DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT008206 mmu-miR-541-5p Mus musculus Rnf181 66510 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000218 mmu-miR-24-1* 66510 Rnf181 ugACUAUAGUCGAG-UCAU-CCGUg | | : |||| | |||| |||| ggUCAAGCCAGCCCAAGUAGGGCAa 2 22 486 510 [mm9:6:72310067-72310091:-] 0.4902 124 0 -15.97 -0.2059 MIMAT0004547 mmu-miR-203* 66510 Rnf181 acAACUUGACAG-UUCUU-GGUGa ||| :||||| :||| |||| ccUUG-GCUGUCUUGGAACCCACu 2 21 584 606 [mm9:6:72309971-72309993:-] 0.4848 125 0 -20.15 -0.4296 MIMAT0004547 mmu-miR-203* 66510 Rnf181 acaacUUGACAGUUCUUG-GUGa :|:| || ||||| ||| uccguGAUUCUCCAGAACACACu 2 18 795 817 [mm9:6:72309760-72309782:-] 0.5362 125 0 -13.67 -0.2054 MIMAT0000374 mmu-miR-296-5p 66510 Rnf181 uguccuaaCUCCCCCCCGGGa | || ||||||| gacucuggGUGGUGGGGCCCu 2 14 213 233 [mm9:6:72310344-72310364:-] 0.5408 149 7 -26.76 -0.2262 MIMAT0000376 mmu-miR-298 66510 Rnf181 cccuucUUGUCGGGAGGAGACGg :|:| |:: ||||||| cucucuGAUACCUUCCCUCUGCa 2 18 28 50 [mm9:6:72310527-72310549:-] 0.5544 153 7 -19.69 -0.6347 MIMAT0004578 mmu-miR-300* 66510 Rnf181 uguuuccuAUUGGAGAGAAGUu ||: ||||||| aggcuguuUAGAGACUCUUCAa 2 15 510 531 [mm9:6:72310046-72310067:-] 0.4771 142 7 -13.75 -0.7890 MIMAT0005440 mmu-miR-24-2* 66510 Rnf181 ugacaaaGUCGAG-UCAU-CCGUg |||| | |||| |||| gucaagcCAGCCCAAGUAGGGCAa 2 16 487 510 [mm9:6:72310067-72310090:-] 0.4902 122 0 -15.97 -0.2059 MIMAT0000650 mmu-miR-17* 66510 Rnf181 gauguucacggGAGUGACGUCa | |||||||| auucuccagaaCACACUGCAGa 2 12 801 822 [mm9:6:72309755-72309776:-] 0.5362 147 7 -17.02 -0.5283 MIMAT0000744 mmu-miR-380-5p 66510 Rnf181 gcguacaAGAUACCAGUU-GGUa || | |||||| ||| caaggaaUCAAAGGUCAAGCCAg 2 16 474 496 [mm9:6:72310081-72310103:-] 0.5032 123 0 -12.31 -0.2135 MIMAT0004760 mmu-miR-470* 66510 Rnf181 agAAGAGUCUU--UCC--AUGACCAa ||| ||| : :|| ||||||| ucUUCCCAGUGUUGGGAUUACUGGUa 2 21 652 677 [mm9:6:72309900-72309925:-] 0.4854 150 7 -20.93 -0.5587 MIMAT0003127 mmu-miR-484 66510 Rnf181 uagcccucCCCUGACUCGGACu | | | ||||||| gucaaacuGUGUCAGAGCCUGg 2 15 272 293 [mm9:6:72310284-72310305:-] 0.5408 146 7 -14.86 -0.3417 MIMAT0004788 mmu-miR-20b* 66510 Rnf181 gaucuucacgaGUGUGACGUCa |||||||||| auucuccagaaCACACUGCAGa 2 12 801 822 [mm9:6:72309755-72309776:-] 0.5362 155 7 -19.51 -0.5283 MIMAT0003376 mmu-miR-302c 66510 Rnf181 ggUGACUUUGUACCUUCGUGAa |: || |:| |||:||| uaAUAGAUAUAAAAAAGUACUa 2 21 843 864 [mm9:6:72309713-72309734:-] 0.6211 136 0 -8.64 -0.2607 MIMAT0003734 mmu-miR-667 66510 Rnf181 gaacccgaccCACCGUCCACAGu || ||||||| ccagaaagauGUCAAAGGUGUCa 2 14 146 168 [mm9:6:72310409-72310431:-] 0.5408 141 7 -13.99 -0.8947 MIMAT0003892 mmu-miR-762 66510 Rnf181 cgagacagggccggGGUCGGGg ||||||| aaucaaaggucaagCCAGCCCa 2 9 479 500 [mm9:6:72310077-72310098:-] 0.4902 140 7 -21.65 -0.4672 MIMAT0003735 mmu-miR-672 66510 Rnf181 agUGUGUGUC--AUGUGGUUGGAGu || | :|| | :: ||||||| ucACUCUUAGUUUCUGGCAACCUCa 2 22 714 738 [mm9:6:72309839-72309863:-] 0.5321 148 7 -22.09 -0.6585 MIMAT0004823 mmu-miR-666-3p 66510 Rnf181 ucguccgcuaGUGCGACGUCGg ||| ||||||| uuucuuuaccCACCCUGCAGCu 2 13 68 89 [mm9:6:72310488-72310509:-] 0.5950 152 7 -16.83 -0.1832 MIMAT0003897 mmu-miR-759 66510 Rnf181 caguuuuaacAAACGUGAGACg | ||||||||| auaccuucccUCUGCACUCUGa 2 13 35 56 [mm9:6:72310521-72310542:-] 0.5544 152 7 -15.55 -0.7675 MIMAT0003898 mmu-miR-760 66510 Rnf181 aggggUGUCUGGGUCUCGGc || | :||||||| gucaaACUGUGUCAGAGCCu 2 16 272 291 [mm9:6:72310286-72310305:-] 0.5408 147 7 -18.84 -0.4114 MIMAT0003493 mmu-miR-703 66510 Rnf181 aagaaaggaaGACUUCCAAAa :| ||||||| cucugaaucaUUAAAGGUUUc 2 12 51 71 [mm9:6:72310506-72310526:-] 0.6160 143 7 -8.70 -0.8030 MIMAT0003498 mmu-miR-708* 66510 Rnf181 gaucuucgagugucAGAUCAAc ||||||| ccacuccggaaaucUCUAGUUa 2 9 337 358 [mm9:6:72310219-72310240:-] 0.5039 140 7 -12.82 -0.5118 MIMAT0003498 mmu-miR-708* 66510 Rnf181 gaUCUUCGAGUGUCAG-AUCAAc :| | || || || ||||| auGGCAUCUGUCACUCUUAGUUu 2 21 704 726 [mm9:6:72309851-72309873:-] 0.5281 120 0 -9.89 -0.2269 MIMAT0003499 mmu-miR-709 66510 Rnf181 aggaGGACGGAGACG-GAGg |:| ||||||| ||| auacCUUCCCUCUGCACUCu 2 16 35 54 [mm9:6:72310523-72310542:-] 0.5544 127 0 -25.53 -0.4732 MIMAT0003711 mmu-miR-652 66510 Rnf181 guGUUGGGAUCACCGCGGUAa || :|||: |||||||| ccCACUCCUGUAGGCGCCAUu 2 20 451 471 [mm9:6:72310106-72310126:-] 0.5032 163 7 -25.75 -0.4843 MIMAT0004238 mmu-miR-743a 66510 Rnf181 agaUGAGUCGA-AC-CAC-AGAAAg :||::| | || ||| ||||| aggGCUUGGGUCUGAGUGUUCUUUu 2 20 243 267 [mm9:6:72310310-72310334:-] 0.5408 121 0 -15.34 -0.3858 MIMAT0004840 mmu-miR-743b-3p 66510 Rnf181 agauAAGUCGUACU-AC-AGAAAg || :|: ||| || ||||| gggcUUGGGUCUGAGUGUUCUUUu 2 19 244 267 [mm9:6:72310310-72310333:-] 0.5408 121 0 -8.51 -0.3858 MIMAT0004841 mmu-miR-871 66510 Rnf181 guacuGACCGUGAU-UAGACUUAu || |: |: |||||||| acaccCUUACGAUGUAUCUGAAUg 2 19 683 706 [mm9:6:72309871-72309894:-] 0.5068 149 7 -12.96 -0.4010 MIMAT0004841 mmu-miR-871 66510 Rnf181 guacuGACCGUGAUUAGACUUAu || |||| ||||||| ucccuCU-GCAC---UCUGAAUc 2 19 41 59 [mm9:6:72310518-72310536:-] 0.5544 144 7 -12.79 -0.4444 MIMAT0004867 mmu-miR-327 66510 Rnf181 uaGGAGUACG-GGGAGUUCa ::|| || ||||||| agUUUCUGGCAACCUCAAGa 2 18 722 741 [mm9:6:72309836-72309855:-] 0.5321 144 7 -16.44 -0.8578 MIMAT0004870 mmu-miR-453 66510 Rnf181 acGUUCGAGUGAUACUCCGUUGGa || ||:| | | ||||||| guCACUCUUAGUUUCUGGCAACCu 2 23 713 736 [mm9:6:72309841-72309864:-] 0.5321 158 7 -18.56 -0.7481 MIMAT0004934 mmu-miR-872 66510 Rnf181 ggaCUUGAUUGUUC-AUUGGAa ||| | | || |||||| ccgGAAAUCUCUAGUUAACCUu 2 19 342 363 [mm9:6:72310214-72310235:-] 0.5039 122 6 -12.11 -0.2204 MIMAT0005848 mmu-miR-466j 66510 Rnf181 aaugUGUGUACGUGUACGU-GUGu |:| || || |||| ||| acugAUAAAUUAACUUGCACCACc 2 20 313 336 [mm9:6:72310241-72310264:-] 0.5224 123 0 -9.99 -0.6219 MIMAT0005851 mmu-miR-1193 66510 Rnf181 cuaucauuuugccCACUGGAu ||||||| uuucauucacuauGUGACCUu 2 9 567 587 [mm9:6:72309990-72310010:-] 0.4848 140 7 -11.14 -0.4061 MIMAT0007872 mmu-miR-1906 66510 Rnf181 ucgggacGGA-GUCCGACGACGu ||| || ||||||| uccgaauCCUCCACCCUGCUGCu 2 16 121 143 [mm9:6:72310434-72310456:-] 0.5408 150 7 -20.57 -0.2574 MIMAT0007875 mmu-miR-1898 66510 Rnf181 cuAGGGGACACUUGGAAC--UGGa ||:|: || ||||||| ||| aaUCUCUAGUUAACCUUGGAACCu 2 21 347 370 [mm9:6:72310207-72310230:-] 0.5039 124 0 -21.98 -0.4965 MIMAT0007876 mmu-miR-1907 66510 Rnf181 ugGAGGUCUAGGA-----GACGACGAg :|||: ||||| |||||||| ccUUCCGAAUCCUCCACCCUGCUGCUa 2 21 118 144 [mm9:6:72310433-72310459:-] 0.5408 159 7 -29.47 -0.4681 MIMAT0009399 mmu-miR-1935 66510 Rnf181 ucUCUAGGCGGU--CGGAGACGGa ||: |:|| | |||||||| ccAGG-CUGCAAUUCCCUCUGCCa 2 21 183 205 [mm9:6:72310372-72310394:-] 0.5408 149 7 -22.28 -0.1945 MIMAT0009404 mmu-miR-1940 66510 Rnf181 uugacgagGUGGAAGAGUCAGGAGGUa | ||||| | ||||||| agcaggggCUCCUUCCGAAUCCUCCAc 2 20 108 134 [mm9:6:72310443-72310469:-] 0.5574 163 7 -23.30 -0.2065 MIMAT0009431 mmu-miR-1958 66510 Rnf181 ugaaugacgaagguGAAAGGAu ||||||| gcaaccucaagaauCUUUCCUg 2 9 730 751 [mm9:6:72309826-72309847:-] 0.5321 140 7 -12.25 -0.2677 MIMAT0009435 mmu-miR-1962 66510 Rnf181 uacaCAGGGUCACG-GUCGGAGa | |: || || ||||||| ccagGGCUGAGCGCUCAGCCUCu 2 19 9 31 [mm9:6:72310546-72310568:-] 0.4951 153 7 -22.80 -0.8118 MIMAT0009439 mmu-miR-1966 66510 Rnf181 cuGAGAGAGGACUCGGUCGAG-GGAa | || | : || | :|||| ||| ccCACUAUAUAGACCAGGCUCGCCUu 2 24 601 626 [mm9:6:72309951-72309976:-] 0.4848 123 0 -17.70 -0.1874 MIMAT0009441 mmu-miR-1968 66510 Rnf181 ucAGGUGGUAGGAAUUGUCGACGu |::||| || | :||||||| ucUUUACCCACCCU-GCAGCUGCa 2 23 70 92 [mm9:6:72310485-72310507:-] 0.5950 160 7 -24.08 -0.2929 MIMAT0009441 mmu-miR-1968 66510 Rnf181 ucaggugguaggaaUUGUCGACGu ::||||||| --------------GGCAGCUGCc 2 11 1 10 [mm9:6:72310567-72310576:-] 0.4973 142 7 -12.14 -0.2937 MIMAT0009458 mmu-miR-1981 66510 Rnf181 cggugCAGAUUCGGGUCGGAA-AUg | | |:||:| ||||| || auauaGACCAGGCUC-GCCUUGUAc 2 20 607 630 [mm9:6:72309947-72309970:-] 0.4848 121 0 -17.26 -0.1765 MIMAT0011221 mmu-miR-2145 66510 Rnf181 uugguccgGGCUGGGACGa || ||||||| uuucuuuaCCCACCCUGCa 2 12 68 86 [mm9:6:72310491-72310509:-] 0.5950 147 7 -19.72 -0.2675 MIMAT0011222 mmu-miR-2146 66510 Rnf181 guguaccuugggAAGAGGUg ||||||| gacccuccgugaUUCUCCAg 2 9 790 809 [mm9:6:72309768-72309787:-] 0.5362 140 7 -14.79 -0.2294 MIMAT0000124 mmu-miR-15b 66510 Rnf181 acauuugguacuacACGACGAu ||||||| cgaauccuccacccUGCUGCUa 2 9 123 144 [mm9:6:72310433-72310454:-] 0.5408 140 7 -14.56 -0.4581 MIMAT0000134 mmu-miR-124 66510 Rnf181 ccGUAAGUGGCGCAC-GGAAu |||||||: :||| |||| uuCAUUCACUAUGUGACCUUg 2 19 568 588 [mm9:6:72309989-72310009:-] 0.4848 138 0 -24.11 -0.1393 MIMAT0000150 mmu-miR-138 66510 Rnf181 gccgGACUAAGUGUU--GUGGUCGa | | | |||:: ||||||| ccugCAGCUGCACGGCUCACCAGCc 2 20 81 105 [mm9:6:72310472-72310496:-] 0.5740 150 7 -22.77 -0.1342 MIMAT0000215 mmu-miR-186 66510 Rnf181 ucggguUUUCCUCUUAAGAAAc ||| |||||||||| acgugcAAAUUAGAAUUCUUUu 2 17 822 843 [mm9:6:72309734-72309755:-] 0.5635 164 7 -14.04 -1.1368 MIMAT0000225 mmu-miR-195 66510 Rnf181 cgguuauaaagacACGACGAu ||||||| gaauccuccacccUGCUGCUa 2 9 124 144 [mm9:6:72310433-72310453:-] 0.5408 140 7 -12.89 -0.4614 MIMAT0000526 mmu-miR-15a 66510 Rnf181 guGUUUGGUA-AU-ACACGACGAu |:||:| | | ||||||| ucCGAAUCCUCCACCCUGCUGCUa 2 21 121 144 [mm9:6:72310433-72310456:-] 0.5408 142 7 -16.40 -0.4581 MIMAT0000527 mmu-miR-16 66510 Rnf181 gcgguuauaaauGCACGACGAu | ||||||| cgaauccuccacCCUGCUGCUa 2 11 123 144 [mm9:6:72310433-72310454:-] 0.5408 142 7 -12.85 -0.4614 MIMAT0000531 mmu-miR-22 66510 Rnf181 ugucaagaaguugaCCGUCGAa ||||||| --------------GGCAGCUg 2 9 1 8 [mm9:6:72310569-72310576:-] 0.4973 140 7 -11.59 -0.2053 MIMAT0000548 mmu-miR-322 66510 Rnf181 agGUUUUGUACUU--AACGACGAc |:|| | | | ||||||| ucCGAAUCCUCCACCCUGCUGCUa 2 21 121 144 [mm9:6:72310433-72310456:-] 0.5408 143 7 -14.67 -0.4614 MIMAT0000661 mmu-miR-214 66510 Rnf181 ugacggacagacacGGACGACa ||||||| uccgaauccuccacCCUGCUGc 2 9 121 142 [mm9:6:72310435-72310456:-] 0.5408 140 7 -14.81 -0.1707 MIMAT0000677 mmu-miR-7a 66510 Rnf181 uguuguuuuaGUGAUCAGAAGGu | || ||||||| cauccuucugCUCU-GUCUUCCc 2 14 637 658 [mm9:6:72309919-72309940:-] 0.4851 143 7 -12.53 -0.2062 MIMAT0000678 mmu-miR-7b 66510 Rnf181 uguuguuuuaguguuCAGAAGGu ||||||| acauccuucugcucuGUCUUCCc 2 9 636 658 [mm9:6:72309919-72309941:-] 0.4851 140 7 -12.83 -0.2214 MIMAT0000704 mmu-miR-361 66510 Rnf181 cauggggaccucuaaGACUAUu |||||| uguagcuguuuaaaaCUGAUAa 2 8 299 320 [mm9:6:72310257-72310278:-] 0.5408 120 6 -10.33 -0.1097 MIMAT0000746 mmu-miR-381 66510 Rnf181 ugucUCUCGAACGGGA-ACAUAu | || ||||:|| ||||| uguaAAAG-UUGCUCUCUGUAUc 2 19 430 451 [mm9:6:72310126-72310147:-] 0.5032 128 0 -13.01 -0.2847 MIMAT0000748 mmu-miR-383 66510 Rnf181 ucggUGUCAGUGGAAGAC-UAGa | |||::|: |||| ||| uguaAAAGUUGCUCUCUGUAUCc 2 19 430 452 [mm9:6:72310125-72310147:-] 0.5032 126 0 -13.73 -0.4542 MIMAT0003128 mmu-miR-485 66510 Rnf181 cuuaaguagUGCCGGUCGGAGa :|| :||||||| cagggcugaGCGCUCAGCCUCu 2 14 10 31 [mm9:6:72310546-72310567:-] 0.4951 149 7 -21.08 -0.8118 MIMAT0003172 mmu-miR-542-3p 66510 Rnf181 aaagucaauaguUAGACAGUGu ||||||||| uaucugaauggcAUCUGUCACu 2 11 697 718 [mm9:6:72309859-72309880:-] 0.5281 150 7 -14.22 -0.7072 MIMAT0003893 mmu-miR-761 66510 Rnf181 acacagucaAAGUGGGACGACg | |||||||||| uccgaauccUCCACCCUGCUGc 2 14 121 142 [mm9:6:72310435-72310456:-] 0.5408 157 7 -23.76 -0.1723 MIMAT0003453 mmu-miR-497 66510 Rnf181 auGUUU--GGUGUCACACGACGAc |:|| |: || ||||||| ucCGAAUCCUCCACCCUGCUGCUa 2 21 121 144 [mm9:6:72310433-72310456:-] 0.5408 147 7 -15.28 -0.4515 MIMAT0004896 mmu-miR-590-3p 66510 Rnf181 ugaucgaaUAUGUAUUUUAau :||| |||||| auaaaaaaGUAC-UAAAAUa- 3 14 851 869 [mm9:6:72309708-72309726:-] 0.6211 127 0 -4.06 -0.3540

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G061644 Rnf181 Mus musculus 66510

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf181 mmu-miR-2145 beg:73 end:86 pic:3' TTGGTCCGGGCTGGGACGA 5'& ||| ||||||| &5' -------CCC-ACCCTGC- 3' Rnf181 mmu-miR-17star beg:806 end:822 pic:3' GATGTTCACGGGAGTGACGTCA 5'& | | |||||||| &5' --------GAACACACTGCAG- 3' Rnf181 mmu-miR-20bstar beg:806 end:822 pic:3' GATCTTCACGAGTGTGACGTCA 5'& | |||||||||| &5' --------GAACACACTGCAG- 3' Rnf181 mmu-miR-138 beg:90 end:105 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& ||||. ||||||| &5' CGGCT----------CACCAGC- 3' Rnf181 mmu-miR-759 beg:44 end:56 pic:3' CAGTTTTAACAAACGTGAGACG 5'& ||||||||| &5' ------------TGCACTCTG- 3' Rnf181 mmu-miR-1962 beg:192 end:212 pic:3' TACACAGGGTCACGGTCGGAGA 5'& |||| ||||||||||| &5' -----TCCCTCTGCCAGCCTCT 3' Rnf181 mmu-miR-485 beg:16 end:32 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& .|| |||||||| &5' ---------GCGCTCAGCCTCT 3' Rnf181 mmu-miR-1968 beg:0 end:10 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& ..||||||| &5' --------------GGCAGCTGC- 3' Rnf181 mmu-miR-327 beg:723 end:741 pic:3' TAGGAGTACGG-GGAGTTCA 5'& ||. || ||||||| &5' -TCTG---GCAACCTCAAG- 3' Rnf181 mmu-miR-298 beg:31 end:50 pic:3' CCCTTCTTGTCGGGA-GGAGACGG 5'& .|.| ||.| ||||||| &5' ------GATA-CCTTCCCTCTGC- 3' Rnf181 mmu-miR-761 beg:129 end:143 pic:3' ACACAGTCAAAGTGGGACGACG 5'& ||||||||||| &5' -----------CACCCTGCTGC 3' Rnf181 mmu-miR-666-3p beg:75 end:90 pic:3' TCGTCCGCTAGTGCGACGTCGG 5'& ||| |||||||. &5' ----------CACCCTGCAGCT 3' Rnf181 mmu-miR-484 beg:283 end:294 pic:3' TAGCCCTCCCCTGACTCGGACT 5'& |||||||. &5' --------------GAGCCTGG 3' Rnf181 mmu-miR-652 beg:453 end:472 pic:3' GTGTTGGGATCA-CCGCGGTAA 5'& .||| || ||||||||| &5' -----TCCT-GTAGGCGCCATT 3' Rnf181 mmu-miR-453 beg:719 end:737 pic:3' ACGTTCGAGTGATACTCCGTTGGA 5'& ||.|. || |||||||| &5' ----AGTTT-CT----GGCAACCT 3' Rnf181 mmu-miR-296-5p beg:215 end:234 pic:3' TGTCCTAACTC-CC-CCCCGGGA 5'& ||.| || |||||||| &5' -------TGGGTGGTGGGGCCCT 3' Rnf181 mmu-miR-7a beg:643 end:658 pic:3' TGTTGTTTTAGTGAT-CAGAAGGT 5'& .|| ||||||| &5' -----------GCTCTGTCTTCC- 3' Rnf181 mmu-miR-7b beg:643 end:658 pic:3' TGTTGTTTTAGTGTT-CAGAAGGT 5'& .| ||||||| &5' -----------GCTCTGTCTTCC- 3' Rnf181 mmu-miR-1193 beg:577 end:587 pic:3' CTATCATTTTGCCCACTGGAT 5'& ||||||| &5' -------------GTGACCT- 3' Rnf181 mcmv-miR-M23-2 beg:112 end:134 pic:3' GGCGAACT-GGCTCCGGGGGTA 5'& ||| |||| ||.||| &5' --GCTCCTTCCGAATCCTCCA- 3' Rnf181 mcmv-miR-M44-1 beg:135 end:157 pic:3' TGGCGCCGAGACCTTTTTCTAT 5'& |.|| ||| |.||||||. &5' -CTGCTGCTAGCCAGAAAGATG 3' Rnf181 mghv-miR-M1-6 beg:706 end:728 pic:3' TTTTGGTGG--AGTGT--GTCAAAGT 5'& ||.| |||| .|||||| &5' -----CATCTGTCACTCTTAGTTTC- 3' Rnf181 mmu-miR-1195 beg:609 end:634 pic:3' ACTCGTCCGACCGGAGCTTGAGT 5'& || |||||| ||||.| |||.| &5' -GACCAGGCTCGCCTTGTACTTA 3' Rnf181 mmu-miR-1224 beg:644 end:667 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& ||| .||.|||||| .| . &5' CTCTGTCTTCCCAGTGTTGG- 3' Rnf181 mmu-miR-125a-3p beg:726 end:752 pic:3' CCGA--GGGTTCTTGGAGTGGACA 5'& ||| |.||||||.||. |||| &5' GGCAACCTCAAGAATCTTTCCTG- 3' Rnf181 mmu-miR-1-2-as beg:661 end:682 pic:3' ACCTTACATTTCTTCATACAT 5'& |||.|| .||||||| &5' TGGGATTACT---GGTATGTA 3' Rnf181 mmu-miR-1306 beg:465 end:487 pic:3' GTAGTGGTGGTCTCGGTTGCA 5'& |||.|.|| .|| ||| | &5' CATTATCAA-GGAATCAAAG- 3' Rnf181 mmu-miR-141star beg:419 end:441 pic:3' AGGTTGTGACGTGACCTTCTAC 5'& |..||||.||.| ||| || &5' TTTAACATTGTAA---AAGTTG 3' Rnf181 mmu-miR-142-3p beg:802 end:821 pic:3' AGGTATTTCATCCTT-TGTGATGT 5'& |||| ||| |||||.|| &5' TCCA--------GAACACACTGCA 3' Rnf181 mmu-miR-146bstar beg:736 end:755 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& ||||. |.|||.||| &5' ---AGAATCT--TTCCTGGGG- 3' Rnf181 mmu-miR-15b beg:128 end:145 pic:3' ACATTTGGTACTACACGACGAT 5'& ||| |||||||| &5' ------CCACCC--TGCTGCTA 3' Rnf181 mmu-miR-15bstar beg:780 end:805 pic:3' ATCTCGTCGTTTAT-TACTAAGC 5'& |.|| |.| .|||||| &5' TGGATCGGACCCTCCGTGATTC- 3' Rnf181 mmu-miR-17 beg:285 end:301 pic:3' GATGGACGTGACATTCGTGAAAC 5'& || ||| ||.||||| &5' ------GC-CTG---GCGCTTTG 3' Rnf181 mmu-miR-181a beg:242 end:263 pic:3' TGAGTGGCTGT-CGCA-ACTTACAA 5'& |.| | || |||.|||| &5' -------GGCTTGGGTCTGAGTGTT 3' Rnf181 mmu-miR-184 beg:635 end:655 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& |.||| || |||.|||. &5' ATCCT--TCTG--CTCTGTCT- 3' Rnf181 mmu-miR-1906 beg:124 end:143 pic:3' TCGGGACGGAGTCCGACGACGT 5'& .||| || | ||||||| &5' --TCCT-CCACC--CTGCTGC- 3' Rnf181 mmu-miR-1907 beg:125 end:144 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& |||||| || |||||||| &5' -CCTCCA---CC-CTGCTGCT- 3' Rnf181 mmu-miR-190b beg:682 end:701 pic:3' TTGGGTTATAGTTTGTATAGT 5'& |||| .|..|||| &5' -ACCCTTAC---GATGTATC- 3' Rnf181 mmu-miR-1929 beg:214 end:238 pic:3' GAGACGAGATATTTCAGGATCTT 5'& ||||| .|...| ||||||| &5' CTCTGGGTGGTGGGGCCCTAGAA 3' Rnf181 mmu-miR-1929 beg:578 end:601 pic:3' GAGACGAGATATTTCAGGATCTT 5'& | || || |||.|.||| &5' -TGTGACCTTGGCTGTCTTGGAA 3' Rnf181 mmu-miR-1935 beg:185 end:205 pic:3' TCTCTAGGCGGTC--GGAGACGGA 5'& |. |.|| |||||||| &5' ---GG-CTGCAATTCCCTCTGCC- 3' Rnf181 mmu-miR-1935 beg:635 end:655 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& |||| .| | |||||.|| &5' ----ATCCTTCTG-CTCTGTCT 3' Rnf181 mmu-miR-1937a beg:657 end:671 pic:3' ACCCCCGAGCA-GGCCCTAA 5'& || ..|||||| &5' ---------GTGTTGGGATT 3' Rnf181 mmu-miR-1940 beg:112 end:134 pic:3' TTGACGAGGT-GGAAGAGTCAGGAGGTA 5'& ||||| || ||||||| &5' ----GCTCCTTCCGAA----TCCTCCA- 3' Rnf181 mmu-miR-1942 beg:698 end:714 pic:3' GTTGGTCTACTT-CTGTAGACT 5'& |||| |.|||||| &5' --------TGAATGGCATCTG- 3' Rnf181 mmu-miR-1946a beg:276 end:295 pic:3' TTTTCACACACGGTGGTGACGGGCCGA 5'& ||||.|| |||.||| &5' -------TGTGTCAGA---GCCTGGC- 3' Rnf181 mmu-miR-1949 beg:660 end:679 pic:3' TTGATACGACTGTAG-GACCATATC 5'& ||.||. ||. |||||||. &5' -----TGTTGGGATTACTGGTATG- 3' Rnf181 mmu-miR-195 beg:134 end:145 pic:3' CGGTTATAAAGACACGACGAT 5'& |||||||| &5' -------------TGCTGCTA 3' Rnf181 mmu-miR-1953 beg:731 end:751 pic:3' GTCTTCGGAC-TCTT-GAAAGGGT 5'& ||| |||| ||||||. &5' ------CCTCAAGAATCTTTCCT- 3' Rnf181 mmu-miR-1962 beg:9 end:32 pic:3' TACACAGGGTCACG-GTCGGAGA 5'& | |. || || |||||||| &5' --GGG-CTGAGCGCTCAGCCTCT 3' Rnf181 mmu-miR-1967 beg:791 end:807 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& |.||. |||.||| &5' ---------CTCCGTGATTCTC- 3' Rnf181 mmu-miR-1968 beg:69 end:93 pic:3' TCAGGTGGTA-GGAATTGTCGACGT 5'& |..||| ||| .|||||||| &5' --TTTACCCACCCT--GCAGCTGCA 3' Rnf181 mmu-miR-2140 beg:324 end:334 pic:3' TGGTGGTTCTAGACGTGGA 5'& .|||||| &5' -----------TTGCACC- 3' Rnf181 mmu-miR-2140 beg:33 end:53 pic:3' TGGTGGTTCT-AGACGTGGA 5'& .||| |||||||. &5' --TACCTTCCCTCTGCACT- 3' Rnf181 mmu-miR-2141 beg:28 end:43 pic:3' TTGAAAAGACTGTGGAGGA 5'& |||||.||||.| &5' ------TCTGATACCTTC- 3' Rnf181 mmu-miR-2145 beg:609 end:629 pic:3' TTGGTCCGGGCTGGGACGA 5'& .|||||||.|| ||.||. &5' GACCAGGCTCG-CCTTGT- 3' Rnf181 mmu-miR-2145 beg:119 end:141 pic:3' TTGGTCCGGGC--TGGGACGA 5'& ||. .|| |||||||| &5' --CCGAATCCTCCACCCTGCT 3' Rnf181 mmu-miR-2146 beg:787 end:809 pic:3' GTGTACCTTGGGA-------AGAGGTG 5'& |.||||| |||||| &5' ------GGACCCTCCGTGATTCTCCA- 3' Rnf181 mmu-miR-215 beg:475 end:491 pic:3' CAGACAGTTTAGTATCCAGTA 5'& .||||| |||||| &5' -------GAATCAAAGGTCA- 3' Rnf181 mmu-miR-216a beg:654 end:672 pic:3' AGTGTCAACGGTCG--ACTCTAAT 5'& ||||. ||.||||| &5' ---------CCAGTGTTGGGATTA 3' Rnf181 mmu-miR-219 beg:530 end:544 pic:3' TCTTAACGCAAACCTGTTAGT 5'& | |||||.|| &5' --------GGG-GGACAGTC- 3' Rnf181 mmu-miR-223 beg:302 end:320 pic:3' ACCCCATAAACTGTTTGACTGT 5'& |.||| |||||||.| &5' -----TGTTTA--AAACTGATA 3' Rnf181 mmu-miR-28 beg:103 end:122 pic:3' GAGTTATCTGACA-CTCGAGGAA 5'& || |.||||||| &5' -------GAAGCAGGGGCTCCTT 3' Rnf181 mmu-miR-298 beg:183 end:205 pic:3' CCCTTCTTGTCGGGAGGAGACGG 5'& || .|| ..| |||||||| &5' -GGCT--GCAATTC-CCTCTGCC 3' Rnf181 mmu-miR-29bstar beg:599 end:618 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& ||||.|||| |.||||| &5' ----CCACTATAT-AGACCAG- 3' Rnf181 mmu-miR-322 beg:124 end:144 pic:3' AGGTTTTGTACTTAACGACGAC 5'& ||| || ||||||| &5' TCCTCCACCC----TGCTGCT- 3' Rnf181 mmu-miR-339-3p beg:276 end:299 pic:3' GCCGAGACAG---CGGCTCCGCGAGT 5'& || |||| ||| ||||||. &5' ---CTGTGTCAGAGCCT-GGCGCTT- 3' Rnf181 mmu-miR-3475 beg:793 end:811 pic:3' AAGTTTGGTACACGGAGGTCT 5'& ||.|| .||||||| &5' ------CCGTGATTCTCCAGA 3' Rnf181 mmu-miR-3475 beg:196 end:215 pic:3' AAGTTTGGTACACGGAGGTCT 5'& || .||| |||||.||| &5' -TCT-GCCA---GCCTCTAGA 3' Rnf181 mmu-miR-375 beg:221 end:240 pic:3' AGTGCG-CTCGGCTTGCTTGTTT 5'& |. |.||| |||||| &5' ----GTGGGGCCCTA-GAACAA- 3' Rnf181 mmu-miR-380-3p beg:593 end:612 pic:3' TTCTACACC-TGGTATGATGTAT 5'& ||| ||| ||||.||| &5' ------TGGAACCC-ACTATATA 3' Rnf181 mmu-miR-450a-3p beg:720 end:740 pic:3' TACTTACGTT--TCGTAGGGGTTA 5'& |. .||| ||.||| &5' ------GTTTCTGGCAACCTCAA- 3' Rnf181 mmu-miR-450b-3p beg:642 end:662 pic:3' TACGTACGTTTTACAAGGGTTA 5'& ||| .| ||||||.| &5' -----TGCTCTGTCTTCCCAGT 3' Rnf181 mmu-miR-450b-5p beg:804 end:823 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& || ||||| ||||||.| &5' ----CA-GAACACACTGCAGA- 3' Rnf181 mmu-miR-470star beg:658 end:677 pic:3' AGAAGAGTCTTTCCATGACCAA 5'& | | |.| ||||||| &5' ---TGTTGGGAT--TACTGGT- 3' Rnf181 mmu-miR-485 beg:189 end:212 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& ||||| | | |||||||||| &5' -AATTCC-CTCTGCCAGCCTCT 3' Rnf181 mmu-miR-497 beg:128 end:144 pic:3' ATGTTTGGTGTCACACGACGAC 5'& |||| ||||||| &5' ------CCACCC--TGCTGCT- 3' Rnf181 mmu-miR-503 beg:132 end:145 pic:3' GACGTCATGACAAGGGCGACGAT 5'& ||.||||||| &5' -------------CCTGCTGCTA 3' Rnf181 mmu-miR-542-3p beg:696 end:718 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& || ||||||||| &5' --TCTGAATGGCATCTGTCAC- 3' Rnf181 mmu-miR-665 beg:731 end:753 pic:3' TCCCTGGAG-TC----GGAGGACCA 5'& ||||| || ..|||||| &5' ----ACCTCAAGAATCTTTCCTGG- 3' Rnf181 mmu-miR-667 beg:153 end:169 pic:3' GAACCCGACCCACCGTCCACAGT 5'& || |||||||| &5' ----------GTCAAAGGTGTCA 3' Rnf181 mmu-miR-669g beg:673 end:699 pic:3' TAGTACAGTTGTGT--ATGTTACGT 5'& .|||| |||| |||.|||.| &5' --TATGTACACACCCTTACGATGTA 3' Rnf181 mmu-miR-672 beg:718 end:739 pic:3' AGTGTGTGTCAT--GTGGTTGGAGT 5'& .||| .. |||||||| &5' -------TAGTTTCTGGCAACCTCA 3' Rnf181 mmu-miR-676 beg:719 end:742 pic:3' TCGAG--TTGTTGGAGTCCTGCC 5'& ||.|. ..|||||||| || &5' AGTTTCTGGCAACCTCAAGA--- 3' Rnf181 mmu-miR-680 beg:143 end:168 pic:3' GGGGG----TACAGTCGTCTACGGG 5'& || |||||| ||.||.| &5' -CCAGAAAGATGTCAA-AGGTGTC- 3' Rnf181 mmu-miR-693-3p beg:423 end:442 pic:3' AATGTCGGTGTAGAC-TTTCGACG 5'& ||||. ||||.||| &5' --------ACATTGTAAAAGTTGC 3' Rnf181 mmu-miR-705 beg:325 end:344 pic:3' ACG-GGTGGGGTGGAGGGTGG 5'& ||| |||||||| |||| &5' TGCACCACCCCA-CTCC---- 3' Rnf181 mmu-miR-706 beg:51 end:75 pic:3' AAAAAACTCTGTC----CCAAAGAGA 5'& ||| || |||||||.| &5' -----TGAATCATTAAAGGTTTCTTT 3' Rnf181 mmu-miR-709 beg:636 end:657 pic:3' AGGAGGACGGAGACGGAGG 5'& ||||.||| |||||.||.| &5' TCCTTCTG-CTCTGTCTTC 3' Rnf181 mmu-miR-710 beg:238 end:252 pic:3' GAGTTGAGAGGGGTTCTGAACC 5'& |||.|.||||| &5' -----------CCAGGGCTTGG 3' Rnf181 mmu-miR-744 beg:73 end:87 pic:3' ACGACAATCGGGATCGGGGCGT 5'& ||| |||.||| &5' ---------CCCA--CCCTGCA 3' Rnf181 mmu-miR-744 beg:29 end:51 pic:3' ACGACAATCGGGATCGGGGCGT 5'& ||| || ||.| |.|.||| &5' --CTGATA-CCTTCCCTCTGCA 3' Rnf181 mmu-miR-760 beg:270 end:291 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& .| || | .||||||| &5' -TCAAACTGTGTCAGAGCC- 3' Rnf181 mmu-miR-762 beg:192 end:211 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& |||| . ||||||.| &5' ------TCCCTCTGCCAGCCTC 3' Rnf181 mmu-miR-770-3p beg:82 end:101 pic:3' GGTCGAGGTGCAGTCCGGGTGC 5'& ||||| ||| |||.||| &5' -CAGCTGCAC----GGCTCAC- 3' Rnf181 mmu-miR-871 beg:43 end:59 pic:3' GTACTGACCGTGATTAGACTTAT 5'& || |||| ||||||| &5' -----CT-GCAC---TCTGAAT- 3' Rnf181 mmu-miR-877 beg:193 end:213 pic:3' GGGACGCGGTAGAGGAGATG 5'& |||| .|||| |||||| &5' CCCTCTGCCAG--CCTCTA- 3' Rnf181 mmu-miR-878-5p beg:767 end:788 pic:3' ACAGAACTGTAGGT-----TGATCTAT 5'& ||||| |||.||| &5' --------CATCCCTGCCCACTGGAT- 3' Rnf181 mmu-miR-882 beg:12 end:34 pic:3' TGATTACGCGA-TTGAGAGAGGA 5'& .||.| ||||| |.| |||||. &5' GCTGA-GCGCTCAGC-CTCTCT- 3' Rnf181 mmu-miR-92astar beg:325 end:342 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& || ||||| ||||||. &5' ----TG-CACCA--CCCCACT- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf181 RAID00002500 mmu-miR-7079-3p miRNA MIMAT0028065 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID00054460 mmu-miR-15b-5p miRNA MIMAT0000124 Rnf181 mRNA 66510 CLIP-seq//Prediction 0.6308 Rnf181 RAID00227049 mmu-miR-361-3p miRNA MIMAT0017075 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID00278015 mmu-miR-346-3p miRNA MIMAT0017039 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID00406455 mmu-miR-7214-5p miRNA MIMAT0028396 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID00535841 mmu-miR-370-5p miRNA MIMAT0017174 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID00873349 mmu-miR-6956-5p miRNA MIMAT0027812 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID00989906 mmu-miR-124-3p miRNA MIMAT0000134 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID01122675 mmu-miR-381-3p miRNA MIMAT0000746 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID01139282 mmu-miR-7686-5p miRNA MIMAT0029898 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID01229903 mmu-miR-761 miRNA MIMAT0003893 Rnf181 mRNA 66510 CLIP-seq//Prediction 0.6478 Rnf181 RAID01559057 mmu-miR-542-3p miRNA MIMAT0003172 Rnf181 mRNA 66510 CLIP-seq//Prediction 0.6308 Rnf181 RAID01574431 mmu-miR-186-5p miRNA MIMAT0000215 Rnf181 mRNA 66510 Prediction 0.2202 Rnf181 RAID01677289 mmu-miR-6958-3p miRNA MIMAT0027817 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID01849777 mmu-miR-383-5p miRNA MIMAT0000748 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID01870160 mmu-miR-6419 miRNA MIMAT0025175 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID01958991 mmu-miR-214-3p miRNA MIMAT0000661 Rnf181 mRNA 66510 CLIP-seq//Prediction 0.6478 Rnf181 RAID01963325 mmu-miR-1193-3p miRNA MIMAT0005851 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID02024667 mmu-miR-7a-5p miRNA MIMAT0000677 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID02080526 mmu-miR-496a-5p miRNA MIMAT0017244 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID02279076 mmu-miR-590-3p miRNA MIMAT0004896 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID02303563 mmu-miR-298-5p miRNA MIMAT0000376 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID02585362 mmu-miR-6963-5p miRNA MIMAT0027826 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID02703783 mmu-miR-16-5p miRNA MIMAT0000527 Rnf181 mRNA 66510 CLIP-seq//Prediction 0.6308 Rnf181 RAID02817784 mmu-miR-7679-5p miRNA MIMAT0029872 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID02823579 mmu-miR-15a-5p miRNA MIMAT0000526 Rnf181 mRNA 66510 CLIP-seq//Prediction 0.6308 Rnf181 RAID02971091 mmu-miR-138-5p miRNA MIMAT0000150 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID03075938 mmu-miR-7656-5p miRNA MIMAT0029818 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID03135814 mmu-miR-7011-5p miRNA MIMAT0027926 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID03166681 mmu-miR-195a-5p miRNA MIMAT0000225 Rnf181 mRNA 66510 CLIP-seq//Prediction 0.6308 Rnf181 RAID03457586 mmu-miR-7001-5p miRNA MIMAT0027904 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID03527981 mmu-miR-453 miRNA MIMAT0004870 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID03591980 mmu-miR-701-3p miRNA MIMAT0017257 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID03598447 mmu-miR-322-5p miRNA MIMAT0000548 Rnf181 mRNA 66510 CLIP-seq//Prediction 0.6308 Rnf181 RAID03677440 mmu-miR-485-5p miRNA MIMAT0003128 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID03693709 mmu-miR-497a-5p miRNA MIMAT0003453 Rnf181 mRNA 66510 CLIP-seq//Prediction 0.6308 Rnf181 RAID03944379 mmu-miR-7b-5p miRNA MIMAT0000678 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID03977947 mmu-miR-6546-5p miRNA MIMAT0029792 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID03978301 mmu-miR-22-3p miRNA MIMAT0000531 Rnf181 mRNA 66510 Prediction 0.1828 Rnf181 RAID03996009 mmu-miR-541-5p miRNA MIMAT0003170 Rnf181 mRNA 66510 NGS (Next Generation Sequencing) 0.5483 Rnf181 RAID03996605 mmu-miR-361-5p miRNA MIMAT0000704 Rnf181 mRNA 66510 Prediction 0.1828