Ubqln3
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0004523mmu-miR-29b*244178Ubqln3auUUGGUGGUAUACUUUGGUcg |:|::| ||| |||||| acAGCUGCACUAU-AAACCAaa32182102[mm9:7:111289317-111289337:-]0.63341380-11.51-0.3133
MIMAT0004533mmu-miR-141*244178Ubqln3agguugugacgugaCCUUCUAc ||||||| ucuggagucaauaaGGAAGAUg29136157[mm9:7:111289262-111289283:-]0.63341407-16.07-1.0671
MIMAT0004537mmu-miR-154*244178Ubqln3uuauccaguuggcacAUACUAa |||||| uauaaaccaaauuacUAUGAUg2892113[mm9:7:111289306-111289327:-]0.63341206-5.67-0.2406
MIMAT0000374mmu-miR-296-5p244178Ubqln3uguccuAACUCCCCCCCGGGa || | ||||||| cacucuUUUACCUGGGGCCCu216206226[mm9:7:111289193-111289213:-]0.64651437-18.26-1.0187
MIMAT0000377mmu-miR-299*244178Ubqln3uacauacacccugccAUUUGGu |||||| aauacagcugcacuaUAAACCa2879100[mm9:7:111289319-111289340:-]0.63341206-7.87-0.3044
MIMAT0004640mmu-miR-325244178Ubqln3aacuauccuCCACGAGUUAUUu || | ||||||| caauguucuGGAG-UCAAUAAg214130150[mm9:7:111289269-111289289:-]0.63341437-12.17-0.2961
MIMAT0003166mmu-miR-546244178Ubqln3cuGAGGCACGGUGGua :|: |||||||| ucUUUAGUGCCACC--315269282[mm9:7:111289137-111289150:-]0.64651340-17.63-0.1531
MIMAT0003167mmu-miR-540-3p244178Ubqln3ggucCUAGCUGGAGAC-UGGa || :|| :|||| ||| ccuuGAAUGAGUUCUGUACCu217224244[mm9:7:111289175-111289195:-]0.64651200-20.88-1.0719
MIMAT0003896mmu-miR-763244178Ubqln3cggugaccaagaaggGUCGACc |||||| uccuauucuugaauaCAGCUGc286889[mm9:7:111289330-111289351:-]0.63341206-13.31-0.2344
MIMAT0003457mmu-miR-680244178Ubqln3ggGGGUACAGUCGUCUACGgg ||:|| |:: |||||| uaCCUAUCUUG--AGAUGCaa320240258[mm9:7:111289161-111289179:-]0.64651320-14.07-0.1240
MIMAT0003498mmu-miR-708*244178Ubqln3gaucuucgagugUC-AGAUCAAc || ||||||| -----------gAGCUCUAGUUa211112[mm9:7:111289407-111289418:-]0.68891417-8.96-0.8608
MIMAT0004840mmu-miR-743b-3p244178Ubqln3agaUAAGUCGUACUAC-AGAAAg | |:| :|||||| ||||| ccaAAUUACUAUGAUGUUCUUUa22098120[mm9:7:111289299-111289321:-]0.63341350-13.06-1.1620
MIMAT0004844mmu-miR-880244178Ubqln3agaugagucucuccuACCUCAu |||||| guggagacaauguucUGGAGUc28123144[mm9:7:111289275-111289296:-]0.63341206-10.33-0.1240
MIMAT0004883mmu-miR-466g244178Ubqln3acacacACGUACAC-AGACAUa || ||| | |||||| ggcccuUGAAUGAGUUCUGUAc216221242[mm9:7:111289177-111289198:-]0.64651236-8.27-0.8680
MIMAT0004890mmu-miR-509-5p244178Ubqln3uacuaacGGUGUAAGACCUCAu | |::||||||||| guggagaCAAUGUUCUGGAGUc216123144[mm9:7:111289275-111289296:-]0.63341597-17.37-1.0318
MIMAT0004935mmu-miR-872*244178Ubqln3ucCUCCGAUGACGUUA-UCAAGu |:||| :|| ||| ||||| cuGGGGCCCUUG-AAUGAGUUCu221217238[mm9:7:111289181-111289202:-]0.64651260-16.79-0.8692
MIMAT0005291mmu-miR-582-5p244178Ubqln3ucauUGAC-CAACUUGUUGACAu :||| || ||||||| ggauGCUGUGUAAUCCAACUGUg219178200[mm9:7:111289219-111289241:-]0.63341457-15.60-0.2778
MIMAT0005847mmu-miR-1190244178Ubqln3cugucuccccuuggaGUCGACu |||||| uccuauucuugaauaCAGCUGc286889[mm9:7:111289330-111289351:-]0.63341206-11.76-0.2387
MIMAT0009423mmu-miR-1952244178Ubqln3gucuuccuccCACCUCu |||||| guucuuuacuGUGGAGa28113129[mm9:7:111289290-111289306:-]0.63341206-11.37-0.1185
MIMAT0009424mmu-miR-1953244178Ubqln3gucuucggacucuuGAAAGGGu ||||||| cuuuuccuuucugcCUUUCCCc292546[mm9:7:111289373-111289394:-]0.63341407-13.24-0.6265
MIMAT0009441mmu-miR-1968244178Ubqln3ucAGGUGGUAGGAAU---UGUCGACGu ||: |:||:|||: |||||||| guUCUCCUAUUCUUGAAUACAGCUGCa2236490[mm9:7:111289329-111289355:-]0.63341697-28.37-1.3205
MIMAT0009461mmu-miR-1982.2244178Ubqln3gacacccUCUUGUAUCCCACu |||| |||||||| agaagccAGAA-AUAGGGUGg215158177[mm9:7:111289242-111289261:-]0.63341567-17.45-0.6210
MIMAT0011216mmu-miR-2140244178Ubqln3uggugguUCUAGACGUGGa | | ||||||: cuugaauACAGCUGCACUa2137593[mm9:7:111289326-111289344:-]0.63341280-10.50-0.2556
MIMAT0011222mmu-miR-2146244178Ubqln3guguaccuUGGG---AAGAGGug |||| |||||| gucuuauuACCCUAGUUCUCCua3135072[mm9:7:111289347-111289369:-]0.63341230-13.99-0.1475
MIMAT0000141mmu-miR-130a244178Ubqln3uacGGGAAAAU-UGU-AACGUGAc ::||| | ||| |||||| cuaUUCUUGAAUACAGCUGCACUa2207093[mm9:7:111289326-111289349:-]0.63341216-13.44-0.2780
MIMAT0000142mmu-miR-9244178Ubqln3agUAUGUCGAU---CUA-UUGGUUUcu ||||||||: || ||||||| gaAUACAGCUGCACUAUAAACCAAAuu32278104[mm9:7:111289315-111289341:-]0.63341470-16.90-0.1443
MIMAT0000149mmu-miR-137244178Ubqln3gaugcgcAUAAGAAUUC-GUUAUu |:|||| :|| ||||| gagacaaUGUUCUGGAGUCAAUAa217126149[mm9:7:111289270-111289293:-]0.63341280-11.95-0.8258
MIMAT0000158mmu-miR-146a244178Ubqln3uuGGGUAC--CUUAA----GUCAAGAGu |||||| ||| :||||||| ccCCCAUGUCUUAUUACCCUAGUUCUCc2214370[mm9:7:111289349-111289376:-]0.63341467-18.93-1.0305
MIMAT0000212mmu-miR-183244178Ubqln3ucacuUAAGAUGGUCACGGUau | ||| ::||||||| cauccAGUCU-UUAGUGCCAcc318262282[mm9:7:111289137-111289157:-]0.64651350-14.53-0.1444
MIMAT0000215mmu-miR-186244178Ubqln3ucgGGUUU--UCCU-CU-UAAGAAAc ||||| | | || :|||||| aaaCCAAAUUACUAUGAUGUUCUUUa22095120[mm9:7:111289299-111289324:-]0.63341326-9.94-0.1607
MIMAT0000215mmu-miR-186244178Ubqln3ucggguuuuccucuUAAGAAac |||||| acccuaguucuccuAUUCUUga395879[mm9:7:111289340-111289361:-]0.63341200-10.76-0.1409
MIMAT0000379mmu-miR-301a244178Ubqln3cgaAACUGUUAUGAUAACGUGAc ||| ||||| : |||||| uucUUG--AAUACAGCUGCACUa2217393[mm9:7:111289326-111289346:-]0.63341336-11.86-0.2756
MIMAT0000387mmu-miR-130b244178Ubqln3uacGGGAAAGUA-GU-AACGUGAc ::||| || || |||||| cuaUUCUUGAAUACAGCUGCACUa2207093[mm9:7:111289326-111289349:-]0.63341216-13.19-0.2780
MIMAT0000534mmu-miR-26b244178Ubqln3uggAUAGGACUUAAUGA-ACUu || | ||||||| ||| cuaUAAACCAAAUUACUAUGAu21991112[mm9:7:111289307-111289328:-]0.63341220-9.50-1.1265
MIMAT0000541mmu-miR-96244178Ubqln3ucguuuUUACACGAUCACGGUuu |:| | :|||||||| acauccAGUCU-UUAGUGCCAcc318261282[mm9:7:111289137-111289158:-]0.64651350-13.34-0.1473
MIMAT0000555mmu-miR-324-5p244178Ubqln3ugugguuacgggauCCCCUACGc |||||||| gccagaaauaggguGGGGAUGCu210162184[mm9:7:111289235-111289257:-]0.63341457-19.29-0.7896
MIMAT0001092mmu-miR-376b244178Ubqln3uucaccuacaaggaGAUACUa |||||| uauaaaccaaauuaCUAUGAu2892112[mm9:7:111289307-111289327:-]0.63341206-9.58-0.1381
MIMAT0004186mmu-miR-301b244178Ubqln3cgaAACUGUUAUGGUAACGUGAc ||| ||||| : |||||| uucUUG--AAUACAGCUGCACUa2217393[mm9:7:111289326-111289346:-]0.63341336-12.98-0.2756
MIMAT0003475mmu-miR-146b244178Ubqln3ucGGAUACCUUAAGUCAAGAGu |:||| | :||||||| guCUUAU-UACCCUAGUUCUCc2215070[mm9:7:111289349-111289369:-]0.63341467-12.82-1.0305
MIMAT0003515mmu-miR-721244178Ubqln3aagggggaaaauuaACGUGAc |||||| uucuugaauacagcUGCACUa287393[mm9:7:111289326-111289346:-]0.63341206-9.19-0.2878
MIMAT0004895mmu-miR-590-5p244178Ubqln3gacguGA-AAAUACUUAU-UCGAg || || |||||| |||| uucucCUAUUCUUGAAUACAGCUg2186588[mm9:7:111289331-111289354:-]0.63341240-9.39-1.1509
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G098649Ubqln3Mus musculus244178
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
Ubqln3mmu-miR-146abeg:55end:70pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& |||| .||||||| &5' -ACCC--------TAGTTCTC- 3'
Ubqln3mmu-miR-582-5pbeg:181end:201pic:3' TCATTGAC-CAACTTGTTGACAT 5'& .||| || |||||||. &5' ----GCTGTGTAATCCAACTGTG 3'
Ubqln3mmu-miR-509-5pbeg:125end:144pic:3' TACTAACGGTGTAAGACCTCAT 5'& || |..||||||||| &5' --GAGACA-ATGTTCTGGAGT- 3'
Ubqln3mmu-miR-1953beg:31end:46pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& .||| ||||||| &5' ------TCTGC---CTTTCCC- 3'
Ubqln3mmu-miR-141starbeg:140end:158pic:3' AGGTTGTGACGTGACCTTCTAC 5'& .|||.| |||||||| &5' -TCAATAA------GGAAGATG 3'
Ubqln3mmu-miR-324-5pbeg:173end:184pic:3' TGTGGTTACGGGATCCCCTACGC 5'& |||||||| &5' --------------GGGGATGC- 3'
Ubqln3mmu-miR-296-5pbeg:216end:227pic:3' TGTCCTAACTCCCCCCCGGGA 5'& |||||||| &5' -------------GGGGCCCT 3'
Ubqln3mcmv-miR-m01-1beg:14end:35pic:3' GGCAAGCTGCAAT--AAGAGGAGA 5'& ||| ||.||||.| &5' ------GACCATATCTTTTCCTTT 3'
Ubqln3mcmv-miR-m108-2-3pbeg:127end:146pic:3' TGGCCAGTGAGCAGAGCTCAGTG 5'& || ||| |||||| &5' ------CAATGTTCTGGAGTCA- 3'
Ubqln3mmu-let-7cbeg:14end:42pic:3' TTGGTATGTT---GGAT-GATGGAGT 5'& .||||||. ||| ||.|||. &5' GACCATATCTTTTCCTTTCTGCCTT- 3'
Ubqln3mmu-let-7gbeg:234end:250pic:3' TTGACATGTTTGATGATGGAGT 5'& |||||| |||.||. &5' --CTGTAC------CTATCTT- 3'
Ubqln3mmu-miR-122beg:192end:212pic:3' GTTTGTGGTAAC-AGTGTGAGGT 5'& ||..| | ||||||. &5' -----ACTGTGCCTGACACTCT- 3'
Ubqln3mmu-miR-128beg:107end:127pic:3' TTTCTCTGGCC-AAGTGACACT 5'& ||. ||.||||||. &5' -----GATGTTCTTTACTGTGG 3'
Ubqln3mmu-miR-146bbeg:49end:70pic:3' TCGGATACCTTAAGTCAAGAGT 5'& |.|| .||||||| &5' -GTCTTATTACCCTAGTTCTC- 3'
Ubqln3mmu-miR-146bstarbeg:201end:224pic:3' TGGTCT-TGACTCAG-GGATCCCG 5'& || ||| |||.|||| &5' ----GACACTCTTTTACCTGGGGC 3'
Ubqln3mmu-miR-149beg:148end:168pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& |||||. | ||||||| &5' ------GAAGATGAGAAGCCAGA 3'
Ubqln3mmu-miR-151-5pbeg:58end:80pic:3' TGATCTGACACTCGAGGAGCT 5'& |||| |.||.|| &5' -CTAGTTCTCCTA-TTCTTGA 3'
Ubqln3mmu-miR-1933-5pbeg:94end:113pic:3' TTTGATTCTGGCTT-GTGGTACTGA 5'& ||| || .||.||||. &5' --------ACCAAATTACTATGAT- 3'
Ubqln3mmu-miR-1961beg:23end:42pic:3' AAGATTGAT-GATGGAGT 5'& |.| || ||.|||. &5' -TTTTCCTTTCTGCCTT- 3'
Ubqln3mmu-miR-1968beg:67end:91pic:3' TCAGGTGGTAGGAAT---TGTCGACGT 5'& .| |.||.|||. ||||||||| &5' ---TC-CTATTCTTGAATACAGCTGCA 3'
Ubqln3mmu-miR-1971beg:259end:275pic:3' AGAGTCGGGTCGGAAATG 5'& || .||||.||||| &5' ---CA-TCCAGTCTTTA- 3'
Ubqln3mmu-miR-1981beg:261end:275pic:3' CGGTGCAGATTCGGGTCGGAAATG 5'& .||||.||||| &5' ------------TCCAGTCTTTA- 3'
Ubqln3mmu-miR-1982.1beg:162end:178pic:3' GACACCCTCTTGTATCCCACTCT 5'& |||| ||||||||.| &5' -------AGAA-ATAGGGTGGG- 3'
Ubqln3mmu-miR-2140beg:78end:93pic:3' TGGTGGTTCTAGACGTGGA 5'& .|| ||||||. &5' --TACAG----CTGCACT- 3'
Ubqln3mmu-miR-2140beg:229end:245pic:3' TGGTGGTTCTAGACGTGGA 5'& .|| ||||.|||| &5' ------GAGTTCTGTACCT 3'
Ubqln3mmu-miR-27bbeg:107end:128pic:3' CGTCTTGAATCGGTGACACTT 5'& || || ..||||||.| &5' ---GATGTTCTTTACTGTGGA 3'
Ubqln3mmu-miR-29bstarbeg:156end:167pic:3' ATTTGGTGGTATACTTTGGTCG 5'& |||.|||| &5' -------------GAAGCCAG- 3'
Ubqln3mmu-miR-327beg:26end:44pic:3' TAGGAGT-ACGGGGAGTTCA 5'& ||||. ||||..|| &5' -TCCTTTCTGCCTTTC---- 3'
Ubqln3mmu-miR-331-5pbeg:228end:246pic:3' CCTAGGGAC-CCTGGTATGGATC 5'& || | |..|||||| &5' -------TGAGTTCTGTACCTA- 3'
Ubqln3mmu-miR-423-5pbeg:24end:44pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& |.|| ||.||||||..|| &5' ----TTTC-CTTTCTGCCTTTC- 3'
Ubqln3mmu-miR-709beg:28end:48pic:3' AGGAGGACGGAGACGGAGG 5'& |.|.||||||.| || || &5' -CTTTCTGCCTTTCCC-CC 3'
Ubqln3mmu-miR-1982.2beg:159end:178pic:3' GACACCCTCTTGTATCCCACT 5'& | |||| ||||||||. &5' ----GCCAGAA-ATAGGGTGG 3'
Ubqln3mmu-miR-325beg:136end:151pic:3' AACTATCCTCCACGAGTTATTT 5'& |||| |||||||. &5' ------GGAG----TCAATAAG 3'
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Ubqln3RAID00060407mmu-miR-130a-3pmiRNAMIMAT0000141Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID00074022mmu-miR-590-5pmiRNAMIMAT0004895Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID00075776mmu-miR-344b-5pmiRNAMIMAT0014925Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID00304992mmu-miR-721miRNAMIMAT0003515Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID00643472mmu-miR-344-5pmiRNAMIMAT0017038Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID00683457mmu-miR-344d-3-5pmiRNAMIMAT0014807Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID01023628mmu-miR-301b-3pmiRNAMIMAT0004186Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID01100076mmu-miR-7119-5pmiRNAMIMAT0028135Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID01283098mmu-miR-7023-5pmiRNAMIMAT0027950Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID01456816mmu-miR-7064-3pmiRNAMIMAT0028033Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID01653059mmu-miR-7073-5pmiRNAMIMAT0028052Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID01759805mmu-miR-1968-5pmiRNAMIMAT0009441Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID01853037mmu-miR-183-5pmiRNAMIMAT0000212Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID01911877mmu-miR-3077-3pmiRNAMIMAT0014863Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID01996647mmu-miR-344d-1-5pmiRNAMIMAT0014819Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID01999211mmu-miR-146a-5pmiRNAMIMAT0000158Ubqln3mRNA244178Prediction0.2202
Ubqln3RAID02036969mmu-miR-137-3pmiRNAMIMAT0000149Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID02106895mmu-miR-146b-5pmiRNAMIMAT0003475Ubqln3mRNA244178Prediction0.2202
Ubqln3RAID02534300mmu-miR-344c-5pmiRNAMIMAT0014927Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID02719098mmu-miR-6715-5pmiRNAMIMAT0029876Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID02799567mmu-miR-96-5pmiRNAMIMAT0000541Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID02862508mmu-miR-9-5pmiRNAMIMAT0000142Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID02942213mmu-miR-186-5pmiRNAMIMAT0000215Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03063213mmu-miR-296-5pmiRNAMIMAT0000374Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03120286mmu-miR-130b-3pmiRNAMIMAT0000387Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03166051mmu-miR-324-5pmiRNAMIMAT0000555Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03311304mmu-miR-7661-3pmiRNAMIMAT0029829Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03347000mmu-miR-6941-5pmiRNAMIMAT0027782Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03435697mmu-miR-9769-5pmiRNAMIMAT0036461Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03531215mmu-miR-301a-3pmiRNAMIMAT0000379Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03762618mmu-miR-376b-3pmiRNAMIMAT0001092Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03773097mmu-miR-7024-5pmiRNAMIMAT0027952Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03801825mmu-miR-344g-5pmiRNAMIMAT0014929Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03875149mmu-miR-3544-5pmiRNAMIMAT0022353Ubqln3mRNA244178Prediction0.1828
Ubqln3RAID03896762mmu-miR-26b-5pmiRNAMIMAT0000534Ubqln3mRNA244178Prediction0.1828