DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Usp17la; Dub-1; Dub1 ATTTA 179-1759 2253-2257;2283-2287 Usp17la; Dub-1; Dub1 WWATTTAWW 179-1759 2251-2259 Usp17la; Dub-1; Dub1 WWWATTTAWWW 179-1759 2250-2260 Usp17la; Dub-1; Dub1 WWWWATTTAWWWW 179-1759 2249-2261

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004531 mmu-miR-135a* 13531 Dub1 gcggugccgagguuAGGGAUAu ||||||| gcuaucccaaaaguUCCCUAUa 2 9 539 560 [mm9:7:112010823-112010844:+] 0.5001 140 7 -17.17 -0.8206 MIMAT0000154 mmu-miR-142-5p 13531 Dub1 ucAUCA-CGAAAGAUGAAAUAc || | | | |:| |||||| guUAUUAGAUAUUUUCUUUAUu 2 20 505 526 [mm9:7:112010789-112010810:+] 0.5001 126 6 -6.18 -0.1131 MIMAT0004622 mmu-let-7c-1* 13531 Dub1 ccUUUC---GAUCUUCCAA-CAUGUc |||| | ||:| ||| ||||| aaAAAGUGCCCAGGAUGUUGGUACAg 2 21 183 208 [mm9:7:112010467-112010492:+] 0.5117 127 0 -16.66 -0.3987 MIMAT0000672 mmu-miR-199b* 13531 Dub1 cuuguccaUCAGAUUUGUGACCc | || ||||||| agagacuaAAUCACCACACUGGa 2 16 284 306 [mm9:7:112010568-112010590:+] 0.5014 143 7 -12.22 -0.5307 MIMAT0000672 mmu-miR-199b* 13531 Dub1 cuuguccaUCAGAUUUGUGACCc || | ||||||| agacccuaAGAAAACACACUGGa 2 16 711 733 [mm9:7:112010995-112011017:+] 0.5114 143 7 -11.07 -0.7166 MIMAT0004670 mmu-miR-7a* 13531 Dub1 auaccgucugacacuAAACAAc |||||| uuuuuaaauuuauuuUUUGUUa 2 8 487 508 [mm9:7:112010771-112010792:+] 0.5001 120 6 -1.43 -0.4284 MIMAT0003373 mmu-miR-302b* 13531 Dub1 ucUUUCGUAA--GGGUACAAUUUCa |:: ::|| : || ||||||| ccAGGAUGUUGGUACAGGUUAAAGa 2 22 192 216 [mm9:7:112010476-112010500:+] 0.5028 148 7 -10.98 -0.3450 MIMAT0003375 mmu-miR-302c* 13531 Dub1 cgUCCAUUGGGGUACAAUUUCg | || : : || ||||||| ggAUGUUGGUACAGGUUAAAGa 2 21 195 216 [mm9:7:112010479-112010500:+] 0.5028 152 7 -10.98 -0.3506 MIMAT0004820 mmu-miR-744* 13531 Dub1 uccAACUCCAA--UCA--CCGUUGUc | ||| || : | ||||||| guuUGGAGUUUUCGCUCAGGCAACAa 2 20 743 768 [mm9:7:112011027-112011052:+] 0.5233 141 7 -12.60 -0.6713 MIMAT0014815 mmu-miR-3099* 13531 Dub1 guucccgacCU-UCCUUCGACc || | ||||||| cagguuaaaGACAAGAAGCUGg 2 13 206 227 [mm9:7:112010490-112010511:+] 0.5028 143 7 -18.28 -0.3521 MIMAT0003474 mmu-miR-694 13531 Dub1 gaAGUCCGUUGUAAAAGuc |:| :|:|||||| ugUUAUUAGAUAUUUUCuu 3 18 504 522 [mm9:7:112010788-112010806:+] 0.5001 129 0 -6.41 -0.1538 MIMAT0003487 mmu-miR-697 13531 Dub1 agaggUGUC-CUGGUCCUACAa | || | ||||||||| gaaaaAAAGUGCCCAGGAUGUu 2 17 180 201 [mm9:7:112010464-112010485:+] 0.5117 155 7 -18.71 -0.2455 MIMAT0003495 mmu-miR-705 13531 Dub1 acGGGUGGGGUGGAGGGUGg |||| |||| ||||||| uaCCCA-CCCA-CUCCCACu 2 19 583 600 [mm9:7:112010867-112010884:+] 0.5001 162 7 -33.75 -0.3426 MIMAT0003781 mmu-miR-676* 13531 Dub1 cguUCAGGAUUCCAACAUCUCa |||:| | ||||||| uguAGUUC--ACCCUGUAGAGa 2 20 812 831 [mm9:7:112011096-112011115:+] 0.5289 144 7 -13.25 -0.4670 MIMAT0005292 mmu-miR-582-3p 13531 Dub1 aacccaAGUCA-ACA--AGUUGUCc |:||| ||| ||||||| uuauucUUAGUGUGUGAUCAACAGu 2 17 841 865 [mm9:7:112011125-112011149:+] 0.5289 154 7 -12.93 -0.6302 MIMAT0005830 mmu-miR-466l 13531 Dub1 uuaUACACACGUACAUAAAUau || | | | | |||||| uagAUAUUUUC-UUUAUUUAca 3 20 510 530 [mm9:7:112010794-112010814:+] 0.5001 129 0 -1.34 -0.1811 MIMAT0005830 mmu-miR-466l 13531 Dub1 uuauacacacguacaUAAAUAu |||||| uuccuuuuuuuuuaaAUUUAUu 2 8 479 500 [mm9:7:112010763-112010784:+] 0.5001 120 6 -2.15 -0.2367 MIMAT0009395 mmu-miR-1932 13531 Dub1 ggcuggAUCGCGACAGG-CGUUg |||| || ||| |||| ucugaaUAGC-CUCUCCUGCAAc 2 17 242 263 [mm9:7:112010526-112010547:+] 0.5028 122 0 -23.44 -0.1977 MIMAT0009399 mmu-miR-1935 13531 Dub1 ucucuAGGCGGUCGGAGACGGa ||| ||| ||||||| uacccUCCCCCA-ACUCUGCCa 2 18 559 579 [mm9:7:112010843-112010863:+] 0.5001 155 7 -19.92 -0.5760 MIMAT0009426 mmu-miR-1955 13531 Dub1 uuuucgacGUCACGUAGGAC-CCUGa ||| || ||||| |||| cacucacaCAG-GC-UCCUGUGGACa 2 18 13 36 [mm9:7:112010297-112010320:+] 0.5104 121 0 -22.10 -0.5081 MIMAT0009431 mmu-miR-1958 13531 Dub1 ugaauGACGAAGGUGAAAGGAu || |||:| ||||||| cuccuCUCCUUUC-CUUUCCUu 2 18 454 474 [mm9:7:112010738-112010758:+] 0.5001 159 7 -17.31 -0.5941 MIMAT0009431 mmu-miR-1958 13531 Dub1 ugaauGACGAAGGUGAAAGGAu :| |||:| ||||||| uuccuUUCCUUUC-CUUUCCUu 2 18 464 484 [mm9:7:112010748-112010768:+] 0.5001 155 7 -16.20 -0.9413 MIMAT0009456 mmu-miR-1839-5p 13531 Dub1 guucUGGACAAGAUAGA-UGGAa | ||| || ||| |||| uuucAACUGCCCUUUCUAACCUc 2 19 775 797 [mm9:7:112011059-112011081:+] 0.5238 122 0 -12.27 -0.6411 MIMAT0009459 mmu-miR-1982* 13531 Dub1 ggaGGGGUCCUGGGA-GGGUu |:|:: ||||| |||| caaCUCUGCCACCCUACCCAc 2 18 569 589 [mm9:7:112010853-112010873:+] 0.5001 121 0 -20.96 -0.1114 MIMAT0011210 mmu-miR-2134 13531 Dub1 cgUGGGGCAAAGGGUU-CUg :||:| ||||||| || ggGCCUCUCUUCCCAAUGAu 2 18 654 673 [mm9:7:112010938-112010957:+] 0.5001 125 0 -19.45 -0.1647 MIMAT0011214 mmu-miR-2138 13531 Dub1 uaaggcGGUUCGGGCAAGGGAa |||| ||||||| gcuaucCCAA--AAGUUCCCUa 2 17 539 558 [mm9:7:112010823-112010842:+] 0.5001 141 7 -16.88 -1.0649 MIMAT0015642 mmu-miR-3471 13531 Dub1 uuacggaaugucAACCUAGAGu ||||||||| ggaacaagagguUUGGAUCUCu 2 11 58 79 [mm9:7:112010342-112010363:+] 0.5113 150 7 -14.47 -0.3551 MIMAT0015645 mmu-miR-3473 13531 Dub1 ccgacucGGUAGAGAGGu :| ||||||| ucucuucUCUUCUCUCCu 2 12 406 423 [mm9:7:112010690-112010707:+] 0.5001 143 7 -12.99 -0.5277 MIMAT0000142 mmu-miR-9 13531 Dub1 agUAUGUCGAUC-UAUUGGUUUCu ||| ||:| | | ||||||| auAUAAAGUUUGCAAUACCAAAGg 2 22 632 655 [mm9:7:112010916-112010939:+] 0.5001 160 7 -15.94 -0.2659 MIMAT0000151 mmu-miR-140 13531 Dub1 gaUGGUAUCCCAUUUUG-GUGAc ||| || | ||||| |||| agACCCUAAG--AAAACACACUg 2 21 711 731 [mm9:7:112010995-112011015:+] 0.5114 125 0 -14.57 -0.5958 MIMAT0000163 mmu-miR-153 13531 Dub1 cuAGU-GAAAACACUG-AUACGUu ||| ||| || || |||||| ggUCACCUUCUGCUACAUAUGCAg 2 21 683 706 [mm9:7:112010967-112010990:+] 0.5000 131 6 -16.91 -0.2522 MIMAT0000210 mmu-miR-181a 13531 Dub1 ugAGUGGCUGUCGCAACUUACAa || |:||: |: |||||||| acUCUCUGAUUGU-UUGAAUGUg 2 22 158 179 [mm9:7:112010442-112010463:+] 0.5205 163 7 -20.12 -0.5359 MIMAT0000214 mmu-miR-185 13531 Dub1 aguccuuGACGGAAAGAGAGGu || |: |||||||| cucuucuCUUCUCUUCUCUCCu 2 16 402 423 [mm9:7:112010686-112010707:+] 0.5001 155 7 -16.19 -0.5242 MIMAT0000215 mmu-miR-186 13531 Dub1 ucggguuuuccucuuAAGAAAc |||||| uuguuauuagauauuUUCUUUa 2 8 503 524 [mm9:7:112010787-112010808:+] 0.5001 120 6 -4.60 -0.3229 MIMAT0000224 mmu-miR-194 13531 Dub1 agGUGUACCUCAACGACAAUGu || || | || ||||||| guCAAAU-AAAUU-CUGUUACu 2 21 872 891 [mm9:7:112011156-112011175:+] 0.5289 148 7 -10.74 -1.2225 MIMAT0000229 mmu-miR-199a-5p 13531 Dub1 cuuguccaUCAGACUUGUGACCc | || ||||||| agagacuaAAUCACCACACUGGa 2 16 284 306 [mm9:7:112010568-112010590:+] 0.5014 143 7 -12.65 -0.5307 MIMAT0000229 mmu-miR-199a-5p 13531 Dub1 cuuguccaucagacuUGUGACCc ||||||| agacccuaagaaaacACACUGGa 2 9 711 733 [mm9:7:112010995-112011017:+] 0.5114 140 7 -12.32 -0.7166 MIMAT0000235 mmu-miR-202-3p 13531 Dub1 agaAGGGU----ACGCGAUAU-GGAGa ||||| | | ||||| |||| cuaUCCCAAAAGUUCCCUAUACCCUCc 2 20 540 566 [mm9:7:112010824-112010850:+] 0.5001 122 0 -17.44 -0.2626 MIMAT0000236 mmu-miR-203 13531 Dub1 gaucaccAGGAUUUGUAAAGUg |: | |||||||| auuuucuUUAUUUACAUUUCAa 2 16 515 536 [mm9:7:112010799-112010820:+] 0.5001 147 7 -9.97 -1.2471 MIMAT0000517 mmu-miR-192 13531 Dub1 ccgacaguuaaguAUCCAGUc ||||||| aaugauggccaacUAGGUCAc 2 9 668 688 [mm9:7:112010952-112010972:+] 0.5001 140 7 -11.09 -0.1069 MIMAT0000545 mmu-miR-98 13531 Dub1 uuGUU-AUGUUGAAUGA-UGGAGu ||| |:| ||| || ||||| uuCAACUGC-CCUUUCUAACCUCu 2 21 776 798 [mm9:7:112011060-112011082:+] 0.5238 121 0 -12.57 -0.4238 MIMAT0000667 mmu-miR-33 13531 Dub1 acguuACGUUGAUGU-UACGUg | | :||||| ||||| ucaccUUCUGCUACAUAUGCAg 2 17 685 706 [mm9:7:112010969-112010990:+] 0.5000 124 0 -11.38 -0.2545 MIMAT0000673 mmu-miR-181b 13531 Dub1 ugGGUGGCUGUCGUUACUUACAa :| |:||: |: ||||||| acUCUCUGAUUGU-UUGAAUGUg 2 22 158 179 [mm9:7:112010442-112010463:+] 0.5205 151 7 -17.79 -0.5359 MIMAT0000674 mmu-miR-181c 13531 Dub1 ugAGUGGCUGUCCAACUUACAa || |:||: | |||||||| acUCUCUGAUUGUUUGAAUGUg 2 21 158 179 [mm9:7:112010442-112010463:+] 0.5205 168 7 -19.72 -0.5359 MIMAT0000741 mmu-miR-377 13531 Dub1 uguuuucAACGGAAACACACUa || :: ||||||| gcucuuaUUCUUAGUGUGUGAu 2 16 837 858 [mm9:7:112011121-112011142:+] 0.5289 143 7 -12.62 -0.3813 MIMAT0001533 mmu-miR-448 13531 Dub1 uacccuguAGGAUGUAUACGUu | ||||||||||| ucaccuucUGCUACAUAUGCAg 2 15 685 706 [mm9:7:112010969-112010990:+] 0.5000 162 7 -18.36 -0.1549 MIMAT0003130 mmu-miR-486 13531 Dub1 gagcccCGUCGAGUCAUGUCCu | | |::||||||| ugcccaGGAUGUUGGUACAGGu 2 17 189 210 [mm9:7:112010473-112010494:+] 0.5028 148 7 -17.25 -0.2938 MIMAT0003889 mmu-miR-758 13531 Dub1 aucaccugguccAGUGUUu |||||| aauucuguuacuUCACAA- 2 8 880 897 [mm9:7:112011164-112011181:+] 0.5289 120 6 -4.37 -0.2365 MIMAT0003456 mmu-miR-495 13531 Dub1 uucuucacgugguacAAACAAa |||||| uuuuuaaauuuauuuUUUGUUa 2 8 487 508 [mm9:7:112010771-112010792:+] 0.5001 120 6 -2.13 -0.4316 MIMAT0004324 mmu-miR-181d 13531 Dub1 ugGGUGGCUGUUGUUACUUACAa :| |:||: :: ||||||| acUCUCUGAUUGU-UUGAAUGUg 2 22 158 179 [mm9:7:112010442-112010463:+] 0.5205 147 7 -17.18 -0.5394 MIMAT0004847 mmu-miR-882 13531 Dub1 ugauuacgcgauuGAGAGAGGa :||||||| cucuucucuucucUUCUCUCCu 2 10 402 423 [mm9:7:112010686-112010707:+] 0.5001 141 7 -15.18 -0.5207 MIMAT0005850 mmu-miR-1192 13531 Dub1 uuAAACCAGACAAACAAACAAa ||| :| || |||||| uuUUUAAAUUUAUUUUUUGUUa 2 21 487 508 [mm9:7:112010771-112010792:+] 0.5001 124 6 -3.06 -0.4316

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G074794 Usp17la Mus musculus 13531

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Dub1 mghv-miR-M1-9 beg:799 end:814 pic:3' TTTTTCCAGGTCCGTTTACACT 5'& |||| ||||||| &5' --------CCAGA-AAATGTG- 3' Dub1 mmu-miR-669g beg:83 end:100 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& ..|| . ||||||| &5' --------GGCAGGGACAATGC- 3' Dub1 mmu-miR-697 beg:184 end:202 pic:3' AGAGGTGTC-CTGGTCCTACAA 5'& || | |||||||||| &5' -------AGTGCCCAGGATGTT 3' Dub1 mmu-miR-448 beg:692 end:707 pic:3' TACCCTGTAGGATGTATACGTT 5'& |||||||||||. &5' ----------CTACATATGCAG 3' Dub1 mmu-miR-199bstar beg:276 end:306 pic:3' CTTGTCCA---TCAGATT------TGTGACCC 5'& .||| || |||| ||||||| &5' --GCAGCATAGAGACTAAATCACCACACTGG- 3' Dub1 mmu-miR-199bstar beg:713 end:733 pic:3' CTTGTCCATCAGATT------TGTGACCC 5'& |||| ||||||| &5' -----------CTAAGAAAACACACTGG- 3' Dub1 mmu-miR-1894-3p beg:408 end:429 pic:3' GAGGGAAGTG-GGAGAGGGAACG 5'& ||.|||| | |||||||. &5' -TCTCTTCTCTCCTCTCCT---- 3' Dub1 mmu-miR-423-5p beg:415 end:435 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& |||| ||||| |.|||| &5' ----TCTC-CTCTCCTCTCCTC- 3' Dub1 mmu-miR-709 beg:415 end:436 pic:3' AGGAGGAC-GGAGACGGAGG 5'& .||||| ||||| ||||. &5' -TCTCCTCTCCTCT-CCTCT 3' Dub1 mmu-miR-1892 beg:417 end:438 pic:3' TAGGAG-GGAGGGCAGGGGTTTA 5'& ||||| ||||.| ||.|| &5' -TCCTCTCCTCTCCTCTCC---- 3' Dub1 mmu-miR-483 beg:419 end:442 pic:3' GAGGGAAGAGAAGAGGGCAGAA 5'& |||.| |||| |||||. || &5' CTCTCCTCTCCTCTCCTCTC-- 3' Dub1 mmu-miR-1894-3p beg:419 end:439 pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& |||.| || .|||||||. &5' CTCTCCTC-TCCTCTCCT---- 3' Dub1 mmu-miR-423-5p beg:430 end:450 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& |||| ||||| |.|||| &5' ----TCTC-CTCTCCTCTCCTC- 3' Dub1 mmu-miR-1892 beg:432 end:453 pic:3' TAGGAG-GGAGGGCAGGGGTTTA 5'& ||||| ||||.| ||.|| &5' -TCCTCTCCTCTCCTCTCC---- 3' Dub1 mmu-miR-709 beg:430 end:451 pic:3' AGGAGGAC-GGAGACGGAGG 5'& .||||| ||||| ||||. &5' -TCTCCTCTCCTCT-CCTCT 3' Dub1 mmu-miR-483 beg:434 end:457 pic:3' GAGGGAAGAGAAGAGGGCAGAA 5'& |||.| |||| |||||. || &5' CTCTCCTCTCCTCTCCTCTC-- 3' Dub1 mmu-miR-1966 beg:444 end:466 pic:3' CTGAGAGAGGACTCGGTCGAGGGAA 5'& ||||||| || ||||.|| &5' ----CTCTCCTCT-CCT-CTCCTTT 3' Dub1 mmu-miR-1894-3p beg:444 end:468 pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& |||.| || .|||||||.|| | &5' CTCTCCTC-TCCTCTCCTTTCC 3' Dub1 mmu-miR-1894-3p beg:456 end:483 pic:3' GAGGGAAGT--GGGAGAGGGAACG 5'& ||||.||| .|||.|||.|| | &5' CTCCTTTCCTTTCCTTTCCTTTCC 3' Dub1 mmu-miR-483 beg:449 end:472 pic:3' GAGGGAAGAGAAGAGGGCAGAA 5'& |||.| |||| |.|||. || &5' CTCTCCTCTCCTTTCCTTTC-- 3' Dub1 mmu-miR-1966 beg:459 end:481 pic:3' CTGAGAGAGGACTCGGTCGAGGGAA 5'& ||.|||| || .|||.|| &5' ----CTTTCCTTT-CCT-TTCCTTT 3' Dub1 mmu-miR-1892 beg:462 end:484 pic:3' TAGG--AGGGAGGGCAGGGGTTTA 5'& ||| |||.|.|| |.||. &5' -TCCTTTCCTTTCCTTTCCT---- 3' Dub1 mmu-miR-483 beg:403 end:426 pic:3' GAGGGAAGAGAAGAGGGCAGAA 5'& ||.|||||||||||.| ||| &5' -TCTCTTCTCTTCTCTCCTCT- 3' Dub1 mmu-miR-1941-5p beg:418 end:444 pic:3' TTCGGAGACAT--GGTC-GTAGAGGGA 5'& ||||| || | |||||. &5' ---CCTCTCCTCTCCTCTCCTCTCCT- 3' Dub1 mmu-miR-1941-5p beg:438 end:465 pic:3' TTCGGAGACAT--GGTC-GTAGAGGGA 5'& ||||| || | |||||.| &5' ---CCTCTCCTCTCCTCTCCTCTCCTT 3' Dub1 mmu-miR-705 beg:582 end:601 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& ||||||| |||||||. &5' --CCCACCCA--CTCCCACT 3' Dub1 mmu-miR-1935 beg:561 end:579 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& ||| ||| ||||||| &5' -----TCCCCCAA-CTCTGCC- 3' Dub1 mmu-miR-1958 beg:456 end:474 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& || |||.| ||||||| &5' -----CTCCTTTC-CTTTCCT- 3' Dub1 mmu-miR-1958 beg:464 end:484 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& ||| |||.| ||||||| &5' -CTTTC--CTTTC-CTTTCCT- 3' Dub1 mmu-miR-3471 beg:64 end:79 pic:3' TTACGGAATGTC-AACCTAGAGT 5'& .| ||||||||| &5' ----------GGTTTGGATCTC- 3' Dub1 mmu-miR-744star beg:758 end:768 pic:3' TCCAACTCCAATCACCGTTGTC 5'& ||||||| &5' --------------GGCAACA- 3' Dub1 mmu-miR-486 beg:192 end:210 pic:3' GAGCCCCGTCGAGTCATGTCCT 5'& || | ||||||| &5' -----GGATG-TTGGTACAGG- 3' Dub1 mcmv-miR-m01-1 beg:339 end:364 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& |. ||| |||||.||| &5' CTTTTCTTTTCTTTTCTCTTCT 3' Dub1 mcmv-miR-m01-2 beg:344 end:368 pic:3' TGGCAAGGTTGGGCTAAGAGAAG 5'& |. |||. .|. |||||||| &5' -CTTTTCTTTTCTC-TTCTCTTC 3' Dub1 mcmv-miR-m01-2 beg:354 end:378 pic:3' TGGCAAGGTTGGGCTAAGAGAAG 5'& |. |||. .|. |||||||| &5' -CTCTTCTCTTCTC-TTCTCTTC 3' Dub1 mcmv-miR-m01-2 beg:364 end:388 pic:3' TGGCAAGGTTGGGCTAAGAGAAG 5'& |. |||. .|. |||||||| &5' -CTCTTCTCTTCTC-TTCTCTTC 3' Dub1 mcmv-miR-m01-2 beg:379 end:403 pic:3' TGGCAAGGTTGGGCTAAGAGAAG 5'& |. |||. .|. |||||||| &5' -CTCTTCTCTTCTC-TTCTCTTC 3' Dub1 mcmv-miR-M23-2 beg:551 end:571 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& || || ||| |||||| &5' CC-CTATACCCT--CCCCCA- 3' Dub1 mcmv-miR-m59-1 beg:27 end:46 pic:3' GACTGCCAGCTCCGTGACGATT 5'& || || |||||.|.| &5' ------GTGGACACACTGTTGA 3' Dub1 mmu-let-7b beg:83 end:103 pic:3' TTGGTGTGTTGGATG-ATGGAGT 5'& || .||. |.||||| &5' ---CAGGCAGGGACAATGCCTCA 3' Dub1 mmu-let-7c beg:85 end:103 pic:3' TTGGTATGTTGGATGATGGAGT 5'& || .|| |.||||| &5' ---CAGG-GACAA--TGCCTCA 3' Dub1 mmu-let-7g beg:86 end:103 pic:3' TTGACATGTTTGATGATGGAGT 5'& | | ..|| |.||||| &5' ----GCAGGGACAA-TGCCTCA 3' Dub1 mmu-let-7i beg:273 end:297 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& |.|||||.|.| |||| ||| &5' AGCAGCATAGAG-ACTAAATCA 3' Dub1 mmu-miR-1 beg:517 end:536 pic:3' TATGTATGAAG-AAATGTAAGGT 5'& |||. ||||||||.|| &5' -------CTTTATTTACATTTCA 3' Dub1 mmu-miR-125a-3p beg:20 end:41 pic:3' CCGAGGGTTCTTGGAGTGGACA 5'& ||||||.. |.|| |||. &5' GGCTCCTGTGGACA-CACT--- 3' Dub1 mmu-miR-135astar beg:602 end:625 pic:3' GCGGTGCCGAGGTT----AGGGATAT 5'& ||||| . |||||.|| &5' ------GGCTCTGGCATTTCCCTGTA 3' Dub1 mmu-miR-146a beg:849 end:870 pic:3' TTGGGTAC-CTTAA-GTCAAGAGT 5'& .|| || |||||||. &5' -----GTGTGATCAACAGTTCTT- 3' Dub1 mmu-miR-146b beg:848 end:870 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& ||. |.|| |||||||. &5' AGTGTGTGATCAACAGTTCTT- 3' Dub1 mmu-miR-149 beg:696 end:712 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& |.|.| |||.||| &5' ----------ATATGCAGCTAGA 3' Dub1 mmu-miR-181a beg:156 end:179 pic:3' TGAGTGGCTGTCGCAACTTACAA 5'& |||| |.||. |. |||||||| &5' ACTCTCTGATTGT-TTGAATGT- 3' Dub1 mmu-miR-181b beg:157 end:179 pic:3' TGGGTGGCTGTCGTTACTTACAA 5'& ||.| |.||. |. ||||||| &5' ACTCTCTGATTGTT-TGAATGT- 3' Dub1 mmu-miR-181c beg:157 end:179 pic:3' TGAGTGGCTGTCCAACTTACAA 5'& |||| |.||. | |||||||| &5' ACTCTCTGATTGTTTGAATGT- 3' Dub1 mmu-miR-181d beg:157 end:179 pic:3' TGGGTGGCTGTTGTTACTTACAA 5'& ||.| |.||. ||||||| &5' ACTCTCTGATTGTT-TGAATGT- 3' Dub1 mmu-miR-185 beg:301 end:323 pic:3' AGTCCTTGAC-GGAAAGAGAGGT 5'& |||.|| |.|||||.|.| &5' ---GGAGCTTTCTTTTCTTTTC- 3' Dub1 mmu-miR-185 beg:349 end:363 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& |.|||||||.| &5' ----------CTTTTCTCTTC- 3' Dub1 mmu-miR-185 beg:361 end:378 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& || | ||||||.| &5' -------CTTCTCTTCTCTTC- 3' Dub1 mmu-miR-185 beg:376 end:393 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& || | ||||||.| &5' -------CTTCTCTTCTCTTC- 3' Dub1 mmu-miR-192 beg:671 end:688 pic:3' CCGACAGTTAAGTATCCAGTC 5'& ||| ||| ||||||| &5' GGC---CAAC---TAGGTCA- 3' Dub1 mmu-miR-1929 beg:46 end:62 pic:3' GAGACGAGATATTTCA-GGATCTT 5'& ||.|| |||.||| &5' -----------AAGGTGCCTGGAA 3' Dub1 mmu-miR-1944 beg:265 end:288 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& .||| ||| |||||.|||| &5' ----GGAATCTGAG---CAGCATAGAG 3' Dub1 mmu-miR-1953 beg:299 end:315 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& ||| ||.|||||.. &5' -------CTG-GAGCTTTCTT- 3' Dub1 mmu-miR-1956 beg:144 end:166 pic:3' AGGCGACTGAGTC-GGGACCTGA 5'& |..||||||| | |.||| &5' TTTGCTGACTGACTCTCTG---- 3' Dub1 mmu-miR-1958 beg:304 end:324 pic:3' TGAATGACGAAGGT---GAAAGGAT 5'& ||||.| ||||.|| &5' -------GCTTTCTTTTCTTTTCT- 3' Dub1 mmu-miR-1962 beg:238 end:256 pic:3' TACACAGGGTCACGGTCGGAGA 5'& |||. | .||||||| &5' ----GTCTGAA---TAGCCTCT 3' Dub1 mmu-miR-2134 beg:32 end:53 pic:3' CGTGGGGCAAA-GGGTTCTG 5'& ||| |.||| ||||||. &5' -CACACTGTTGACCCAAGG- 3' Dub1 mmu-miR-2136 beg:569 end:589 pic:3' GTGTAGAGTCAGTT--GTGGGTC 5'& ||| | || .||||| &5' -----CTCTGCCACCCTACCCA- 3' Dub1 mmu-miR-2136 beg:1 end:15 pic:3' GTGTAGAGTCAGTT-GTGGGTC 5'& ||| |||||| &5' ----------TCACCCACCCA- 3' Dub1 mmu-miR-2141 beg:684 end:694 pic:3' TTGAAAAGACTGTGGAGGA 5'& |||||.|| &5' -----------CACCTTCT 3' Dub1 mmu-miR-214 beg:135 end:158 pic:3' TGACGGACAGACACGGACGACA 5'& .|||||||.| |||. ||| &5' -TTGCCTGTTTTTGCTGACTG- 3' Dub1 mmu-miR-215 beg:670 end:688 pic:3' CAGACA-GTTTAGTATCCAGTA 5'& || ||| ||||||| &5' ---TGGCCAAC---TAGGTCA- 3' Dub1 mmu-miR-215 beg:192 end:213 pic:3' CAGACAGTTTAGTATCCAGTA 5'& | ||| . ||||.| &5' GGATGTTGGTAC--AGGTTA- 3' Dub1 mmu-miR-223 beg:141 end:160 pic:3' ACCCCATAAACTGTTTGACTGT 5'& || |||| | .|||||| &5' ----GTTTTTG-CTGACTGAC- 3' Dub1 mmu-miR-24 beg:139 end:162 pic:3' GACAAGGACGACTTGACTCGGT 5'& |||||..||||| ||||| | &5' CTGTTTTTGCTG-ACTGACTC- 3' Dub1 mmu-miR-2861 beg:5 end:29 pic:3' GGCGGGCGGCG--GTCCGGGG 5'& || ||| |. |||||.|| &5' CCACCCACTCACACAGGCTCC 3' Dub1 mmu-miR-296-3p beg:559 end:576 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& ||||| ||||||.|| &5' ------CCTCC-CCCAACTCT- 3' Dub1 mmu-miR-302cstar beg:196 end:216 pic:3' CGTCCATTGGGGTACAATTTCG 5'& |. |||| || ||||||| &5' GTTGGTA----CAGGTTAAAG- 3' Dub1 mmu-miR-3072star beg:458 end:484 pic:3' GGAC-GGGAGGGAGCCCCAGGGA 5'& ||| ||.|.|||. |.||| &5' CCTTTCCTTTCCTTTCCTTTCCT 3' Dub1 mmu-miR-30b beg:623 end:646 pic:3' TCGACTCACATCCTA-CAAATGT 5'& |||.| ||||.|| &5' --CTGGGGCATATAAAGTTTGCA 3' Dub1 mmu-miR-31 beg:130 end:153 pic:3' GTCGAT-ACGGTCGTAGAACGGA 5'& .|| |||| |. |.||||. &5' -GGCCCTTGCCTGT-TTTTGCT- 3' Dub1 mmu-miR-32 beg:627 end:649 pic:3' ACGTTGAA-TCATTACACGTTAT 5'& ||| ||| ||||||| &5' -GCATATAAAGTT---TGCAATA 3' Dub1 mmu-miR-338-3p beg:190 end:204 pic:3' GTTGTTTTAGTGACTACGACCT 5'& || ||||.||| &5' ---------CAG-GATGTTGG- 3' Dub1 mmu-miR-344 beg:671 end:688 pic:3' TGTCAGTCCGAAACCGATCTAGT 5'& ||| ||||.||| &5' -------GGCCAA--CTAGGTCA 3' Dub1 mmu-miR-3473 beg:651 end:666 pic:3' CCGACTCGGTAGAGAGGT 5'& |.||| |||||.| &5' ----GGGCC-TCTCTTC- 3' Dub1 mmu-miR-3473 beg:780 end:793 pic:3' CCGACTCGGTAGAGAGGT 5'& ||| ||.||.| &5' ------GCC--CTTTCTA 3' Dub1 mmu-miR-378 beg:685 end:707 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& ||||||| || || | ||| &5' CCTTCTG-CTACATATGCAG- 3' Dub1 mmu-miR-380-3p beg:684 end:702 pic:3' TTCTACACCTGGT--ATGATGTAT 5'& ||| |.||||||| &5' ---------ACCTTCTGCTACATA 3' Dub1 mmu-miR-450a-3p beg:698 end:720 pic:3' TACTTACGTT--TCGTAGGGGTTA 5'& |||||. || |||.|| &5' ----ATGCAGCTAGAGACCCTAA- 3' Dub1 mmu-miR-450b-3p beg:653 end:671 pic:3' TACGTACGTTTTACAAGGGTTA 5'& || |||||||| &5' ------GCCTCTC-TTCCCAAT 3' Dub1 mmu-miR-483 beg:353 end:377 pic:3' GAGGGAAGAGAAGAGGGCAGAA 5'& ||.|||||||||||. |||| &5' -TCTCTTCTCTTCTCTTCTCTT 3' Dub1 mmu-miR-483 beg:305 end:330 pic:3' GAGGGAAGAGAAGAGGGCAGAA 5'& || |||.||||.||. |||| &5' CTTTCTTTTCTTTTCTTTTCTT 3' Dub1 mmu-miR-483 beg:373 end:397 pic:3' GAGGGAAGAGAAGAGGGCAGAA 5'& ||.|||||||||||. |||| &5' -TCTCTTCTCTTCTCTTCTCTT 3' Dub1 mmu-miR-488 beg:763 end:781 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& |||| ||.|||||| &5' ---CAAGTT---GCTTTTCAA 3' Dub1 mmu-miR-509-5p beg:735 end:752 pic:3' TACTAACGGTGTAAGACCTCAT 5'& ||| |.|||||| &5' ----TTGAGG---TTTGGAGT- 3' Dub1 mmu-miR-542-3p beg:869 end:891 pic:3' AAAGTCAATAGTT------AGACAGTGT 5'& .|||| |||||.|| &5' --------GTCAAATAAATTCTGTTAC- 3' Dub1 mmu-miR-542-5p beg:145 end:167 pic:3' AGC-ACTGTACTACTAGGGGCTC 5'& |.| |||| ||| ||.|.|| &5' TTGCTGAC-TGAC--TCTCTGA- 3' Dub1 mmu-miR-543 beg:183 end:202 pic:3' TTCTTCACGTGGCGCTTACAAA 5'& |||||| || |.||||| &5' ---AAGTGC-CCA-GGATGTT- 3' Dub1 mmu-miR-582-3p beg:844 end:865 pic:3' AACCCAAGTCA-ACA--AGTTGTCC 5'& |.||| ||| ||||||| &5' ------TTAGTGTGTGATCAACAG- 3' Dub1 mmu-miR-665 beg:592 end:607 pic:3' TCCCTGGAGTCGGAGGACCA 5'& || || |.||.||| &5' -----CC-CA-CTTCTTGG- 3' Dub1 mmu-miR-676star beg:812 end:831 pic:3' CGTTCAGGATTCCAACATCTCA 5'& |||.| ||||||| &5' ---AGTTCACCC--TGTAGAG- 3' Dub1 mmu-miR-677 beg:289 end:307 pic:3' AGTCTTCGATTAGTA--GTGACTT 5'& ||||| |||||.| &5' ---------AATCACCACACTGGA 3' Dub1 mmu-miR-680 beg:821 end:841 pic:3' GGGGGTACAG-TC-GTCTACGGG 5'& || ||| || .||||||.| &5' ---CC-TGTAGAGATAGATGCTC 3' Dub1 mmu-miR-687 beg:186 end:200 pic:3' AGTAACGACGTAAGGTCCTATC 5'& ||| |||||||. &5' -------TGC---CCAGGATG- 3' Dub1 mmu-miR-708 beg:8 end:30 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& |||| || |.|||||| &5' CCCA-CTCACAC--AGGCTCCT- 3' Dub1 mmu-miR-709 beg:440 end:461 pic:3' AGGAGGAC-GGAGACGGAGG 5'& .||||| ||||| ||||. &5' -TCTCCTCTCCTCT-CCTCT 3' Dub1 mmu-miR-743b-5p beg:231 end:250 pic:3' ACTACCTGTGGTCAGACTTGT 5'& ||| . .|||||||.| &5' ----GGAGGA-GGTCTGAATA 3' Dub1 mmu-miR-743b-5p beg:263 end:280 pic:3' ACTACCTGTGGTCAGACTTGT 5'& ||||| |||||.|| &5' --ATGGAA-----TCTGAGCA 3' Dub1 mmu-miR-871 beg:231 end:250 pic:3' GTACTGACCGTGATTAGACTTAT 5'& || ..|||||||| &5' -------GGAGGAGGTCTGAATA 3' Dub1 mmu-miR-878-5p beg:667 end:686 pic:3' ACAGAACTGTAGGTTGATCTAT 5'& |||. ||||||||.| &5' -----TGATGGCCAACTAGGT- 3' Dub1 mmu-miR-882 beg:412 end:424 pic:3' TGATTACGCGATTGAGAGAGGA 5'& .|||||||| &5' -------------TTCTCTCCT 3' Dub1 mmu-miR-882 beg:352 end:364 pic:3' TGATTACGCGATTGAGAGAGGA 5'& .|||||.|| &5' -------------TTCTCTTCT 3' Dub1 mmu-miR-9 beg:635 end:656 pic:3' AGTATGTCGATCTAT-TGGTTTCT 5'& ||.| |||||||. &5' ------AGTTTGCAATACCAAAGG 3' Dub1 mmu-miR-92b beg:626 end:649 pic:3' CCTCCGGCCCTG-CTCACGTTAT 5'& |.||| | ||||||| &5' -GGGGCATATAAAGTTTGCAATA 3' Dub1 mmu-miR-185 beg:406 end:423 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& || | |||||||| &5' -------CTTCTCTTCTCTCC- 3' Dub1 mcmv-miR-m01-2 beg:394 end:418 pic:3' TGGCAAGGTTGGGCTAAGAGAAG 5'& |. |||. .|. |||||||| &5' -CTCTTCTCTTCTC-TTCTCTTC 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp17la RAID00077700 mmu-miR-181c-5p miRNA MIMAT0000674 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00126394 mmu-miR-5118 miRNA MIMAT0020626 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00220923 mmu-miR-9-5p miRNA MIMAT0000142 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00230998 mmu-miR-186-5p miRNA MIMAT0000215 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00295471 mmu-miR-202-3p miRNA MIMAT0000235 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00337689 mmu-miR-7027-5p miRNA MIMAT0027958 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00421908 mmu-miR-140-5p miRNA MIMAT0000151 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00593320 mmu-miR-7213-3p miRNA MIMAT0028395 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00623573 mmu-miR-8113 miRNA MIMAT0031419 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00631218 mmu-miR-7010-5p miRNA MIMAT0027924 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00692755 mmu-miR-181a-5p miRNA MIMAT0000210 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00728739 mmu-miR-705 miRNA MIMAT0003495 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00811503 mmu-miR-192-5p miRNA MIMAT0000517 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00893536 mmu-miR-3090-5p miRNA MIMAT0014901 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID00915047 mmu-miR-199a-5p miRNA MIMAT0000229 Usp17la mRNA 13531 Prediction 0.2202 Usp17la RAID00975433 mmu-miR-98-5p miRNA MIMAT0000545 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID01061725 mmu-miR-181b-5p miRNA MIMAT0000673 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID01264855 mmu-miR-6957-5p miRNA MIMAT0027814 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID01265161 mmu-miR-185-5p miRNA MIMAT0000214 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID01433196 mmu-miR-7086-5p miRNA MIMAT0028078 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID01441315 mmu-miR-448-3p miRNA MIMAT0001533 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID01476562 mmu-miR-7677-5p miRNA MIMAT0029868 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID01493537 mmu-miR-7012-5p miRNA MIMAT0027928 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID01532310 mmu-miR-882 miRNA MIMAT0004847 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID01533680 mmu-miR-199b-5p miRNA MIMAT0000672 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID01541675 mmu-miR-486a-5p miRNA MIMAT0003130 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID01633984 mmu-miR-181d-5p miRNA MIMAT0004324 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID02415753 mmu-miR-758-3p miRNA MIMAT0003889 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID02425112 mmu-miR-495-3p miRNA MIMAT0003456 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID02524969 mmu-miR-33-5p miRNA MIMAT0000667 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID02649824 mmu-miR-1192 miRNA MIMAT0005850 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID02761883 mmu-miR-7683-3p miRNA MIMAT0029887 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID02828841 mmu-miR-7064-3p miRNA MIMAT0028033 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID03120532 mmu-miR-377-3p miRNA MIMAT0000741 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID03124637 mmu-miR-194-5p miRNA MIMAT0000224 Usp17la mRNA 13531 Prediction 0.2202 Usp17la RAID03377642 mmu-miR-203-3p miRNA MIMAT0000236 Usp17la mRNA 13531 Prediction 0.2202 Usp17la RAID03411210 mmu-miR-8119 miRNA MIMAT0031425 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID03472557 mmu-miR-153-3p miRNA MIMAT0000163 Usp17la mRNA 13531 Prediction 0.1828 Usp17la RAID03630279 mmu-miR-7057-5p miRNA MIMAT0028018 Usp17la mRNA 13531 Prediction 0.1828