DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004527 mmu-miR-124* 69459 Ubl7 uaguuccaggcgacACUUGUGc ||||||| --acuucuuguaccUGAACACc 2 9 1 20 [mm9:9:57777658-57777677:+] 0.6665 140 7 -8.77 -0.2045 MIMAT0004635 mmu-miR-92a* 69459 Ubl7 cauuacGGUGGUUAGGGGUGGa ||||| | ||||||| gauuccCCACCCAACCCCACCc 2 17 74 95 [mm9:9:57777731-57777752:+] 0.6127 164 7 -25.42 -0.8145 MIMAT0004635 mmu-miR-92a* 69459 Ubl7 cauuACGGUGGUU--AGGGGUGGa |||: |:|: |||||||| aaguUGCUUCUAGAUUCCCCACCc 2 19 62 85 [mm9:9:57777719-57777742:+] 0.6127 157 7 -22.83 -0.8298 MIMAT0004653 mmu-miR-342-5p 69459 Ubl7 gaguuagugucuaucGUGGGGa |||||| uuccccacccaacccCACCCCa 2 8 76 97 [mm9:9:57777733-57777754:+] 0.6127 120 6 -13.20 -0.1112 MIMAT0003376 mmu-miR-302c 69459 Ubl7 gguGACUUUGUACCUUCGUGAa ||| :|| |||||||| uucCUG--GCA-AGAAGCACUu 2 20 40 58 [mm9:9:57777697-57777715:+] 0.6127 146 7 -17.13 -0.3012 MIMAT0004856 mmu-miR-105 69459 Ubl7 ugguguucguagacUCGUGAACc |||||||| uguuccuggcaagaAGCACUUGu 2 10 38 60 [mm9:9:57777695-57777717:+] 0.6127 145 7 -16.60 -0.6701 MIMAT0009405 mmu-miR-1941-5p 69459 Ubl7 uucGGAGACAUGGUCGUA-GAGGGa || | ||:|| :|| ||||| accCCAAUAUAUCA-UAUGCUCCCc 2 22 92 115 [mm9:9:57777749-57777772:+] 0.6127 123 0 -15.72 -1.0413 MIMAT0000150 mmu-miR-138 69459 Ubl7 gccGGACUAAGUGUUGUGG-UCGa |:|| | |||||| ||| cuuCUUGUACCUGAACACCUAGCa 2 21 2 25 [mm9:9:57777659-57777682:+] 0.6665 120 0 -16.96 -0.6246 MIMAT0000368 mmu-miR-291a-3p 69459 Ubl7 cguguguuucacCUUCGUGAAa ||||||||| uguuccuggcaaGAAGCACUUg 2 11 38 59 [mm9:9:57777695-57777716:+] 0.6127 150 7 -13.32 -0.4547 MIMAT0000372 mmu-miR-294 69459 Ubl7 uguguguuuuccCUUCGUGAAa ||||||||| uguuccuggcaaGAAGCACUUg 2 11 38 59 [mm9:9:57777695-57777716:+] 0.6127 150 7 -12.51 -0.4580 MIMAT0000373 mmu-miR-295 69459 Ubl7 ucUGAGUUUUCAUCAUCGUGAAa ::|| :: || ||||||| cuGUUCCUGGCAAGAAGCACUUg 2 22 37 59 [mm9:9:57777694-57777716:+] 0.5786 149 7 -11.60 -0.3929 MIMAT0000380 mmu-miR-302a 69459 Ubl7 agugguuuuguacCUUCGUGAAu ||||||||| cuguuccuggcaaGAAGCACUUg 2 11 37 59 [mm9:9:57777694-57777716:+] 0.5786 150 7 -18.29 -0.3990 MIMAT0003374 mmu-miR-302b 69459 Ubl7 gaugauuuuguacCUUCGUGAAu ||||||||| cuguuccuggcaaGAAGCACUUg 2 11 37 59 [mm9:9:57777694-57777716:+] 0.5786 150 7 -18.07 -0.3990 MIMAT0003377 mmu-miR-302d 69459 Ubl7 ugugaGUUUGUACCUUCGUGAAu | ::|| ||||||||| uguucCUGGCA-AGAAGCACUUg 2 19 38 59 [mm9:9:57777695-57777716:+] 0.6127 152 7 -17.41 -0.4613 MIMAT0003486 mmu-miR-491 69459 Ubl7 ggaguaccuucCCAAGGGGUGa | |||||||| aguugcuucuaGAUUCCCCACc 2 12 63 84 [mm9:9:57777720-57777741:+] 0.6127 147 7 -18.74 -0.8774 MIMAT0004936 mmu-miR-873 69459 Ubl7 ucCUCUGAGUGUUCAAGGACg |||:|| ||||||| caGAGGCU-----GUUCCUGg 2 20 31 46 [mm9:9:57777688-57777703:+] 0.5786 141 7 -18.03 -0.3486

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055273 Ubl7 Mus musculus 69459

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ubl7 mmu-miR-302c beg:40 end:59 pic:3' GGTGACTTTGTACCTTCGTGAA 5'& ||| .|| ||||||||| &5' ---CTG--GCAA-GAAGCACTT 3' Ubl7 mmu-miR-302b beg:42 end:60 pic:3' GATGATTTTGTACCTTCGTGAAT 5'& ..|| |||||||||. &5' -------GGCAA-GAAGCACTTG 3' Ubl7 mmu-miR-294 beg:43 end:59 pic:3' TGTGTGTTTTCCCTTCGTGAAA 5'& .||| ||||||||| &5' ----GCAA----GAAGCACTT- 3' Ubl7 mmu-miR-92astar beg:77 end:95 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& ||||| ||||||| &5' ------CCACCCAACCCCACC- 3' Ubl7 mmu-miR-873 beg:30 end:46 pic:3' TCCTCTGAGTGTTCAAGGACG 5'& |||.|| ||||||| &5' --GAGGCT-----GTTCCTG- 3' Ubl7 mcmv-miR-M23-2 beg:63 end:83 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& .|||| || .||||| &5' -TGCTTCTA-GAT-TCCCCA- 3' Ubl7 mmu-miR-105 beg:39 end:60 pic:3' TGGTGTTCGTAGACTCGTGAACC 5'& || .||| |||||||| &5' -CCT--GGCAAGA-AGCACTTG- 3' Ubl7 mmu-miR-124star beg:1 end:20 pic:3' TAGTTCCAGGCGACACTTGTGC 5'& || | || ||||||| &5' -TCTTGTACC----TGAACAC- 3' Ubl7 mmu-miR-1957 beg:100 end:117 pic:3' CAGTATACGAGATGGTGAC 5'& |||||||||| || .|| &5' -TCATATGCTC--CCCTTG 3' Ubl7 mmu-miR-302a beg:39 end:60 pic:3' AGTGGTTTTGTACCTTCGTGAAT 5'& || ..|| |||||||||. &5' ---CCT-GGCAA-GAAGCACTTG 3' Ubl7 mmu-miR-302d beg:37 end:60 pic:3' TGTGAGT-TTGTACCTTCGTGAAT 5'& .|| ..|| |||||||||. &5' ---TTCCTGGCAA-GAAGCACTTG 3' Ubl7 mmu-miR-3475 beg:54 end:76 pic:3' AAGTTTGGTAC----ACGGAGGTCT 5'& . || |||.||.||| &5' ------TTGTGAAGTTGCTTCTAGA 3' Ubl7 mmu-miR-544 beg:20 end:36 pic:3' CTCGAACGATTTTTACGTCTTA 5'& || ||| ||||||. &5' ------GC-AAAT-TGCAGAG- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubl7 RAID00054499 mmu-miR-6986-5p miRNA MIMAT0027874 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID00917618 mmu-miR-302a-3p miRNA MIMAT0000380 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID01015414 mmu-miR-153-3p miRNA MIMAT0000163 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID01164252 mmu-miR-92a-2-5p miRNA MIMAT0004635 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID01214420 mmu-miR-294-3p miRNA MIMAT0000372 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID01284629 mmu-miR-1306-5p miRNA MIMAT0019136 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID01293725 mmu-miR-140-3p miRNA MIMAT0000152 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID01374683 mmu-miR-451b miRNA MIMAT0025178 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID01902503 mmu-miR-448-3p miRNA MIMAT0001533 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID02296441 mmu-miR-6951-3p miRNA MIMAT0027803 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID02344922 mmu-miR-295-3p miRNA MIMAT0000373 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID02424283 mmu-miR-491-5p miRNA MIMAT0003486 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID02441157 mmu-miR-302b-3p miRNA MIMAT0003374 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID02475443 mmu-miR-291a-3p miRNA MIMAT0000368 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID02478536 mmu-miR-138-5p miRNA MIMAT0000150 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID02566426 mmu-miR-384-3p miRNA MIMAT0001076 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID02982102 mmu-miR-6934-3p miRNA MIMAT0027769 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID03250916 mmu-miR-302d-3p miRNA MIMAT0003377 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID03527329 mmu-miR-873a-5p miRNA MIMAT0004936 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID03706558 mmu-miR-5129-3p miRNA MIMAT0022987 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID04029990 mmu-miR-7116-3p miRNA MIMAT0028130 Ubl7 mRNA 69459 Prediction 0.1828 Ubl7 RAID04054524 mmu-miR-6931-5p miRNA MIMAT0027762 Ubl7 mRNA 69459 Prediction 0.1828