DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT593681 mmu-miR-467e-5p Mus musculus Sh3rf2 269016 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080 MIRT593683 mmu-miR-467b-5p Mus musculus Sh3rf2 269016 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080 MIRT593682 mmu-miR-467h Mus musculus Sh3rf2 269016 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004530 mmu-miR-127* 269016 Sh3rf2 uagUCUCGGGAGACUCGA-AGUc | ||||| :| |||| ||| aagACAGCCCAUU-AGCUCUCAu 2 20 1349 1370 [mm9:18:42317230-42317251:+] 0.6745 125 0 -13.90 -1.0454 MIMAT0000230 mmu-miR-199a-3p 269016 Sh3rf2 auUGGUUACACGUCUGAUGACa ||:| | || ||||||| ccACUACAG-ACAUACUACUGu 2 21 62 82 [mm9:18:42315943-42315963:+] 0.6201 150 7 -13.64 -0.6882 MIMAT0004547 mmu-miR-203* 269016 Sh3rf2 acAACUUGACAG-UUCUU-GGUGa |||||| || :|||| |||| uuUUGAACAUUCUGAGAACCCACu 2 21 616 639 [mm9:18:42316497-42316520:+] 0.5597 135 0 -18.26 -0.2558 MIMAT0004547 mmu-miR-203* 269016 Sh3rf2 acaacUUGACA-GUUCUUG-GUGa :||||| | ||||| ||| gcccuGACUGUCCUAGAACUCACu 2 18 172 195 [mm9:18:42316053-42316076:+] 0.4881 128 0 -20.35 -0.1018 MIMAT0000240 mmu-miR-207 269016 Sh3rf2 cucccUCCUCUCGGU-------CCUCUUCg |||| ||||| ||||||| aagucAGGACAGCCAUUAAGAUGGAGAAGu 2 19 1765 1794 [mm9:18:42317646-42317675:+] 0.5742 149 7 -24.88 -0.6630 MIMAT0004572 mmu-miR-290-3p 269016 Sh3rf2 cccgaauuUUGAUCCGCC-GUGAAa | ||| |:|| ||||| acauguccAUCUAUGUGGACACUUu 2 17 1402 1426 [mm9:18:42317283-42317307:+] 0.6229 124 0 -14.72 -0.4549 MIMAT0004573 mmu-miR-293* 269016 Sh3rf2 guuuuacagugUGUCAAACUCa | |||||||| gcugcaaagggAGAGUUUGAGg 2 12 574 595 [mm9:18:42316455-42316476:+] 0.5597 147 7 -13.78 -0.1530 MIMAT0000375 mmu-miR-297a 269016 Sh3rf2 uguACGUGUACGUGUGUAUGUa || |: ||:: ||||||| cucUGGAU-UGUGAACAUACAu 2 20 1526 1546 [mm9:18:42317407-42317427:+] 0.5826 153 7 -13.92 -0.2420 MIMAT0004583 mmu-miR-130b* 269016 Sh3rf2 ucaUCACGUUGUC--CCUU-UCUCa || | :|:|| |||| |||| aaaAGGGAGAUAGGAGGAACAGAGg 2 20 1041 1065 [mm9:18:42316922-42316946:+] 0.5013 122 0 -14.58 -0.1551 MIMAT0004630 mmu-miR-26b* 269016 Sh3rf2 cucgGUUCAU--UACCUCU-UGUCc ||:| | | ||||| |||| uaagCAGGGAGCACGGAGAGACAGa 2 19 775 799 [mm9:18:42316656-42316680:+] 0.5527 121 0 -15.77 -0.6141 MIMAT0004631 mmu-miR-29a* 269016 Sh3rf2 gaCUUGUGGUUUUCUUUAGUCa | |::|| | |||||||| guGUAUGCC--AUGAAAUCAGc 2 21 1724 1743 [mm9:18:42317605-42317624:+] 0.5826 153 7 -16.34 -0.1071 MIMAT0000578 mmu-miR-337-3p 269016 Sh3rf2 uccguaGUAUAUCCUCGACUu || : ||||||||| uauggaCAAGAAGGAGCUGAa 2 16 1087 1107 [mm9:18:42316968-42316988:+] 0.5013 155 7 -19.54 -0.2002 MIMAT0000605 mmu-miR-350 269016 Sh3rf2 cuuuCACAUACCCGAA-ACACUu || || |||| ||||| uguuGUUCCUGCGCUUGUGUGAg 2 19 1689 1711 [mm9:18:42317570-42317592:+] 0.5826 122 0 -12.49 -0.3824 MIMAT0000605 mmu-miR-350 269016 Sh3rf2 cuuucacauacccgaAACACUu |||||| cauuaaauguaauugUUGUGAc 2 8 1368 1389 [mm9:18:42317249-42317270:+] 0.6745 120 6 -7.25 -0.1158 MIMAT0000650 mmu-miR-17* 269016 Sh3rf2 gaUGUUCACGGGAGUGAC-GUCa :||| ||::: ||||| ||| aaGCAA-UGUUUACACUGACAGa 2 21 1157 1178 [mm9:18:42317038-42317059:+] 0.5013 126 0 -16.79 -0.2369 MIMAT0004660 mmu-miR-19a* 269016 Sh3rf2 cauCACGUUGAUAC--GUUUUGAu ||| |: | | ||||||| gccGUGGAGAAAGGGUCAAAACUa 2 20 1202 1225 [mm9:18:42317083-42317106:+] 0.5540 146 7 -12.37 -0.4446 MIMAT0004663 mmu-miR-200c* 269016 Sh3rf2 gguUUGUGACGACCCAUUCUGc || |: | ||||||| auuAAGAUGGAGAAGUAAGACa 2 20 1779 1800 [mm9:18:42317660-42317681:+] 0.5742 143 7 -11.01 -0.7156 MIMAT0004667 mmu-miR-199b 269016 Sh3rf2 auUGGUUACACGUCUGAUGACa ||:| | || ||||||| ccACUACAG-ACAUACUACUGu 2 21 62 82 [mm9:18:42315943-42315963:+] 0.6201 150 7 -13.64 -0.6882 MIMAT0000742 mmu-miR-378* 269016 Sh3rf2 uguguccuGGACCUCAGUCCUc |:|| |||||||| ucugccuuCUUGAAGUCAGGAc 2 15 1753 1774 [mm9:18:42317634-42317655:+] 0.5742 158 7 -17.83 -0.2347 MIMAT0000745 mmu-miR-380-3p 269016 Sh3rf2 uucuACACCUGGUA--UG-AUGUAu | ||||:::| || ||||| ggucUCUGGAUUGUGAACAUACAUc 2 19 1523 1547 [mm9:18:42317404-42317428:+] 0.5826 121 0 -12.22 -0.3612 MIMAT0002111 mmu-miR-470 269016 Sh3rf2 ugaGUGGUCACGGUCAGGU-UCUu :|:|| :|| |||| ||| ccaUAUCAUCUUCACUCCACAGAg 2 21 539 562 [mm9:18:42316420-42316443:+] 0.5597 120 0 -15.62 -0.2855 MIMAT0003127 mmu-miR-484 269016 Sh3rf2 uagcccuccccugaCUCGGACu ||||||| acuccaaagccagaGAGCCUGa 2 9 673 694 [mm9:18:42316554-42316575:+] 0.5597 140 7 -15.20 -0.4138 MIMAT0003173 mmu-miR-547 269016 Sh3rf2 gaguGAGUUUCU--AC-AUGGUUc ||:|:||| || |||||| gcuuCUUAGAGAACUGUUACCAAa 2 18 1000 1023 [mm9:18:42316881-42316904:+] 0.5226 128 6 -17.45 -0.3938 MIMAT0003186 mmu-miR-369-3p 269016 Sh3rf2 uuUCUAGUUGGUA-CAUAAUAa ||: :: :|| ||||||| aaAGGAUGUGUAUGGUAUUAUa 2 20 801 822 [mm9:18:42316682-42316703:+] 0.5527 146 7 -9.30 -0.4374 MIMAT0004788 mmu-miR-20b* 269016 Sh3rf2 gaUCUUCACGAGUGUGAC-GUCa || | ||:|:|||||| ||| gaAGCAAUGUUUACACUGACAGa 2 21 1156 1178 [mm9:18:42317037-42317059:+] 0.5013 140 0 -21.39 -0.2348 MIMAT0003190 mmu-miR-291b-3p 269016 Sh3rf2 uguUUGUUUU-ACCUAC-GUGAAa | :||:: |||:|| ||||| gcuACUAAGGCUGGGUGCCACUUa 2 20 1445 1468 [mm9:18:42317326-42317349:+] 0.5714 126 0 -15.60 -0.5773 MIMAT0004820 mmu-miR-744* 269016 Sh3rf2 ucCAACUCCAAUCACC-GUUGUc ||| | |||| || ||||| agGUU--GUUUAGAGGACAACAg 2 21 2011 2031 [mm9:18:42317892-42317912:+] 0.5471 125 0 -22.62 -0.1344 MIMAT0003732 mmu-miR-668 269016 Sh3rf2 ccaucacccGGCUCGGCUCACUGu | || ||||||| ccacugaaaCGGAAGAGAGUGACu 2 16 635 658 [mm9:18:42316516-42316539:+] 0.5597 143 7 -15.41 -0.3186 MIMAT0003897 mmu-miR-759 269016 Sh3rf2 caguuuuaacaaacGUGAGACg ||||||| acuguccuagaacuCACUCUGu 2 9 178 199 [mm9:18:42316059-42316080:+] 0.4881 140 7 -13.58 -0.2802 MIMAT0003455 mmu-miR-679 269016 Sh3rf2 ugGUUCUCAGUGGAGUGU-CAGg :|| | ||| ||||| ||| cuUAACAUUCA--UCACAUGUCc 2 21 1389 1409 [mm9:18:42317270-42317290:+] 0.6745 121 0 -15.23 -0.5034 MIMAT0003461 mmu-miR-683 269016 Sh3rf2 cuccuGUGUCGAAUGUCGUCc |||| ||||||| acacuCACA-AGGACAGCAGg 2 17 1798 1817 [mm9:18:42317679-42317698:+] 0.5742 142 7 -20.10 -0.1209 MIMAT0003461 mmu-miR-683 269016 Sh3rf2 cucCUGUGUCGAAUGU-CGUCc |||:: | |||| |||| uuaGACGUUUCCUACAGGCAGu 2 19 1494 1515 [mm9:18:42317375-42317396:+] 0.5826 122 0 -14.00 -0.2629 MIMAT0003464 mmu-miR-686 269016 Sh3rf2 agaaguggCAGACC--CUUCGUUa |||||| ||||||| auaaacagGUCUGGUUGAAGCAAu 2 15 1140 1163 [mm9:18:42317021-42317044:+] 0.5013 157 7 -20.73 -0.3709 MIMAT0003470 mmu-miR-691 269016 Sh3rf2 aaaagacggagAGAAGUCCUUa |: ||||||| gaagaguagagUUCUCAGGAAa 2 12 1114 1135 [mm9:18:42316995-42317016:+] 0.5013 143 7 -12.55 -0.4595 MIMAT0003471 mmu-miR-692 269016 Sh3rf2 cucacuccGCGAGUUUCU-CUa :||||||||| || cuaccaaaUGCUCAAAGAUGAu 2 14 701 722 [mm9:18:42316582-42316603:+] 0.5597 125 0 -17.37 -0.2849 MIMAT0003472 mmu-miR-693-5p 269016 Sh3rf2 cuuuuGAAA--GCCUACACCGAc :||| :| ||||||| uuuuuUUUUAAUGUUUGUGGCUa 2 17 1982 2004 [mm9:18:42317863-42317885:+] 0.5708 143 7 -12.03 -0.9688 MIMAT0003479 mmu-miR-669c 269016 Sh3rf2 uguGUGUAGGUGUGUGU-UGAUa | | |:||| ||| |||| ugcCUCCACUACAGACAUACUAc 2 20 57 79 [mm9:18:42315938-42315960:+] 0.6201 123 0 -13.33 -0.5537 MIMAT0003480 mmu-miR-297b-5p 269016 Sh3rf2 uguacaaguACGUGUGUAUGUa ||:: ||||||| ucucuggauUGUGAACAUACAu 2 14 1525 1546 [mm9:18:42317406-42317427:+] 0.5826 149 7 -12.68 -0.2399 MIMAT0003487 mmu-miR-697 269016 Sh3rf2 agaggUGUCCUGGUCCUACAa |||| ||||||| gagagACAGAUAAAGGAUGUg 2 17 790 810 [mm9:18:42316671-42316691:+] 0.5527 148 7 -15.00 -0.4753 MIMAT0003494 mmu-miR-704 269016 Sh3rf2 gauccucgucUCGUGUACAGa | |||||||| cuuaacauucAUCACAUGUCc 2 12 1389 1409 [mm9:18:42317270-42317290:+] 0.6745 147 7 -12.75 -0.3205 MIMAT0003498 mmu-miR-708* 269016 Sh3rf2 gaUCUUCGAGUGUCAGA-UCAAc |||: | || ||| |||| gaAGAGAGUGACUUUCUGAGUUu 2 21 646 668 [mm9:18:42316527-42316549:+] 0.5597 120 0 -9.94 -0.1301 MIMAT0003499 mmu-miR-709 269016 Sh3rf2 aggAGGACGGAGACGGAGg | | || ||||||| aaaUACAGC--CUGCCUCc 2 17 47 63 [mm9:18:42315928-42315944:+] 0.6374 141 7 -18.54 -0.2798 MIMAT0003506 mmu-miR-715 269016 Sh3rf2 gugcgccccCACACGUGCCUc | | ||||||| agauaagcaGGGAGCACGGAg 2 13 772 792 [mm9:18:42316653-42316673:+] 0.5527 144 7 -23.01 -0.2882 MIMAT0003507 mmu-miR-500 269016 Sh3rf2 acuugggaacggguCCACGUAa ||||||| aacagaggaggaauGGUGCAUg 2 9 1058 1079 [mm9:18:42316939-42316960:+] 0.5013 140 7 -12.98 -0.4614 MIMAT0003508 mmu-miR-501-5p 269016 Sh3rf2 aaaguggguccCUGUUUCCUAa ||:||||||| acggagagacaGAUAAAGGAUg 2 12 787 808 [mm9:18:42316668-42316689:+] 0.5527 151 7 -13.98 -0.3458 MIMAT0003509 mmu-miR-501-3p 269016 Sh3rf2 guuuaggaacgggcCCACGUAa ||||||| aacagaggaggaauGGUGCAUg 2 9 1058 1079 [mm9:18:42316939-42316960:+] 0.5013 140 7 -13.68 -0.4614 MIMAT0003511 mmu-miR-450b-5p 269016 Sh3rf2 auaaGUCCUUGUAUGACGUUUu || |||| :||||||| gucaCAACAACA-GCUGCAAAg 2 19 562 582 [mm9:18:42316443-42316463:+] 0.5597 156 7 -16.08 -0.1065 MIMAT0003781 mmu-miR-676* 269016 Sh3rf2 cguucAGGAU-UCCAACAUCUCa ||||: | |||||||| gagcaUCCUGUAUCUUGUAGAGc 2 18 2143 2165 [mm9:18:42318024-42318046:+] 0.5552 156 7 -19.30 -0.2809 MIMAT0004210 mmu-miR-804 269016 Sh3rf2 agguccacuccuUGUUGAGUGu | ||||||| ccugacuguccuAGAACUCACu 2 11 174 195 [mm9:18:42316055-42316076:+] 0.4881 142 7 -11.45 -0.1083 MIMAT0004210 mmu-miR-804 269016 Sh3rf2 agguCCAC-UCCUUGU-UGAGUGu || | || || | |||||| agauGGAGAAGUAAGACACUCACa 2 19 1783 1806 [mm9:18:42317664-42317687:+] 0.5742 121 6 -14.06 -0.5024 MIMAT0004838 mmu-miR-742* 269016 Sh3rf2 acuaAUCGUUGGUACACUCAu ||| |:|: ||||||| cuugUAG-AGCUUUGUGAGUg 2 18 2156 2175 [mm9:18:42318037-42318056:+] 0.5552 155 7 -16.62 -0.1642 MIMAT0004237 mmu-miR-742 269016 Sh3rf2 aaaugggucguaCCACCGAAAg ||||||||| -----uucuucgGGUGGCUUUu 2 11 1 17 [mm9:18:42315882-42315898:+] 0.6504 150 7 -17.61 -0.5424 MIMAT0004839 mmu-miR-743b-5p 269016 Sh3rf2 acuacCUGUGGUCAG-ACUUGu || :|::||| ||||| uagacGAGGCUGGUCUUGAACu 2 17 199 220 [mm9:18:42316080-42316101:+] 0.4881 124 0 -17.00 -0.1357 MIMAT0004843 mmu-miR-879* 269016 Sh3rf2 ggCUUUCGAACU-UCGGU-AUUCg |||: | || ||||| |||| uuGAAGUCAGGACAGCCAUUAAGa 2 21 1762 1785 [mm9:18:42317643-42317666:+] 0.5742 127 0 -17.05 -0.2049 MIMAT0004856 mmu-miR-105 269016 Sh3rf2 uggUG-UUCGUA-GA----CUCGUGAACc || |||::| || |:||||||| aaaACAAAGUGUGCUUGGAGGGCACUUGa 2 21 843 871 [mm9:18:42316724-42316752:+] 0.5243 149 7 -16.43 -0.1616 MIMAT0004865 mmu-miR-297c 269016 Sh3rf2 uguACAUGUACGUGUGUAUGUa || |: ||:: ||||||| cucUGGAU-UGUGAACAUACAu 2 20 1526 1546 [mm9:18:42317407-42317427:+] 0.5826 153 7 -12.68 -0.2399 MIMAT0004868 mmu-miR-343 269016 Sh3rf2 agacccGUGUAC--UUCCCUCu || || ||||||| caacaaCAGCUGCAAAGGGAGa 2 15 566 587 [mm9:18:42316447-42316468:+] 0.5597 141 7 -16.19 -0.5933 MIMAT0004868 mmu-miR-343 269016 Sh3rf2 agacccguguacUUCCCUCu ||||||| gacagagaagaaAAGGGAGa 2 9 1031 1050 [mm9:18:42316912-42316931:+] 0.5013 140 7 -13.80 -0.7994 MIMAT0004882 mmu-miR-466f-3p 269016 Sh3rf2 cacaCAUACACACACACAUAc ||: || ||||||| gauaGUG-GUUCAUGUGUAUg 2 18 1711 1730 [mm9:18:42317592-42317611:+] 0.5826 143 7 -14.12 -0.1512 MIMAT0004882 mmu-miR-466f-3p 269016 Sh3rf2 cacacauacacacACACAUAc ||||||| gacagauaaaggaUGUGUAUg 2 9 794 814 [mm9:18:42316675-42316695:+] 0.5527 140 7 -11.67 -0.3296 MIMAT0004884 mmu-miR-466h 269016 Sh3rf2 auguguGUUCGUGUACGU-GUGu :|| :|||||| ||| ugggauUAAAAGCAUGCAGCACa 2 17 253 275 [mm9:18:42316134-42316156:+] 0.4881 120 0 -15.05 -0.4975 MIMAT0004898 mmu-miR-654-3p 269016 Sh3rf2 uuccacuacCA-GUCGUCUGUAu || ::|||||||| cuauacccaGUAUGGCAGACAUa 2 14 1900 1922 [mm9:18:42317781-42317803:+] 0.5520 148 7 -14.97 -0.2808 MIMAT0004898 mmu-miR-654-3p 269016 Sh3rf2 uuccACUACC--AGUCGUCUGUAu || || |: ||||||| uaucUGUAGGCUUUUCCAGACAUu 2 19 1580 1603 [mm9:18:42317461-42317484:+] 0.5826 141 7 -10.77 -0.6104 MIMAT0004898 mmu-miR-654-3p 269016 Sh3rf2 uuccacuaccagucGUCUGUAu ||||||| gccugccuccacuaCAGACAUa 2 9 54 75 [mm9:18:42315935-42315956:+] 0.6374 140 7 -12.25 -0.8658 MIMAT0004930 mmu-miR-466d-5p 269016 Sh3rf2 guacauguacaUGCGUGUGUGu || ||||||| aucucuuacccACCCACACACu 2 12 1545 1566 [mm9:18:42317426-42317447:+] 0.5826 147 7 -12.93 -0.1863 MIMAT0004932 mmu-miR-878-5p 269016 Sh3rf2 acagaacuguaggUUGAUCUAu |||||||| gagaaagggucaaAACUAGAUg 2 10 1208 1229 [mm9:18:42317089-42317110:+] 0.5540 145 7 -12.36 -0.1386 MIMAT0004935 mmu-miR-872* 269016 Sh3rf2 uccuccgaugaCGUUAUCAAGu || ||||||| caaagaaauaaGC-AUAGUUCc 2 12 2061 2081 [mm9:18:42317942-42317962:+] 0.5552 141 7 -8.82 -0.1506 MIMAT0004862 mmu-miR-877* 269016 Sh3rf2 acccuccucccucuUCUCCUGu ||||||| caaacagguuguuuAGAGGACa 2 9 2006 2027 [mm9:18:42317887-42317908:+] 0.5471 140 7 -17.66 -0.8223 MIMAT0005831 mmu-miR-669k 269016 Sh3rf2 aacgUACGCACAUAUAC-GUAu :| | |||:|||| ||| agugGUUCAUGUGUAUGCCAUg 2 18 1714 1735 [mm9:18:42317595-42317616:+] 0.5826 125 0 -13.09 -0.4347 MIMAT0005835 mmu-miR-1-2-as 269016 Sh3rf2 acCUUACAU-UUCUUCAUACAu | :| || ||| ||||||| ugGCGUCUACAAGUAGUAUGUu 2 20 1671 1692 [mm9:18:42317552-42317573:+] 0.5826 158 7 -12.19 -0.2612 MIMAT0005842 mmu-miR-669h-3p 269016 Sh3rf2 acacguacacACAUAUAC-GUAu |||:|||| ||| uagugguucaUGUGUAUGCCAUg 2 13 1713 1735 [mm9:18:42317594-42317616:+] 0.5826 120 0 -14.88 -0.4283 MIMAT0005845 mmu-miR-466k 269016 Sh3rf2 aguguacauguacauGUGUGUGu ||||||| caucucuuacccaccCACACACu 2 9 1544 1566 [mm9:18:42317425-42317447:+] 0.5826 140 7 -13.73 -0.1811 MIMAT0005854 mmu-miR-467g 269016 Sh3rf2 uaUA-UACACACACAUA-CAUAu || | | ||||||| |||| agAUAAAGGAUGUGUAUGGUAUu 2 20 797 819 [mm9:18:42316678-42316700:+] 0.5527 126 0 -11.84 -0.4881 MIMAT0007869 mmu-miR-1899 269016 Sh3rf2 ccUUCGUCUA-AGCCGGUAG-CGa :| || || || |||||| || uaGAACA-AUCUCUGCCAUCUGCu 2 21 512 534 [mm9:18:42316393-42316415:+] 0.5535 121 0 -16.46 -0.2041 MIMAT0007875 mmu-miR-1898 269016 Sh3rf2 cuAGGGGACACUUG-GAACUGGa | |:: | |::| ||||||| ugUGCUUGGAGGGCACUUGACCa 2 21 852 874 [mm9:18:42316733-42316755:+] 0.5243 151 7 -20.31 -0.1200 MIMAT0009392 mmu-miR-1929 269016 Sh3rf2 gagaCGAGAUAUUUCAGGAUCUu || ||: | |||||||| uuuaGCCCUG-ACUGUCCUAGAa 2 20 168 189 [mm9:18:42316049-42316070:+] 0.4881 153 7 -18.94 -0.1779 MIMAT0009398 mmu-miR-1934 269016 Sh3rf2 ucUCCUGC-UUCGUCCCCUGGUCu || | | ::| | ||||||| acAGAAGGUGGGAAAAGGACCAGa 2 22 1174 1197 [mm9:18:42317055-42317078:+] 0.5276 148 7 -22.95 -0.3345 MIMAT0009399 mmu-miR-1935 269016 Sh3rf2 ucucuaggcgGUCGGAGACGGa || :||||||| cacacuagaaCAAUCUCUGCCa 2 13 507 528 [mm9:18:42316388-42316409:+] 0.5535 148 7 -17.06 -0.8084 MIMAT0009399 mmu-miR-1935 269016 Sh3rf2 ucUCUAGGCGGUCG----GAGACGGa | ||| || || ||||||| ugAAAUCAGCAUGCACAUCUCUGCCu 2 21 1734 1759 [mm9:18:42317615-42317640:+] 0.5784 147 7 -21.63 -0.4015 MIMAT0009400 mmu-miR-1936 269016 Sh3rf2 cggucaagUGUCGUCCA-GUCAAu :||| |||| ||||| cuuccacgGCAGGAGGUCCAGUUa 2 16 1957 1980 [mm9:18:42317838-42317861:+] 0.5520 127 0 -22.74 -0.5143 MIMAT0009404 mmu-miR-1940 269016 Sh3rf2 uuGACGA-GGUGGAAGAGU--CAG-GAGGUa ||||| :|| | ||| || ||||| auCUGCUAAGGCCAUAUCAUCUUCACUCCAc 2 26 528 558 [mm9:18:42316409-42316439:+] 0.5566 123 0 -21.83 -0.3555 MIMAT0009408 mmu-miR-1943 269016 Sh3rf2 agguccACGGGUCUAGGAGGGAa ||||: : ||||||| ucugccUGCCUUUG-CCUCCCUa 2 18 227 248 [mm9:18:42316108-42316129:+] 0.4881 147 7 -23.07 -0.2604 MIMAT0009422 mmu-miR-1951 269016 Sh3rf2 aucgGUGU-GGUCAGAGGUGAUg :||| || | |||||||| uaaaUACAGCCUGCCUCCACUAc 2 19 46 68 [mm9:18:42315927-42315949:+] 0.6374 161 7 -24.36 -0.1703 MIMAT0009427 mmu-miR-669n 269016 Sh3rf2 ugUGUGUAG-GUGUGUGUUUa :| : || :| ||||||| ugGCUUUUCUUAGACACAAAa 2 19 10 30 [mm9:18:42315891-42315911:+] 0.6504 145 7 -8.88 -0.6159 MIMAT0009439 mmu-miR-1966 269016 Sh3rf2 cugagAGA-GGACUCGGUC-GAGGGAa ||| |||| :: | |||||| agagaUCUGCCUGCCUUUGCCUCCCUa 2 21 222 248 [mm9:18:42316103-42316129:+] 0.4881 123 6 -21.29 -0.2694 MIMAT0009441 mmu-miR-1968 269016 Sh3rf2 ucAGGUG--GUAG-G-AAUUGUCGACGu ||||| :|| | ||||||||| acUCCACAGAGUCACAACAACAGCUGCa 2 23 552 579 [mm9:18:42316433-42316460:+] 0.5597 151 7 -26.31 -0.6665 MIMAT0009442 mmu-miR-1969 269016 Sh3rf2 uggguacaAUUUCAGAGGUAGAa | | | ||||||| aacauucaUCACAUGUCCAUCUa 2 16 1392 1414 [mm9:18:42317273-42317295:+] 0.6745 143 7 -13.09 -0.7187 MIMAT0009459 mmu-miR-1982* 269016 Sh3rf2 ggagggguccUGGGAGGGUu | ||||||| augaaaugauAACCUCCCAa 2 11 2044 2063 [mm9:18:42317925-42317944:+] 0.5298 142 7 -18.33 -0.9821 MIMAT0011217 mmu-miR-2141 269016 Sh3rf2 uugaaaagaCUGUGGAGGa | ||||||| ccaaggaugGCCACCUCCa 2 11 2080 2098 [mm9:18:42317961-42317979:+] 0.5552 142 7 -14.74 -0.3004 MIMAT0011286 mmu-miR-2182 269016 Sh3rf2 gcgcCGCACCCUUUA-CACCGCa |: | |||:| |||||| cagaGUUUUUGAAGUGGUGGCGu 2 19 1654 1676 [mm9:18:42317535-42317557:+] 0.5826 122 6 -16.85 -0.3974 MIMAT0012771 mmu-miR-432 269016 Sh3rf2 gaCGGGUG-ACUAGA--UGAGGU-UCu | |||: | |||| |||||| || aaGGCCAUAUCAUCUUCACUCCACAGa 2 22 535 561 [mm9:18:42316416-42316442:+] 0.5566 127 0 -19.80 -0.3383 MIMAT0012773 mmu-miR-767 269016 Sh3rf2 acgaGUCU-GUUGGUACCACGu |||| |: ||||||| ggaaCAGAGGAGGAAUGGUGCa 2 18 1056 1077 [mm9:18:42316937-42316958:+] 0.5013 148 7 -20.39 -0.5449 MIMAT0015640 mmu-miR-3470a 269016 Sh3rf2 ggucggaccagaUGUUUCACu |||||||| cuucuucucaaaACAAAGUGu 2 10 834 854 [mm9:18:42316715-42316735:+] 0.5385 145 7 -12.49 -0.3137 MIMAT0015641 mmu-miR-3470b 269016 Sh3rf2 ggUCGGAC-CAGA-UGUC-UCACu |||| | || | :||| |||| acAGCCAGUGUGUGGCAGUAGUGa 2 20 432 455 [mm9:18:42316313-42316336:+] 0.5535 121 0 -22.41 -0.2348 MIMAT0015646 mmu-miR-3474 269016 Sh3rf2 cuUAGGUGCAGAGGAGG-GUCCc :||| : |:| ||| |||| auGUCCCUUUUUAGUCCACAGGa 2 21 106 128 [mm9:18:42315987-42316009:+] 0.5109 120 0 -15.84 -0.2610 MIMAT0000128 mmu-miR-30a 269016 Sh3rf2 gaAGGUCAGCUCC--UACAAAUGu ||::||:|| | |||||||| ggUCUGGUUGAAGCAAUGUUUACa 2 21 1147 1170 [mm9:18:42317028-42317051:+] 0.5013 167 7 -20.95 -0.3666 MIMAT0000130 mmu-miR-30b 269016 Sh3rf2 ucGACUCACAUC-CUACAAAUGu |||: || || |||||||| guCUGGUUGAAGCAAUGUUUACa 2 21 1148 1170 [mm9:18:42317029-42317051:+] 0.5013 163 7 -17.81 -0.3725 MIMAT0004528 mmu-miR-125a-3p 269016 Sh3rf2 ccGA-GGGUUCUUGGAGUG-GACa || :|| |||| ||||| ||| gaCUGUCCUAGAA-CUCACUCUGu 2 21 177 199 [mm9:18:42316058-42316080:+] 0.4881 129 0 -22.34 -0.1672 MIMAT0000142 mmu-miR-9 269016 Sh3rf2 aguAUGUCGAUCUAUUGGUUUCu || || :| ||||||| ucuUAGAGAACUGUUACCAAAGa 2 21 1003 1025 [mm9:18:42316884-42316906:+] 0.5226 148 7 -13.84 -0.7310 MIMAT0000155 mmu-miR-142-3p 269016 Sh3rf2 aggUAUUUCAUCCUU-UGUGA-UGu ||::|| || || ||||| || aagAUGGAGAAGUAAGACACUCACa 2 21 1782 1806 [mm9:18:42317663-42317687:+] 0.5742 131 0 -15.72 -0.4955 MIMAT0000158 mmu-miR-146a 269016 Sh3rf2 uuggguacCUUAAGUCAAGAGu ||:| ||||||| ggcgggaaGAGUAGAGUUCUCa 2 15 1109 1130 [mm9:18:42316990-42317011:+] 0.5013 150 7 -16.50 -0.1740 MIMAT0000164 mmu-miR-154 269016 Sh3rf2 gcuuccGUUGUGCCUAUUGGAu ::| |: |||||||| ugccuaUGAAAU-GAUAACCUc 2 17 2039 2059 [mm9:18:42317920-42317940:+] 0.5298 146 7 -11.20 -0.1204 MIMAT0000165 mmu-miR-155 269016 Sh3rf2 ugGGGAUAGUGUUAAU-CGUAAUu |:| | |::|| | |||||| ugCUCAAAGAUGAUCAUGCAUUAa 2 22 709 732 [mm9:18:42316590-42316613:+] 0.5597 125 6 -10.50 -0.4724 MIMAT0000224 mmu-miR-194 269016 Sh3rf2 agguGUACCUCAACGACAAUGu | | ||| ||||||| gcuuCUUAGAG-AACUGUUACc 2 19 1000 1020 [mm9:18:42316881-42316901:+] 0.5439 144 7 -11.55 -0.2101 MIMAT0000237 mmu-miR-204 269016 Sh3rf2 ucCGUAUC-CUACUGUUUCCCUu | | || || || ||||||| guGGACAGAGAAGA-AAAGGGAg 2 21 1028 1049 [mm9:18:42316909-42316930:+] 0.5013 153 7 -16.26 -0.2894 MIMAT0000248 mmu-miR-30e 269016 Sh3rf2 gaAGGUCAGUUCC--UACAAAUGu ||::||::| | |||||||| ggUCUGGUUGAAGCAAUGUUUACa 2 21 1147 1170 [mm9:18:42317028-42317051:+] 0.5013 163 7 -18.54 -0.3725 MIMAT0000366 mmu-miR-290-5p 269016 Sh3rf2 uuucacgggggUAUCAAACUCa | |||||||| gcugcaaagggAGAGUUUGAGg 2 12 574 595 [mm9:18:42316455-42316476:+] 0.5597 147 7 -12.38 -0.1575 MIMAT0000369 mmu-miR-292-5p 269016 Sh3rf2 guUUUCUCGGGGGUCAAACUCa ||||:| |||||||| gcAAAGGG---AGAGUUUGAGg 2 21 577 595 [mm9:18:42316458-42316476:+] 0.5597 148 7 -16.19 -0.1530 MIMAT0000514 mmu-miR-30c 269016 Sh3rf2 cgacuCUCACAUC-CUACAAAUGu |: || || |||||||| ggucuGGUUGAAGCAAUGUUUACa 2 19 1147 1170 [mm9:18:42317028-42317051:+] 0.5013 153 7 -15.63 -0.3725 MIMAT0000515 mmu-miR-30d 269016 Sh3rf2 gaAGGUCAGC--CCCUACAAAUGu ||::||:| | |||||||| ggUCUGGUUGAAGCAAUGUUUACa 2 21 1147 1170 [mm9:18:42317028-42317051:+] 0.5013 159 7 -18.82 -0.3695 MIMAT0000538 mmu-miR-31 269016 Sh3rf2 guCGAUACGGUCGUAGA-ACGGa || ||| || ||||| |||| caGC-AUG-CA-CAUCUCUGCCu 2 21 1740 1759 [mm9:18:42317621-42317640:+] 0.5784 122 0 -23.30 -0.2700 MIMAT0000548 mmu-miR-322 269016 Sh3rf2 aggUUUUGUACUUAACGAC-GAc |:|:| ||| ||||| || cagAGAGCCUGA--UGCUGACUa 2 20 683 703 [mm9:18:42316564-42316584:+] 0.5597 120 0 -11.38 -0.3406 MIMAT0000559 mmu-miR-326 269016 Sh3rf2 ugaccucCUUCC--CGGGUCUCc ||| | ||||||| cagaacuGAAUGCUUCCCAGAGc 2 15 2124 2146 [mm9:18:42318005-42318027:+] 0.5552 141 7 -15.75 -0.2655 MIMAT0004642 mmu-miR-330 269016 Sh3rf2 cgGAUUCUGUGUCCGGGUCUCu ||:| |::| ||||||| aaCUGA-AUGC-UUCCCAGAGc 2 21 2127 2146 [mm9:18:42318008-42318027:+] 0.5552 144 7 -16.94 -0.2655 MIMAT0000590 mmu-miR-342-3p 269016 Sh3rf2 ugcccACGCUAAAGACACACUCu |||| | |||||||| guuccUGCGCU---UGUGUGAGa 2 19 1693 1712 [mm9:18:42317574-42317593:+] 0.5826 150 7 -20.49 -0.6748 MIMAT0000597 mmu-miR-346 269016 Sh3rf2 ucuccguccGUGAGCCCGUCUGu || | ||||||| cucuauaccCAGUAUGGCAGACa 2 15 1898 1920 [mm9:18:42317779-42317801:+] 0.5520 146 7 -16.64 -0.8868 MIMAT0000668 mmu-miR-211 269016 Sh3rf2 uccGUUUCCUACUGUUUCCCUu ||:| || || ||||||| ggaCAGA-GAAGA-AAAGGGAg 2 20 1030 1049 [mm9:18:42316911-42316930:+] 0.5013 155 7 -17.61 -0.2894 MIMAT0000671 mmu-miR-224 269016 Sh3rf2 uuGCCUUGGUGAUCACUGAAu :| ||::::| ||||||| aaUGUAAUUGUU-GUGACUUa 2 20 1373 1392 [mm9:18:42317254-42317273:+] 0.6745 153 7 -16.88 -1.1750 MIMAT0000671 mmu-miR-224 269016 Sh3rf2 uuGCCUUGGUGAUCACUGAAu ||||| : |||||||| aaCGGAA--GAGAGUGACUUu 2 20 642 660 [mm9:18:42316523-42316541:+] 0.5597 152 7 -20.53 -0.1514 MIMAT0000741 mmu-miR-377 269016 Sh3rf2 uguuuucaACGGAAACACACUa ||| |||||||| guuguuccUGCGCUUGUGUGAg 2 15 1690 1711 [mm9:18:42317571-42317592:+] 0.5826 154 7 -14.33 -0.2734 MIMAT0004745 mmu-miR-384-5p 269016 Sh3rf2 uguAACGGAUCCUUAACAAAUGu | |:: | | | ||||||| gucUGGUUGAAGCAAUGUUUACa 2 21 1148 1170 [mm9:18:42317029-42317051:+] 0.5013 152 7 -15.39 -0.3754 MIMAT0001076 mmu-miR-384-3p 269016 Sh3rf2 uaacaCUUGU-UAAAGA-UCCUUa ||::| | |||| ||||| gggaaGAGUAGAGUUCUCAGGAAa 2 18 1112 1135 [mm9:18:42316993-42317016:+] 0.5013 124 0 -13.72 -0.5240 MIMAT0001095 mmu-miR-370 269016 Sh3rf2 ugguccaaggugggGUCGUCCg ||||||| gacacucacaaggaCAGCAGGa 2 9 1797 1818 [mm9:18:42317678-42317699:+] 0.5742 140 7 -18.38 -0.6314 MIMAT0003182 mmu-miR-494 269016 Sh3rf2 cuccaaagggcaCAUACAAAGu | ||||||| cacaaccaaccaGCAUGUUUCu 2 11 272 293 [mm9:18:42316153-42316174:+] 0.5140 142 7 -9.06 -0.1223 MIMAT0003183 mmu-miR-376c 269016 Sh3rf2 ugcACUUUAAAGG-AGAUACAa | | || ||| ||||||| ucaUCACAUGUCCAUCUAUGUg 2 19 1397 1418 [mm9:18:42317278-42317299:+] 0.6229 157 7 -11.74 -0.3470 MIMAT0004186 mmu-miR-301b 269016 Sh3rf2 cgaaacugUUAUGGU-AACG-UGAc |||:||: |||| ||| aaugcauaAAUGCCGUUUGCUACUa 2 16 1427 1451 [mm9:18:42317308-42317332:+] 0.5714 122 0 -13.41 -0.4710 MIMAT0003727 mmu-miR-374 269016 Sh3rf2 gugaauCGUCCAACAUAAUAUa |:: | |||||||| aaggauGUGUAUGGUAUUAUAg 2 17 802 823 [mm9:18:42316683-42316704:+] 0.5527 148 7 -7.93 -0.1121 MIMAT0003730 mmu-miR-592 269016 Sh3rf2 uguaGUAGCGUAUAACUGUGUUa | |: | || ||||||| guggCUUUUCUUA--GACACAAa 2 20 9 29 [mm9:18:42315890-42315910:+] 0.6504 144 7 -8.77 -0.3738 MIMAT0003889 mmu-miR-758 269016 Sh3rf2 aucaccugGUC-CAGUGUUu ||| ||||||| ucacuccaCAGAGUCACAAc 2 12 550 569 [mm9:18:42316431-42316450:+] 0.5597 146 7 -13.33 -0.2542 MIMAT0003475 mmu-miR-146b 269016 Sh3rf2 ucggauacCUUAAGUCAAGAGu ||:| ||||||| ggcgggaaGAGUAGAGUUCUCa 2 15 1109 1130 [mm9:18:42316990-42317011:+] 0.5013 150 7 -16.24 -0.1740 MIMAT0003780 mmu-miR-490 269016 Sh3rf2 guCGUACCUCAGGAGGUCCAAc ||| ||| | |||||||| agGCA-GGAAU--UCCAGGUUg 2 21 135 153 [mm9:18:42316016-42316034:+] 0.5109 155 7 -26.93 -0.1572 MIMAT0004855 mmu-miR-876-3p 269016 Sh3rf2 acuuaaUGAAACAUUU-GGUGAu |:| || :|| ||||| uugaacAUUCUGAGAACCCACUg 2 17 618 640 [mm9:18:42316499-42316521:+] 0.5597 120 0 -11.56 -0.5001 MIMAT0004936 mmu-miR-873 269016 Sh3rf2 uccucugaguguuCAAGGACg ||||||| caaguaguauguuGUUCCUGc 2 9 1680 1700 [mm9:18:42317561-42317581:+] 0.5826 140 7 -15.58 -0.3091 MIMAT0004941 mmu-miR-544 269016 Sh3rf2 cucgaACGAUUUUUAC-GUCUUa ||:| | | || ||||| agcaaUGUUUACACUGACAGAAg 2 18 1158 1180 [mm9:18:42317039-42317061:+] 0.5276 121 0 -8.34 -0.1527

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G064634 Sh3rf2 Mus musculus 269016

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Sh3rf2 mmu-miR-1930 beg:967 end:983 pic:3' TGCGACGTCCATGATACCTCCA 5'& .|| || ||||||| &5' -------GGG-ACAATGGAGG- 3' Sh3rf2 mmu-miR-767 beg:1058 end:1078 pic:3' ACGAGTCTGTTGG-TACCACGT 5'& |||| .| |||||||| &5' ----CAGAGGAGGAATGGTGCA 3' Sh3rf2 mmu-miR-2141 beg:2084 end:2098 pic:3' TTGAAAAGACT-GTGGAGGA 5'& ||. ||||||| &5' --------TGGCCACCTCC- 3' Sh3rf2 mmu-miR-1943 beg:230 end:248 pic:3' AGGTCCACGGGTCTAGGAGGGAA 5'& || ||||. ||||||| &5' -CC---TGCCTTTG-CCTCCCT- 3' Sh3rf2 mmu-miR-1935 beg:1742 end:1760 pic:3' TCTCTAGGCG-GTCGGAGACGGA 5'& .|| || .|||||||| &5' -------TGCACA-TCTCTGCCT 3' Sh3rf2 mmu-miR-1934 beg:1178 end:1198 pic:3' TCTCCTGCTTCGTCC----CCTGGTCT 5'& |.| || |||||||| &5' --------AGGTGGGAAAAGGACCAGA 3' Sh3rf2 mmu-miR-1195 beg:198 end:223 pic:3' ACTCGTCCGACCGGAGCTTGAGT 5'& || |||||||.||.|||||.| &5' -GACGAGGCTGGTCTTGAACTTA 3' Sh3rf2 mmu-miR-1195 beg:168 end:194 pic:3' ACTCGT--CCGACCGGAGCTTGAGT 5'& ||| | ||| ||| ||||||| &5' --AGCCCTGACTGTCCTAGAACTCA 3' Sh3rf2 mmu-miR-1196 beg:775 end:794 pic:3' TCCGTCTC-CGT-CCATCTAAA 5'& ||||.| ||| || ||| &5' --GCAGGGAGCACGG-AGA--- 3' Sh3rf2 mmu-miR-1196 beg:1052 end:1075 pic:3' TCC--GTCTCCGTCCAT-CTAAA 5'& ||| |||||| ||| |.| &5' AGGAACAGAGG-AGGAATGGT-- 3' Sh3rf2 mmu-miR-1197 beg:167 end:187 pic:3' TCTTCATCTGGTAC--ACAGGAT 5'& ||| || || ||||||| &5' -----TAG-CCCTGACTGTCCTA 3' Sh3rf2 mmu-miR-1839-5p beg:1750 end:1760 pic:3' GTTCTGGACAAGATAGATGGAA 5'& |||.|||| &5' --------------TCTGCCTT 3' Sh3rf2 mmu-miR-1839-5p beg:884 end:904 pic:3' GTTCTGGACAAGAT-AGATGGAA 5'& |||.| |||| |||.||| &5' --AGATC---TCTATTCTGCCT- 3' Sh3rf2 mmu-miR-1894-5p beg:967 end:989 pic:3' TCTCC-GTCCACCATCCCCTCTC 5'& .|| || ||| |||||||.| &5' --GGGACAA-TGG-AGGGGAGGG 3' Sh3rf2 mmu-miR-1898 beg:730 end:744 pic:3' CTAGGGGACACTTGGAACTGGA 5'& | .||||.|| &5' ----------GCTTCTTGGCC- 3' Sh3rf2 mmu-miR-1898 beg:854 end:874 pic:3' CTAGGGGACA-CTTG-GAACTGGA 5'& |.|| |..| ||||||| &5' -----CTTGGAGGGCACTTGACC- 3' Sh3rf2 mmu-miR-1904 beg:1108 end:1124 pic:3' GGAGGGAGGTCTCCTCGTCTTG 5'& | .|| |||.|||. &5' -------CGGGAAGAGTAGAG- 3' Sh3rf2 mmu-miR-1928 beg:1149 end:1166 pic:3' CTCGAC--CGTTACATCGA 5'& .|.|| ||||||| &5' -GGTTGAAGCAATGT---- 3' Sh3rf2 mmu-miR-1929 beg:169 end:190 pic:3' GAGACGAGATATTTCAGGATCTT 5'& || ||. ||||||||| &5' ----GCCCTGACT-GTCCTAGAA 3' Sh3rf2 mmu-miR-1929 beg:9 end:24 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |||.| ||.|||| &5' ----GCTTT------TCTTAGA- 3' Sh3rf2 mmu-miR-1934 beg:766 end:792 pic:3' TCTCCTGCTTCGTCCCCTG-GTCT 5'& || ||. |||||||| | |.|| &5' AGTAGAT-AAGCAGGGAGCACGGA 3' Sh3rf2 mmu-miR-1935 beg:219 end:244 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& |||||||.||| ||||.||||| &5' AGAGATCTGCCTGCCTTTGCCT 3' Sh3rf2 mmu-miR-1935 beg:884 end:904 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& |||||. |.| .||||||| &5' --AGATCT-CTA--TTCTGCCT 3' Sh3rf2 mmu-miR-1937a beg:246 end:260 pic:3' ACCCCCGAGCA-GGCCCTAA 5'& || |.|||||| &5' ---------GTACTGGGATT 3' Sh3rf2 mmu-miR-1938 beg:1539 end:1555 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& |||| ||..||| &5' --------TACATCTCTTACC- 3' Sh3rf2 mmu-miR-1941-3p beg:1768 end:1788 pic:3' TACCCTCTATGACGATTCTAC 5'& ||| .| .||||||| &5' ---GGACA-GCCATTAAGATG 3' Sh3rf2 mmu-miR-1944 beg:775 end:793 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& .|| |||||.||| &5' ------------GCAGGGAGCACGGAG 3' Sh3rf2 mmu-miR-1948 beg:321 end:333 pic:3' GACATGCTCACGAGACGGATTT 5'& ||||.|||. &5' -------------CTGCTTAAG 3' Sh3rf2 mmu-miR-1951 beg:50 end:69 pic:3' ATCGGTGTGGTCAGAGGTGATG 5'& |||| ..|| |||||||| &5' -AGCC-TGCC----TCCACTAC 3' Sh3rf2 mmu-miR-1953 beg:150 end:168 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& .|||| |||||.. &5' ----GGCCTTCT--CTTTCTT- 3' Sh3rf2 mmu-miR-1957 beg:1451 end:1467 pic:3' CAGTATACGAG--ATGGTGAC 5'& ||| |.||||| &5' -------GCTGGGTGCCACT- 3' Sh3rf2 mmu-miR-1957 beg:67 end:82 pic:3' CAGTATACGAGATGGTGAC 5'& | |||.|||| &5' -------GACATACTACTG 3' Sh3rf2 mmu-miR-1958 beg:151 end:168 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& || |.| |||||.| &5' -------GCCTTCTCTTTCTT- 3' Sh3rf2 mmu-miR-1961 beg:53 end:63 pic:3' AAGATTGATGATGGAGT 5'& ||.|||| &5' ---------CTGCCTC- 3' Sh3rf2 mmu-miR-1961 beg:1840 end:1856 pic:3' AAGATTGATGATGGAGT 5'& ||.||| |.||||| &5' ---TAGCTA-TGCCTCA 3' Sh3rf2 mmu-miR-1967 beg:1851 end:1881 pic:3' CGTAGAAGAGGGGTCC-----TAGGAGT 5'& || |||. |||||| ||.|||| &5' -CACCTTTACCCCAGAAAACCATTCTCA 3' Sh3rf2 mmu-miR-1968 beg:558 end:580 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& |||| || | |||||||||| &5' AGTCA--CAAC---AACAGCTGCA 3' Sh3rf2 mmu-miR-1971 beg:224 end:242 pic:3' AGAGTCGGGTCGGAAATG 5'& || |||. ||||||.| &5' --TCTGCCT-GCCTTTGC 3' Sh3rf2 mmu-miR-1981 beg:224 end:242 pic:3' CGGTGCAGATTCGGGTCGGAAATG 5'& ||| |||. ||||||.| &5' ------TCT--GCCT-GCCTTTGC 3' Sh3rf2 mmu-miR-1982.1 beg:1281 end:1303 pic:3' GACACCCTCTTGTATC-CCACTCT 5'& ||| ||. . || ||||.|| &5' ----GGGTGAGGG-AGAGGTGGGA 3' Sh3rf2 mmu-miR-1982.1 beg:1170 end:1187 pic:3' GACACCCTCTTGTATCCCACTCT 5'& .||| ||||.|| &5' ---------GACAGAAGGTGGGA 3' Sh3rf2 mmu-miR-1982star beg:2114 end:2144 pic:3' GG-AGGGGTCCTG------GGAGGGTT 5'& || |.||||| || |.|||||. &5' CCATTCCCAGAACTGAATGCTTCCCAG 3' Sh3rf2 mmu-miR-1982star beg:1853 end:1881 pic:3' GGA---GGGGTCC--TGG-GAGGGTT 5'& ||| |||||| ||| .||.|| &5' CCTTTACCCCAGAAAACCATTCTCA- 3' Sh3rf2 mmu-miR-2134 beg:2069 end:2086 pic:3' CGTGGGGCAAAGGGTTCTG 5'& |||. |.|||||. &5' GCATAG----TTCCAAGG- 3' Sh3rf2 mmu-miR-2136 beg:1539 end:1561 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& .||||||| |||||| &5' TACATCTCTTACC-CACCCA- 3' Sh3rf2 mmu-miR-2140 beg:1727 end:1746 pic:3' TGGTGGTTCTAGACGTGGA 5'& .|||. || ||| |||. &5' GCCATGAA-ATCAGCAT-- 3' Sh3rf2 mmu-miR-2145 beg:1329 end:1349 pic:3' TTGGT-CCGG-GCTGGGACGA 5'& ||||| |||| |||.|. &5' AACCAGGGCCACGATCT---- 3' Sh3rf2 mmu-miR-2183 beg:871 end:889 pic:3' TCCTCCAGTC-CCCAAGTT 5'& ||| ||| |||||.|. &5' ---AGG-CAGCGGGTTTAG 3' Sh3rf2 mmu-miR-2861 beg:225 end:248 pic:3' GGCGGGCGG---CGGTCCGGGG 5'& |.|||.||| ||| |||. &5' CTGCCTGCCTTTGCCT--CCCT 3' Sh3rf2 mmu-miR-3099 beg:408 end:428 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& ||| |||.| ||||||| &5' -----AACATCTTTGTAGCCTA 3' Sh3rf2 mmu-miR-3099star beg:193 end:212 pic:3' GTTCCCGACCTTC-CTTCGACC 5'& ||| ||.||||| &5' ------CTGTAGACGAGGCTGG 3' Sh3rf2 mmu-miR-3471 beg:2201 end:2220 pic:3' TTACGGAATGTCAACCTAGAGT 5'& |. |||| |||.||| &5' ---GTAAA--AGTT-GATTTCA 3' Sh3rf2 mmu-miR-3473 beg:374 end:394 pic:3' CCGACT-CGGTAGAGAGGT 5'& || ||| |||||.| &5' GGATTTTGCC-TCTCTTC- 3' Sh3rf2 mmu-miR-3475 beg:351 end:372 pic:3' AAGTTTGGTACACGGAGGTCT 5'& || ||| |||||||||||. &5' --CATACC-TGTGCCTCCAGG 3' Sh3rf2 mmu-miR-432 beg:350 end:373 pic:3' GACGGGTGACTAGAT-GAGGTTCT 5'& .|||. | |. |||||.|| &5' ---TCCATACCTGTGCCTCCAGGA 3' Sh3rf2 mmu-miR-432 beg:2184 end:2205 pic:3' GACGGGTGACTAGAT-GAGGTTCT 5'& || .||| ||| .||.||| &5' -TGA--GCTG--CTATTTCTAAG- 3' Sh3rf2 mmu-miR-669e beg:1794 end:1821 pic:3' TACTTGTACGTGTG-----TGTTCTGT 5'& .||| |||| .||.|||| &5' ---GACACTCACAAGGACAGCAGGACA 3' Sh3rf2 mmu-miR-669e beg:31 end:54 pic:3' TACTTGTACGTGTGTGTTCTGT 5'& .||||. ||||.|.| ||| &5' GTGAAT-TGCATATAAAT-ACA 3' Sh3rf2 mmu-miR-669g beg:1145 end:1166 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& .|| || | .|||||. &5' GTCTGGTTGAA----GCAATGT- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sh3rf2 RAID00134197 mmu-miR-6950-5p miRNA MIMAT0027800 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00158755 mmu-miR-330-5p miRNA MIMAT0004642 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00205431 mmu-miR-6387 miRNA MIMAT0025134 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00206644 mmu-miR-224-5p miRNA MIMAT0000671 Sh3rf2 mRNA 269016 Prediction 0.2202 Sh3rf2 RAID00235418 mmu-miR-346-5p miRNA MIMAT0000597 Sh3rf2 mRNA 269016 Prediction 0.2202 Sh3rf2 RAID00252247 mmu-miR-1912-5p miRNA MIMAT0014957 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00282952 mmu-miR-1306-5p miRNA MIMAT0019136 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00302846 mmu-miR-6952-3p miRNA MIMAT0027805 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00348658 mmu-miR-664-5p miRNA MIMAT0017353 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00356938 mmu-miR-5627-3p miRNA MIMAT0022386 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00384098 mmu-miR-5619-3p miRNA MIMAT0022366 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00403004 mmu-miR-6368 miRNA MIMAT0025112 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00413986 mmu-miR-384-3p miRNA MIMAT0001076 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00538247 mmu-miR-292a-5p miRNA MIMAT0000369 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00542700 mmu-miR-301a-5p miRNA MIMAT0017008 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00545050 mmu-miR-5134-5p miRNA MIMAT0020645 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00573699 mmu-miR-873a-5p miRNA MIMAT0004936 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00620098 mmu-miR-7056-5p miRNA MIMAT0028016 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00675181 mmu-miR-467h miRNA MIMAT0005855 Sh3rf2 mRNA 269016 CLIP-seq 0.5483 Sh3rf2 RAID00698127 mmu-miR-326-3p miRNA MIMAT0000559 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00756923 mmu-miR-490-3p miRNA MIMAT0003780 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00775158 mmu-miR-876-3p miRNA MIMAT0004855 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00781479 mmu-miR-3473e miRNA MIMAT0025587 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00792930 mmu-miR-7093-5p miRNA MIMAT0028092 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00833218 mmu-miR-698-5p miRNA MIMAT0022930 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00924596 mmu-miR-201-3p miRNA MIMAT0017001 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00928412 mmu-miR-7677-5p miRNA MIMAT0029868 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00954910 mmu-miR-301b-5p miRNA MIMAT0017232 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID00984791 mmu-miR-31-5p miRNA MIMAT0000538 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01009966 mmu-miR-155-5p miRNA MIMAT0000165 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01046042 mmu-miR-212-3p miRNA MIMAT0000659 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01064841 mmu-miR-7019-5p miRNA MIMAT0027942 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01198090 mmu-miR-592-5p miRNA MIMAT0003730 Sh3rf2 mRNA 269016 Prediction 0.2202 Sh3rf2 RAID01217991 mmu-miR-350-5p miRNA MIMAT0017040 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01234387 mmu-miR-30e-5p miRNA MIMAT0000248 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01256918 mmu-miR-322-5p miRNA MIMAT0000548 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01286566 mmu-miR-494-3p miRNA MIMAT0003182 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01306568 mmu-miR-376c-3p miRNA MIMAT0003183 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01316607 mmu-miR-142a-3p miRNA MIMAT0000155 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01340033 mmu-miR-30b-5p miRNA MIMAT0000130 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01412192 mmu-miR-8104 miRNA MIMAT0031408 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01415601 mmu-miR-291b-3p miRNA MIMAT0003190 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01442527 mmu-miR-1982-5p miRNA MIMAT0009459 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01453742 mmu-miR-3085-3p miRNA MIMAT0014879 Sh3rf2 mRNA 269016 Prediction 0.2202 Sh3rf2 RAID01617771 mmu-miR-6979-3p miRNA MIMAT0027861 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01630714 mmu-miR-6907-5p miRNA MIMAT0027714 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01823919 mmu-miR-3078-5p miRNA MIMAT0014864 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01846682 mmu-miR-301b-3p miRNA MIMAT0004186 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01847175 mmu-miR-6405 miRNA MIMAT0025157 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01876735 mmu-miR-758-3p miRNA MIMAT0003889 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01901120 mmu-miR-342-3p miRNA MIMAT0000590 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01901597 mmu-miR-204-5p miRNA MIMAT0000237 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID01944392 mmu-miR-467b-5p miRNA MIMAT0005448 Sh3rf2 mRNA 269016 CLIP-seq 0.5483 Sh3rf2 RAID02000529 mmu-miR-125a-3p miRNA MIMAT0004528 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02020393 mmu-miR-6991-5p miRNA MIMAT0027884 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02028711 mmu-miR-154-5p miRNA MIMAT0000164 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02065656 mmu-miR-6973b-3p miRNA MIMAT0027909 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02212871 mmu-miR-7078-5p miRNA MIMAT0028062 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02213142 mmu-miR-370-3p miRNA MIMAT0001095 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02296318 mmu-miR-6979-5p miRNA MIMAT0027860 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02309663 mmu-miR-3075-3p miRNA MIMAT0014859 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02404870 mmu-miR-544-3p miRNA MIMAT0004941 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02491078 mmu-miR-374b-5p miRNA MIMAT0003727 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02555154 mmu-miR-1968-5p miRNA MIMAT0009441 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02565747 mmu-miR-377-3p miRNA MIMAT0000741 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02578092 mmu-miR-3064-5p miRNA MIMAT0014834 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02584582 mmu-miR-194-5p miRNA MIMAT0000224 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02599264 mmu-miR-6951-5p miRNA MIMAT0027802 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02711334 mmu-miR-30d-5p miRNA MIMAT0000515 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02744472 mmu-miR-290a-5p miRNA MIMAT0000366 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02798964 mmu-miR-146a-5p miRNA MIMAT0000158 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02847869 mmu-miR-7044-5p miRNA MIMAT0027992 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID02946824 mmu-miR-146b-5p miRNA MIMAT0003475 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03235992 mmu-miR-7211-3p miRNA MIMAT0028391 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03243998 mmu-miR-6906-5p miRNA MIMAT0027712 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03329879 mmu-miR-7041-3p miRNA MIMAT0027987 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03337443 mmu-miR-30a-5p miRNA MIMAT0000128 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03342134 mmu-miR-6960-5p miRNA MIMAT0027820 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03445143 mmu-miR-7010-3p miRNA MIMAT0027925 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03479762 mmu-miR-3473b miRNA MIMAT0020367 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03484214 mmu-miR-3106-5p miRNA MIMAT0014817 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03583412 mmu-miR-693-5p miRNA MIMAT0003472 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03645581 mmu-miR-6966-3p miRNA MIMAT0027835 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03666269 mmu-miR-212-5p miRNA MIMAT0017053 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03676251 mmu-miR-709 miRNA MIMAT0003499 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03691315 mmu-miR-9-5p miRNA MIMAT0000142 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03725745 mmu-miR-30c-5p miRNA MIMAT0000514 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03742457 mmu-miR-8091 miRNA MIMAT0031392 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03743219 mmu-miR-3547-5p miRNA MIMAT0027832 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03747082 mmu-miR-6983-5p miRNA MIMAT0027868 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03790609 mmu-miR-132-3p miRNA MIMAT0000144 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03827612 mmu-miR-211-5p miRNA MIMAT0000668 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03854073 mmu-miR-7063-3p miRNA MIMAT0028031 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03870429 mmu-miR-6946-5p miRNA MIMAT0027792 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03883044 mmu-miR-654-3p miRNA MIMAT0004898 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID03937733 mmu-miR-467e-5p miRNA MIMAT0005293 Sh3rf2 mRNA 269016 CLIP-seq 0.5483 Sh3rf2 RAID03976315 mmu-miR-384-5p miRNA MIMAT0004745 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID04013308 mmu-miR-3544-3p miRNA MIMAT0022354 Sh3rf2 mRNA 269016 Prediction 0.1828 Sh3rf2 RAID04037252 mmu-miR-6404 miRNA MIMAT0025156 Sh3rf2 mRNA 269016 Prediction 0.1828