DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000376 mmu-miR-298 240667 Sec31b cccuucUUGUCGGGAGGAGACGg || || || ||||||| ucuaccAAGAGGCCGCCUCUGCu 2 18 14 36 [mm9:19:44591763-44591785:-] 0.5762 161 7 -22.27 -0.4850 MIMAT0004582 mmu-miR-106b* 240667 Sec31b cgUCGUUCAUGGGUGUCACGcc || :|||| ||||||| cgAGAGAGUA--AACAGUGCua 3 21 323 342 [mm9:19:44591457-44591476:-] 0.5703 137 0 -16.03 -0.3168 MIMAT0004628 mmu-miR-21* 240667 Sec31b cugUCGGGUAGCUGACGACAAc || ||: | |||||||| aagAGGCCG-CCUCUGCUGUUa 2 20 20 40 [mm9:19:44591759-44591779:-] 0.5762 153 7 -19.01 -0.3225 MIMAT0000742 mmu-miR-378* 240667 Sec31b uguguccuggaccuCAGUCCUc ||||||| --------------GUCAGGAc 2 9 1 8 [mm9:19:44591791-44591798:-] 0.6516 140 7 -11.04 -0.4668 MIMAT0001093 mmu-miR-411* 240667 Sec31b ccaAUCACCUGGCACAA-UGUAu |:| | |:: |||| |||| accUGGGGCAUUCUGUUCACAUg 2 20 295 317 [mm9:19:44591482-44591504:-] 0.5703 123 0 -12.74 -0.1328 MIMAT0002110 mmu-miR-469 240667 Sec31b ccugugguucuaguuacuUUCUCCGu ||||||| ucaggacucucuucuaccAAGAGGCc 2 9 2 27 [mm9:19:44591772-44591797:-] 0.6516 140 7 -16.92 -0.2977 MIMAT0003186 mmu-miR-369-3p 240667 Sec31b uuUCU-AGUUGGUAC-AUAAUAa ||| | ||| :|| |||||| agAGAGUAAACAGUGCUAUUAUu 2 20 325 347 [mm9:19:44591452-44591474:-] 0.5703 130 6 -11.91 -0.4731 MIMAT0003731 mmu-miR-671-5p 240667 Sec31b gagGUCGGG-GAG-GUCCCGAAGGa || :|: :|| || ||||||| gggCAUUCUGUUCACAUGGCUUCCg 2 21 300 324 [mm9:19:44591475-44591499:-] 0.5703 154 7 -21.37 -0.5956 MIMAT0003896 mmu-miR-763 240667 Sec31b cgguGACCAAGAAG-GGUCGACc :||| | | ||||||| gggcUUGGCCCCACGCCAGCUGa 2 19 138 160 [mm9:19:44591639-44591661:-] 0.5762 145 7 -18.99 -0.1448 MIMAT0003452 mmu-miR-678 240667 Sec31b ggaGGUCAGGAACGUGG-CUCUg |::|| ||| |||| |||| accCUGGUGCUUCCACCUGAGAg 2 20 203 225 [mm9:19:44591574-44591596:-] 0.5732 135 0 -25.67 -0.1162 MIMAT0003481 mmu-miR-695 240667 Sec31b aagUCA-GUGGAUA-CGGGUUAGa ||| ::: | | ||||||| cagAGUGUGUAUUUCCCCCAAUCu 2 20 84 107 [mm9:19:44591692-44591715:-] 0.5762 141 7 -15.16 -0.4712 MIMAT0003504 mmu-miR-713 240667 Sec31b cgacacacggaaGUCACGu |||||| cgagagaguaaaCAGUGCu 2 8 323 341 [mm9:19:44591458-44591476:-] 0.5703 120 6 -9.71 -0.2092 MIMAT0004845 mmu-miR-881* 240667 Sec31b ucuacACUGACAAU-AGAGAGAc ||| ||| ||||||| agaguUGAACCUUACUCUCUCUa 2 18 235 257 [mm9:19:44591542-44591564:-] 0.5703 152 7 -13.28 -0.8803 MIMAT0004882 mmu-miR-466f-3p 240667 Sec31b cacacauacaCACACACAUAc | |||||||| uuuuccaacaGAGUGUGUAUu 2 12 76 96 [mm9:19:44591703-44591723:-] 0.5762 147 7 -10.13 -0.5932 MIMAT0005292 mmu-miR-582-3p 240667 Sec31b aacccAAGUCAACAAGUUGUCc ||: || | |||||| guuuuUUUUUUUUUCCAACAGa 2 18 66 87 [mm9:19:44591712-44591733:-] 0.5762 125 6 -6.67 -0.1145 MIMAT0005834 mmu-miR-466i 240667 Sec31b aucacacauacaCACACACAUa | ||||||| uuuuuuccaacaGAGUGUGUAu 2 11 74 95 [mm9:19:44591704-44591725:-] 0.5762 142 7 -12.18 -0.9960 MIMAT0007878 mmu-miR-1894-3p 240667 Sec31b gaGGGAAGUGGGAG-AGGGAACg :|| || :||| ||||||| uuUCCCCCAAUCUCUUCCCUUGc 2 21 95 117 [mm9:19:44591682-44591704:-] 0.5762 159 7 -29.37 -0.4476 MIMAT0009391 mmu-miR-1928 240667 Sec31b cucgaccGUUACAUCGa :|||||||| cucucucUAAUGUAGCa 2 11 249 265 [mm9:19:44591534-44591550:-] 0.5703 146 7 -10.93 -0.5532 MIMAT0009412 mmu-miR-1946a 240667 Sec31b uuuucacacACGGUGGUGACGGGCCGa | || ::| |||||||| uccuucucaUUCCUUUA-UGCCCGGCc 2 19 166 191 [mm9:19:44591608-44591633:-] 0.5762 152 7 -21.76 -0.7935 MIMAT0009426 mmu-miR-1955 240667 Sec31b uuuucgACGUCACGUAGGACCCUGa ||| || |||||||| ccuuuaUGCCCGGCCACCUGGGACu 2 20 177 201 [mm9:19:44591598-44591622:-] 0.5762 155 7 -24.65 -0.2071 MIMAT0009443 mmu-miR-1946b 240667 Sec31b uuuucguacACGGUGGUGACGGGCCg | || ::| ||||||| uccuucucaUUCCUUUA-UGCCCGGc 2 18 166 190 [mm9:19:44591609-44591633:-] 0.5762 147 7 -22.84 -0.5197 MIMAT0009444 mmu-miR-1970 240667 Sec31b guuucggauagggguCACUGUGu ||||||| cuugcugccagguauGUGACACu 2 9 113 135 [mm9:19:44591664-44591686:-] 0.5762 140 7 -15.84 -0.2564 MIMAT0015641 mmu-miR-3470b 240667 Sec31b ggucggaccaGAUGUCUCACu | |||||||| uuuuuuuuucCAACAGAGUGu 2 12 71 91 [mm9:19:44591708-44591728:-] 0.5762 147 7 -15.33 -1.0550 MIMAT0000127 mmu-miR-29b 240667 Sec31b uugugaCUAAAGUUUACCACGAu || || ||||||| accuggGACUUACCCUGGUGCUu 2 18 192 214 [mm9:19:44591585-44591607:-] 0.5732 145 7 -16.30 -0.1195 MIMAT0004528 mmu-miR-125a-3p 240667 Sec31b ccgaGGGUUCUUGGA-GUGGACa ||| :| :|:| |||||| cuuaCCCUGGUGCUUCCACCUGa 2 19 200 222 [mm9:19:44591577-44591599:-] 0.5732 126 6 -20.76 -0.2992 MIMAT0000224 mmu-miR-194 240667 Sec31b agguguaccucaACGACAAUGu ||||||||| agaggccgccucUGCUGUUACu 2 11 21 42 [mm9:19:44591757-44591778:-] 0.5762 150 7 -17.95 -0.2746 MIMAT0000224 mmu-miR-194 240667 Sec31b aggUGUACCUC-AACGACAA-UGu || |||:| | ||||| || cuaACCUGGGGCAUUCUGUUCACa 2 20 292 315 [mm9:19:44591484-44591507:-] 0.5703 122 0 -15.32 -0.3797 MIMAT0000535 mmu-miR-29a 240667 Sec31b auuggCUAAAGUCUACCACGAu || || ||||||| ccuggGACUUACCCUGGUGCUu 2 18 193 214 [mm9:19:44591585-44591606:-] 0.5732 145 7 -16.19 -0.1195 MIMAT0000536 mmu-miR-29c 240667 Sec31b auuggCUAAAGUUUACCACGAu || || ||||||| ccuggGACUUACCCUGGUGCUu 2 18 193 214 [mm9:19:44591585-44591606:-] 0.5732 145 7 -14.73 -0.1195 MIMAT0000567 mmu-miR-329 240667 Sec31b uuuuuccaaucgaccCACACAa |||||| uuuuuuuccaacagaGUGUGUa 2 8 73 94 [mm9:19:44591705-44591726:-] 0.5762 120 6 -7.27 -0.1015 MIMAT0004642 mmu-miR-330 240667 Sec31b cgGAUUCUGU-GUCCGGGUC-UCu |||| ::| || |||||| || cuCUAAUGUAGCA-GCCCAGCAGg 2 21 253 275 [mm9:19:44591524-44591546:-] 0.5703 125 0 -20.31 -0.2365 MIMAT0000669 mmu-miR-221 240667 Sec31b cuuugggucgucuGUUACAUCGa :|||||||| accuuacucucucUAAUGUAGCa 2 11 243 265 [mm9:19:44591534-44591556:-] 0.5703 146 7 -13.55 -0.5604 MIMAT0000670 mmu-miR-222 240667 Sec31b ugggucaucGGUCUACAUCGa |:| ||||||| uuacucucuCUA-AUGUAGCa 2 13 246 265 [mm9:19:44591534-44591553:-] 0.5703 142 7 -12.22 -0.5256 MIMAT0004684 mmu-miR-362-3p 240667 Sec31b acuuAGGAACUUGUC-CACACAa |::| ||||| |||||| uuuuUUUUCCAACAGAGUGUGUa 2 19 72 94 [mm9:19:44591705-44591727:-] 0.5762 130 6 -15.86 -1.0671 MIMAT0000711 mmu-miR-365 240667 Sec31b uauUCCUAAAAAU----CCCCGUAAu || :| | || |||||||| gccAGAGUGUCUAACCUGGGGCAUUc 2 20 282 307 [mm9:19:44591492-44591517:-] 0.5703 146 7 -14.24 -0.1346 MIMAT0001095 mmu-miR-370 240667 Sec31b uggUCCAAGGUGGGGUCGUCCg | || || ||||||||| cuaAUGUAGCAGCCCAGCAGGg 2 20 255 276 [mm9:19:44591523-44591544:-] 0.5703 163 7 -24.02 -0.1441

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G070919 Sec31b Mus musculus 240667

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Sec31b mmu-miR-3470b beg:80 end:91 pic:3' GGTCGGACCAGATGTCTCACT 5'& |||||||| &5' ------------ACAGAGTG- 3' Sec31b mmu-miR-298 beg:17 end:37 pic:3' CCCTTCTTGTCGGGAGGAGACGG 5'& |||| .||| |||||||. &5' ---AAGA--GGCCG-CCTCTGCT 3' Sec31b mmu-miR-365 beg:296 end:307 pic:3' TATTCCTAAAAATCCCCGTAAT 5'& |||||||| &5' -------------GGGGCATT- 3' Sec31b mmu-miR-378star beg:0 end:8 pic:3' TGTGTCCTGGACCTCAGTCCTC 5'& ||||||| &5' --------------GTCAGGA- 3' Sec31b mcmv-miR-m01-1 beg:155 end:171 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& .|| || ||||||. &5' -----TGA-GTG--TCTCCTT- 3' Sec31b mghv-miR-M1-8 beg:142 end:165 pic:3' CTGGTTTGGGGGTC-ACTCACGA 5'& |.|| | |||| ||||||. &5' GGCCCCA-CGCCAGCTGAGTGT- 3' Sec31b mmu-miR-1199 beg:223 end:238 pic:3' GGCGCGCTGGCCCTGAGTCT 5'& |.||. .|||||| &5' ----GTGAT----GCTCAGA 3' Sec31b mmu-miR-1224 beg:161 end:181 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& ||. |||.|.|| ||||. &5' -TCT-CCTTCTCATTCCTT-- 3' Sec31b mmu-miR-138 beg:136 end:159 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& |||.||. | | ||.|||||| &5' -GGCTTGGCCC-C-ACGCCAGCT 3' Sec31b mmu-miR-139-3p beg:150 end:169 pic:3' GAGGTTGTCCCGGCGCAGAGGT 5'& |||.| |.|||||| &5' --CCAGCTGA---GTGTCTCC- 3' Sec31b mmu-miR-143 beg:325 end:348 pic:3' CTCGA-TGTCACGA-AGTAGAGT 5'& |||. |||||||| |.||. &5' GAGTAAACAGTGCTATTATT--- 3' Sec31b mmu-miR-146bstar beg:280 end:304 pic:3' TGGTCTTGACTCAG-GGATCCCG 5'& .|||||. || |||.|||| &5' GCCAGAG-TGTCTAACCTGGGGC 3' Sec31b mmu-miR-183 beg:325 end:344 pic:3' TCACTTAAGATGGTCACGGTAT 5'& ||.| ||||||.|| &5' ---GAGTAAA--CAGTGCTAT- 3' Sec31b mmu-miR-186 beg:55 end:73 pic:3' TCGGGTTTTCCTCT-TAAGAAAC 5'& |||.||.|| .||.||| &5' -----AAAGGGGGACGTTTTTT- 3' Sec31b mmu-miR-1894-3p beg:94 end:118 pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& |||| |.| .|||||||| &5' -TCCCCCAATCTCTTCCCTTGC 3' Sec31b mmu-miR-1907 beg:22 end:40 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& .|| |||||||||.| &5' GCCG------CCTCTGCTGTT- 3' Sec31b mmu-miR-1935 beg:18 end:37 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& |||| ||| ||||||||. &5' AGAG----GCC-GCCTCTGCT- 3' Sec31b mmu-miR-1940 beg:152 end:184 pic:3' TTGACGA--GGTGGAAGAGTCAGGAGGTA 5'& |.||| .| |||||||| ||||..|| &5' AGCTGAGTGTCTCCTTCTCATTCCTTTAT 3' Sec31b mmu-miR-1955 beg:180 end:202 pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& ||| || ||||||||| &5' ------TGCCCGGCCACCTGGGACT 3' Sec31b mmu-miR-1955 beg:284 end:304 pic:3' TTTTCGACGTCACGTA--GGACCCTGA 5'& ||||. ||||||.| &5' ---------AGTGTCTAACCTGGGGC- 3' Sec31b mmu-miR-1970 beg:113 end:135 pic:3' GTTTCGGATAGGGGT---CACTGTGT 5'& ||. || ||||||| &5' ----GCTG--CCAGGTATGTGACAC- 3' Sec31b mmu-miR-199a-5p beg:118 end:139 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& |||||| | || |||||||| &5' ---CAGGTA-TGTG-ACACTGGG 3' Sec31b mmu-miR-199bstar beg:118 end:139 pic:3' CTTGTCCAT-CAGATTTGTGACCC 5'& |||||| || .|||||||| &5' ---CAGGTATGT---GACACTGGG 3' Sec31b mmu-miR-201 beg:149 end:164 pic:3' TTCTTGTTACGGAATGACTCAT 5'& ||| .||||||. &5' ---------GCCA-GCTGAGTG 3' Sec31b mmu-miR-2134 beg:2 end:24 pic:3' CGTGGGGCAAAG-GGTTCTG 5'& | ||.|. || |||||| &5' GGACTCTCTTCTACCAAGA- 3' Sec31b mmu-miR-2146 beg:238 end:258 pic:3' GTGTACCTTGGGA----AGAGGTG 5'& |||||.| ||||.| &5' ------GAACCTTACTCTCTCTA- 3' Sec31b mmu-miR-21star beg:20 end:40 pic:3' CTGTCGGGTAGCTGACGACAAC 5'& || ||. | |||||||| &5' ---AGGCCG-CCTCTGCTGTT- 3' Sec31b mmu-miR-220 beg:119 end:139 pic:3' TTCACAGACTGTGACACCACC 5'& |.|| | |||||||| || || &5' AGGTATGTGACACTG-GG-GG 3' Sec31b mmu-miR-23a beg:117 end:132 pic:3' CCTTTAGGGACCGTTACACTA 5'& || ||. |||||| &5' -------CCAGGT-ATGTGA- 3' Sec31b mmu-miR-29b beg:204 end:214 pic:3' TTGTGACTAAAGTTTACCACGAT 5'& ||||||| &5' ---------------TGGTGCT- 3' Sec31b mmu-miR-29c beg:204 end:214 pic:3' ATTGGCTAAAGTTTACCACGAT 5'& ||||||| &5' --------------TGGTGCT- 3' Sec31b mmu-miR-3099 beg:96 end:122 pic:3' AGGGGTTGGAGA---GAGAT-CGGAT 5'& ||||||.|||| ||. ||| &5' -CCCCAATCTCTTCCCTTGCTGCC-- 3' Sec31b mmu-miR-30c-2star beg:202 end:218 pic:3' TCTCATTTGTCGGAA---GAGGGTC 5'& ||| ||.||| &5' -----------CCTGGTGCTTCCA- 3' Sec31b mmu-miR-326 beg:216 end:239 pic:3' TGAC-CTCCTTCCCGGGTCTCC 5'& ||| |||| ||.||||| &5' -CTGAGAGGTGATGCTCAGAG- 3' Sec31b mmu-miR-330 beg:220 end:239 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& .|| . ||.||||| &5' ----GAGGTGAT-GCTCAGAG- 3' Sec31b mmu-miR-343 beg:45 end:65 pic:3' AGAC-CCGTGTACTTCCCTCT 5'& || |||| | |||||.|| &5' --TGTGGCAGA--AAGGGGGA 3' Sec31b mmu-miR-3472 beg:332 end:346 pic:3' CCAAGGAAGGTCGAAGACCGATAAT 5'& |||. ||||||| &5' ---------CAGT-----GCTATTA 3' Sec31b mmu-miR-3473 beg:235 end:258 pic:3' CCGACTCGGT---AGAGAGGT 5'& |.||| || ||||||.| &5' -GTTGAACCTTACTCTCTCTA 3' Sec31b mmu-miR-370 beg:261 end:276 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& || ||||||||| &5' ---------CAGCCCAGCAGG- 3' Sec31b mmu-miR-465c-3p beg:192 end:211 pic:3' AGATGAATCTTTCC-GGGACTAG 5'& |.|.| |||||.| &5' ------TGGGACTTACCCTGGT- 3' Sec31b mmu-miR-466f-3p beg:85 end:96 pic:3' CACACATACACACACACATAC 5'& |||||||| &5' ------------GTGTGTAT- 3' Sec31b mmu-miR-496 beg:218 end:236 pic:3' CTCTAACCGGTACATTATGAGT 5'& |||| ||.||.|||| &5' GAGAG-------GTGATGCTCA 3' Sec31b mmu-miR-671-5p beg:302 end:324 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& |.| |..| || ||||||| &5' -TTCTGTTCA--CATGGCTTCC- 3' Sec31b mmu-miR-673-3p beg:188 end:210 pic:3' CCAC-GTG--TCTTGAGTCGGGGCCT 5'& | ||| .|.|||.| |||.|| &5' ---GCCACCTGGGACTTA-CCCTGG- 3' Sec31b mmu-miR-706 beg:58 end:74 pic:3' AAAAAACTCTGTCCCAAAGAGA 5'& |.||| ||||.|.| &5' ------GGGAC---GTTTTTTT 3' Sec31b mmu-miR-761 beg:106 end:121 pic:3' ACACAGTCAAAGTGGGACGACG 5'& ||| ||.|||||| &5' ---------TTC-CCTTGCTGC 3' Sec31b mmu-miR-877 beg:0 end:19 pic:3' GGGACGCGGT----AGAGGAGATG 5'& |.|| ||||.||||| &5' ------GTCAGGACTCTCTTCTAC 3' Sec31b mmu-miR-881star beg:235 end:257 pic:3' TCTACACTGACAAT-AGAGAGAC 5'& || ||| ||| ||||||| &5' -GAGTTGAACCTTACTCTCTCT- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sec31b RAID00302588 mmu-miR-873a-5p miRNA MIMAT0004936 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID01209686 mmu-miR-222-3p miRNA MIMAT0000670 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID01674042 mmu-miR-125a-3p miRNA MIMAT0004528 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID01879528 mmu-miR-370-3p miRNA MIMAT0001095 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID02091659 mmu-miR-329-3p miRNA MIMAT0000567 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID02092672 mmu-miR-29c-3p miRNA MIMAT0000536 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID02120143 mmu-miR-92b-3p miRNA MIMAT0004899 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID02209636 mmu-miR-365-3p miRNA MIMAT0000711 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID02285131 mmu-miR-194-5p miRNA MIMAT0000224 Sec31b mRNA 240667 Prediction 0.2202 Sec31b RAID02651284 mmu-miR-221-3p miRNA MIMAT0000669 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID02679761 mmu-miR-1928 miRNA MIMAT0009391 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID02752248 mmu-miR-3084-3p miRNA MIMAT0014877 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID03013147 mmu-miR-221-5p miRNA MIMAT0017060 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID03318442 mmu-miR-1946a miRNA MIMAT0009412 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID03468195 mmu-miR-29a-3p miRNA MIMAT0000535 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID03651034 mmu-miR-1894-3p miRNA MIMAT0007878 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID03750651 mmu-miR-29b-3p miRNA MIMAT0000127 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID03954634 mmu-miR-330-5p miRNA MIMAT0004642 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID03989838 mmu-miR-362-3p miRNA MIMAT0004684 Sec31b mRNA 240667 Prediction 0.1828 Sec31b RAID04049856 mmu-miR-3470b miRNA MIMAT0015641 Sec31b mRNA 240667 Prediction 0.1828