iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

PPI - IID
Symbol 1	Symbol 2	PMID	DBs	Evidence Type	Adipose Tissue	Adrenal Gland	Amygdala	Bone	Bone Marrow	Brain	Dorsal Root Ganglia	Eye	Heart	Hindgut	Hypothalamus	Kidney	Liver	Lung	Lymph Nodes	Mammary Gland	Midgut	Neurons	Ovary	Pancreas	Pituitary Gland	Placenta	Prostate	Salivary Gland	Skeletal Muscle	Small Intestine	Spleen	Stomach	Testes	Uterus
Rlim	Incenp	22596162	dip	exp				G	G	G				G					G	G	G	G	G					G		G	G	G	G	G
Taf10	Rlim	22596162	dip	exp	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Zfp42	Rlim	22596162	biogrid,dip	exp																						G							G
Ints1	Rlim	22596162	dip	exp	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Plekhg3	Rlim	22596162	dip	exp
Yy1	Rlim	22596162	dip	exp	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Polr2b	Rlim	22596162	dip	exp	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ezh2	Rlim	22596162	dip	exp	G	G		G	G			G	G	G				G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G
Wdr76	Rlim	22596162	dip	exp
Unk	Rlim	25737280	biogrid	exp, ortho	G	G	G	G	G	G		G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G
Ldb2	Rlim	17848518	dip	exp, ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G		G	G		G
Rlim	Lhx2			ortho			G			G		G										G			G	G
Terf1	Rlim			ortho	G	G		G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G
Ldb1	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Ube2e2	Rlim			ortho	G	G	G			G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2o	Rlim			ortho	G	G	G	G	G	G	G	G	G		G			G		G		G	G	G	G	G		G	G		G	G	G	G
Ss18l1	Rlim			ortho
Ube2d2b	Rlim			ortho																													G
Smurf2	Rlim			ortho
Esr1	Rlim			ortho	G																		G		G				G					G
Isl1	Rlim			ortho		G				G	G	G			G							G		G	G		G					G
Lhx1	Rlim			ortho											G	G
Lhx3	Rlim			ortho					G															G	G			G
Siah1a	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Lmo2	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Sin3a	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2d3	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Stat6	Rlim			ortho	G	G		G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Ubc	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Snx17	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Pdlim1	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Rexo1	Rlim			ortho	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Rps14	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Limk1	Rlim			ortho		G	G			G	G	G			G			G	G			G		G	G	G					G		G
Stmn1	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2d1	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Tnfaip3	Rlim			ortho										G					G		G									G	G
Rlim	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e1	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Hdac2	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Lnx2	Rlim			ortho	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ubxn1	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2d2	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Tollip	Rlim			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

PPI - iRefIndex
UniProt A	UniProt B	Method	PMID	Interaction Type	Edge type	Num Participants
Q9WTV7		affinity chromatography technology	22596162	physical association	X	2
Q9WTV7		affinity chromatography technology	22596162	physical association	X	2
Q9WTV7		affinity chromatography technology	22596162	physical association	X	2
Q9WTV7		affinity chromatography technology	15761153	physical association	X	2
Q9WTV7	Q8CFI7	anti tag coimmunoprecipitation	22596162	physical association	X	2
Q9WTV7	Q9WU62	anti tag coimmunoprecipitation	22596162	physical association	X	2
	Q9WTV7	anti tag coimmunoprecipitation	22596162	-	C	3
	Q9WTV7	anti bait coimmunoprecipitation	17848518	-	C	3
	Q9WTV7	anti tag coimmunoprecipitation	22596162	-	C	9
Q9WTV7	O55203	anti bait coimmunoprecipitation	17848518	physical association	X	2
Q9WTV7	O55203	pull down	17848518	physical association	X	2
Q9WTV7	P22227	anti bait coimmunoprecipitation	22596162	direct interaction	X	2
Q9WTV7	P22227	pull down	22596162	direct interaction	X	2
Q9WTV7	P22227	anti tag coimmunoprecipitation	22596162	direct interaction	X	2
Q9WTV7	P22227	anti tag coimmunoprecipitation	22596162	direct interaction	X	2
Q9WTV7	P22227	pull down	22596162	direct interaction	X	2
Q9WTV7	P22227	anti tag coimmunoprecipitation	22596162	direct interaction	X	2
Q9WTV7	P22227	anti tag coimmunoprecipitation	22596162	direct interaction	X	2
Q9WTV7	P22227	anti tag coimmunoprecipitation	22596162	direct interaction	X	2
Q9WTV7	Q00899	anti tag coimmunoprecipitation	22596162	physical association	X	2
Q9WTV7	Q8K0H5	anti tag coimmunoprecipitation	22596162	physical association	X	2
Q9WTV7		anti tag coimmunoprecipitation	22596162	physical association	X	2
Q9WTV7	Q6P4S8	anti tag coimmunoprecipitation	22596162	physical association	X	2
Q9WTV7	Q4VAC9	anti tag coimmunoprecipitation	22596162	physical association	X	2
Q9WTV7	A6PWY4	anti tag coimmunoprecipitation	22596162	physical association	X	2

PPI - HINT
Gene A	Gene B	PMID	Method	Quality
WDR76	RLIM	22596162	0007	LC
LDB2	RLIM	17848518,17848518	0096,0006	LC
ZFP42	RLIM	22596162,22596162,22596162,22596162	0006,0004,0007,0096	LC
YY1	RLIM	22596162	0007	LC
PLEKHG3	RLIM	22596162	0007	LC
EZH2	RLIM	22596162	0007	LC
INTS1	RLIM	22596162	0007	LC
POLR2B	RLIM	22596162	0007	LC
TAF10	RLIM	22596162	0007	LC
RLIM	INCENP	22596162	0007	LC

PPI - Mentha
Protein A	Protein B	Gene A	Gene B	Score	PMID
Q9WTV7	Q9HCE7	RLIM	SMURF1	0.126	15761153
Q9WTV7	Q8BL48	RLIM	UNK	0.126	25737280
Q9WTV7	O55203	RLIM	LDB2	0.236	17848518
Q9WTV7	P22227	RLIM	ZFP42	0.376	22596162