DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Tnip2 ATTTA 83-1438 2003-2007 Stability of A+U-rich element binding factor 1 (AUF1)-binding#Mol Endocrinol 2004; 18(9): 2255-67.!Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.!

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000143 mmu-miR-9* 231130 Tnip2 ugAAAGCCAAUAGAUCGAAAUa ||| || |:|||||| uuUUUAUAAUAAAUGGCUUUAc 2 21 570 591 [mm9:5:34838745-34838766:-] 0.5448 136 6 -7.47 -0.2963 MIMAT0004541 mmu-miR-188-3p 231130 Tnip2 acGUUUGGGACGU--ACACCCUc |||:|: | || ||||||| ugCAAGCUAU-CAGUUGUGGGAa 2 20 280 301 [mm9:5:34839035-34839056:-] 0.5205 152 7 -20.51 -1.0435 MIMAT0004636 mmu-miR-93* 231130 Tnip2 gcccuucacGAUCGAGUCGUCa | | |||||||| gaaccuuccCAAACUCAGCAGa 2 14 464 485 [mm9:5:34838851-34838872:-] 0.5370 149 7 -15.09 -0.5452 MIMAT0004638 mmu-miR-323-5p 231130 Tnip2 cgCUUGCGCGGUGCCUGGUGGa | ::| |||: ||||||| ccGUGUGACCCAU-GACCACCa 2 21 13 33 [mm9:5:34839303-34839323:-] 0.4668 150 7 -23.04 -0.6420 MIMAT0000595 mmu-miR-345-5p 231130 Tnip2 uucgugacCUGAUCCCCAGUCg || |||||||| aggaggaaGAGGUGGGGUCAGg 2 15 196 217 [mm9:5:34839119-34839140:-] 0.5530 146 7 -20.74 -0.1486 MIMAT0001093 mmu-miR-411* 231130 Tnip2 ccaAUCACCUGG-CACAAUGUAu |: || |:: ||||||| cugUGCUGCAUUACAGUUACAUg 2 20 433 455 [mm9:5:34838881-34838903:-] 0.5248 142 7 -10.99 -0.5533 MIMAT0001094 mmu-miR-412 231130 Tnip2 gccgaUCACCUGGU-CCACUu | | ||||| ||||| uuuucAUUUGACCAUGGUGAg 2 16 146 166 [mm9:5:34839170-34839190:-] 0.4980 123 0 -17.03 -0.3493 MIMAT0002105 mmu-miR-464 231130 Tnip2 auAGAGU-GUCUUA-UUUGAACCAu |:| | || ::| |:||||||| caUUUGACCAUGGUGAGACUUGGUc 2 22 150 174 [mm9:5:34839162-34839186:-] 0.5417 155 7 -16.31 -0.1981 MIMAT0004781 mmu-miR-532-3p 231130 Tnip2 acgUUCGGAACCCACACCCUCc ||| || | |||||||| gggAAG--UU-GCUGUGGGAGc 2 20 348 366 [mm9:5:34838970-34838988:-] 0.5205 150 7 -18.97 -0.2971 MIMAT0003733 mmu-miR-665 231130 Tnip2 ucCCUGGAGUCGGAGGACCa | ::: || :||||||| guGUGUUGCAUUCUCCUGGg 2 19 84 103 [mm9:5:34839233-34839252:-] 0.5169 150 7 -17.45 -0.4588 MIMAT0003734 mmu-miR-667 231130 Tnip2 gaaccCGAC-CCACCGUC-CACAGu |||| || |||| ||||| aaguuGCUGUGGGAGCAGUGUGUCc 2 19 351 375 [mm9:5:34838961-34838985:-] 0.5205 129 0 -24.69 -0.1603 MIMAT0003736 mmu-miR-670 231130 Tnip2 aaguggUGUAUGUGAGUCCCUa | :|: : ||||||| aggaagAGGUGGGGUCAGGGAc 2 17 199 220 [mm9:5:34839116-34839137:-] 0.5530 144 7 -15.26 -0.1875 MIMAT0003898 mmu-miR-760 231130 Tnip2 agGGGUGUCUG-GGUCUCGGc |||| | | ||||||| uuCCCAAACUCAGCAGAGCCa 2 19 469 489 [mm9:5:34838847-34838867:-] 0.5370 149 7 -21.61 -0.5359 MIMAT0003740 mmu-miR-674 231130 Tnip2 auGUGGUGAGGGUAGAGUCACg | | ::|::|| ||||||| gaCUCAGUUUUCAACUCAGUGu 2 21 66 87 [mm9:5:34839249-34839270:-] 0.4918 160 7 -20.64 -0.5104 MIMAT0003741 mmu-miR-674* 231130 Tnip2 aaCAAGACUCUACCCUCGACAc |||: ||| | ||||||| gaGUUUGGAG-U--GAGCUGUc 2 21 251 269 [mm9:5:34839067-34839085:-] 0.5205 151 7 -16.38 -0.3482 MIMAT0004189 mmu-miR-693-3p 231130 Tnip2 aaugUCGGU-GUAGACUUUCGACg |||:: || :| ||||||| agugAGCUGUCAAUUCAAAGCUGc 2 20 259 282 [mm9:5:34839054-34839077:-] 0.5205 158 7 -16.91 -0.1464 MIMAT0003481 mmu-miR-695 231130 Tnip2 aagUCAGUGG--AU-ACGGGUUAGa || |||| || | ||:|||| gaaAG-CACCUUUAUUUCCUAAUCa 2 20 542 565 [mm9:5:34838771-34838794:-] 0.5448 135 0 -15.77 -0.1656 MIMAT0003500 mmu-miR-710 231130 Tnip2 gaguugagagggGUUCUGAACc ::||||||| auuugaccauggUGAGACUUGg 2 11 151 172 [mm9:5:34839164-34839185:-] 0.5417 142 7 -17.28 -0.1426 MIMAT0003511 mmu-miR-450b-5p 231130 Tnip2 auAAGUCCUUGUA-U--GACGUUUu | ||| | ||| | ||||||| caUCCAGUACCAUCACCCUGCAAAa 2 21 498 522 [mm9:5:34838814-34838838:-] 0.5448 154 7 -12.88 -0.5426 MIMAT0003512 mmu-miR-450b-3p 231130 Tnip2 uacguacGUUUUACAAGGGUUa :|:|| ||||||| gauacacUAGAACCUUCCCAAa 2 16 455 476 [mm9:5:34838860-34838881:-] 0.5292 151 7 -11.59 -0.5921 MIMAT0004237 mmu-miR-742 231130 Tnip2 aaaugggucguaccACCGAAAg ||||||| auuuuuauaauaaaUGGCUUUa 2 9 569 590 [mm9:5:34838746-34838767:-] 0.5448 140 7 -9.17 -1.3018 MIMAT0004898 mmu-miR-654-3p 231130 Tnip2 uuccacuaccagucGUCUGUAu ||||||| ------------gcCAGACAUu 2 9 1 10 [mm9:5:34839326-34839335:-] 0.5416 140 7 -9.45 -0.1956 MIMAT0005830 mmu-miR-466l 231130 Tnip2 uuauacacacguacaUAAAUAu |||||| cuuuauuuccuaaucAUUUAUu 2 8 550 571 [mm9:5:34838765-34838786:-] 0.5448 120 6 -1.76 -0.1848 MIMAT0005858 mmu-miR-1197 231130 Tnip2 ucuuCA-UCUGGU-ACACAGGAu || :|| || |||||||| ugcuGUGGGAGCAGUGUGUCCUc 2 18 355 377 [mm9:5:34838959-34838981:-] 0.5205 155 7 -19.75 -0.1803 MIMAT0005860 mmu-miR-1199 231130 Tnip2 ggcgcgcuggccCUGAGUCu ||||||| gagggguccucaGACUCAGu 2 9 54 73 [mm9:5:34839263-34839282:-] 0.4668 140 7 -18.13 -0.2588 MIMAT0007863 mmu-miR-1902 231130 Tnip2 uucaguacggaugaCGUGGAGa ||||||: uuccaaaagggaaaGCACCUUu 2 9 532 553 [mm9:5:34838783-34838804:-] 0.5448 124 0 -15.33 -0.1162 MIMAT0007866 mmu-miR-1905 231130 Tnip2 gauggcgcaccaccCUGACCAc ||||||| gagauacacucccuGACUGGUc 2 9 412 433 [mm9:5:34838903-34838924:-] 0.5205 140 7 -13.43 -0.2779 MIMAT0007866 mmu-miR-1905 231130 Tnip2 gauggcGCACCACCCUG-ACCAc | ||||| ||| |||| uuugacCAUGGUGAGACUUGGUc 2 17 152 174 [mm9:5:34839162-34839184:-] 0.5417 128 0 -19.47 -0.2688 MIMAT0007873 mmu-miR-1896 231130 Tnip2 gaGGAGUGGGUGGUAGUC-UCUc |||: |||| |||| ||| aaCCUU-CCCAAACUCAGCAGAg 2 21 465 486 [mm9:5:34838850-34838871:-] 0.5370 122 0 -24.21 -0.3302 MIMAT0009396 mmu-miR-1933-5p 231130 Tnip2 uuUGAUUCUGGCUUGU--GGUACUGa || | ||| ::: ||||||| agACAUUGCCCGUGUGACCCAUGACc 2 23 4 29 [mm9:5:34839307-34839332:-] 0.5416 145 7 -18.71 -0.1559 MIMAT0009431 mmu-miR-1958 231130 Tnip2 ugaaugacgaaggugAAAGGAu |||||| gggaaagcaccuuuaUUUCCUa 2 8 540 561 [mm9:5:34838775-34838796:-] 0.5448 120 6 -11.36 -0.3042 MIMAT0009432 mmu-miR-1959 231130 Tnip2 gagGUGACUCGAUGU-AGGGg :| |||| |||| |||| gagUAGUGAGAUACACUCCCu 2 18 405 425 [mm9:5:34838911-34838931:-] 0.5205 129 0 -18.75 -0.3793 MIMAT0009441 mmu-miR-1968 231130 Tnip2 ucAGGUGGUAGGAAUUGUCGACGu || :| : | |||||||| acUCAGCAGAGCCACACAGCUGCa 2 23 476 499 [mm9:5:34838837-34838860:-] 0.5370 146 7 -23.01 -0.6536 MIMAT0011221 mmu-miR-2145 231130 Tnip2 uuGGUCCGGG--CUGGGACGa |||| || ||||||| auCCAGUACCAUCACCCUGCa 2 18 499 519 [mm9:5:34838817-34838837:-] 0.5448 148 7 -21.85 -0.7388 MIMAT0004528 mmu-miR-125a-3p 231130 Tnip2 ccGAGGGUUCUUGGAGU-GGACa | :|||: | | ||| |||| ugCAUCCAGUACCAUCACCCUGc 2 21 496 518 [mm9:5:34838818-34838840:-] 0.5448 124 0 -21.55 -0.8041 MIMAT0000237 mmu-miR-204 231130 Tnip2 uccGU-AUCCUACUG--UUUCCCUu || | | || | ||||||| aaaCACUUGUAUUUCCAAAAGGGAa 2 20 520 544 [mm9:5:34838792-34838816:-] 0.5448 141 7 -11.95 -0.8847 MIMAT0000246 mmu-miR-122 231130 Tnip2 guuugugguaaCAGUGUGAGGu | :||||||| uugaguagugaGAUACACUCCc 2 12 403 424 [mm9:5:34838912-34838933:-] 0.5205 143 7 -12.96 -0.4685 MIMAT0000528 mmu-miR-18a 231130 Tnip2 gaUAGACGUGAUC---UACGUGGAAu ||:| || || | ||||||| guAUUUCCAAAAGGGAAAGCACCUUu 2 22 528 553 [mm9:5:34838783-34838808:-] 0.5448 152 7 -17.24 -1.1655 MIMAT0000535 mmu-miR-29a 231130 Tnip2 auuGGCUAAAG--UCUACCA-CGAu || |||| :|:|||| ||| uguCCUCUUUCCAGGGUGGUAGCUc 2 20 371 395 [mm9:5:34838941-34838965:-] 0.5205 122 0 -15.84 -0.3218 MIMAT0004651 mmu-miR-340-5p 231130 Tnip2 uuagucagAGUAA--CGAAAUAUu ||||| :|||||| uuuccuaaUCAUUUAUUUUUAUAa 2 15 555 578 [mm9:5:34838758-34838781:-] 0.5448 133 6 -8.78 -0.3428 MIMAT0000668 mmu-miR-211 231130 Tnip2 uccguuuccuacugUUUCCCUu ||||||| cacuuguauuuccaAAAGGGAa 2 9 523 544 [mm9:5:34838792-34838813:-] 0.5448 140 7 -10.74 -0.8881 MIMAT0000746 mmu-miR-381 231130 Tnip2 ugucucucgaacGGGAACAUAu | ||||||| cacccugcaaaaCACUUGUAUu 2 11 511 532 [mm9:5:34838804-34838825:-] 0.5448 142 7 -8.97 -0.6625 MIMAT0003893 mmu-miR-761 231130 Tnip2 acaCAGUCAAAGU--GGGAC-GACg || || | || ||||| ||| guaGUGAGAUACACUCCCUGACUGg 2 20 407 431 [mm9:5:34838905-34838929:-] 0.5205 122 0 -16.22 -0.2387 MIMAT0004853 mmu-miR-874 231130 Tnip2 agccagggAGCCCGGUCCC-GUc | |||:||||| || ggaagaggUGGGGUCAGGGACAu 2 15 200 222 [mm9:5:34839114-34839136:-] 0.5530 122 0 -21.52 -0.2421 MIMAT0004858 mmu-miR-18b 231130 Tnip2 gauuGUCGUGAUCUACGUGGAAu || | : | ||||||| uuucCAAAAGGGAAAGCACCUUu 2 20 531 553 [mm9:5:34838783-34838805:-] 0.5448 143 7 -16.78 -1.1655 MIMAT0004869 mmu-miR-421 231130 Tnip2 cgcggguuaauuacaGACAACUa ||||||| ggugguagcuccaucCUGUUGAg 2 9 385 407 [mm9:5:34838929-34838951:-] 0.5205 140 7 -13.81 -0.2359 MIMAT0004889 mmu-miR-504 231130 Tnip2 cuAUCUCACGU---CUGGUCCCAGa |||:| || |: ||||||| ucUAGGGCCCAAAUGGGCAGGGUCa 2 21 105 129 [mm9:5:34839207-34839231:-] 0.5169 151 7 -20.16 -0.1670

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G004863 Tnip2 Mus musculus 231130

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Tnip2 mmu-miR-204 beg:525 end:545 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& |.|| |||||||| &5' --GTATTTCCA---AAAGGGAA 3' Tnip2 mmu-miR-211 beg:534 end:545 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& |||||||| &5' --------------AAAGGGAA 3' Tnip2 mmu-miR-122 beg:411 end:424 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& | .||||||| &5' -----------GATACACTCC- 3' Tnip2 mmu-miR-464 beg:155 end:172 pic:3' ATAGAGTGTCTTATTTGAACCAT 5'& ||..| |.||||||| &5' -----CATGGTG-AGACTTGGT- 3' Tnip2 mmu-miR-710 beg:154 end:172 pic:3' GAGTTGAGAGGG---GTTCTGAACC 5'& || ..|||||||| &5' ---------CCATGGTGAGACTTGG 3' Tnip2 mmu-miR-504 beg:116 end:129 pic:3' CTATCTCACGTCTGGTCCCAGA 5'& |. ||||||| &5' -----------GGGCAGGGTC- 3' Tnip2 mmu-miR-1933-5p beg:10 end:29 pic:3' TTTGATTCTGGC---TTGTGGTACTGA 5'& ||| .|| ||||||| &5' ---------CCGTGTGAC-CCATGAC- 3' Tnip2 mmu-miR-1199 beg:54 end:73 pic:3' GGCGCGCTGGCC-CTGAGTCT 5'& | | || ||||||| &5' ----GGGTCCTCAGACTCAG- 3' Tnip2 mmu-miR-674star beg:250 end:269 pic:3' AACAAGACTCTACCCTCGACAC 5'& |||. ||| ||||||| &5' --GTTTGGAGT---GAGCTGT- 3' Tnip2 mmu-miR-18b beg:543 end:553 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& ||||||| &5' ---------------GCACCTT- 3' Tnip2 mghv-miR-M1-5 beg:255 end:275 pic:3' CTCTGCTGGGCTAGAGTTGAGA 5'& ||| .|| |.| ||||.|| &5' GAG-TGAGCTG---TCAATTC- 3' Tnip2 mghv-miR-M1-5 beg:63 end:83 pic:3' CTCTGCTGGGCT-AGAGTTGAGA 5'& |||.| |.||||||| &5' -----GACTCAGTTTTCAACTC- 3' Tnip2 mghv-miR-M1-7-3p beg:245 end:270 pic:3' TTATTTCC-ACC-CGCGCTATAG 5'& .||.|| ||| |.| | |.|| &5' -GTAGAGTTTGGAGTGAGCTGTC 3' Tnip2 mmu-miR-106bstar beg:68 end:89 pic:3' CGTCGTTCATGGGTGTCACGCC 5'& |||. |. |||||.| &5' -CAGTTTTCAACT-CAGTGTG- 3' Tnip2 mmu-miR-106bstar beg:353 end:373 pic:3' CGTCGTTCATGGGTGTCACGCC 5'& || | .| .|||||.| &5' GCTGTGGGA----GCAGTGTG- 3' Tnip2 mmu-miR-1190 beg:45 end:70 pic:3' CTG--TCTCCCCTTGGAGTC-GACT 5'& ||| .|||||| |||||| || &5' GACTGGGAGGGGT-CCTCAGACT-- 3' Tnip2 mmu-miR-1197 beg:356 end:377 pic:3' TCTTCATCTGG--TACACAGGAT 5'& ||.|. .|||||||| &5' ----GTGGGAGCAGTGTGTCCT- 3' Tnip2 mmu-miR-125a-5p beg:197 end:220 pic:3' AGTGTCCAATTTC-CCAGAGTCCCT 5'& ||| .|.| || ||||||| &5' ----AGGAAGAGGTGGGGTCAGGGA 3' Tnip2 mmu-miR-130bstar beg:190 end:207 pic:3' TCATCACGTTGTCC-CTTTCTCA 5'& |.|||| |.||||| &5' --------AGCAGGAGGAAGAG- 3' Tnip2 mmu-miR-145 beg:116 end:135 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& ||| ||| |||||| &5' -GGGCA----GGGTC-ACTGGA- 3' Tnip2 mmu-miR-146a beg:59 end:79 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& |.|| ||||||.||| &5' --CTCAGAC---TCAGTTTTCA 3' Tnip2 mmu-miR-146b beg:58 end:79 pic:3' TC-GGATACCTTAAGTCAAGAGT 5'& | ||| || ||||||.||| &5' -GTCCTCA-GAC-TCAGTTTTCA 3' Tnip2 mmu-miR-146bstar beg:96 end:113 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& |||.| .||||||| &5' -------CTGGGA-TCTAGGGC 3' Tnip2 mmu-miR-150star beg:492 end:510 pic:3' GATAGGGGGTCCGGACATGGTC 5'& |. || || |||||| &5' -----CTGCAT-CCAGTACCA- 3' Tnip2 mmu-miR-155 beg:434 end:455 pic:3' TGGGGATAGTGTTAATCGTAATT 5'& .|. | ||.|||.||| ||| &5' GCTGC-ATTACAGTTA-CAT--- 3' Tnip2 mmu-miR-17star beg:362 end:385 pic:3' GATGTT-CACGGGAGTGACGTCA 5'& .||. |||.|||| .| ||| &5' --GCAGTGTGTCCTCTTTCCAG- 3' Tnip2 mmu-miR-188-3p beg:279 end:301 pic:3' ACGTTTGGGACGT-ACACCCTC 5'& ||||.|. ||||||| &5' -GCAAGCTATCAGTTGTGGGA- 3' Tnip2 mmu-miR-188-3p beg:344 end:366 pic:3' ACGTTTGGGACGTACACCCTC 5'& | ..| .||| |||||||| &5' -GGGGAAGTTGC-TGTGGGAG 3' Tnip2 mmu-miR-1893 beg:0 end:19 pic:3' GCTCCGCAGGTC----GCGGGCGCGG 5'& |||| .|||||.|. &5' --------CCAGACATTGCCCGTGT- 3' Tnip2 mmu-miR-1902 beg:543 end:554 pic:3' TTCAGTACGGATGACGTGGAGA 5'& ||||||.| &5' --------------GCACCTTT 3' Tnip2 mmu-miR-1934 beg:194 end:218 pic:3' TCTCCTGCTTCGTCCCCTGGTCT 5'& .||||| ||.|. |||| .|||. &5' GGAGGAAGAGGT-GGGG-TCAGG 3' Tnip2 mmu-miR-1937b beg:43 end:56 pic:3' ACCCCCGAGCAGGCCCTA 5'& ||| |.|||| &5' ---GGGA----CTGGGA- 3' Tnip2 mmu-miR-1955 beg:85 end:106 pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& |.|||| | ||||||||. &5' ----GTTGCATT-C-TCCTGGGAT- 3' Tnip2 mmu-miR-1967 beg:47 end:66 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& || .||.|||||| &5' -------CTGGGAGGGGTCCTCA 3' Tnip2 mmu-miR-1968 beg:262 end:284 pic:3' TCAGGTGGTAGGAATTG-TCGACGT 5'& .|..|| ||||||| &5' -----GCTGTCAATTCAAAGCTGCA 3' Tnip2 mmu-miR-1968 beg:475 end:500 pic:3' TCAGGTGGTA--GGAATTGTCGACGT 5'& .|| || || ||||||||| &5' ---TCAGCAGAGCCAC-ACAGCTGCA 3' Tnip2 mmu-miR-1982star beg:458 end:476 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& |.|| |||.|||||| &5' -----CTAGAACCTTCCCAA 3' Tnip2 mmu-miR-207 beg:195 end:220 pic:3' CTCC--CTCC-TCTCGGTCCTCTTCG 5'& |||| |||| .|.|.|||| || &5' GAGGAAGAGGTGGGGTCAGG-GA--- 3' Tnip2 mmu-miR-211 beg:337 end:353 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& || ||| |.||||| &5' --GCT--GGA-----AGGGGAA 3' Tnip2 mmu-miR-2140 beg:483 end:502 pic:3' TGGTG-GTTCTAGACGTGGA 5'& .|||| || |||||.| &5' GCCACACAG---CTGCATC- 3' Tnip2 mmu-miR-2145 beg:498 end:519 pic:3' TTGGTCCGGGC--TGGGACGA 5'& |||| || ||||||| &5' --CCAGTACCATCACCCTGC- 3' Tnip2 mmu-miR-214 beg:421 end:442 pic:3' TGAC-GGACAGACACGGACGACA 5'& ||| |. ||||||| |||| &5' -CTGACTGGTCTGTG-CTGC--- 3' Tnip2 mmu-miR-2183 beg:203 end:226 pic:3' TC-CTCCAGTCCCCA-AGTT 5'& .| |.|||||||| |||| &5' GGTGGGGTCAGGGACATCAA 3' Tnip2 mmu-miR-27bstar beg:466 end:489 pic:3' CAAGTGGTT--AGTCGATTCGAGA 5'& ||| |||| ||||| .||| | &5' -TTC-CCAAACTCAGCAGAGC-C- 3' Tnip2 mmu-miR-29astar beg:216 end:238 pic:3' GACTTGTGGTTT-TCTTTAGTCA 5'& |.|||.|||. .|| |||||| &5' --GGACATCAAGTGGACATCAGT 3' Tnip2 mmu-miR-3099star beg:337 end:357 pic:3' GTTCCCGACCT--TCCTTCGACC 5'& |||||| .|||||.|| &5' -----GCTGGAAGGGGAAGTTG- 3' Tnip2 mmu-miR-30astar beg:118 end:136 pic:3' CGACGTTTGTAGGCTGACTTTC 5'& |||.. .|| ||||.||| &5' ---GCAGG-GTC--ACTGGAAG 3' Tnip2 mmu-miR-323-5p beg:12 end:33 pic:3' CGCTTGCGCGGTGC---CTGGTGGA 5'& ||.|. || ||||||| &5' -----CGTGTGACCCATGACCACC- 3' Tnip2 mmu-miR-328 beg:99 end:130 pic:3' TGCCT---TCCCGT-----CTC-TCCCGGTC 5'& ||| ||||| |.| ||||.|| &5' --GGATCTAGGGCCCAAATGGGCAGGGTCA- 3' Tnip2 mmu-miR-338-3p beg:332 end:346 pic:3' GTTGTTTTAGTGACTACGACCT 5'& |||| ||||||| &5' ---------CACT--TGCTGGA 3' Tnip2 mmu-miR-33star beg:282 end:306 pic:3' CACTACGT-----GACACCTTTGTAAC 5'& || .|||||.||.||| &5' -----GCTATCAGTTGTGGGAATATT- 3' Tnip2 mmu-miR-342-5p beg:532 end:554 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& ||| | .|| ||||||..| &5' --CAAA-AGGGAAAGCACCTTT 3' Tnip2 mmu-miR-345-5p beg:197 end:217 pic:3' TTCGTGACCTGAT---CCCCAGTCG 5'& ||| |||||||| &5' -------GGAAGAGGTGGGGTCAG- 3' Tnip2 mmu-miR-378star beg:200 end:219 pic:3' TGTGTCCTGGACCTCAGTCCTC 5'& | ||| |||.||||||. &5' --AGAGG---TGGGGTCAGGG- 3' Tnip2 mmu-miR-450a-3p beg:451 end:476 pic:3' TACTTACGTTTCGT--AGGGGTTA 5'& |||| || |.||||| &5' ATGATACACTAGAACCTTCCCAA- 3' Tnip2 mmu-miR-450b-3p beg:459 end:476 pic:3' TACGTACGTTTTACAAGGGTTA 5'& .|.|| ||||||| &5' -------TAGAACCTTCCCAA- 3' Tnip2 mmu-miR-450b-3p beg:513 end:537 pic:3' TACGTACGTTTT----ACA--AGGGTTA 5'& ||||||| ||| |.|||| &5' -----TGCAAAACACTTGTATTTCCAA- 3' Tnip2 mmu-miR-450b-5p beg:499 end:523 pic:3' ATAAGTCCTT---GTATGACGTTTT 5'& ||| || |||||||| &5' ----CAGTACCATCACCCTGCAAAA 3' Tnip2 mmu-miR-466g beg:422 end:437 pic:3' ACACACACGTACACAGACATA 5'& || || ||||||. &5' ------TGACTG-GTCTGTG- 3' Tnip2 mmu-miR-467e beg:513 end:530 pic:3' TGTATATGTACGAG-TGTGAATA 5'& ||| ||||||.| &5' ---------TGCAAAACACTTGT 3' Tnip2 mmu-miR-469 beg:185 end:209 pic:3' CCTGTG--GTTCTAGTTACTTTCTCCGT 5'& |||| ||.|| |.||||||. &5' -GACAGAGCAGGA-----GGAAGAGGT- 3' Tnip2 mmu-miR-532-3p beg:346 end:366 pic:3' ACGTTCGGAACCCACACCCTCC 5'& | |||.. |||||||| &5' -GGAAGTTGC---TGTGGGAG- 3' Tnip2 mmu-miR-542-5p beg:407 end:428 pic:3' AGCACTGTACTACTAGGGGCTC 5'& |||| || ||||.|| &5' --GTGAGATACAC-TCCCTGA- 3' Tnip2 mmu-miR-615-3p beg:49 end:71 pic:3' TTCTCCCTCTGGGTCCGAGCCT 5'& ..|||||. |.||| ||| &5' GGGAGGGGTCCTCAGACTC--- 3' Tnip2 mmu-miR-665 beg:83 end:103 pic:3' TCCCTGGAGTCGGAGGACCA 5'& | . || ||||||| &5' --GTGTTGCATTCTCCTGG- 3' Tnip2 mmu-miR-666-5p beg:0 end:17 pic:3' CCGAGAGTGTCGAC-ACGGGCGA 5'& ||| ||||||. &5' --------CAGACATTGCCCGT- 3' Tnip2 mmu-miR-669a beg:477 end:497 pic:3' TGTACTTGTA-CGTGTGTGTTGA 5'& |.|| || ||||||.|| &5' -----AGCAGAGC-CACACAGCT 3' Tnip2 mmu-miR-669l beg:478 end:497 pic:3' TGTATATGTA-CGTGTGTGTTGA 5'& .|| || ||||||.|| &5' ------GCAGAGC-CACACAGCT 3' Tnip2 mmu-miR-670 beg:202 end:220 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& | .|. . ||||||| &5' ------AGGTGGGGTCAGGGA- 3' Tnip2 mmu-miR-673-5p beg:342 end:364 pic:3' GAGGTTCCTGGTCT-CGACACTC 5'& ||||. || ||||||.| &5' ----AAGGGGAAGTTGCTGTGGG 3' Tnip2 mmu-miR-674 beg:66 end:88 pic:3' ATGTGGTGAGGGTAGAGTCACG 5'& || | .| || |||||||. &5' -ACTCAGTTTTCAACTCAGTGT 3' Tnip2 mmu-miR-678 beg:37 end:56 pic:3' GGAGGTCAGGAACGTGGCTCTG 5'& |||.| | ||.|.|| &5' -CTCTAAG----GGACTGGGA- 3' Tnip2 mmu-miR-682 beg:254 end:284 pic:3' GTCTGAAGTGACAC--------TGACGTC 5'& .|| | .|||| .||||| &5' -GGAGTGAGCTGTCAATTCAAAGCTGCA- 3' Tnip2 mmu-miR-684 beg:535 end:548 pic:3' AACTGAACTTCCCTTTTGA 5'& ||||||||.| &5' --------AAGGGAAAGC- 3' Tnip2 mmu-miR-693-3p beg:261 end:283 pic:3' AATGTCGGT-GTAGACTTTCGACG 5'& |||.. || .| |||||||| &5' ----AGCTGTCAATTCAAAGCTGC 3' Tnip2 mmu-miR-713 beg:430 end:450 pic:3' CGACAC-ACGGAA-GTCACGT 5'& ||||| ||| || |||| &5' -CTGTGCTGCATTACAGT--- 3' Tnip2 mmu-miR-760 beg:466 end:489 pic:3' AGGGGTGTCTGG-GTCTCGGC 5'& |.|||| | ||||||| &5' TTCCCAAACTCAGCAGAGCC- 3' Tnip2 mmu-miR-883a-5p beg:465 end:484 pic:3' CATTGACGATGAAGA----GAGTCGT 5'& |||| ||||||| &5' ----------CTTCCCAAACTCAGCA 3' Tnip2 mmu-miR-93star beg:474 end:485 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& |||||||| &5' -------------CTCAGCAG- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Tnip2 RAID00335974 mmu-miR-344h-5p miRNA MIMAT0022383 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID00412833 mmu-miR-381-3p miRNA MIMAT0000746 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID00454816 mmu-miR-7666-3p miRNA MIMAT0029839 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID00467568 mmu-miR-761 miRNA MIMAT0003893 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID00661658 mmu-miR-340-5p miRNA MIMAT0004651 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID00935864 mmu-miR-122-5p miRNA MIMAT0000246 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID00939554 mmu-miR-19b-1-5p miRNA MIMAT0017065 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID01314087 mmu-miR-204-5p miRNA MIMAT0000237 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID01411148 mmu-miR-421-3p miRNA MIMAT0004869 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID01529567 mmu-miR-504-5p miRNA MIMAT0004889 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID01628636 mmu-miR-219b-5p miRNA MIMAT0029806 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID01639797 mmu-miR-7239-3p miRNA MIMAT0028447 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID01874210 mmu-miR-152-5p miRNA MIMAT0016991 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID02045346 mmu-miR-19b-2-5p miRNA MIMAT0017010 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID02145671 mmu-miR-29a-3p miRNA MIMAT0000535 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID02150579 mmu-miR-18a-5p miRNA MIMAT0000528 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID02352570 mmu-miR-125a-3p miRNA MIMAT0004528 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID02372785 mmu-miR-1968-5p miRNA MIMAT0009441 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID02675445 mmu-miR-211-5p miRNA MIMAT0000668 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID02715927 mmu-miR-344e-5p miRNA MIMAT0014923 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID02871259 mmu-miR-323-5p miRNA MIMAT0004638 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID03071511 mmu-miR-7029-3p miRNA MIMAT0027963 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID03163858 mmu-miR-18b-5p miRNA MIMAT0004858 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID03171693 mmu-miR-1291 miRNA MIMAT0031397 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID03326550 mmu-miR-874-3p miRNA MIMAT0004853 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID03351724 mmu-miR-5621-3p miRNA MIMAT0022370 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID03440110 mmu-miR-760-3p miRNA MIMAT0003898 Tnip2 mRNA 231130 Prediction 0.2202 Tnip2 RAID03498052 mmu-miR-1905 miRNA MIMAT0007866 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID03796092 mmu-miR-188-3p miRNA MIMAT0004541 Tnip2 mRNA 231130 Prediction 0.1828 Tnip2 RAID03996530 mmu-miR-7084-3p miRNA MIMAT0028075 Tnip2 mRNA 231130 Prediction 0.1828