DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004579 mmu-miR-302a* 17938 Naca cgUUCAUGUUGGUGCAAAUUca || ||||:|: |||||| ggAACUACAGCUUGGUUUAAaa 3 21 56 77 [mm9:10:127485619-127485640:+] 0.5693 148 0 -10.04 -0.1078 MIMAT0004622 mmu-let-7c-1* 17938 Naca ccuuUCGAUCUUCCAACAUGuc :|:| || |||||| gcuuGGUUUAAAAUUUGUACug 3 19 65 86 [mm9:10:127485628-127485649:+] 0.5693 130 0 -8.62 -0.1228 MIMAT0004758 mmu-miR-463 17938 Naca gaUGGAAUAUACCACAGAUAGu | :||:|| || |||||| aaAAUUUGUACUGUUUCUAUCa 2 21 74 95 [mm9:10:127485637-127485658:+] 0.5693 136 6 -14.69 -0.1898 MIMAT0003472 mmu-miR-693-5p 17938 Naca cuuuugaaagcCUACACCGAc | ||||||| ucacuaauaaaGUUGUGGCUu 2 11 93 113 [mm9:10:127485656-127485676:+] 0.5693 142 7 -10.59 -0.9468 MIMAT0009410 mmu-miR-1945 17938 Naca cagggcugucaugggCGCUUCu |||||| -----cuauuugacaGCGAAGa 2 8 1 17 [mm9:10:127485564-127485580:+] 0.5693 120 6 -17.16 -0.1157 MIMAT0009424 mmu-miR-1953 17938 Naca gucuucggacucuuGAAAGGGu ||||||| gaagacaacuccccCUUUCCCc 2 9 13 34 [mm9:10:127485576-127485597:+] 0.5693 140 7 -13.60 -0.5987 MIMAT0000133 mmu-miR-101a 17938 Naca aagucAAUAGU-GUCAUGACAu ||| | : ||||||| uugguUUAAAAUUUGUACUGUu 2 17 67 88 [mm9:10:127485630-127485651:+] 0.5693 143 7 -10.80 -1.2807 MIMAT0000144 mmu-miR-132 17938 Naca gcugguaccgacaucUGACAAu |||||| ugguuuaaaauuuguACUGUUu 2 8 68 89 [mm9:10:127485631-127485652:+] 0.5693 120 6 -10.03 -0.1214 MIMAT0000156 mmu-miR-144 17938 Naca ucAUGUAGUAGAUAUGACAu | :| ||:|:|||||| ggUUUAAAAUUUGUACUGUu 2 19 69 88 [mm9:10:127485632-127485651:+] 0.5693 142 6 -14.55 -0.2429 MIMAT0000616 mmu-miR-101b 17938 Naca aagucgauaguguCAUGACAu ||||||| ugguuuaaaauuuGUACUGUu 2 9 68 88 [mm9:10:127485631-127485651:+] 0.5693 140 7 -10.38 -1.2825 MIMAT0000659 mmu-miR-212 17938 Naca accggcacugaccucUGACAAu |||||| ugguuuaaaauuuguACUGUUu 2 8 68 89 [mm9:10:127485631-127485652:+] 0.5693 120 6 -10.13 -0.1190 MIMAT0000666 mmu-miR-320 17938 Naca agcgggagagUUGG-GUCGAAaa |||: |||||| ugaaaaguggAACUACAGCUUgg 3 13 48 70 [mm9:10:127485611-127485633:+] 0.5693 127 0 -9.76 -0.1586 MIMAT0000766 mmu-miR-335-5p 17938 Naca uguaaaaagCAAUAACG-AGAACu |||:| || ||||| acuaauaaaGUUGUGGCUUCUUGu 2 15 95 118 [mm9:10:127485658-127485681:+] 0.5668 122 0 -12.05 -0.2542 MIMAT0003182 mmu-miR-494 17938 Naca cuCCAAA--GGGCACAU-ACAAAGu ||||| : |||| |||||| uuGGUUUAAAAUUUGUACUGUUUCu 2 21 67 91 [mm9:10:127485630-127485654:+] 0.5693 123 6 -13.19 -1.1443 MIMAT0004896 mmu-miR-590-3p 17938 Naca ugaUCGAAUAUGUAUUUUAAu |||||: :: ||||||| uacAGCUUG-GUUUAAAAUUu 2 19 61 80 [mm9:10:127485624-127485643:+] 0.5693 156 7 -11.24 -0.9471

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G031426 Naca Mus musculus 17938

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Naca mmu-miR-101a beg:67 end:88 pic:3' AAGTCAATAG-TGT-CATGACAT 5'& .||| |. ||||||| &5' ---GGTTTAAAATTTGTACTGT- 3' Naca mmu-miR-101b beg:66 end:88 pic:3' AAGTCGATAG-TGT-CATGACAT 5'& | |.| |. ||||||| &5' -TTGGTTTAAAATTTGTACTGT- 3' Naca mmu-miR-1953 beg:12 end:34 pic:3' GTCTTCG---GACTCTTGAAAGGGT 5'& |||| || ||||||| &5' --GAAGACAACTCCCC-CTTTCCC- 3' Naca mmu-miR-1957 beg:76 end:98 pic:3' CAGTAT-AC-GAGATGGTGAC 5'& | || || .||||.|||| &5' -TTGTACTGTTTCTATCACT- 3' Naca mmu-miR-3470a beg:60 end:82 pic:3' GGTCGGACCAGATGTTTCACT 5'& ||||.||||.|| || || &5' -CAGCTTGGTTTAAAATTTG- 3' Naca mmu-miR-464 beg:51 end:72 pic:3' ATAGAGTGTCTT-AT-TTGAACCAT 5'& . ||| || |.|||||| &5' ------GTGGAACTACAGCTTGGT- 3' Naca mmu-miR-708 beg:101 end:117 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& .|||| .|||.||| &5' ---------GTTGT-GGCTTCTT 3' Naca mmu-miR-872star beg:53 end:75 pic:3' TCCTCCGATGACGTTATCAAGT 5'& ||| |||| || |.|||.| &5' -GGAA-CTACAGCT-TGGTTTA 3' Naca mmu-miR-876-3p beg:79 end:99 pic:3' ACTTAATGAAACATTTGGTGAT 5'& |||| |.||||| &5' -----TACTGTTTCTATCACTA 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Naca RAID00004242 mmu-miR-6909-5p miRNA MIMAT0027718 Naca mRNA 17938 Prediction 0.1828 Naca RAID00118473 mmu-miR-335-5p miRNA MIMAT0000766 Naca mRNA 17938 Prediction 0.1828 Naca RAID00295362 mmu-miR-320-3p miRNA MIMAT0000666 Naca mRNA 17938 Prediction 0.1828 Naca RAID00990753 mmu-miR-101a-3p miRNA MIMAT0000133 Naca mRNA 17938 Prediction 0.2381 Naca RAID02152718 mmu-miR-212-3p miRNA MIMAT0000659 Naca mRNA 17938 Prediction 0.1828 Naca RAID02852873 mmu-miR-693-5p miRNA MIMAT0003472 Naca mRNA 17938 Prediction 0.1828 Naca RAID02865371 mmu-miR-144-3p miRNA MIMAT0000156 Naca mRNA 17938 Prediction 0.1828 Naca RAID02937885 mmu-miR-132-3p miRNA MIMAT0000144 Naca mRNA 17938 Prediction 0.1828 Naca RAID03140044 mmu-miR-101b-3p miRNA MIMAT0000616 Naca mRNA 17938 Prediction 0.1828 Naca RAID03205070 mmu-miR-590-3p miRNA MIMAT0004896 Naca mRNA 17938 Prediction 0.1828 Naca RAID03709571 mmu-miR-494-3p miRNA MIMAT0003182 Naca mRNA 17938 Prediction 0.1828 Naca RAID03761334 mmu-miR-7073-5p miRNA MIMAT0028052 Naca mRNA 17938 Prediction 0.1828