21.47 -0.9920 MIMAT0000677 mmu-miR-7a 244179 Ubqlnl uguuguuuuaGUGAU-CAGAAGGu ||:|| ||||||| ---------cCAUUAUGUCUUCCc 2 14 1 15 [mm9:7:111296955-111296969:-] 0.6149 152 7 -15.22 -0.2533 MIMAT0000678 mmu-miR-7b 244179 Ubqlnl uguuguuuuaGU-GUUCAGAAGGu || :| ||||||| ---------cCAUUAUGUCUUCCc 2 14 1 15 [mm9:7:111296955-111296969:-] 0.6149 144 7 -12.13 -0.2533 MIMAT0004747 mmu-miR-411 244179 Ubqlnl gcaugcgauaugccAGAUGAu |||||| cuucccaucugcuuUCUACUg 2 8 10 30 [mm9:7:111296940-111296960:-] 0.6158 120 6 -10.16 -0.1003 MIMAT0003182 mmu-miR-494 244179 Ubqlnl cuccAAAGGGCACAUACAAAGu |||||:| ||||||| uaccUUUCCUG---AUGUUUCc 2 19 67 85 [mm9:7:111296885-111296903:-] 0.6167 154 7 -13.76 -0.3792 MIMAT0003513 mmu-miR-505 244179 Ubqlnl ucuuuuGGUCGUUCACAACUGc |:| :: ||||||| ugcuuuCUACUGCAUGUUGACa 2 17 19 40 [mm9:7:111296930-111296951:-] 0.6167 144 7 -12.17 -1.1160

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G098650 Ubqlnl Mus musculus 244179

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ubqlnl mmu-miR-494 beg:68 end:85 pic:3' CTCCAAAGGGCACATACAAAGT 5'& |||||.| ||||||| &5' ----TTTCCTG---ATGTTTC- 3' Ubqlnl mghv-miR-M1-3 beg:45 end:59 pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& || ||||||| &5' ----------CCACCTCACCT- 3' Ubqlnl mmu-miR-1958 beg:54 end:78 pic:3' TGAATGACG--AAGGT--GAAAGGAT 5'& |||| |||| |||||||. &5' -----CTGCCTTTCCTACCTTTCCTG 3' Ubqlnl mmu-miR-141star beg:147 end:164 pic:3' AGGTTGTGACGTGACCTTCTAC 5'& ||. .||||||||| &5' -----CATG--GCTGGAAGAT- 3' Ubqlnl mmu-miR-7a beg:0 end:15 pic:3' TGTTGTTTTAGTGAT-CAGAAGGT 5'& ||.|| ||||||| &5' ----------CATTATGTCTTCC- 3' Ubqlnl mmu-miR-7b beg:0 end:15 pic:3' TGTTGTTTTAGTGTT-CAGAAGGT 5'& ||. ||||||| &5' ----------CATTATGTCTTCC- 3' Ubqlnl mmu-let-7c beg:47 end:73 pic:3' TTGGTATGT-TGGAT--GATGGAGT 5'& ||| || .||| ||||||. &5' -ACCTCACCTGCCTTTCCTACCTT- 3' Ubqlnl mmu-let-7d beg:56 end:74 pic:3' TTGATACGTTGGAT--GATGGAGA 5'& .||| ||||||.| &5' ---------GCCTTTCCTACCTTT 3' Ubqlnl mmu-let-7e beg:44 end:64 pic:3' TTGATATGTTGGA--GGATGGAGT 5'& || |||| |||.|||. &5' ------ACCACCTCACCTGCCTT- 3' Ubqlnl mmu-miR-125a-3p beg:40 end:60 pic:3' CCGAGGGTTCTTGGAGTGGACA 5'& .. | |||||||||| &5' ----TTTGACCACCTCACCTG- 3' Ubqlnl mmu-miR-145 beg:142 end:160 pic:3' TCCCTAAGGACCCTT-TTGACCTG 5'& |||| ..||||| &5' --------CTGGTCATGGCTGGA- 3' Ubqlnl mmu-miR-150 beg:86 end:96 pic:3' GTGACCATGTTCCCAACCCTCT 5'& ||||||| &5' ---------------TGGGAGA 3' Ubqlnl mmu-miR-1894-5p beg:87 end:96 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& |||||| &5' ---------------GGGAGA- 3' Ubqlnl mmu-miR-1929 beg:85 end:106 pic:3' GAGACGAGATA--TTTCAGGATCTT 5'& ||. .|||||||.||| &5' -------CTGGGAGAAGTCCTGGAA 3' Ubqlnl mmu-miR-1940 beg:54 end:86 pic:3' TTGACG---AGG-TGGAAGAGTCA--GGAGGTA 5'& |||| ||| ||||| | ..|||| &5' --CTGCCTTTCCTACCTTTCCTGATGTTTCCA- 3' Ubqlnl mmu-miR-1951 beg:11 end:32 pic:3' ATCGGTGTGGTC-AGAGGTGATG 5'& || ||.| | |.||.|||.| &5' ---CC-CATCTGCTTTCTACTGC 3' Ubqlnl mmu-miR-1953 beg:53 end:69 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& |||| ||||||.| &5' ------CCTGC---CTTTCCTA 3' Ubqlnl mmu-miR-1961 beg:54 end:73 pic:3' AAGATTGAT--GATGGAGT 5'& ||. || ||||||. &5' --CTGCCTTTCCTACCTT- 3' Ubqlnl mmu-miR-1970 beg:21 end:43 pic:3' GTTTCGGATAGGGGT-C-ACTGTGT 5'& .||| |. || | ||||||| &5' -----TCTA-CTGCATGTTGACACA 3' Ubqlnl mmu-miR-202-3p beg:6 end:32 pic:3' AGAAGGGTACGCGAT--ATGGAGA 5'& ||||||||| .||| |||. | &5' TCTTCCCATCTGCTTTCTACTGC- 3' Ubqlnl mmu-miR-2132 beg:41 end:62 pic:3' GTAGCGCAGTT-GTGGGCGG 5'& |.| ||||.||| &5' --TTGACCACCTCACCTGCC 3' Ubqlnl mmu-miR-30c-2star beg:56 end:69 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& ||| |.|||.| &5' ----------GCC-TTTCCTA- 3' Ubqlnl mmu-miR-327 beg:48 end:66 pic:3' TAGGAGT--ACGGGGAGTTCA 5'& ||||| ||||..|| &5' --CCTCACCTGCCTTTC---- 3' Ubqlnl mmu-miR-423-5p beg:48 end:66 pic:3' TTTCAGAGCGAGA-GACGGGGAGT 5'& | ||| |||||..|| &5' -------C-CTCACCTGCCTTTC- 3' Ubqlnl mmu-miR-431star beg:91 end:117 pic:3' TCTTCGGGAC---GTTCTGC-TGGAC 5'& |||||.|||| ||.|| ||| &5' AGAAGTCCTGGAACAGGAGAAACC-- 3' Ubqlnl mmu-miR-450b-3p beg:74 end:88 pic:3' TACGTACGTTTTACAAGGGTTA 5'& .|||||.|||| &5' ----------GATGTTTCCAA- 3' Ubqlnl mmu-miR-496 beg:112 end:129 pic:3' CTCTAACCGGTACATTATGAGT 5'& ||| |||.|||| &5' --------CCAATCAATGCTCA 3' Ubqlnl mmu-miR-505 beg:24 end:40 pic:3' TCTTTTGGTCGTTCACAACTGC 5'& ||. ||| ||||||| &5' -----ACT-GCA--TGTTGAC- 3' Ubqlnl mmu-miR-709 beg:48 end:71 pic:3' AGGA--GGACGGAGACGGA-GG 5'& ||| |||||||.| ||| || &5' -CCTCACCTGCCTTT-CCTACC 3' Ubqlnl mmu-miR-599 beg:32 end:43 pic:3' CAAACTATTTGACTGTGTT 5'& .||||||| &5' ----------TTGACACA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubqlnl RAID00134203 mmu-miR-125a-3p miRNA MIMAT0004528 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID00183269 mmu-miR-323-5p miRNA MIMAT0004638 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID00374195 mmu-miR-7683-3p miRNA MIMAT0029887 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID00398803 mmu-miR-1955-3p miRNA MIMAT0017348 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID00541851 mmu-mir-325 miRNA MI0000597 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID01131440 mmu-miR-7087-5p miRNA MIMAT0028080 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID01141831 mmu-miR-411-5p miRNA MIMAT0004747 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID01144051 mmu-miR-7025-5p miRNA MIMAT0027954 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID01660766 mmu-miR-471-3p miRNA MIMAT0017195 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID01725377 mmu-miR-325-3p miRNA MIMAT0004640 Ubqlnl mRNA 244179 Prediction 0.2202 Ubqlnl RAID01908433 mmu-miR-7b-5p miRNA MIMAT0000678 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID02004697 mmu-miR-7027-5p miRNA MIMAT0027958 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID02307931 mmu-miR-7010-5p miRNA MIMAT0027924 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID02513816 mmu-miR-7220-5p miRNA MIMAT0028408 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID02650783 mmu-miR-505-3p miRNA MIMAT0003513 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID02903606 mmu-miR-7a-5p miRNA MIMAT0000677 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID03072155 mmu-miR-599 miRNA MIMAT0012772 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID03082101 mmu-miR-338-3p miRNA MIMAT0000582 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID03365021 mmu-miR-1958 miRNA MIMAT0009431 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID03532777 mmu-miR-142a-3p miRNA MIMAT0000155 Ubqlnl mRNA 244179 Prediction 0.1828 Ubqlnl RAID03542971 mmu-miR-494-3p miRNA MIMAT0003182 Ubqlnl mRNA 244179 Prediction 0.2202 Ubqlnl RAID03591342 mmu-miR-7065-5p miRNA MIMAT0028034 Ubqlnl mRNA 244179 Prediction 0.1828