DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Trim65 ATTTA 122-1690 2180-2184;2510-2514;2514-2518;2684-2688 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Trim65 WWATTTAWW 122-1690 2178-2186 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT596896 mmu-miR-345-5p Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603196 mmu-miR-210-3p Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT596895 mmu-miR-382-5p Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603192 mmu-miR-466h-5p Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603186 mmu-miR-574-5p Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603190 mmu-miR-466d-5p Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603189 mmu-miR-466k Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603193 mmu-miR-466j Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603195 mmu-miR-466m-5p Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603191 mmu-miR-466n-5p Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603187 mmu-miR-466l-5p Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603188 mmu-miR-466i-5p Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603194 mmu-miR-669m-5p Mus musculus Trim65 338364 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004531 mmu-miR-135a* 338364 Trim65 gcgguGCCGAGGUU-AGGGAUAu :|| | |: ||||||| cuagcUGGGUGGAGCUCCCUAUa 2 18 75 97 [mm9:11:115985793-115985815:-] 0.5015 144 7 -16.95 -0.2014 MIMAT0004533 mmu-miR-141* 338364 Trim65 agGUUGUG-ACGUGA--CCUUCUAc :||:|: | | || ||||||| aaUAAUAUAUUCCCUAGGGAAGAUa 2 21 1317 1341 [mm9:11:115986039-115986063:-] 0.5014 150 7 -10.90 -0.6714 MIMAT0000161 mmu-miR-151-3p 338364 Trim65 ggAGUUCCUCGGA-GUCAGAUc |||| || ||||||| cuUCAACCUCACUGCAGUCUAg 2 20 110 131 [mm9:11:115985759-115985780:-] 0.5015 146 7 -22.03 -0.1271 MIMAT0004541 mmu-miR-188-3p 338364 Trim65 acguuugggacgUACACCCUc :||||||| cauguuuauuuaGUGUGGGAc 2 10 987 1007 [mm9:11:115986373-115986393:-] 0.5014 141 7 -15.29 -0.3139 MIMAT0004620 mmu-let-7a* 338364 Trim65 ccUUUCUG-UC--AUCU---AACAUAUc | |||| || |||: ||||||| acACAGACUAGCAUAGGCUUUUGUAUAu 2 21 464 491 [mm9:11:115986889-115986916:-] 0.5011 149 7 -11.06 -0.5822 MIMAT0004621 mmu-let-7b* 338364 Trim65 cccuucCGUCAUCC---AACAUAUc ||| |||| ||||||| agacuaGCA-UAGGCUUUUGUAUAu 2 17 468 491 [mm9:11:115986889-115986912:-] 0.5011 149 7 -11.46 -0.5895 MIMAT0005439 mmu-let-7c-2* 338364 Trim65 ccUUUCUG-UC--AUCU---AACAUAUc | |||| || |||: ||||||| acACAGACUAGCAUAGGCUUUUGUAUAu 2 21 464 491 [mm9:11:115986889-115986916:-] 0.5011 149 7 -11.06 -0.5822 MIMAT0004623 mmu-let-7f* 338364 Trim65 cccuucCGUUAUCU---AACAUAUc || ||||: ||||||| agacuaGC-AUAGGCUUUUGUAUAu 2 17 468 491 [mm9:11:115986889-115986912:-] 0.5011 145 7 -9.76 -0.5932 MIMAT0000549 mmu-miR-322* 338364 Trim65 cacaacgucgcGAAGUACAAa :|||||||| auuagaaauucUUUCAUGUUu 2 11 973 993 [mm9:11:115986387-115986407:-] 0.5014 146 7 -10.70 -0.9144 MIMAT0000551 mmu-miR-323-3p 338364 Trim65 ucUCCAGCUG-GCACAUUACAc | | | || : |||||||| ggAAGCCCACUUUUGUAAUGUc 2 20 886 907 [mm9:11:115986473-115986494:-] 0.5014 150 7 -9.48 -0.6277 MIMAT0000586 mmu-miR-340-3p 338364 Trim65 cgauauuucAUUGA--CUCUGCCu |:||| ||||||| ccucucuguUGACUCAGAGACGGa 2 14 81 104 [mm9:11:115987276-115987299:-] 0.5465 148 7 -20.32 -0.5582 MIMAT0000650 mmu-miR-17* 338364 Trim65 gauguucacgGGAGUGACGUCa ||||||||||| uuggcuucaaCCUCACUGCAGu 2 13 106 127 [mm9:11:115985763-115985784:-] 0.5015 160 7 -25.41 -0.2763 MIMAT0004664 mmu-miR-214* 338364 Trim65 cgUGUCGUUC-ACAUCUGUCCGu |::| ::| | |||||||| ucAUGGAGGGAAGCAGACAGGCg 2 21 339 361 [mm9:11:115987019-115987041:-] 0.5011 151 7 -21.80 -0.3203 MIMAT0004664 mmu-miR-214* 338364 Trim65 cguGUCGU-UCACAUCU-GUCCGu ||| | |||||| ||||| gcuCAGAACUAUGUAGACCAGGCu 2 20 1227 1250 [mm9:11:115986130-115986153:-] 0.5014 126 0 -21.70 -0.1484 MIMAT0005444 mmu-miR-218-2* 338364 Trim65 gcGCCACGA-AC-UGUCU-UGGUAc :| |||| || | ||| ||||| ucUGUUGCUGUGAAGAGACACCAUg 2 21 248 272 [mm9:11:115987108-115987132:-] 0.5011 126 0 -19.41 -0.4021 MIMAT0004670 mmu-miR-7a* 338364 Trim65 auaccgucugacacUAAACAAc ||||||| guaauuccuuaagcAUUUGUUu 2 9 919 940 [mm9:11:115986440-115986461:-] 0.5014 140 7 -3.55 -0.4010 MIMAT0000742 mmu-miR-378* 338364 Trim65 ugugucCUGGACCUCAGUCCUc || | | |||||||| gugcuaGAGCAGUAGUCAGGAg 2 17 364 385 [mm9:11:115986995-115987016:-] 0.5011 156 7 -20.01 -0.1407 MIMAT0004691 mmu-miR-382* 338364 Trim65 uuuUUCACAACAGGCACUUACu || | || | : |||||| uauAAAUAUUUUAUAUGAAUG- 2 20 1340 1360 [mm9:11:115986020-115986040:-] 0.5014 127 6 -4.74 -0.2276 MIMAT0003170 mmu-miR-541 338364 Trim65 ucacaCUGGU-UGUAGUCUUAGGGAa |:||| || || ||||||| aacaaGGCCACACCUCCUAAUCCCUc 2 21 512 537 [mm9:11:115986843-115986868:-] 0.5011 163 7 -20.71 -0.2816 MIMAT0004788 mmu-miR-20b* 338364 Trim65 gaucuucacgaGUGUGACGUCa | |||||||| uuggcuucaacCUCACUGCAGu 2 12 106 127 [mm9:11:115985763-115985784:-] 0.5015 147 7 -18.28 -0.2763 MIMAT0003733 mmu-miR-665 338364 Trim65 ucccUGGAGUCGGAGGACCa :|||| |||||||| uccuGCCUCUUCCUCCUGGa 2 17 141 160 [mm9:11:115985730-115985749:-] 0.4954 160 7 -26.10 -0.3313 MIMAT0004822 mmu-miR-770-5p 338364 Trim65 gcaccggGUCUGU--GCACCACGa |||||| |||||||| agggaagCAGACAGGCGUGGUGCu 2 16 345 368 [mm9:11:115987012-115987035:-] 0.5011 162 7 -29.80 -0.1099 MIMAT0003892 mmu-miR-762 338364 Trim65 cgagacagggcCGGGGUCGGGg |:|||||||| uuaaauaggaaGUCCCAGCCCc 2 12 175 196 [mm9:11:115987184-115987205:-] 0.5394 151 7 -26.20 -0.3794 MIMAT0003735 mmu-miR-672 338364 Trim65 agUGUGUGUCAUGUGGUUGGAGu :| :|: :| :||||||| aaGCUUAUUUGGCUUCAACCUCa 2 22 98 120 [mm9:11:115985770-115985792:-] 0.5015 145 7 -17.05 -1.0194 MIMAT0003477 mmu-miR-669a 338364 Trim65 ugUACUUGUACGUGUGUGU-UGa :|| :|| ||||||||| || gaGUGCGCACGCACACACACACa 2 21 418 440 [mm9:11:115986940-115986962:-] 0.5011 140 0 -19.42 -0.2315 MIMAT0003477 mmu-miR-669a 338364 Trim65 uguacuUGUACGUGUGUGU-UGa ||| |||||||| || acacacACACACACACACACACa 2 17 434 456 [mm9:11:115986924-115986946:-] 0.5011 128 0 -14.90 -0.4580 MIMAT0003739 mmu-miR-673-5p 338364 Trim65 gaGGUUCCUGGUC-UCGACACUc :|| | :| | ||||||| agUCACUGUUCUGUUGCUGUGAa 2 21 239 261 [mm9:11:115987119-115987141:-] 0.5011 143 7 -14.26 -0.6129 MIMAT0003451 mmu-miR-677 338364 Trim65 agUCUU-CGAUUAG-UAGUGACUu |||: ||:||| ||||||| ucAGAGUUCUGAUCUCUCACUGAc 2 21 776 799 [mm9:11:115986581-115986604:-] 0.5014 158 7 -22.78 -0.2795 MIMAT0004826 mmu-miR-146b* 338364 Trim65 uggUCUUGACUCAGGGAUCCCg | ||: | ||||||||| gcaAUAAUAUAUUCCCUAGGGa 2 20 1315 1336 [mm9:11:115986044-115986065:-] 0.5014 159 7 -19.14 -0.9152 MIMAT0003479 mmu-miR-669c 338364 Trim65 ugUGUGU-AG-GUGUGUGU-UGAUa ||||| || |:|||||| |||| acACACACUCACGCACACAGACUAg 2 21 450 474 [mm9:11:115986906-115986930:-] 0.5011 142 0 -27.44 -0.3770 MIMAT0003497 mmu-miR-707 338364 Trim65 gcauccgUUCGCCGUACUGAc |: | ||||||| ugugaagAGACACCAUGACUa 2 15 256 276 [mm9:11:115987104-115987124:-] 0.5011 142 7 -13.12 -0.3196 MIMAT0003499 mmu-miR-709 338364 Trim65 aggaGGACGGAGACGGAGg ||| |: ||||||| gcagCCUCCUCCUGCCUCu 2 16 132 150 [mm9:11:115985740-115985758:-] 0.4984 155 7 -27.37 -0.2263 MIMAT0003782 mmu-miR-676 338364 Trim65 ucGAGUUGUUGGAGUC-CUGCc ||| :: : ||||| |||| cuCUCUGUUGACUCAGAGACGg 2 20 82 103 [mm9:11:115987277-115987298:-] 0.5465 123 0 -23.46 -0.2383 MIMAT0004236 mmu-miR-741 338364 Trim65 agaUGUA--UCUUACCG-UAGAGAGu |||| |||:| : ||||||| cuaACAUUCAGAGUUCUGAUCUCUCa 2 21 769 794 [mm9:11:115986586-115986611:-] 0.5014 154 7 -17.92 -0.3888 MIMAT0004839 mmu-miR-743b-5p 338364 Trim65 acuaccUGUGGUCAGACUUGu |:| | ||||||| caacucAUAAAAAUCUGAACc 2 16 1254 1274 [mm9:11:115986106-115986126:-] 0.5014 147 7 -9.68 -0.4109 MIMAT0004849 mmu-miR-883a-3p 338364 Trim65 uaUGACUCUCGACAACGUCAAu |:||:|| : | ||||||| acAUUGGGA-UAGCUGCAGUUa 2 21 1139 1159 [mm9:11:115986221-115986241:-] 0.5014 158 7 -17.95 -0.1343 MIMAT0004851 mmu-miR-883b-3p 338364 Trim65 uaUGACUCUCUACAACGUCAAu |:||:|| | | ||||||| acAUUGGGAUA-GCUGCAGUUa 2 21 1139 1159 [mm9:11:115986221-115986241:-] 0.5014 162 7 -17.52 -0.1330 MIMAT0004863 mmu-miR-220 338364 Trim65 uuCA-CAGACUGUGACACCACc || | | | || ||||||| cuGUAGACAGCCAAUGUGGUGa 2 20 575 596 [mm9:11:115986784-115986805:-] 0.5011 154 7 -16.29 -0.4389 MIMAT0004863 mmu-miR-220 338364 Trim65 uuCACAGACUGUGACACCACc ||| | | : ||||||| ggGUG-CAGCAGAUGUGGUGu 2 20 604 623 [mm9:11:115986757-115986776:-] 0.5011 145 7 -15.67 -0.1427 MIMAT0004890 mmu-miR-509-5p 338364 Trim65 uacuaacggugUAAGACCUCAu :||||||||| cuaccauguggGUUCUGGAGUg 2 12 1087 1108 [mm9:11:115986272-115986293:-] 0.5014 151 7 -21.13 -0.1922 MIMAT0004890 mmu-miR-509-5p 338364 Trim65 uacuAACG-GUGU-AAGACC-UCAu |||| |||| |||||| ||| uuuuUUGCUCACAUUUCUGGAAGUa 2 19 686 710 [mm9:11:115986670-115986694:-] 0.5038 136 0 -22.11 -0.8883 MIMAT0004893 mmu-miR-574-5p 338364 Trim65 ugUGUGAGUGUGUGUGUGUGAGu |||| ||||||||||||||| acACACACACACACACACACUCa 2 22 438 460 [mm9:11:115986920-115986942:-] 0.5011 197 7 -41.33 -0.6231 MIMAT0004893 mmu-miR-574-5p 338364 Trim65 ugUGUGAGUGUGUGUGUGUGAGu |:|:|:| | |||||||| guAUAUUUAAAGUGACACACUCc 2 22 486 508 [mm9:11:115986872-115986894:-] 0.5011 161 7 -18.49 -0.2466 MIMAT0004930 mmu-miR-466d-5p 338364 Trim65 guACAUGUACAUGCGUGUGUGu || :|| | || ||||||| agUGCGCACGCACACACACACa 2 21 419 440 [mm9:11:115986940-115986961:-] 0.5011 164 7 -25.91 -0.3391 MIMAT0004930 mmu-miR-466d-5p 338364 Trim65 guacaUGUACAUGCGUGUGUGu ||| || ||||||| cacacACACACACACACACACa 2 18 435 456 [mm9:11:115986924-115986945:-] 0.5011 153 7 -16.28 -0.6597 MIMAT0004861 mmu-miR-877 338364 Trim65 gggACGCGGUAGAGG-AGAUg | || : ||||| |||| gagUCCGAUCUCUCCUUCUAc 2 18 1070 1090 [mm9:11:115986290-115986310:-] 0.5014 121 0 -20.19 -0.2119 MIMAT0004862 mmu-miR-877* 338364 Trim65 accCUCCUCCCUCUUCUCCUGu | ||||| ||||||| cguGUGGAGG--UCAGAGGACa 2 20 1042 1061 [mm9:11:115986319-115986338:-] 0.5014 148 7 -23.08 -0.1795 MIMAT0005839 mmu-miR-669f 338364 Trim65 uaugcacacacacAUACAUAUAc | ||||||| acuagcauaggcuUUUGUAUAUu 2 11 470 492 [mm9:11:115986888-115986910:-] 0.5011 142 7 -6.43 -0.6492 MIMAT0005845 mmu-miR-466k 338364 Trim65 agugUACAUGUACAUGUGUGUGu :|| :|| | |||||||| acgaGUGCGCACGCACACACACa 2 20 416 438 [mm9:11:115986942-115986964:-] 0.5011 163 7 -21.61 -0.3174 MIMAT0005845 mmu-miR-466k 338364 Trim65 agUGUACAUGUACAUGUGUGUGu ||| ||| |||||||| acACACACACACACACACACACu 2 22 436 458 [mm9:11:115986922-115986944:-] 0.5011 157 7 -20.75 -0.3448 MIMAT0005853 mmu-miR-669e 338364 Trim65 uacuUGUACGUGUGUGU-UCUGu ||| |||:|||| |||| acacACACUCACGCACACAGACu 2 19 450 472 [mm9:11:115986908-115986930:-] 0.5011 134 0 -18.95 -0.3007 MIMAT0005860 mmu-miR-1199 338364 Trim65 ggcgcgcugGCCCUGAGUCu :||||||||| uauuuagugUGGGACUCAGa 2 12 993 1012 [mm9:11:115986368-115986387:-] 0.5014 151 7 -24.03 -0.2966 MIMAT0005860 mmu-miR-1199 338364 Trim65 ggCGCGCUGGC-CCUGAGUCu || : |:| ||||||| ugGCCUCUCUGUUGACUCAGa 2 19 78 98 [mm9:11:115987282-115987302:-] 0.5465 141 7 -17.50 -0.7336 MIMAT0009393 mmu-miR-1930 338364 Trim65 ugcgacguccAUGAUACCUCCa ||: ||||||| agcccaugauUAUCAUGGAGGg 2 13 327 348 [mm9:11:115987032-115987053:-] 0.5011 148 7 -12.68 -0.3161 MIMAT0009396 mmu-miR-1933-5p 338364 Trim65 uuUGAUUCUGGCUUGUGGUACUGa :||: || :|||||||||| uuGCUGUGAAGAGACACCAUGACu 2 23 252 275 [mm9:11:115987105-115987128:-] 0.5011 166 7 -24.37 -0.4467 MIMAT0009418 mmu-miR-669l 338364 Trim65 ugUAUAUGUACGUGUGUGU-UGa :|: :|| ||||||||| || gaGUGCGCACGCACACACACACa 2 21 418 440 [mm9:11:115986940-115986962:-] 0.5011 136 0 -18.21 -0.2315 MIMAT0009418 mmu-miR-669l 338364 Trim65 ugUAUAUGUACGUGUGUGU-UGa | | ||| |||||||| || acACACACACACACACACACACu 2 21 436 458 [mm9:11:115986922-115986944:-] 0.5011 132 0 -17.10 -0.2330 MIMAT0009421 mmu-miR-669o 338364 Trim65 ugUAUUUGUACGUGUGUGU-UGAu | | ||| |||||||| ||| acACACACACACACACACACACUc 2 22 436 459 [mm9:11:115986921-115986944:-] 0.5011 137 0 -16.61 -0.2084 MIMAT0009423 mmu-miR-1952 338364 Trim65 gucuUCCUCCCACCUCu || |||||||| accuAGCUGGGUGGAGc 2 14 73 89 [mm9:11:115985801-115985817:-] 0.5015 149 7 -18.69 -0.1533 MIMAT0009435 mmu-miR-1962 338364 Trim65 uacacaggGUCA---CGGUCGGAGa |||| | ||||||| ccucacugCAGUCUAGGCAGCCUCc 2 15 116 140 [mm9:11:115985750-115985774:-] 0.4984 145 7 -19.39 -0.1372 MIMAT0009438 mmu-miR-1965 338364 Trim65 acgcgguGAUGCCGGG-CCGAa |||: |||| |||| uccuaauCUAUAGCCCAGGCUg 2 15 206 227 [mm9:11:115985663-115985684:-] 0.4921 122 0 -20.03 -0.1399 MIMAT0009439 mmu-miR-1966 338364 Trim65 cugagagagGACUCG-GUCGAGGGAa |||:|: |||||||| auaaccuagCUGGGUGGAGCUCCCUa 2 17 70 95 [mm9:11:115985795-115985820:-] 0.5015 155 7 -24.62 -0.7614 MIMAT0009444 mmu-miR-1970 338364 Trim65 guuuCGGAUAGGGGUCACUGUGu |: |||:: |||||||| uuuuGUAUAUUUAAAGUGACACa 2 20 482 504 [mm9:11:115986876-115986898:-] 0.5011 159 7 -18.82 -0.9776 MIMAT0009459 mmu-miR-1982* 338364 Trim65 ggAGGGGUCCUGGGAGGGUu |||: | ||||||| ccUCCUGCUUAGCCUCCCAa 2 19 275 294 [mm9:11:115985596-115985615:-] 0.4867 146 7 -25.96 -0.5207 MIMAT0009460 mmu-miR-1982.1 338364 Trim65 gaCACC-CU-CUUGUAUCCCAC-UCu |||| || ||::|| ||||| || auGUGGUGAUGAGUAU-GGGUGCAGc 2 22 588 612 [mm9:11:115986768-115986792:-] 0.5011 129 0 -25.91 -0.1825 MIMAT0009460 mmu-miR-1982.1 338364 Trim65 gacacccucuuGUAUCCCACUCu ::| ||||||| cugacuuuuuuUGUUGGGUGAGg 2 13 170 192 [mm9:11:115985698-115985720:-] 0.4921 144 7 -16.37 -0.3123 MIMAT0009461 mmu-miR-1982.2 338364 Trim65 gaCACC-CUCUUGUAU-CCCACu |||| || :| :|| ||||| auGUGGUGAUGA-GUAUGGGUGc 2 20 588 609 [mm9:11:115986771-115986792:-] 0.5011 120 0 -24.72 -0.1865 MIMAT0011217 mmu-miR-2141 338364 Trim65 uugaaaagacUGUGGAGGa |||||||| caacaaggccACACCUCCu 2 10 511 529 [mm9:11:115986851-115986869:-] 0.5011 145 7 -16.11 -0.4719 MIMAT0012772 mmu-miR-599 338364 Trim65 caaacuAUUUGACUGUGUu |||| ||||||| uauauuUAAAGUGACACAc 2 14 487 505 [mm9:11:115986875-115986893:-] 0.5011 157 7 -11.40 -0.2766 MIMAT0012774 mmu-miR-664 338364 Trim65 auccgaccccucauuUACUUAu |||||| auauaaauauuuuauAUGAAUg 2 8 1339 1360 [mm9:11:115986020-115986041:-] 0.5014 120 6 -5.22 -0.2381 MIMAT0015641 mmu-miR-3470b 338364 Trim65 ggUCGGA-CCAGAUGUCUCACu ||: | || || ||||||| uuAGUGUGGGACU-CAGAGUGg 2 20 996 1016 [mm9:11:115986364-115986384:-] 0.5014 152 7 -24.03 -0.1009 MIMAT0015644 mmu-miR-1186b 338364 Trim65 caccacGUACGGA-AAUUAGGGu || ||| ||||||| caaggcCACACCUCCUAAUCCCu 2 17 514 536 [mm9:11:115986844-115986866:-] 0.5011 147 7 -15.55 -0.1456 MIMAT0015645 mmu-miR-3473 338364 Trim65 ccgaCUCGG--UAGAGAGGu |||:| |||||||| gcagGAGUCCGAUCUCUCCu 2 15 1066 1085 [mm9:11:115986295-115986314:-] 0.5014 153 7 -20.46 -0.1189 MIMAT0000127 mmu-miR-29b 338364 Trim65 uugugacuaaaguuUACCACGAu :||||||| ggaagcagacaggcGUGGUGCUa 2 10 347 369 [mm9:11:115987011-115987033:-] 0.5011 141 7 -15.64 -0.1445 MIMAT0000133 mmu-miR-101a 338364 Trim65 aaGUCAAUAGUGUCA-UGACAu || |||| :||| ||||| gaCAUCUAUCUUAGUCACUGUu 2 20 227 248 [mm9:11:115987132-115987153:-] 0.5168 131 0 -15.11 -0.3071 MIMAT0000133 mmu-miR-101a 338364 Trim65 aagucAAUAGUGUCAUGACau || |: : |||||| uuuuuUUUUUUUUGUACUGgg 3 17 723 743 [mm9:11:115986637-115986657:-] 0.5014 128 0 -6.79 -0.1071 MIMAT0000135 mmu-miR-125a-5p 338364 Trim65 agUGUCCAAUUUCCCA----GAGUCCCu |:|| |||| || ||||||| cuAUAGAAGAAAGCGUUUAACUCAGGGc 2 23 285 312 [mm9:11:115987068-115987095:-] 0.5011 153 7 -20.10 -0.4916 MIMAT0000136 mmu-miR-125b-5p 338364 Trim65 agUGUUCAAUCCCA----GAGUCCCu | ||| || || ||||||| auAGAAGAAAGCGUUUAACUCAGGGc 2 21 287 312 [mm9:11:115987068-115987093:-] 0.5011 147 7 -17.23 -0.4848 MIMAT0000145 mmu-miR-133a 338364 Trim65 gucgaCCAACUUCCCCUGGUUu || ||: ||||||||| gaagaGGGUGGUGGGGACCAAa 2 18 9 30 [mm9:11:115985860-115985881:-] 0.5015 165 7 -29.23 -0.6469 MIMAT0000149 mmu-miR-137 338364 Trim65 gaugcgCAUAAGA-AUUCGUUAUu | ||| | |: |||||| uuuaaaGAAUUAUAUGUGCAAUAa 2 18 1298 1321 [mm9:11:115986059-115986082:-] 0.5014 124 6 -7.82 -0.1128 MIMAT0000164 mmu-miR-154 338364 Trim65 gcuuccguugugccUAUUGGAu ||||||| gacagucuugcucuAUAACCUa 2 9 56 77 [mm9:11:115985813-115985834:-] 0.5015 140 7 -11.03 -0.6855 MIMAT0000210 mmu-miR-181a 338364 Trim65 ugaguggcugucgcaACUUACaa |||||| uauaaauauuuuauaUGAAUG-- 3 9 1340 1360 [mm9:11:115986020-115986040:-] 0.5014 120 0 -6.70 -0.1927 MIMAT0000214 mmu-miR-185 338364 Trim65 agUCCUUGACGGAAAGAGAGGu ||||:: || ||||||| gcAGGAGU--CCGAUCUCUCCu 2 21 1066 1085 [mm9:11:115986295-115986314:-] 0.5014 153 7 -25.49 -0.1166 MIMAT0000215 mmu-miR-186 338364 Trim65 ucgggUUUUCCUC-UUAAGAAAc |||| || |||||||| acaaaAAAAUUAGAAAUUCUUUc 2 18 965 987 [mm9:11:115986393-115986415:-] 0.5014 160 7 -8.82 -0.7611 MIMAT0000238 mmu-miR-205 338364 Trim65 gucUG-AGGCCACCUUACUUCCu || | :| | ||||||| cccACAUAUGCUUCCAUGAAGGu 2 20 654 676 [mm9:11:115986704-115986726:-] 0.5038 142 7 -11.54 -0.1709 MIMAT0000238 mmu-miR-205 338364 Trim65 gucugaggccaccuUACUUCCu ||||||| acuuuuuacuaucuAUGAAGGg 2 9 134 155 [mm9:11:115987225-115987246:-] 0.5303 140 7 -11.40 -0.2768 MIMAT0000246 mmu-miR-122 338364 Trim65 guuuguggUAACAGUGUGAGGu | || |||||||| auauuuaaAGUGACACACUCCc 2 15 488 509 [mm9:11:115986871-115986892:-] 0.5011 154 7 -15.31 -0.1610 MIMAT0000246 mmu-miR-122 338364 Trim65 guuuGUGGUAACAGUGU-GAGGu || || | |||| |||| ccccCAACAAGGCCACACCUCCu 2 19 507 529 [mm9:11:115986851-115986873:-] 0.5011 122 0 -15.57 -0.3839 MIMAT0004577 mmu-miR-299 338364 Trim65 uucgccAAAUG-GCAGGGUGUAu |||:| :||||||||| cuuuccUUUGCUUGUCCCACAUa 2 17 639 661 [mm9:11:115986719-115986741:-] 0.5038 163 7 -22.14 -0.7273 MIMAT0000533 mmu-miR-26a 338364 Trim65 ucggauaggaccuAAUGAACUu |||||||| uggggugauuuauUUACUUGAg 2 10 813 834 [mm9:11:115986546-115986567:-] 0.5014 145 7 -11.63 -0.2621 MIMAT0000534 mmu-miR-26b 338364 Trim65 uggauagGACUUAAUGAACUu :| | |||||||| ggggugaUUUAUUUACUUGAg 2 15 814 834 [mm9:11:115986546-115986566:-] 0.5014 150 7 -10.76 -0.2621 MIMAT0000535 mmu-miR-29a 338364 Trim65 auuggcuaaaGUC--UACCACGAu ||| :||||||| gggaagcagaCAGGCGUGGUGCUa 2 13 346 369 [mm9:11:115987011-115987034:-] 0.5011 143 7 -17.90 -0.1445 MIMAT0000536 mmu-miR-29c 338364 Trim65 auuggcuaaaguuUACCACGAu :||||||| gaagcagacaggcGUGGUGCUa 2 10 348 369 [mm9:11:115987011-115987032:-] 0.5011 141 7 -15.64 -0.1445 MIMAT0000539 mmu-miR-92a 338364 Trim65 guccggcccUGUUCACGUUAu |:| ||||||| uaaagaauuAUAUGUGCAAUa 2 13 1300 1320 [mm9:11:115986060-115986080:-] 0.5014 148 7 -10.28 -1.2548 MIMAT0000584 mmu-miR-339-5p 338364 Trim65 gcacucgaggacCUCCUGUCCCu |:|||||||| acuaucuaugaaGGGGACAGGGg 2 12 141 163 [mm9:11:115987217-115987239:-] 0.5394 151 7 -23.50 -0.1426 MIMAT0000609 mmu-miR-351 338364 Trim65 guccgagUUUCCCGAG--GAGUCCCu |||| |:|: ||||||| auagaagAAAGCGUUUAACUCAGGGc 2 18 287 312 [mm9:11:115987068-115987093:-] 0.5011 156 7 -19.13 -0.4882 MIMAT0000616 mmu-miR-101b 338364 Trim65 aaGUCGAUAGUGUCA-UGACAu || ||||| :||| ||||| gaCAUCUAUCUUAGUCACUGUu 2 20 227 248 [mm9:11:115987132-115987153:-] 0.5168 139 0 -18.47 -0.3020 MIMAT0000616 mmu-miR-101b 338364 Trim65 aagucGAUAGUGUCAUGACau :| |: : |||||| uuuuuUUUUUUUUGUACUGgg 3 17 723 743 [mm9:11:115986637-115986657:-] 0.5014 124 0 -6.79 -0.1093 MIMAT0000652 mmu-miR-25 338364 Trim65 agucuggcucUGUUCACGUUAc |:| ||||||| uuaaagaauuAUAUGUGCAAUa 2 13 1299 1320 [mm9:11:115986060-115986081:-] 0.5014 148 7 -9.81 -1.2525 MIMAT0000652 mmu-miR-25 338364 Trim65 aguCUGG-CUCUGUUCA-CGUUAc |||| | ||:|| ||||| gcuGACCUCAAUCAGGUGGCAAUc 2 20 252 275 [mm9:11:115985615-115985638:-] 0.4940 122 0 -16.98 -0.1285 MIMAT0000654 mmu-miR-32 338364 Trim65 acGUUGAAUCAU-UACACGUUAu :|| | || ||||||||| uuUAAAGAAUUAUAUGUGCAAUa 2 21 1298 1320 [mm9:11:115986060-115986082:-] 0.5014 155 7 -12.70 -1.2501 MIMAT0000658 mmu-miR-210 338364 Trim65 agucggcgacaGUGUGCGUGUc | |||||||| acacacacacaCUCACGCACAc 2 12 446 467 [mm9:11:115986913-115986934:-] 0.5011 147 7 -15.64 -0.2203 MIMAT0000673 mmu-miR-181b 338364 Trim65 uggguggcugucguUACUUACaa ||||||| uauaaauauuuuauAUGAAUG-- 3 10 1340 1360 [mm9:11:115986020-115986040:-] 0.5014 125 0 -8.04 -0.1927 MIMAT0000674 mmu-miR-181c 338364 Trim65 ugaguggcuguccaACUUACaa |||||| auaaauauuuuauaUGAAUG-- 3 9 1341 1360 [mm9:11:115986020-115986039:-] 0.5014 120 0 -5.25 -0.1963 MIMAT0000708 mmu-miR-363 338364 Trim65 augUCUACCUAUGGCACGUUAa ||| ||| :||||||| uaaAGAAUUAUA-UGUGCAAUa 2 20 1300 1320 [mm9:11:115986060-115986080:-] 0.5014 153 7 -11.48 -1.2501 MIMAT0000748 mmu-miR-383 338364 Trim65 ucggUGUCAGU-GGAAGACUAGa ||| ||| |||||||| gcuaACAUUCAGAGUUCUGAUCu 2 19 768 790 [mm9:11:115986590-115986612:-] 0.5014 157 7 -18.25 -0.2740 MIMAT0000769 mmu-miR-133b 338364 Trim65 aucgaCCAACUUCCCCUGGUUu || ||: ||||||||| gaagaGGGUGGUGGGGACCAAa 2 18 9 30 [mm9:11:115985860-115985881:-] 0.5015 165 7 -29.33 -0.6469 MIMAT0001092 mmu-miR-376b 338364 Trim65 uucacCUACAAGGAGAUACUa ||| | |||||||| aacacGAUAU--CUCUAUGAa 2 17 1198 1216 [mm9:11:115986164-115986182:-] 0.5014 149 7 -12.18 -0.3763 MIMAT0001092 mmu-miR-376b 338364 Trim65 uucaccuACAAGG-AGAUACUa | | |: ||||||| uuuacuuUUUACUAUCUAUGAa 2 15 131 152 [mm9:11:115987228-115987249:-] 0.5303 141 7 -8.20 -0.8469 MIMAT0003128 mmu-miR-485 338364 Trim65 cuuAAGU-AGUGCCGGUCGGAGa | || || || ||||||| cacUGCAGUCUAGG-CAGCCUCc 2 20 119 140 [mm9:11:115985750-115985771:-] 0.4984 148 7 -17.70 -0.1284 MIMAT0003172 mmu-miR-542-3p 338364 Trim65 aaagucaauaGUUAGACAGUGu ||: ||||||| gaguggaaccCAGACUGUCACg 2 13 1104 1125 [mm9:11:115986255-115986276:-] 0.5014 148 7 -16.95 -0.1205 MIMAT0003181 mmu-miR-367 338364 Trim65 agugguaacGAU-UUCACGUUAa :|| | ||||||| uuuaaagaaUUAUAUGUGCAAUa 2 14 1298 1320 [mm9:11:115986060-115986082:-] 0.5014 144 7 -8.30 -1.2513 MIMAT0003889 mmu-miR-758 338364 Trim65 aucaccugguccAGUGUUu |||||| uggguaaacaucUCACAAa 2 8 951 969 [mm9:11:115986411-115986429:-] 0.5014 120 6 -12.25 -0.1381 MIMAT0003780 mmu-miR-490 338364 Trim65 gucguaccucaggaGGUCCAAc ||||||| gccccaagcaagaaCCAGGUUc 2 9 192 213 [mm9:11:115987167-115987188:-] 0.5359 140 7 -14.67 -0.5721 MIMAT0004324 mmu-miR-181d 338364 Trim65 uggguggcuguuguUACUUACaa ||||||| uauaaauauuuuauAUGAAUG-- 3 10 1340 1360 [mm9:11:115986020-115986040:-] 0.5014 125 0 -8.65 -0.1927 MIMAT0004847 mmu-miR-882 338364 Trim65 ugauUACGCGAUUGAGAGAGGa | | |: : ||||||| uugcAGGAGUCCGAUCUCUCCu 2 19 1064 1085 [mm9:11:115986295-115986316:-] 0.5014 142 7 -16.77 -0.1178 MIMAT0004869 mmu-miR-421 338364 Trim65 cgcggGUUAAUU--ACAGACAACUa | :||:: | |||||||| aacagCUGUUGGCCUCUCUGUUGAc 2 19 69 93 [mm9:11:115987287-115987311:-] 0.5465 149 7 -12.58 -0.2498 MIMAT0004896 mmu-miR-590-3p 338364 Trim65 ugAUCGAAUAUGUAUUU-UAAu ||| | |:||||| ||| ccUAGGGAAGAUAUAAAUAUUu 2 20 1329 1350 [mm9:11:115986030-115986051:-] 0.5014 123 0 -7.77 -0.9893 MIMAT0004899 mmu-miR-92b 338364 Trim65 ccuccggcccugcuCACGUUAu ||||||| uuaaagaauuauauGUGCAAUa 2 9 1299 1320 [mm9:11:115986060-115986081:-] 0.5014 140 7 -9.33 -1.2548

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G071935 Trim65 Mus musculus 338364

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Trim65 mmu-miR-218 beg:1131 end:1142 pic:3' TGTACCAATCTAGTTCGTGTT 5'& |||||||| &5' ------------CAAGCACA- 3' Trim65 mmu-miR-122 beg:495 end:509 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& || |||||||| &5' ----------TGACACACTCC- 3' Trim65 mcmv-miR-m108-2-5p.2 beg:404 end:423 pic:3' CACTGGCGAGCGC-TGCTCACT 5'& |. ||| .| | ||||||| &5' --GG-CGCATGGGCACGAGTG- 3' Trim65 mmu-miR-210 beg:414 end:433 pic:3' AGTCGGCG-ACAGTGTGCGTGTC 5'& || || |.|||||||| &5' -----CGAGTG-CGCACGCACA- 3' Trim65 mmu-miR-127star beg:374 end:391 pic:3' TAGTCTCGGGAGACTCGAAGTC 5'& ||.| |||||||| &5' -----AGTCAG--GAGCTTCA- 3' Trim65 mmu-miR-741 beg:775 end:795 pic:3' AGATGTATCTTACCG-TAGAGAGT 5'& |||.| |||||||| &5' -------AGAGTTCTGATCTCTCA 3' Trim65 mmu-miR-205 beg:660 end:676 pic:3' GTCTGAGGCCACCTTACTTCCT 5'& .||.| ||||||| &5' ---GCTTCC-----ATGAAGG- 3' Trim65 mmu-miR-1930 beg:334 end:348 pic:3' TGCGACGTCCATGATACCTCCA 5'& ||. ||||||| &5' ----------TATCATGGAGG- 3' Trim65 mmu-miR-466k beg:428 end:453 pic:3' AGTGTACATGTACATGTGTGTGT 5'& |||| ||| ||||||||| &5' -CACACACACACACACACACACA 3' Trim65 mmu-miR-466k beg:444 end:469 pic:3' AGTGTACATGTACATGTGTGTGT 5'& |||| ||| ||.|||||| &5' -CACACACACACTCACGCACACA 3' Trim65 mmu-miR-574-5p beg:449 end:473 pic:3' TGTGTGAGTGTGTGTGTGTGAGT 5'& ||||||||||.|||||| ||| &5' ACACACTCACGCACACAGACT-- 3' Trim65 mmu-miR-2141 beg:518 end:530 pic:3' TTGAAAAGACTGTGGAGGA 5'& ||||||||| &5' ----------ACACCTCCT 3' Trim65 mmu-miR-2141 beg:839 end:849 pic:3' TTGAAAAGACTGTGGAGGA 5'& ||||||| &5' -----------CACCTCC- 3' Trim65 mmu-miR-707 beg:259 end:276 pic:3' GCATCCGTTCGCC-GTACTGAC 5'& .|| ||||||| &5' -------GAGACACCATGACT- 3' Trim65 mmu-miR-762 beg:183 end:197 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& |.||||||||| &5' -----------GTCCCAGCCCC 3' Trim65 mmu-miR-299 beg:642 end:662 pic:3' TTCGCCAAATG-GCAGGGTGTAT 5'& |||.| .|||||||||| &5' ------TTTGCTTGTCCCACATA 3' Trim65 mmu-miR-92astar beg:34 end:54 pic:3' CATTACGGTGGTTA--GGGGTGGA 5'& ||| |.| |||||||| &5' ------CCAAAAGTGGCCCCACCT 3' Trim65 mmu-miR-146bstar beg:1324 end:1336 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& ||||||||| &5' ------------TCCCTAGGG- 3' Trim65 mmu-miR-125b-5p beg:302 end:312 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& ||||||| &5' --------------CTCAGGG- 3' Trim65 mmu-miR-542-3p beg:1111 end:1125 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& ||. ||||||| &5' ----------CAGACTGTCAC- 3' Trim65 mmu-miR-1958 beg:627 end:646 pic:3' TGAATGACGAA-GGTGAAAGGAT 5'& ||. ||.||||||| &5' ------TGTGAACCGCTTTCCT- 3' Trim65 mmu-miR-214star beg:343 end:361 pic:3' CGTGTCGTTCACATCTGTCCGT 5'& .| ||| |||||||| &5' ----GGGAAGC--AGACAGGC- 3' Trim65 mmu-miR-1199 beg:996 end:1013 pic:3' GGCGCGCTGGCCCTGAGTCT 5'& |.|. |||||||||| &5' --GTGT----GGGACTCAGA 3' Trim65 mmu-miR-340-3p beg:87 end:105 pic:3' CGATATTTCATTGA--CTCTGCCT 5'& |.||| |||||||| &5' ---------TGACTCAGAGACGGA 3' Trim65 mcmv-miR-m108-1star beg:934 end:954 pic:3' GTAAAGCCCGCCAACGAGCACT 5'& .|||.| ||||||||. &5' -GTTTTGTA----TGCTCGTGG 3' Trim65 mmu-miR-141star beg:1331 end:1341 pic:3' AGGTTGTGACGTGACCTTCTAC 5'& ||||||| &5' --------------GGAAGAT- 3' Trim65 mmu-miR-32 beg:1308 end:1321 pic:3' ACGTTGAATCATTACACGTTAT 5'& |||||||||| &5' ------------ATGTGCAATA 3' Trim65 mmu-miR-92a beg:1310 end:1321 pic:3' GTCCGGCCCTGTTCACGTTAT 5'& |||||||| &5' -------------GTGCAATA 3' Trim65 mmu-miR-92b beg:1310 end:1321 pic:3' CCTCCGGCCCTGCTCACGTTAT 5'& |||||||| &5' --------------GTGCAATA 3' Trim65 mmu-miR-770-5p beg:349 end:369 pic:3' GCACCGGGTCTG--TGCACCACGA 5'& ||||| .||||||||| &5' -------CAGACAGGCGTGGTGCT 3' Trim65 mcmv-miR-m01-1 beg:1069 end:1087 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& || |||. ||||||. &5' --GTCCGATC----TCTCCTT- 3' Trim65 mcmv-miR-m107-1-5p beg:1266 end:1288 pic:3' CCACTGAGCTCTGCTCACTGGC 5'& ||| |. ||||.|| &5' --TGAACCCCCATCAGTGGCC- 3' Trim65 mcmv-miR-M23-2 beg:826 end:844 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& ||||| ||| |||||| &5' ---CTTGA--GAGCCCCCCA- 3' Trim65 mghv-miR-M1-6 beg:307 end:328 pic:3' TTTTGGTGGAGTG--TGTCAAAGT 5'& . || | |||||||.| &5' ------GGCTTGCTAACAGTTTTA 3' Trim65 mghv-miR-M1-8 beg:600 end:610 pic:3' CTGGTTTGGGGGTCACTCACGA 5'& ||.|||| &5' --------------TGGGTGC- 3' Trim65 mmu-let-7b beg:514 end:538 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& ..|||||| |||| |||| &5' GGCCACACCTCCTAATCCCTC- 3' Trim65 mmu-let-7bstar beg:471 end:491 pic:3' CCCTTCCGTCATCC---AACATATC 5'& ||| |||| ||||||| &5' ------GCA-TAGGCTTTTGTATA- 3' Trim65 mmu-let-7fstar beg:475 end:491 pic:3' CCCTTCCGTTATCTAACATATC 5'& |||| ||||||| &5' ----AGGCTT----TTGTATA- 3' Trim65 mmu-miR-1186b beg:521 end:536 pic:3' CACCACGTACGGAA-ATTAGGGT 5'& ||| ||||||| &5' ----------CCTCCTAATCCC- 3' Trim65 mmu-miR-1187 beg:429 end:451 pic:3' AATGTGTGTATGTGTGTGTGTAT 5'& ||||||| ||||||||||| &5' --ACACACACACACACACACA-- 3' Trim65 mmu-miR-1193 beg:1279 end:1289 pic:3' CTATCATTTTGCCCACTGGAT 5'& |||.||| &5' -------------GTGGCCT- 3' Trim65 mmu-miR-122 beg:687 end:703 pic:3' GTTTGTGGTAAC-AGTGTGAGGT 5'& ||| |||||.|.| &5' ---------TTGCTCACATTTC- 3' Trim65 mmu-miR-125a-5p beg:291 end:312 pic:3' AGTGTCCAATTTCCCA----GAGTCCCT 5'& |||| || ||||||| &5' ---------AAAGCGTTTAACTCAGGG- 3' Trim65 mmu-miR-129-5p beg:179 end:206 pic:3' CGTTC-GGGTCTGG---CGTTTTTC 5'& | ||| ||||| || ||||.|| &5' GGAAGTCCCAGCCCCAAGCAAGAA- 3' Trim65 mmu-miR-129-5p beg:1245 end:1267 pic:3' CGTTCGGGTCTGGCGTTTTTC 5'& || |.||| .| .||||| &5' GCT-GTCCAACTCATAAAAA- 3' Trim65 mmu-miR-133b beg:554 end:567 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& ||||||.||. &5' ------------GGGGACTAAG 3' Trim65 mmu-miR-135astar beg:269 end:290 pic:3' GC-GGTGCCGAGGTTAGGGATAT 5'& | |.| ||| |.||||| &5' -GACTAAGGCAA----CTCTATA 3' Trim65 mmu-miR-146bstar beg:363 end:387 pic:3' TGGTCTTGAC-TCAGGGATCC-CG 5'& .|.|||.| | |||| ||| || &5' GCTAGAGCAGTAGTC---AGGAGC 3' Trim65 mmu-miR-146bstar beg:804 end:819 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& |||| |||.|||. &5' -CCAG---------CCTGGGGT 3' Trim65 mmu-miR-155 beg:203 end:223 pic:3' TGGGGATAGTGTTAATCGTAATT 5'& || .|. ||||||||. &5' --CCAGGTTC---TTAGCATTG- 3' Trim65 mmu-miR-16 beg:237 end:257 pic:3' GCGGTTATAAATGCACGACGAT 5'& |.|| |.|| ||.||||. &5' -GTCACTGTTC---TGTTGCTG 3' Trim65 mmu-miR-185 beg:1066 end:1085 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& |||||. || ||||||| &5' -CAGGAGT--CCGATCTCTCC- 3' Trim65 mmu-miR-186 beg:702 end:720 pic:3' TCGGGTTTTCCTCTTAAGAAAC 5'& ..||| ||||||.||| &5' -----GGAAGTAGAATTTTTT- 3' Trim65 mmu-miR-1907 beg:238 end:257 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& .|| | .||||.|||| &5' ----TCAC-TGTTCTGTTGCT- 3' Trim65 mmu-miR-1928 beg:614 end:627 pic:3' CTCGACCGTTACATCGA 5'& | .|||.|| &5' ------GTGGTGTGGC- 3' Trim65 mmu-miR-1930 beg:1034 end:1053 pic:3' TGCGACGTCCATG-ATACCTCCA 5'& || ||| |.||||||| &5' -----GCT--TACGTGTGGAGGT 3' Trim65 mmu-miR-1933-5p beg:1023 end:1040 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& .| ||.|||||.|| &5' ----------TGTACGCCATGGCT 3' Trim65 mmu-miR-1933-5p beg:251 end:276 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& .||. || .||||||||||| &5' --GCTGTGAAGAGACACCATGACT 3' Trim65 mmu-miR-1946b beg:7 end:32 pic:3' TTTTC-GTACACGGTGGTGACGGGCCG 5'& || || ||||||||. ||||.|| &5' ---AGACAGGTGCCACCG-TGCCTGG- 3' Trim65 mmu-miR-1950 beg:600 end:612 pic:3' ACTGGTATAGGAATCTACGTCT 5'& |.|.||||| &5' ------------TGGGTGCAG- 3' Trim65 mmu-miR-1956 beg:82 end:106 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& ||.|.|||||||| |||| &5' TCTGTTGACTCAGAGACGGAC- 3' Trim65 mmu-miR-1957 beg:655 end:671 pic:3' CAGTATACGAGATGGTGAC 5'& ||||||||. |||. &5' --CATATGCTT--CCAT-- 3' Trim65 mmu-miR-1959 beg:791 end:809 pic:3' GAGGTGACTCGATGTAGGGG 5'& .|||||| | |||||.|| &5' --TCACTGA-CAACATCTCC 3' Trim65 mmu-miR-1968 beg:55 end:76 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& |. |.| ||||||||. &5' ---CTTCTAGAAGGAACAGCTGT- 3' Trim65 mmu-miR-1969 beg:220 end:239 pic:3' TGGGTACAATTTCAGAGGTAGAA 5'& |.|| ||.||||| &5' ---CGTGGACA----TCTATCTT 3' Trim65 mmu-miR-196astar beg:236 end:258 pic:3' AGTCCGTCA-AAGAACAACGGCT 5'& |.|| || ||| ||||||.| &5' TTAGTCACTGTTC-TGTTGCTG- 3' Trim65 mmu-miR-1970 beg:483 end:505 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& |. |||.. ||||||||| &5' ----GTATATTTAAAGTGACACA 3' Trim65 mmu-miR-1982.2 beg:999 end:1022 pic:3' GACACCCTCTTG--TATCCCACT 5'& ||||||| .|.|||||. &5' -TGTGGGACTCAGAGTGGGGTGG 3' Trim65 mmu-miR-1982.2 beg:806 end:821 pic:3' GACACCCTCTTGTATCCCACT 5'& |.| |.|||||| &5' ---------AGCCTGGGGTGA 3' Trim65 mmu-miR-1982star beg:521 end:542 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& |||||. |||||.||| &5' CCTCCTAAT--CCCTCTCAA 3' Trim65 mmu-miR-1982star beg:502 end:532 pic:3' GGAGGGG-----TCC--TG-GGAGGGTT 5'& |||||| ||| || |||||.|| &5' -CTCCCCCAACAAGGCCACACCTCCTAA 3' Trim65 mmu-miR-19a beg:471 end:491 pic:3' AGTCAAAACGTATCT--AAACGTGT 5'& ||||||. ||||.|.| &5' --------GCATAGGCTTTTGTATA 3' Trim65 mmu-miR-19b beg:471 end:491 pic:3' AGTCAAAACGTA-CCT-AAACGTGT 5'& |||| || ||||.|.| &5' --------GCATAGGCTTTTGTATA 3' Trim65 mmu-miR-201 beg:734 end:746 pic:3' TTCTTGTTACGGAATGACTCAT 5'& |||||.||| &5' -------------TACTGGGTA 3' Trim65 mmu-miR-202-5p beg:165 end:186 pic:3' TTTCTTCATATACGTATCCTT 5'& |.|||. ||||||| &5' AGAGAGAAATTAA-ATAGGAA 3' Trim65 mmu-miR-204 beg:338 end:350 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& | .|||||| &5' ------------ATGGAGGGAA 3' Trim65 mmu-miR-211 beg:338 end:350 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& | .|||||| &5' ------------ATGGAGGGAA 3' Trim65 mmu-miR-2139 beg:873 end:895 pic:3' CGTCAATGGTCCTCGTCGCGTCGA 5'& |.|||||| |||| ||| || &5' GTAGTTACAAGGA--AGCCCA--- 3' Trim65 mmu-miR-2146 beg:790 end:810 pic:3' GTGTACCTTGGGAAGAGGTG 5'& ||| ||| |||||| &5' CACTGACAACA--TCTCCA- 3' Trim65 mmu-miR-2146 beg:824 end:845 pic:3' GTGTAC-CTTGGGAAGAGGTG 5'& .|| || ||.||| | |||| &5' TACTTGAGAGCCC--C-CCAC 3' Trim65 mmu-miR-214star beg:563 end:588 pic:3' CGTGTCGTTC-ACATCTGTCCGT 5'& ||.|| ||.| ||||||||| || &5' GCGCA-CAGGCTGTAGACAGCCA 3' Trim65 mmu-miR-218-2star beg:1219 end:1240 pic:3' GCGCCA--CGAACTGTCTTGGTAC 5'& ||| ||| ||||||.||| &5' ---GGTTGGCT---CAGAACTATG 3' Trim65 mmu-miR-220 beg:602 end:622 pic:3' TTCACAGACTGTG-ACACCACC 5'& ..||| | .|| ||||||| &5' GGGTG-CA-GCAGATGTGGTG- 3' Trim65 mmu-miR-221 beg:575 end:595 pic:3' CTTTGGGTC-GTCTGTTACATCGA 5'& .|| ||| ||||||.|. &5' ------TAGACAGCCAATGTGGT- 3' Trim65 mmu-miR-222 beg:575 end:595 pic:3' TGGGTCA-TCGGTCTACATCGA 5'& .|| ||||| ||||.|. &5' ---TAGACAGCCA-ATGTGGT- 3' Trim65 mmu-miR-222 beg:600 end:622 pic:3' TGGGTCATCG--GTCTACATCGA 5'& . .|| || |||||||.|. &5' --TGGGT-GCAGCAGATGTGGT- 3' Trim65 mmu-miR-222 beg:1232 end:1253 pic:3' TGGGT-CATC-GGTCT-ACATCGA 5'& |.| |||| ||||. ||| &5' --CTATGTAGACCAGGCTGT---- 3' Trim65 mmu-miR-223 beg:782 end:801 pic:3' ACCCCATAAACTGTT---TGACTGT 5'& |||. ||||||| &5' ---------TGATCTCTCACTGACA 3' Trim65 mmu-miR-23a beg:618 end:635 pic:3' CCTTTAGGGACCGT-TACACTA 5'& . ||||| |||||| &5' -------TGTGGCAGATGTGA- 3' Trim65 mmu-miR-23b beg:616 end:635 pic:3' CCATTAGGGACCGT-TACACTA 5'& ||..| ||||| |||||| &5' -GTGGTG--TGGCAGATGTGA- 3' Trim65 mmu-miR-25 beg:1300 end:1320 pic:3' AGTCTGGCTCTGTTCACGTTAC 5'& ||| |.| ||||||| &5' --AGAATT--ATATGTGCAAT- 3' Trim65 mmu-miR-27a beg:240 end:262 pic:3' CGCCTTGAAT---CGGTGACACTT 5'& ||| |. ||||||| &5' -----ACTGTTCTGTTGCTGTGAA 3' Trim65 mmu-miR-296-3p beg:829 end:852 pic:3' CCTCTCGGA-GGTGGGTTGGGAG 5'& ||||||| |||||. ||| &5' -GAGAGCCCCCCACCTCCCCC-- 3' Trim65 mmu-miR-299 beg:681 end:700 pic:3' TTCGCCAAATGGCAGGGTGTAT 5'& |.||||| ..| |.||||| &5' --GTGGTTTTTTG-CTCACAT- 3' Trim65 mmu-miR-299star beg:1236 end:1247 pic:3' TACATACACCCTGCCATTTGGT 5'& |||.|||| &5' --------------GTAGACCA 3' Trim65 mmu-miR-29a beg:353 end:370 pic:3' ATTGGCTAAAGTC--TACCACGAT 5'& ||| .|||||||| &5' ----------CAGGCGTGGTGCTA 3' Trim65 mmu-miR-29b beg:358 end:370 pic:3' TTGTGACTAAAGTTTACCACGAT 5'& .|||||||| &5' --------------GTGGTGCTA 3' Trim65 mmu-miR-29bstar beg:189 end:210 pic:3' ATTTGGTGGTATAC-TTTGGTCG 5'& |.|| ||| .|||||| &5' --AGCC-CCAAGCAAGAACCAG- 3' Trim65 mmu-miR-29bstar beg:1231 end:1248 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& ||.||.| |.||||| &5' ------ACTATGT-AGACCAG- 3' Trim65 mmu-miR-29c beg:353 end:370 pic:3' ATTGGCTAAAGTT--TACCACGAT 5'& ||. .|||||||| &5' ----------CAGGCGTGGTGCTA 3' Trim65 mmu-miR-300 beg:470 end:491 pic:3' CTTCTCTCGAA--CGGGAACGTAT 5'& ||| ||..|||.||| &5' ------AGCATAGGCTTTTGTATA 3' Trim65 mmu-miR-3072star beg:1071 end:1103 pic:3' GGAC-GGGAGGGAG------C-CCCAGGGA 5'& || |.||||.|| | ||||.|. &5' CCGATCTCTCCTTCTACCATGTGGGTTCT- 3' Trim65 mmu-miR-30bstar beg:1155 end:1173 pic:3' CTGCATTTGTAGGT--GTAGGGTC 5'& .|||| ||||||. &5' --------TATCCCATCATCCCG- 3' Trim65 mmu-miR-326 beg:1000 end:1014 pic:3' TGACCTCCTTCCC-GGGTCTCC 5'& ||| |.||||| &5' ----------GGGACTCAGAG- 3' Trim65 mmu-miR-330 beg:559 end:582 pic:3' CGGATTC-TGTGTCCGG-GTCTCT 5'& ||||| .|||||||. .||| &5' --CTAAGCGCACAGGCTGTAGA-- 3' Trim65 mmu-miR-335-5p beg:928 end:954 pic:3' TGTAA--AAAGCAATAACGAGAACT 5'& .|||| |||.|| ||||| ||. &5' GCATTTGTTTTGTA--TGCTCGTGG 3' Trim65 mmu-miR-338-3p beg:861 end:874 pic:3' GTTGTTTTAGTGACTACGACCT 5'& ||||||.||| &5' -----------CTGATGTTGG- 3' Trim65 mmu-miR-339-5p beg:142 end:164 pic:3' GCACTCGAGG-AC--CTCCTGTCCCT 5'& ||. || |.||||||||. &5' -------TCTATGAAGGGGACAGGGG 3' Trim65 mmu-miR-3470b beg:996 end:1017 pic:3' GGTCGGACCA-GATGTCTCACT 5'& .||. ||| || |||||||. &5' -TAGTGTGGGACT-CAGAGTGG 3' Trim65 mmu-miR-3473 beg:1063 end:1085 pic:3' CCGA-CTC-GG-TAGAGAGGT 5'& || ||| || |||||||| &5' -GCAGGAGTCCGATCTCTCC- 3' Trim65 mmu-miR-3475 beg:789 end:811 pic:3' AAGT--TTGGTACACGGAGGTCT 5'& ||| .|| .|||||| &5' -TCACTGACAACA--TCTCCAG- 3' Trim65 mmu-miR-34a beg:229 end:249 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& |.| || || |||||.. &5' ----CTATCTTAGTCACTGTT- 3' Trim65 mmu-miR-351 beg:291 end:312 pic:3' GTCCGAGTTTCCCGAG--GAGTCCCT 5'& |||| |.|. ||||||| &5' -------AAAGCGTTTAACTCAGGG- 3' Trim65 mmu-miR-361 beg:849 end:870 pic:3' CATGGGGACCTCTAAGACTATT 5'& |||| .|||||||. &5' ---CCCCCCCATGTTCTGATG- 3' Trim65 mmu-miR-363 beg:1300 end:1320 pic:3' ATGTCTACCTATGGCACGTTAA 5'& ||| ||| .||||||| &5' ---AGAATTATA-TGTGCAAT- 3' Trim65 mmu-miR-375 beg:112 end:130 pic:3' AGTGCGCTCGGCTTGCTTGTTT 5'& ||||| ||||||| &5' ------GAGCCTTA-GAACAAA 3' Trim65 mmu-miR-376b beg:1204 end:1216 pic:3' TTCACCTACAAGGAGATACTA 5'& .|||||||| &5' -----------TCTCTATGA- 3' Trim65 mmu-miR-378star beg:363 end:386 pic:3' TGTGTCCTGGACCTCAGTCCTC 5'& . | || | | ||||||||| &5' GTGCTAGAGCAGTAGTCAGGAG 3' Trim65 mmu-miR-381 beg:470 end:491 pic:3' TGTCTCTCGAA--CGGGAACATAT 5'& ||| ||..||||||| &5' ------AGCATAGGCTTTTGTATA 3' Trim65 mmu-miR-382 beg:1045 end:1066 pic:3' GCTTAGGTGGTGCTTGTTGAAG 5'& ||. || |.||||||| &5' -GAGGTCAGA--GGACAACTT- 3' Trim65 mmu-miR-383 beg:769 end:791 pic:3' TCGGTGTCAGTGG-AAGACTAGA 5'& ||| ||| ||||||||| &5' ----ACATTCAGAGTTCTGATCT 3' Trim65 mmu-miR-384-3p beg:166 end:186 pic:3' TAACACTTGTTAAAG-ATCCTTA 5'& ||. |||| |||||| &5' -----GAGAAATTAAATAGGAA- 3' Trim65 mmu-miR-423-5p beg:1067 end:1088 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& ..|||| || ||||| ||.|| &5' GGAGTC-CGATCTCT--CCTTC- 3' Trim65 mmu-miR-450a-3p beg:793 end:811 pic:3' TACTTAC-GTTTCGTAGGGGTTA 5'& || ||| ||||.|||. &5' -----TGACAA--CATCTCCAG- 3' Trim65 mmu-miR-450a-3p beg:180 end:199 pic:3' TACTTACGTTTCGTA---GGGGTTA 5'& .|||. |||||| &5' --------GAAGTCCCAGCCCCAA- 3' Trim65 mmu-miR-465a-3p beg:382 end:401 pic:3' AGATGAATCTTTCCGGGACTAG 5'& .||| .||||||| &5' ---GCTTCACA---TCCTGATC 3' Trim65 mmu-miR-465a-3p beg:771 end:790 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |.| ||| |..|||||| &5' ---ATTCAGA---GTTCTGATC 3' Trim65 mmu-miR-465b-3p beg:1206 end:1226 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||. ||| |||||.|. &5' TCTAT---GAAC--CCCTGGTT 3' Trim65 mmu-miR-465b-3p beg:382 end:401 pic:3' AGATGAATCTTTCCGGGACTAG 5'& .||| .||||||| &5' ---GCTTCACA---TCCTGATC 3' Trim65 mmu-miR-465b-3p beg:771 end:790 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |.| ||| |..|||||| &5' ---ATTCAGA---GTTCTGATC 3' Trim65 mmu-miR-465c-3p beg:382 end:401 pic:3' AGATGAATCTTTCCGGGACTAG 5'& .||| .||||||| &5' ---GCTTCACA---TCCTGATC 3' Trim65 mmu-miR-465c-3p beg:771 end:790 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |.| ||| |..|||||| &5' ---ATTCAGA---GTTCTGATC 3' Trim65 mmu-miR-466d-5p beg:413 end:433 pic:3' GTACATGTACATGCGTGTGTGT 5'& | ||. ||.|||||.|||| &5' ---GCACGAGTGCGCACGCACA 3' Trim65 mmu-miR-466f-5p beg:417 end:438 pic:3' GTACGTGTACGTGTGTGTGCAT 5'& .|||.|| |||||||||| &5' -GTGCGCACGCACACACAC--- 3' Trim65 mmu-miR-466h beg:443 end:469 pic:3' ATGTGTGTTCGTGTA--CGTGTGT 5'& ||||||| ||| ||||||| &5' -ACACACACACACTCACGCACACA 3' Trim65 mmu-miR-497 beg:236 end:258 pic:3' ATGTTTGGTGTCAC-ACGACGAC 5'& | ||| || ||.||||| &5' ----AGTCACTGTTCTGTTGCTG 3' Trim65 mmu-miR-503 beg:235 end:257 pic:3' GACGTCA-TGACAAGGGCGACGAT 5'& .||| |||||| |.|.||||. &5' ---TAGTCACTGTT-CTGTTGCTG 3' Trim65 mmu-miR-509-5p beg:802 end:820 pic:3' TACTAACGGTGTAAGACCTCAT 5'& | || ||||.||. &5' -------CTCCAGCCTGGGGTG 3' Trim65 mmu-miR-511 beg:0 end:9 pic:3' ACTCACGTCTCGTTTTCCGTA 5'& ..|||||| &5' ------------GGAAGGCA- 3' Trim65 mmu-miR-541 beg:516 end:537 pic:3' TCACACTGGT-TGTAGTCTTAGGGAA 5'& |.||| || || ||||||| &5' -----GGCCACACCTCCTAATCCCT- 3' Trim65 mmu-miR-541 beg:901 end:929 pic:3' TCACACTGGTTGTAGT----C-TTAGGGAA 5'& || || || | |||.|||| &5' ----TGTCCTTT-TCTTTTTGTAATTCCTT 3' Trim65 mmu-miR-574-5p beg:435 end:461 pic:3' TGTGTGAGTGTGTGTGTGTGAGT 5'& |||||| |||||||||||||||| &5' ACACACACACACACACACACTCA 3' Trim65 mmu-miR-599 beg:490 end:505 pic:3' CAAACTATTTGACTGTGTT 5'& |||| ||||||| &5' ------TAAAGTGACACA- 3' Trim65 mmu-miR-669c beg:429 end:452 pic:3' TGTGTGTAGGTGTGTGT-TGATA 5'& ||||||| |||||||| || &5' ACACACACACACACACACAC--- 3' Trim65 mmu-miR-669e beg:417 end:441 pic:3' TACTTGTACGTGTGTGTTCTGT 5'& .|| .|| ||||||||| ||| &5' GTGCGCACGCACACACAC-ACA 3' Trim65 mmu-miR-669n beg:425 end:445 pic:3' TGTGTGTAGGTGTGTGTTTA 5'& .|||||| |||||||| &5' GCACACACACACACACA--- 3' Trim65 mmu-miR-672 beg:436 end:461 pic:3' AGTGTGTGTCATGTG-GTTGGAGT 5'& |||||||| |||| || |||| &5' -CACACACAC-ACACACACACTCA 3' Trim65 mmu-miR-677 beg:781 end:799 pic:3' AGTCTTCGATTAGT-AGTGACTT 5'& ||.||| ||||||| &5' -------CTGATCTCTCACTGA- 3' Trim65 mmu-miR-684 beg:1329 end:1341 pic:3' AACTGAACTTCCCTTTTGA 5'& ||||||.|. &5' ---------AGGGAAGAT- 3' Trim65 mmu-miR-686 beg:336 end:355 pic:3' AGAAGTGGCAGACCCTTCGTTA 5'& |||. | ||||||||. &5' ---TCATGGA--GGGAAGCAG- 3' Trim65 mmu-miR-689 beg:542 end:563 pic:3' CCTGGGGCGGCTCGCCCCTGC 5'& . || || ||.|||||| &5' --GTTCCACCAAGTGGGGAC- 3' Trim65 mmu-miR-692 beg:157 end:173 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& |.|| ||.||||| &5' ----GGGGA---CAGAGAGA- 3' Trim65 mmu-miR-696 beg:412 end:430 pic:3' GGGTG-TCGTTCGTGTGCG 5'& ||| ||. ||.||||| &5' --CACGAGT--GCGCACGC 3' Trim65 mmu-miR-696 beg:1125 end:1143 pic:3' GGGTGTCGTTCGTGTGCG 5'& . ||||||||||||. &5' -TGACAGCAAGCACAT-- 3' Trim65 mmu-miR-705 beg:833 end:852 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& ||| ||||||||||| || &5' -GCC--CCCCACCTCCC-CC 3' Trim65 mmu-miR-706 beg:676 end:692 pic:3' AAAAAACTCTGTCCCAAAGAGA 5'& ||.| |||||.|. &5' -----TGGGT---GGTTTTTT- 3' Trim65 mmu-miR-711 beg:1074 end:1103 pic:3' GAATGTAGAGAGGG---------GCCCAGGG 5'& ||||||||. .||||.|. &5' -----ATCTCTCCTTCTACCATGTGGGTTCT 3' Trim65 mmu-miR-717 beg:1178 end:1198 pic:3' TCTCTTCCATAGA-GACAGACTC 5'& |||| |.| .|||.||| &5' -----AGGTTTTTGTTGTTTGA- 3' Trim65 mmu-miR-741 beg:1062 end:1084 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& .|.|| .||.| ||||||| &5' -TTGCA-GGAGTCCGATCTCTC- 3' Trim65 mmu-miR-758 beg:868 end:886 pic:3' ATCACCTGGTCCAGTGTTT 5'& |.|||| ||.||||. &5' TGGTGGTA---GTTACAAG 3' Trim65 mmu-miR-758 beg:947 end:970 pic:3' ATCACCTG---GTCCAGTGTTT 5'& ||||. || ||||||| &5' --GTGGGTAAACATCTCACAAA 3' Trim65 mmu-miR-762 beg:792 end:814 pic:3' CGAGACAGGGCC-GGGGTCGGGG 5'& ||| | |.||||||. &5' ---CTGACAACATCTCCAGCCT- 3' Trim65 mmu-miR-764-3p beg:1273 end:1291 pic:3' TGTCAACGGTGA-TACCGGAGGA 5'& |||. .|||||||. &5' -------CCATCAGTGGCCTCT- 3' Trim65 mmu-miR-764-3p beg:67 end:86 pic:3' TGTCAACGGTGATACCGGAGGA 5'& |||| ||. |||||||. &5' ACAGCTGT-----TGGCCTCT- 3' Trim65 mmu-miR-767 beg:349 end:368 pic:3' ACGAGTCTGTTGGTACCACGT 5'& ||||||. |.|||||| &5' ----CAGACAGGCGTGGTGC- 3' Trim65 mmu-miR-7b beg:962 end:989 pic:3' TGTTGTTTTAGTGTTC-AGAAGGT 5'& |||| |||||.| || ||||.|| &5' ACAAAAAAATTAGAAATTCTTTCA 3' Trim65 mmu-miR-804 beg:679 end:699 pic:3' AGGTCCACTCCTTGTTGAGTGT 5'& .||||. .|||||| &5' ---GGGTGGTTTTTTGCTCACA 3' Trim65 mmu-miR-876-3p beg:627 end:641 pic:3' ACTTAATGAAACATTTGGTGAT 5'& |||.||||.|| &5' ----------TGTGAACCGCT- 3' Trim65 mmu-miR-877star beg:1040 end:1062 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& | | ||||| |||||||| &5' -GTGTGGAGGTC--AGAGGACA 3' Trim65 mmu-miR-882 beg:1069 end:1085 pic:3' TGATTACGCGATTGAGAGAGGA 5'& |. | |||||||| &5' ------GTCCGA--TCTCTCCT 3' Trim65 mmu-miR-883a-3p beg:1138 end:1160 pic:3' TATGACTCT--CGACAACGTCAAT 5'& |.||.|| || |||||||| &5' --ATTGGGATAGC---TGCAGTTA 3' Trim65 mmu-miR-883b-3p beg:1138 end:1160 pic:3' TATGACTCTCTACAACGTCAAT 5'& |.||.|| | |||||||| &5' --ATTGGGATA-GCTGCAGTTA 3' Trim65 mmu-miR-220 beg:577 end:596 pic:3' TTCACAGACTGTG----ACACCACC 5'& |||| ||||||| &5' --------GACAGCCAATGTGGTG- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim65 RAID00048368 mmu-miR-133b-3p miRNA MIMAT0000769 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID00135907 mmu-miR-669m-5p miRNA MIMAT0017346 Trim65 mRNA 338364 CLIP-seq 0.5483 Trim65 RAID00206989 mmu-miR-339-5p miRNA MIMAT0000584 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID00359533 mmu-miR-466n-5p miRNA MIMAT0014893 Trim65 mRNA 338364 CLIP-seq 0.5483 Trim65 RAID00382165 mmu-miR-181c-5p miRNA MIMAT0000674 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID00405892 mmu-miR-485-5p miRNA MIMAT0003128 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID00424521 mmu-miR-466l-5p miRNA MIMAT0017322 Trim65 mRNA 338364 CLIP-seq 0.5483 Trim65 RAID00551191 mmu-miR-186-5p miRNA MIMAT0000215 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID00598456 mmu-miR-29a-3p miRNA MIMAT0000535 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID00624645 mmu-miR-367-3p miRNA MIMAT0003181 Trim65 mRNA 338364 Prediction 0.2202 Trim65 RAID00688212 mmu-miR-383-5p miRNA MIMAT0000748 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID00876606 mmu-miR-29b-3p miRNA MIMAT0000127 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID00964630 mmu-miR-181a-5p miRNA MIMAT0000210 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01090020 mmu-miR-590-3p miRNA MIMAT0004896 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01091964 mmu-miR-101b-3p miRNA MIMAT0000616 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01101760 mmu-miR-6934-5p miRNA MIMAT0027768 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01372565 mmu-miR-181b-5p miRNA MIMAT0000673 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01379602 mmu-miR-376b-3p miRNA MIMAT0001092 Trim65 mRNA 338364 Prediction 0.2202 Trim65 RAID01502453 mmu-miR-26b-5p miRNA MIMAT0000534 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01566795 mmu-miR-185-5p miRNA MIMAT0000214 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01650223 mmu-miR-490-3p miRNA MIMAT0003780 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01656012 mmu-miR-299a-3p miRNA MIMAT0004577 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01698164 mmu-miR-382-5p miRNA MIMAT0000747 Trim65 mRNA 338364 CLIP-seq 0.5483 Trim65 RAID01751477 mmu-miR-205-5p miRNA MIMAT0000238 Trim65 mRNA 338364 Prediction 0.2202 Trim65 RAID01775927 mmu-miR-383-3p miRNA MIMAT0017082 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01803480 mmu-miR-574-5p miRNA MIMAT0004893 Trim65 mRNA 338364 CLIP-seq//Prediction 0.6308 Trim65 RAID01804574 mmu-miR-421-3p miRNA MIMAT0004869 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01843580 mmu-miR-882 miRNA MIMAT0004847 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01897976 mmu-miR-210-5p miRNA MIMAT0017052 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID01968202 mmu-miR-181d-5p miRNA MIMAT0004324 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02059802 mmu-miR-101a-3p miRNA MIMAT0000133 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02200938 mmu-miR-466d-5p miRNA MIMAT0004930 Trim65 mRNA 338364 CLIP-seq//Prediction 0.6308 Trim65 RAID02219726 mmu-miR-125b-5p miRNA MIMAT0000136 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02265857 mmu-miR-7243-5p miRNA MIMAT0029910 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02296354 mmu-miR-7035-3p miRNA MIMAT0027975 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02323622 mmu-miR-363-3p miRNA MIMAT0000708 Trim65 mRNA 338364 Prediction 0.2202 Trim65 RAID02418523 mmu-miR-6769b-3p miRNA MIMAT0028041 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02532095 mmu-miR-26a-5p miRNA MIMAT0000533 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02534757 mmu-miR-92a-3p miRNA MIMAT0000539 Trim65 mRNA 338364 Prediction 0.2202 Trim65 RAID02548451 mmu-miR-466h-5p miRNA MIMAT0004884 Trim65 mRNA 338364 CLIP-seq 0.5483 Trim65 RAID02579016 mmu-miR-185-3p miRNA MIMAT0016996 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02704995 mmu-miR-345-5p miRNA MIMAT0000595 Trim65 mRNA 338364 CLIP-seq 0.5483 Trim65 RAID02709933 mmu-miR-351-5p miRNA MIMAT0000609 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02745819 mmu-miR-758-3p miRNA MIMAT0003889 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02757956 mmu-miR-133a-3p miRNA MIMAT0000145 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02865918 mmu-miR-146b-3p miRNA MIMAT0004826 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID02883919 mmu-miR-154-5p miRNA MIMAT0000164 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID03001640 mmu-miR-141-5p miRNA MIMAT0004533 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID03008060 mmu-miR-466j miRNA MIMAT0005848 Trim65 mRNA 338364 CLIP-seq 0.5483 Trim65 RAID03226619 mmu-miR-466k miRNA MIMAT0005845 Trim65 mRNA 338364 CLIP-seq//Prediction 0.6308 Trim65 RAID03236788 mmu-miR-125a-5p miRNA MIMAT0000135 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID03265812 mmu-miR-29c-3p miRNA MIMAT0000536 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID03284677 mmu-miR-92b-3p miRNA MIMAT0004899 Trim65 mRNA 338364 Prediction 0.2202 Trim65 RAID03309722 mmu-miR-210-3p miRNA MIMAT0000658 Trim65 mRNA 338364 CLIP-seq//Prediction 0.6308 Trim65 RAID03323253 mmu-miR-32-5p miRNA MIMAT0000654 Trim65 mRNA 338364 Prediction 0.2202 Trim65 RAID03443803 mmu-miR-25-3p miRNA MIMAT0000652 Trim65 mRNA 338364 Prediction 0.2202 Trim65 RAID03736519 mmu-miR-466m-5p miRNA MIMAT0014882 Trim65 mRNA 338364 CLIP-seq 0.5483 Trim65 RAID03740855 mmu-miR-137-3p miRNA MIMAT0000149 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID03792079 mmu-miR-1199-5p miRNA MIMAT0005860 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID03888798 mmu-miR-466i-5p miRNA MIMAT0017325 Trim65 mRNA 338364 CLIP-seq//Prediction 0.6308 Trim65 RAID03890530 mmu-miR-542-3p miRNA MIMAT0003172 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID03898535 mmu-miR-122-5p miRNA MIMAT0000246 Trim65 mRNA 338364 Prediction 0.1828 Trim65 RAID04035097 mmu-miR-6946-3p miRNA MIMAT0027793 Trim65 mRNA 338364 Prediction 0.1828