DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 67591 Ubl4b aucuCGUCGUUUAUUACUAAGc | ||:: | |||||||| uucuGAAGUGCAGAAUGAUUCu 2 19 175 196 [mm9:3:107357098-107357119:-] 0.5176 158 7 -13.02 -0.3710 MIMAT0004533 mmu-miR-141* 67591 Ubl4b aggUUGUGA--CGU-GACCUUCUAc | |::| |:| ||||||||| uaaACCGUUAAGUAGCUGGAAGAUa 2 20 113 137 [mm9:3:107357157-107357181:-] 0.5190 153 7 -20.56 -0.7560 MIMAT0004542 mmu-miR-191* 67591 Ubl4b cccuugcuuuAGG-UUCACGUCg ||: |||||||| uaggcccccuUCUGAAGUGCAGa 2 13 166 188 [mm9:3:107357106-107357128:-] 0.5183 147 7 -15.79 -0.6313 MIMAT0004542 mmu-miR-191* 67591 Ubl4b cccUUGCUUUAGG--UUCA-CGUCg :|:|||:||| :||| |||| ucaGAUGAAGUCCCAGAGUAGCAGg 2 20 555 579 [mm9:3:107356715-107356739:-] 0.5341 130 0 -22.24 -0.4374 MIMAT0004578 mmu-miR-300* 67591 Ubl4b ugUUUCCUAUUGGAGA-GAAGUu | || : ||:||| ||||| agACAGAGCCACUUCUCCUUCAg 2 21 325 347 [mm9:3:107356947-107356969:-] 0.5176 124 0 -20.03 -0.2835 MIMAT0004583 mmu-miR-130b* 67591 Ubl4b ucaUCACGUUGUCCCUUUCUCa || |:|:|| |||||||| cccAGAGUAGCA-GGAAAGAGu 2 20 566 586 [mm9:3:107356708-107356728:-] 0.5341 165 7 -22.18 -0.3419 MIMAT0004630 mmu-miR-26b* 67591 Ubl4b cucgguucauuaccUCUUGUCc ||||||| gccacuucuccuucAGAACAGa 2 9 332 353 [mm9:3:107356941-107356962:-] 0.5176 140 7 -11.40 -0.3999 MIMAT0000706 mmu-miR-362-5p 67591 Ubl4b uaaGUGUGGAUCCAAGGUUC-CUAa ||: :|| | | |||| ||| cacCAUCUCUCUGCUACAAGUGAUu 2 22 199 223 [mm9:3:107357071-107357095:-] 0.5176 121 0 -12.52 -0.5270 MIMAT0001637 mmu-miR-452 67591 Ubl4b cagaGUCAA-AGGA--GACG-UUUGu || || |||| :||| |||| guugCAUUUGUCCUUCUUGCUAAACc 2 19 93 118 [mm9:3:107357176-107357201:-] 0.5345 120 0 -10.77 -0.8139 MIMAT0003896 mmu-miR-763 67591 Ubl4b cggugaccaagaAGGGUCGACc | ||||||| aggaggaagcgcUGCCAGCUGc 2 11 408 429 [mm9:3:107356865-107356886:-] 0.5176 142 7 -17.57 -0.1596 MIMAT0003898 mmu-miR-760 67591 Ubl4b agggguguCUGGGUCUCGGc || ||||||| cauggcuuGAGACAGAGCCa 2 13 316 335 [mm9:3:107356959-107356978:-] 0.5176 144 7 -15.18 -0.5065 MIMAT0003449 mmu-miR-488* 67591 Ubl4b aacucucacgauaAUAGACCc ||||||| aguagcuggaagaUAUCUGGa 2 9 123 143 [mm9:3:107357151-107357171:-] 0.5190 140 7 -14.37 -0.6737 MIMAT0004825 mmu-miR-423-5p 67591 Ubl4b uuucagAGCGAGAGACGGG-GAGu || :||| ||||| ||| ucuggaUCCUUCUAUGCCCUCUCa 2 18 138 161 [mm9:3:107357133-107357156:-] 0.5190 129 0 -21.46 -0.2839 MIMAT0003742 mmu-miR-455 67591 Ubl4b cacAUAU-ACGGGCACCUGACg || | | ||| ||||||| cacUAAACUUCCCCUGGACUGa 2 19 23 44 [mm9:3:107357250-107357271:-] 0.5331 157 7 -19.19 -0.3562 MIMAT0004236 mmu-miR-741 67591 Ubl4b agauguAUCUUACCGUAGAGAGu ||| | |||||||| ugauucUAGCA--CCAUCUCUCu 2 18 190 210 [mm9:3:107357084-107357104:-] 0.5176 146 7 -12.47 -0.1496 MIMAT0004844 mmu-miR-880 67591 Ubl4b agaugagucucucCUACCUCAu |||||||| uuugcuuucuccuGAUGGAGUu 2 10 74 95 [mm9:3:107357199-107357220:-] 0.5499 145 7 -17.28 -0.3959 MIMAT0004845 mmu-miR-881* 67591 Ubl4b ucuacacugacaaUAGAGAGAc |||||||| ugauucuagcaccAUCUCUCUg 2 10 190 211 [mm9:3:107357083-107357104:-] 0.5176 145 7 -15.46 -0.2567 MIMAT0004863 mmu-miR-220 67591 Ubl4b uucacaGACUGUGA-CACCACc :||| ||| |||||| cugcccUUGA-ACUCGUGGUGa 2 16 426 446 [mm9:3:107356848-107356868:-] 0.5176 121 6 -14.76 -0.2160 MIMAT0004883 mmu-miR-466g 67591 Ubl4b acacacacguacaCAGACAUa ||||||| gacaggaaaaaagGUCUGUAa 2 9 591 611 [mm9:3:107356683-107356703:-] 0.5170 140 7 -9.41 -0.5978 MIMAT0004888 mmu-miR-493 67591 Ubl4b ggACCGUGUGUCAUCCU-GGAAGu ||| | |:| ||| ||||| gcUGGAAGAUAUCUGGAUCCUUCu 2 22 127 150 [mm9:3:107357144-107357167:-] 0.5190 125 0 -19.88 -0.2816 MIMAT0007873 mmu-miR-1896 67591 Ubl4b gaggAGUGGGUGGUAGUCUCUc |: | :|:| ||||||| guggUUUCGUAUCUUCAGAGAu 2 19 469 490 [mm9:3:107356804-107356825:-] 0.5176 154 7 -16.41 -0.4076 MIMAT0007873 mmu-miR-1896 67591 Ubl4b gaGGAGUGG----GUG-GUAGUCUCUc |:|::|| ||: | ||||||| agCUUUGCCAAAGCAUGCCUCAGAGAa 2 21 283 309 [mm9:3:107356985-107357011:-] 0.5176 146 7 -18.65 -0.3437 MIMAT0009392 mmu-miR-1929 67591 Ubl4b gagaCGAGAUAUUUCAGGAUCUu || | |:||||||||| aguaGCAGGAAAGAGUCCUAGAc 2 20 571 593 [mm9:3:107356701-107356723:-] 0.5170 159 7 -17.02 -0.1954 MIMAT0009428 mmu-miR-1956 67591 Ubl4b agGCGACUGAGU----CGGGACCUGa :||| ||| | |||||||| cuUGCUCACUAAACUUCCCCUGGACu 2 21 17 42 [mm9:3:107357252-107357277:-] 0.5331 151 7 -25.40 -0.2885 MIMAT0009439 mmu-miR-1966 67591 Ubl4b cugagagaggacuCGGUCGA-GGGAa ||||||| |||| aggaggaagcgcuGCCAGCUGCCCUu 2 13 408 433 [mm9:3:107356861-107356886:-] 0.5176 124 0 -22.46 -0.1665 MIMAT0009439 mmu-miR-1966 67591 Ubl4b cugagagagGACUCGGUCGA-GGGAa |||: || ||| |||| guggugaagCUGGCCCUGCUGCCCUg 2 17 440 465 [mm9:3:107356829-107356854:-] 0.5176 124 0 -20.02 -0.2016 MIMAT0009441 mmu-miR-1968 67591 Ubl4b ucagguggUAGGAAUUGUCGACGu | | |: ||||||| gaggaggaAGCGCUGCCAGCUGCc 2 17 407 430 [mm9:3:107356864-107356887:-] 0.5176 144 7 -14.17 -0.1105 MIMAT0000211 mmu-miR-182 67591 Ubl4b gccACACUCAAGAUG--GUAACGGUUu | ||||| :| | ||||||| ggcUCUGAGUGGAGCAGCUUUGCCAAa 2 23 268 294 [mm9:3:107357000-107357026:-] 0.5176 153 7 -18.38 -0.4109 MIMAT0000223 mmu-miR-193 67591 Ubl4b ugaCCCUGAAACAUCCGGUCAa | ||:| |:||||||| aaaGCGAUUGCAUGGGCCAGUc 2 20 516 537 [mm9:3:107356757-107356778:-] 0.5176 155 7 -18.79 -0.1001 MIMAT0000368 mmu-miR-291a-3p 67591 Ubl4b cgUGUGUUUCACCUUCGU-GAAa :| | :||||| |||| ||| ugGCUCUGAGUGG-AGCAGCUUu 2 21 267 288 [mm9:3:107357006-107357027:-] 0.5176 126 0 -18.02 -0.1076 MIMAT0000373 mmu-miR-295 67591 Ubl4b ucUGAGUUUUCAUCAUCGU-GAAa :||| :|||:| |||| ||| ugGCUC-UGAGUGG-AGCAGCUUu 2 22 267 288 [mm9:3:107357006-107357027:-] 0.5176 121 0 -20.51 -0.1087 MIMAT0000559 mmu-miR-326 67591 Ubl4b ugacCUCCUUCCCGGGUCUCc || ||| | ||||||| cucaGAUGAA-GUCCCAGAGu 2 18 554 573 [mm9:3:107356721-107356740:-] 0.5341 155 7 -18.40 -0.6349 MIMAT0000559 mmu-miR-326 67591 Ubl4b ugacCUCCUUCCCGG-GUCUCc ||| :|| || ||||| uucaGAGAUGGGACCACAGAGa 2 18 482 503 [mm9:3:107356791-107356812:-] 0.5176 121 0 -19.04 -0.3306 MIMAT0004642 mmu-miR-330 67591 Ubl4b cgGAUUCUGUGUCCGGGUCUCu || |||:: || ||||||| aaCUCAGAUGAAGUCCCAGAGu 2 21 552 573 [mm9:3:107356721-107356742:-] 0.5341 168 7 -23.36 -0.6460 MIMAT0000590 mmu-miR-342-3p 67591 Ubl4b ugcccacgcuaaaGACACACUCu | ||||||| ccuucagaacagaCAGUGUGAGc 2 11 341 363 [mm9:3:107356931-107356953:-] 0.5176 142 7 -11.82 -0.2989 MIMAT0003183 mmu-miR-376c 67591 Ubl4b ugcACUUUA--AAGGAGAUACAa ||:| | ||:||||||| cccUGGACUGACUCUUCUAUGUu 2 19 34 56 [mm9:3:107357238-107357260:-] 0.5331 153 7 -15.25 -0.4021 MIMAT0003377 mmu-miR-302d 67591 Ubl4b ugUGAGUUUGUACCUUCGU-GAAu :||| :| :||| |||| ||| ugGCUCUGA-GUGG-AGCAGCUUu 2 22 267 288 [mm9:3:107357006-107357027:-] 0.5176 121 0 -16.01 -0.1120 MIMAT0004859 mmu-miR-193b 67591 Ubl4b ucgCCCUGAAACACCCGGUCAa | ||:| ||||||||| aaaGCGAUUGCAUGGGCCAGUc 2 20 516 537 [mm9:3:107356757-107356778:-] 0.5176 159 7 -23.93 -0.1001 MIMAT0004941 mmu-miR-544 67591 Ubl4b cucGAACGAUUUUUACGUCUUa ||| || :||:||||||| cccCUU-CU-GAAGUGCAGAAu 2 20 171 190 [mm9:3:107357104-107357123:-] 0.5176 159 7 -17.53 -0.2282

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G066876 Ubl4b Mus musculus 67591

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ubl4b mmu-miR-741 beg:199 end:210 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& |||||||| &5' --------------CATCTCTC- 3' Ubl4b mmu-miR-15bstar beg:178 end:196 pic:3' ATCTCGTCGTTTATTACTAAGC 5'& || |||| |||||||| &5' -AGTGCAG-----AATGATTC- 3' Ubl4b mmu-miR-330 beg:554 end:573 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& |||.. || ||||||| &5' -----AGATGAAGTCCCAGAG- 3' Ubl4b mmu-miR-326 beg:555 end:573 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& || |||| ||||||| &5' ----GATGAAGT-CCCAGAG- 3' Ubl4b mmu-miR-130bstar beg:569 end:586 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& |.|.|| ||||||||| &5' ------GTAGCA-GGAAAGAGT 3' Ubl4b mmu-miR-3099star beg:438 end:453 pic:3' GTTCCCGACCTTCCTTCGACC 5'& ||| |||||||| &5' -------TGGT--GAAGCTGG 3' Ubl4b mmu-miR-141star beg:121 end:137 pic:3' AGGTTGTGACGT-GACCTTCTAC 5'& |.| ||||||||| &5' ---------GTAGCTGGAAGAT- 3' Ubl4b mmu-miR-193b beg:518 end:537 pic:3' TCGCCCTGAAACACCCGGTCAA 5'& || ||.| ||||||||| &5' -GC--GATTGCATGGGCCAGT- 3' Ubl4b mmu-miR-466g beg:601 end:611 pic:3' ACACACACGTACACAGACATA 5'& ||||||| &5' -------------GTCTGTA- 3' Ubl4b mmu-miR-342-3p beg:353 end:363 pic:3' TGCCCACGCTAAAGACACACTCT 5'& ||||||| &5' ---------------GTGTGAG- 3' Ubl4b mcmv-miR-m01-1 beg:323 end:345 pic:3' GGCAAGCTGCAAT----AAGAGGAGA 5'& ||| |||||||. &5' ------GACAGAGCCACTTCTCCTT- 3' Ubl4b mcmv-miR-m01-1 beg:55 end:75 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& |||. | |||.|.|||| &5' ----TCGG-GCAATTTTTCTCT 3' Ubl4b mcmv-miR-m01-2 beg:55 end:77 pic:3' TGGCAAGGTTGGGCT-AAGAGAAG 5'& || ..| |||||||. &5' -----TCGGGCAATTTTTCTCTTT 3' Ubl4b mcmv-miR-m108-1 beg:286 end:309 pic:3' GCTGTGCTCG-GTGGCAGTCTTT 5'& | || ||| ..|| |||||.| &5' -GCCAA-AGCATGCC-TCAGAGA 3' Ubl4b mcmv-miR-m21-1 beg:17 end:38 pic:3' GCCGAACTTGCAC-AGGGGATA 5'& ||| ||||||. &5' --GCTCACTAAACTTCCCCTG- 3' Ubl4b mcmv-miR-M87-1 beg:454 end:477 pic:3' CGACGGCGACGGCTGCCGACGGA 5'& |||||| ||||. .||.| .| &5' GCTGCC-CTGCTTGTGGTT-TC- 3' Ubl4b mghv-miR-M1-3 beg:443 end:465 pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& |||| ...| |||||| ||| &5' AAGC-TGGC-CCTGCTGCCCT- 3' Ubl4b mmu-let-7a beg:286 end:305 pic:3' TTGATATGTTGGA--TG-ATGGAGT 5'& .|| .| |.||||| &5' ---------GCCAAAGCATGCCTCA 3' Ubl4b mmu-let-7b beg:286 end:305 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& .||| |.| |.||||| &5' -GCCAA--AGCA---TGCCTCA 3' Ubl4b mmu-let-7c beg:286 end:305 pic:3' TTGGTATGTTGGATGATGGAGT 5'& .||| |.| |.||||| &5' -GCCAA--AGCA---TGCCTCA 3' Ubl4b mmu-let-7e beg:286 end:305 pic:3' TTGATATGTTGGA---GGATGGAGT 5'& .|| | |.||||| &5' ---------GCCAAAGCATGCCTCA 3' Ubl4b mmu-let-7f beg:292 end:305 pic:3' TTGATATGTTAGATG-ATGGAGT 5'& .| |.||||| &5' -------------GCATGCCTCA 3' Ubl4b mmu-let-7g beg:284 end:305 pic:3' TTGACATGTTTGATGATGGAGT 5'& .|| ||.| |.||||| &5' --TTGCCAAAGCA--TGCCTCA 3' Ubl4b mmu-let-7i beg:286 end:305 pic:3' TTGTCGTGTTTGATG-ATGGAGT 5'& || |||| .| |.||||| &5' ----GC-CAAA--GCATGCCTCA 3' Ubl4b mmu-miR-106bstar beg:342 end:361 pic:3' CGTCGTTCATGGGTGTCACGCC 5'& ||| || ||||||.| &5' -CAGA----ACAGACAGTGTG- 3' Ubl4b mmu-miR-1195 beg:418 end:440 pic:3' ACTCGTCCGACCGGAGCTTGAGT 5'& || |||| |||.|||||| &5' ---GCCAGCTGCCCTTGAACTC- 3' Ubl4b mmu-miR-1274a beg:525 end:548 pic:3' ACCGCGGACTTGTCCCTGGACT 5'& ||| ||| | | |||.|.|| &5' TGG-GCCAGTCCTGGGGCTTG- 3' Ubl4b mmu-miR-138star beg:116 end:131 pic:3' GGGACCACAACACTTCATCGGC 5'& || |||||||.| &5' ----------GTTAAGTAGCTG 3' Ubl4b mmu-miR-139-3p beg:297 end:318 pic:3' GAGGTTGTCCCGGCGCAGAGGT 5'& || ||| | ||||||| &5' --CCT-CAGAGAAA-GTCTCCA 3' Ubl4b mmu-miR-145star beg:495 end:517 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||. |||| |.|||.| &5' CAGAGACAGGAG--CTAGGGA- 3' Ubl4b mmu-miR-145star beg:578 end:599 pic:3' GTTCTTG-TCATAAAG-GTCCTTA 5'& ||| ||| |||||| &5' ---GAAAGAGTCCTAGACAGGAA- 3' Ubl4b mmu-miR-146bstar beg:528 end:545 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& .|||| .|||.|||| &5' GCCAG--------TCCTGGGGC 3' Ubl4b mmu-miR-149 beg:488 end:515 pic:3' CCCTCAC--TTCTGTGCCTCGGTCT 5'& |||| .||||| |||||.||. &5' GGGACCACAGAGACA-GGAGCTAGG 3' Ubl4b mmu-miR-182 beg:273 end:295 pic:3' GC-CACACTCAAGATGGTAACGGTTT 5'& | ||| ||| .|. |||||||| &5' -GAGTG-GAGCA--GCT-TTGCCAAA 3' Ubl4b mmu-miR-1896 beg:287 end:309 pic:3' GAGGAG-TGGGTGGTAGTCTCTC 5'& || .| .|| ||||||| &5' --CCAAAGCATGCC-TCAGAGA- 3' Ubl4b mmu-miR-1896 beg:491 end:504 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& |||| |||||| &5' ----------ACCA-CAGAGA- 3' Ubl4b mmu-miR-1897-5p beg:330 end:349 pic:3' GGGGGAGAAAGAGGTAGGTTTC 5'& || | |||||| |.||.| &5' ---CCAC-TTCTCC-TTCAGA- 3' Ubl4b mmu-miR-1903 beg:394 end:417 pic:3' ACAGAGTCCTTCTTCTTCTTCC 5'& || .| .|||.||.|||| &5' -GTAGTATAGAGAGGAGGAAG- 3' Ubl4b mmu-miR-1904 beg:562 end:581 pic:3' GGAGGGAGGTCTCCTCGTCTTG 5'& .| |||||| |||||.| &5' ----TC-CCAGAGTAGCAGGA- 3' Ubl4b mmu-miR-1929 beg:572 end:592 pic:3' GAGACGAGATATTTCAGGATCTT 5'& || |.||||||||| &5' ----GCAGGAAAGAGTCCTAGA- 3' Ubl4b mmu-miR-1929 beg:520 end:543 pic:3' GAGACGAGATATTTCAGGATCTT 5'& .||| ||||||.|. &5' --TTGCATGGGCCAGTCCTGGG- 3' Ubl4b mmu-miR-1935 beg:196 end:214 pic:3' TCTCTAGGCGGTCG-GAGACGGA 5'& | ||| | ||||||. &5' -------CACCATCTCTCTGCT- 3' Ubl4b mmu-miR-1940 beg:323 end:347 pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& .|| | ||| |||| ||||.|| &5' GACAGAGCCA-CTTC----TCCTTCA- 3' Ubl4b mmu-miR-1948 beg:620 end:639 pic:3' GACATGCTCACGAGACGGATTT 5'& |.|.|| | | ||||||| &5' ----ATGGGT-C-CAGCCTAAA 3' Ubl4b mmu-miR-1949 beg:225 end:242 pic:3' TTGATACGACTGTAGG-ACCATATC 5'& ||.| || ||||||. &5' --------TGGC--CCATGGTATG- 3' Ubl4b mmu-miR-1955 beg:526 end:545 pic:3' TTTTCGACGTCACG--TAGGACCCTGA 5'& .| || .|||||||.|| &5' ---------GG-GCCAGTCCTGGGGCT 3' Ubl4b mmu-miR-1961 beg:292 end:305 pic:3' AAGATTGATG-ATGGAGT 5'& .| |.||||| &5' --------GCATGCCTCA 3' Ubl4b mmu-miR-1969 beg:296 end:319 pic:3' TGG-GTACAATTTCAGAGGTAGAA 5'& .|| || ||||||||||| &5' GCCTCAGAG-AAAGTCTCCAT--- 3' Ubl4b mmu-miR-1971 beg:617 end:636 pic:3' AGAG---TCGGGTCGGAAATG 5'& ||| .|.||||||| &5' -CTCATGGGTCCAGCCT---- 3' Ubl4b mmu-miR-1981 beg:616 end:636 pic:3' CGGTGCAG-ATTCGGGTCGGAAATG 5'& .||| || |..|.||||||| &5' -TCAC-TCATGGGTCCAGCCT---- 3' Ubl4b mmu-miR-1982star beg:27 end:53 pic:3' GGAGGGGTCCTGG----GAGGGTT 5'& |.||||| ||||. ||.|.| &5' CTTCCCCTGGACTGACTCTTCTA- 3' Ubl4b mmu-miR-2145 beg:444 end:468 pic:3' TTGGTCCGGGC---TGGGACGA 5'& |.|. ||||| .||||||| &5' AGCT-GGCCCTGCTGCCCTGCT 3' Ubl4b mmu-miR-218-1star beg:36 end:57 pic:3' CCACGAACTGCCTTGGTACAAA 5'& | |||| |.||||| &5' ---GACTGACTCTTCTATGTT- 3' Ubl4b mmu-miR-219 beg:237 end:256 pic:3' TCTTAACGCAAA-CCTGTTAGT 5'& ||| |||||.||| &5' -----TGCTATAGGGACAGTCA 3' Ubl4b mmu-miR-223 beg:35 end:46 pic:3' ACCCCATAAACTGTTTGACTGT 5'& ..|||||| &5' -------------GGACTGAC- 3' Ubl4b mmu-miR-27astar beg:346 end:366 pic:3' ACGAGTGTTCGTCG-ATTCGGGA 5'& ||| |||. |.||||| &5' -----ACAGACAGTGTGAGCCC- 3' Ubl4b mmu-miR-301b beg:83 end:101 pic:3' CGAAACTGTTATGGTAACGTGAC 5'& ||| . .|||||.| &5' ----TGATGGA---GTTGCATT- 3' Ubl4b mmu-miR-302c beg:402 end:421 pic:3' GGTGACTTTGTACCTTCGTGAA 5'& ||.| . ||||||.|| &5' -----GAGAGGAGGAAGCGCT- 3' Ubl4b mmu-miR-3099star beg:118 end:143 pic:3' GTTCC-CGACCTTCCTTCGACC 5'& .||| |||||||| | |||| &5' TAAGTAGCTGGAAGATATCTGG 3' Ubl4b mmu-miR-31 beg:93 end:114 pic:3' GTCGAT-ACGGTCGTAGAACGGA 5'& || ||.| ||||||. &5' --GCATTTGTCCT--TCTTGCT- 3' Ubl4b mmu-miR-31 beg:1 end:23 pic:3' GTC-GATACGGTCGTAGAACGGA 5'& .| ||.| || | ||||||. &5' -GGCCTGT-CCTTC-TCTTGCT- 3' Ubl4b mmu-miR-31 beg:279 end:303 pic:3' GTCGATACGG--TCGTAGAACGGA 5'& ||||| |||| |||| ||||| &5' CAGCTTTGCCAAAGCA---TGCCT 3' Ubl4b mmu-miR-324-3p beg:527 end:551 pic:3' TC-GTCGTGGACCCCGT-CACC 5'& .| |||. |||||||| |||| &5' GGCCAGT-CCTGGGGCTTGTGG 3' Ubl4b mmu-miR-337-3p beg:115 end:133 pic:3' TCCGTAGTATATCCTCGACTT 5'& |.|.| || |||||.| &5' ---CGTTA---AGTAGCTGGA 3' Ubl4b mmu-miR-3473 beg:195 end:211 pic:3' CCGACTCGGTAGAGAGGT 5'& || |||||||||. &5' -GCA---CCATCTCTCT- 3' Ubl4b mmu-miR-34a beg:406 end:425 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& .| .| |.|||||| &5' ------GGAGGAAGCGCTGCCA 3' Ubl4b mmu-miR-378 beg:613 end:633 pic:3' GGAAGACTGAG-GTTCAGGTCA 5'& || |||| ...|||||| &5' ----CTCACTCATGGGTCCAG- 3' Ubl4b mmu-miR-450b-5p beg:590 end:613 pic:3' ATAAGTCCTTGTAT---GACGTTTT 5'& |||||| |||.||| &5' ----CAGGAAAAAAGGTCTGTAAA- 3' Ubl4b mmu-miR-465a-5p beg:640 end:662 pic:3' AGTGTAGTCACGGTAA-GATTTAT 5'& .|.| |||| ||||||| &5' ----GTTA-TGCCCACCCTAAATA 3' Ubl4b mmu-miR-465b-5p beg:640 end:662 pic:3' GTCTAGT-CGTGGTAAGATTTAT 5'& .|.| || ||| ||||||| &5' ---GTTATGC-CCACCCTAAATA 3' Ubl4b mmu-miR-465c-5p beg:640 end:662 pic:3' GTCTAGT-CGCGGTAAGATTTAT 5'& .|.| || ||| ||||||| &5' ---GTTATGC-CCACCCTAAATA 3' Ubl4b mmu-miR-488star beg:124 end:143 pic:3' AACTCTCACGATA----ATAGACCC 5'& |||. ||||||| &5' --------GCTGGAAGATATCTGG- 3' Ubl4b mmu-miR-491 beg:298 end:319 pic:3' GGAGTACCTTCCCAAGGGGTGA 5'& ||||| ||| ||.|||. &5' CCTCAGAGAAAG--TCTCCAT- 3' Ubl4b mmu-miR-539 beg:57 end:73 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& || |||||.||. &5' ---------GGGCAATTTTTCT 3' Ubl4b mmu-miR-544 beg:171 end:191 pic:3' CTCGAACGATTTTTACGTCTTA 5'& ||| || .||.|||||||| &5' ---CTT-CT-GAAGTGCAGAAT 3' Ubl4b mmu-miR-669g beg:341 end:360 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& |||. ||| |||.||. &5' ------TCAGAACAGACAGTGT- 3' Ubl4b mmu-miR-673-3p beg:20 end:41 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||| ||||. |||.||| &5' ----CACTAAACTTC-CCCTGGA 3' Ubl4b mmu-miR-684 beg:499 end:521 pic:3' AACTGAACT---TCCCTTTTGA 5'& ||| || |||||||.| &5' --GACAGGAGCTAGGGAAAGC- 3' Ubl4b mmu-miR-686 beg:258 end:284 pic:3' AGAAGTGGC----AGAC-C-CTTCGTTA 5'& |||||| |||| | |.||||. &5' --TTCACCCTGGCTCTGAGTGGAGCAG- 3' Ubl4b mmu-miR-691 beg:582 end:599 pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& |.| || |||||| &5' ------GTC-CTAGACAGGAA- 3' Ubl4b mmu-miR-744 beg:445 end:467 pic:3' ACGACAATCGGGAT--CGGGGCGT 5'& |||| |||||. ||||.|| &5' -GCTG---GCCCTGCTGCCCTGC- 3' Ubl4b mmu-miR-760 beg:372 end:394 pic:3' AGGGGTGTC-TGGGTCTCGGC 5'& |||.| .|| ||||||| || &5' TCCTCTTAGAACCCAGATCC- 3' Ubl4b mmu-miR-761 beg:440 end:462 pic:3' ACACAGTCAAAGTGGGACGACG 5'& ||| || | .||||||||| &5' -GTGA-AGC-TGGCCCTGCTGC 3' Ubl4b mmu-miR-762 beg:617 end:636 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& ||| .|| .||||||. &5' -CTCA----TGGGTCCAGCCT- 3' Ubl4b mmu-miR-763 beg:414 end:429 pic:3' CGGTGACCAAGAAGGGTCGACC 5'& |.||| ||||||| &5' --CGCTG-------CCAGCTG- 3' Ubl4b mmu-miR-770-3p beg:599 end:621 pic:3' GGTCGAGGTGCAGTCCGGGTGC 5'& || || . |||.||| &5' --AGGTCTGTAAATGGCTCAC- 3' Ubl4b mmu-miR-871 beg:124 end:145 pic:3' GTACTGACCGTGATTAGACTTAT 5'& .|||| |||||.|| &5' ----GCTGGAAGATATCTGGAT- 3' Ubl4b mmu-miR-876-3p beg:317 end:338 pic:3' ACTTAATGAAACA---TTTGGTGAT 5'& .||| .|.||||| &5' ------GCTTGAGACAGAGCCACT- 3' Ubl4b mmu-miR-877 beg:68 end:87 pic:3' GGGACGCGGTAGAGGAGATG 5'& |.|| .||. |||||| &5' CTCTTTGCTTTCTCCT---- 3' Ubl4b mmu-miR-877 beg:191 end:213 pic:3' GGGA-CGCGGTAGAGGAGATG 5'& .|| || |||||| ||||.| &5' -TCTAGCACCATCT-CTCTGC 3' Ubl4b mmu-miR-877 beg:32 end:54 pic:3' GGGACGC-GGTAGAGGAGATG 5'& ||||| | |.. |||.||||. &5' CCCTG-GACTGACTCTTCTAT 3' Ubl4b mmu-miR-880 beg:72 end:95 pic:3' AGATGAGTCTCTCCTACCTCAT 5'& |.|.||. |||||||| &5' TTTGCTTTCTCCTGATGGAGT- 3' Ubl4b mmu-miR-881star beg:200 end:212 pic:3' TCTACACTGACAATAGAGAGAC 5'& ||||||||| &5' -------------ATCTCTCTG 3' Ubl4b mmu-miR-98 beg:288 end:305 pic:3' TTGTTATGTTGAATGATGGAGT 5'& ||| |.||||| &5' -------CAAAGCA-TGCCTCA 3' Ubl4b mmu-miR-99bstar beg:489 end:512 pic:3' GCCTGG-GTGTCTGTGCTCGAAC 5'& ||||| || ||||| ||||| &5' -GGACCACAGAGACAGGAGCT-- 3' Ubl4b mmu-miR-376c beg:43 end:57 pic:3' TGCACTTTAAAGGAGATACAA 5'& ||.|||||||| &5' ----------TCTTCTATGTT 3' Ubl4b mmu-miR-455 beg:30 end:44 pic:3' CACATATACGGGCACCTGACG 5'& ||| ||||||| &5' ---------CCCCTGGACTG- 3' Ubl4b mcmv-miR-m01-2 beg:1 end:20 pic:3' TGGCAAGGTTGGGCT--AAGAGAAG 5'& . .||.| ||||||| &5' ------TTGGCCTGTCCTTCTCTT- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubl4b RAID00073329 mmu-miR-382-3p miRNA MIMAT0004691 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID00620717 mmu-miR-7214-3p miRNA MIMAT0028397 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID00849671 mmu-miR-6416-3p miRNA MIMAT0025171 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID00930660 mmu-miR-182-5p miRNA MIMAT0000211 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID00944982 mmu-miR-376c-3p miRNA MIMAT0003183 Ubl4b mRNA 67591 Prediction 0.2202 Ubl4b RAID01273393 mmu-miR-7118-5p miRNA MIMAT0028133 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID01372770 mmu-miR-544-3p miRNA MIMAT0004941 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID01527212 mmu-miR-326-3p miRNA MIMAT0000559 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID01563832 mmu-miR-665-5p miRNA MIMAT0017238 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID01634717 mmu-miR-330-5p miRNA MIMAT0004642 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID01644797 mmu-miR-7679-3p miRNA MIMAT0029873 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID01764306 mmu-miR-6418-5p miRNA MIMAT0025173 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID02400612 mmu-miR-3105-5p miRNA MIMAT0014941 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID02475913 mmu-miR-1896 miRNA MIMAT0007873 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID02505588 mmu-miR-6969-5p miRNA MIMAT0027840 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID02586459 mmu-miR-193b-3p miRNA MIMAT0004859 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID02599226 mmu-miR-7049-5p miRNA MIMAT0028002 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID02867655 mmu-miR-7050-5p miRNA MIMAT0028004 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID02869337 mmu-miR-1249-5p miRNA MIMAT0014804 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID02935402 mmu-miR-291a-3p miRNA MIMAT0000368 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID03084948 mmu-miR-295-3p miRNA MIMAT0000373 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID03159512 mmu-miR-342-3p miRNA MIMAT0000590 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID03294910 mmu-miR-193a-3p miRNA MIMAT0000223 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID03603855 mmu-miR-8116 miRNA MIMAT0031422 Ubl4b mRNA 67591 Prediction 0.1828 Ubl4b RAID03681362 mmu-miR-302d-3p miRNA MIMAT0003377 Ubl4b mRNA 67591 Prediction 0.1828