DNA & RNA Element - circBase circRNA ID Chrom Start End Strand mmu_circ_0001525 chr6 125071624 125071693 -

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT010827 mmu-miR-324-3p Mus musculus Chd4 107932 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004523 mmu-miR-29b* 107932 Chd4 auuugGUGGUAUACUU-UGGUCg ||:| | | || ||||| guuggCAUCUUUUUAAUACCAGg 2 18 435 457 [mm9:6:125080454-125080476:+] 0.7110 121 0 -11.67 -0.9656 MIMAT0000152 mmu-miR-140* 107932 Chd4 ggcACCAAGAUGGGAC-ACCAu |||||:||:::|| |||| uuuUGGUUUUAUUUUGUUGGUu 2 19 341 362 [mm9:6:125080360-125080381:+] 0.6912 126 0 -20.91 -0.3345 MIMAT0004534 mmu-miR-145* 107932 Chd4 guucuugucAUAAAGGUCCUUa || | ||||||| gcaucuuuuUAAUACCAGGAAc 2 14 439 460 [mm9:6:125080458-125080479:+] 0.7110 149 7 -11.64 -0.8647 MIMAT0004542 mmu-miR-191* 107932 Chd4 cccuugcUUUAGGUUCACGUCg |:: | |||||||| gcucuuaAGGGCAAAGUGCAGa 2 16 1606 1627 [mm9:6:125054891-125054912:+] 0.6976 151 7 -17.48 -0.1296 MIMAT0004544 mmu-miR-193* 107932 Chd4 aguagaacgggcguUUCUGGGu ||||||| --------------AAGACCCa 2 9 1 8 [mm9:6:125080020-125080027:+] 0.5073 140 7 -12.47 -0.5489 MIMAT0000240 mmu-miR-207 107932 Chd4 cuCCCUCCUCUCGGUCCUCUUCg || |||: :| :||||||| ggGGCAGGGAGGGAGGGAGAAGc 2 22 143 165 [mm9:6:125080162-125080184:+] 0.6332 161 7 -32.88 -0.2231 MIMAT0000370 mmu-miR-292-3p 107932 Chd4 ugUGAGUU--UUG-GACCGCCGU-GAAa || ||: | | ||| :|||| ||| agACACAGCUACCUCUGUUGGCAUCUUu 2 23 419 446 [mm9:6:125080438-125080465:+] 0.7110 120 0 -19.85 -0.9534 MIMAT0004573 mmu-miR-293* 107932 Chd4 guuuuacagUGUGUCAAACUCa | | |||||||| aacugggagAGAGAGUUUGAGa 2 14 2482 2503 [mm9:6:125058350-125058371:+] 0.7596 149 7 -11.55 -0.1082 MIMAT0000371 mmu-miR-293 107932 Chd4 ugugaUGUUUGA-GACGCCGUGa | |||:| ||||||||| cugggAGAAAUUGCUGCGGCACc 2 18 4056 4078 [mm9:6:125070282-125070304:+] 0.8149 164 7 -21.86 -0.1007 MIMAT0000371 mmu-miR-293 107932 Chd4 ugUGAUGUUUGAGACGCC-GUGa | | ::: | |||||| ||| ucAAUCUGGCCACUGCGGACACa 2 21 3515 3537 [mm9:6:125063540-125063562:+] 0.7982 120 0 -15.61 -0.2089 MIMAT0004575 mmu-miR-295* 107932 Chd4 cuucacacggggUGUAAACUCa |:||||||| gggcaugaaugaAUAUUUGAGc 2 11 3930 3951 [mm9:6:125064418-125064439:+] 0.7839 146 7 -10.85 -0.1320 MIMAT0004583 mmu-miR-130b* 107932 Chd4 ucaucacguuguccCUUUCUCa ||||||| aagcucggaccuaaGAAAGAGa 2 9 511 532 [mm9:6:125050928-125050949:+] 0.7147 140 7 -10.93 -0.3248 MIMAT0004629 mmu-miR-22* 107932 Chd4 auuUCGAACGGUGACUUCU-UGa || || |||||||| || accAGGAUGAGACUGAAGACACa 2 20 3899 3921 [mm9:6:125064387-125064409:+] 0.7839 127 0 -14.47 -0.1130 MIMAT0004630 mmu-miR-26b* 107932 Chd4 cucGGUUCAUUACCUCUU-GUCc |: |||:|| ||||| ||| gauCUUAGUGAU-GAGAAGCAGa 2 20 5193 5214 [mm9:6:125072898-125072919:+] 0.7018 129 0 -15.63 -0.1701 MIMAT0004635 mmu-miR-92a* 107932 Chd4 cauuACGGUGGUUAGGGGUGGa || | :| |||||||| acccUGGCUUC--UCCCCACCg 2 19 255 274 [mm9:6:125080274-125080293:+] 0.6539 147 7 -20.10 -0.5175 MIMAT0004638 mmu-miR-323-5p 107932 Chd4 cgcuugcgcggugcCUGGUGGa ||||||| aaaagaaaaagaaaGACCACCa 2 9 1205 1226 [mm9:6:125052302-125052316,125052489-125052495:+] 0.7007 140 7 -16.37 -0.2475 MIMAT0000605 mmu-miR-350 107932 Chd4 cuuuCACAUACCCGAAACACuu || :| ||||||| uuuuGUUGGUUUACUUUGUGuu 3 19 352 373 [mm9:6:125080371-125080392:+] 0.6912 126 0 -12.42 -0.1034 MIMAT0004670 mmu-miR-7a* 107932 Chd4 auaccgucugacacuAAACAAc |||||| ucuuuuugguuuuauUUUGUUg 2 8 338 359 [mm9:6:125080357-125080378:+] 0.6912 120 6 -8.93 -0.2543 MIMAT0004670 mmu-miR-7a* 107932 Chd4 auaccgucugacacUAAACAAc ||||||| aaggccuucagccaAUUUGUUa 2 9 691 712 [mm9:6:125051332-125051353:+] 0.8598 140 7 -7.08 -0.1598 MIMAT0003388 mmu-miR-376b* 107932 Chd4 auUGGUAUCUUCCUUAUAGGUg ||| || || :||||||| agACC-CAG-AGUGAUAUCCAc 2 21 2 21 [mm9:6:125080021-125080040:+] 0.5073 152 7 -19.01 -0.3106 MIMAT0001421 mmu-miR-434-5p 107932 Chd4 accAAGUUUGGUACUCAG-CUCg |||:|: || |||| ||| aucUUCGAGGCA--AGUCAGAGa 2 20 4459 4479 [mm9:6:125070961-125070981:+] 0.8181 120 0 -15.85 -0.3235 MIMAT0002105 mmu-miR-464 107932 Chd4 auagaGUGUCUUAUUUGAACCAu :|: ||| : ||||||| gggaaUAUUGAA-GUACUUGGUu 2 19 4344 4365 [mm9:6:125070739-125070750,125070858-125070867:+] 0.7721 148 7 -12.98 -0.2039 MIMAT0004782 mmu-miR-483 107932 Chd4 gaGGGAAGAGAAGAGGGCAGAa ||| ||| || ||||||| gaCCC--CUC-UCACCCGUCUa 2 21 5577 5595 [mm9:6:125078876-125078894:+] 0.8019 155 7 -24.40 -0.1215 MIMAT0004786 mmu-miR-540-5p 107932 Chd4 ugUCUCAGUCUCCCACUGGGAAc :|:| |||| | ||||||| ugGGGGCCAGA--GAGACCCUUg 2 22 73 93 [mm9:6:125080092-125080112:+] 0.5175 158 7 -27.00 -0.1572 MIMAT0003170 mmu-miR-541 107932 Chd4 ucacacuggUUGUAGUCUUAGGGAa :|| :| ||||||| aaaccucgaGACCCUAAAAUCCCUa 2 17 352 376 [mm9:6:125050560-125050584:+] 0.7138 148 7 -13.98 -0.2206 MIMAT0005295 mmu-miR-376c* 107932 Chd4 auUUGUAUCUUCCUUAUAGGUg :|| || || :||||||| aaGACCCAG-AGUGAUAUCCAc 2 21 1 21 [mm9:6:125080020-125080040:+] 0.5073 154 7 -19.66 -0.3106 MIMAT0003733 mmu-miR-665 107932 Chd4 uccCUGGAGUCGGAGGACCa |||: :| ||||||| agcGACUAUA--CUCCUGGc 2 18 478 495 [mm9:6:125050895-125050912:+] 0.7555 146 7 -17.76 -0.1079 MIMAT0003462 mmu-miR-684 107932 Chd4 aaCUGAACUUC----CCUUUUGa |:| ||||| ||||||| cuGGC-UGAAGUAGAGGAAAACa 2 18 4680 4701 [mm9:6:125071579-125071600:+] 0.7536 146 7 -15.91 -0.4155 MIMAT0003464 mmu-miR-686 107932 Chd4 agaaguggcagaCCCUUCGUUa | ||||||| cagggagggaggGAGAAGCAAu 2 11 147 168 [mm9:6:125080166-125080187:+] 0.6332 142 7 -13.46 -0.2658 MIMAT0003469 mmu-miR-690 107932 Chd4 aaaccaacaCUCGGAUCGGAAa || ||||||| aaaauagagGAAAAUAGCCUUa 2 14 4812 4833 [mm9:6:125071961-125071982:+] 0.6919 141 7 -11.68 -0.2970 MIMAT0003470 mmu-miR-691 107932 Chd4 aaAAGACGGAGAGAAGUC-CUUa ||:| : ||| |||| ||| ggUUUUAAUGCUCGUCAGCGAAa 2 21 4362 4384 [mm9:6:125070864-125070886:+] 0.7712 124 0 -10.78 -0.1650 MIMAT0003471 mmu-miR-692 107932 Chd4 cucacuccgcgagUUUCUCUa ||||||| gcucggaccuaagAAAGAGAa 2 9 513 533 [mm9:6:125050930-125050950:+] 0.7147 140 7 -9.83 -0.1523 MIMAT0005448 mmu-miR-467b 107932 Chd4 guauaUGUACGUCCGUGAAUg |: | | ||||||| gcggaAUUUCGAAGCACUUAa 2 17 3090 3110 [mm9:6:125059821-125059841:+] 0.7658 144 7 -13.01 -0.1539 MIMAT0003498 mmu-miR-708* 107932 Chd4 gauCUUCGAGU--GUCAGA-UCAAc |||| || |||||| |||| gcuGAAGAACAACCAGUCUAAGUUc 2 20 2748 2772 [mm9:6:125058793-125058814,125059070-125059072:+] 0.7350 130 0 -18.10 -0.1257 MIMAT0004237 mmu-miR-742 107932 Chd4 aaAUGGGUCGUACCACCGAAAg | ::| | | |||:||| uuUCUUCCUCUUUUUGGUUUUa 2 21 330 351 [mm9:6:125080349-125080370:+] 0.6912 128 0 -8.55 -0.1469 MIMAT0004841 mmu-miR-871 107932 Chd4 guacugaccgUGAUUAGACUUAu | |:|||||||| gcucgaagaaAAUGAUCUGAAUu 2 14 309 331 [mm9:6:125080328-125080350:+] 0.6912 153 7 -12.68 -1.1430 MIMAT0004841 mmu-miR-871 107932 Chd4 guacugaccgUGAUUAGACUUAu | |:|||||||| gcucgaagaaAAUGAUCUGAAUu 2 14 6197 6219 [mm9:6:125080328-125080350:+] 0.6912 153 7 -12.68 -0.1324 MIMAT0004846 mmu-miR-881 107932 Chd4 agauaagUCUUUUCUGU-GUCAa :||:|||||| |||| caaggagGGAGAAGACAGCAGUg 2 16 3831 3853 [mm9:6:125064319-125064341:+] 0.7839 131 0 -17.37 -0.1111 MIMAT0004848 mmu-miR-883a-5p 107932 Chd4 cauugACGAUGAAGAG-AGUCGu | :|| | ||| ||||| cuuggUUUUAAUGCUCGUCAGCg 2 18 4359 4381 [mm9:6:125070861-125070883:+] 0.7712 121 0 -15.18 -0.2366 MIMAT0004868 mmu-miR-343 107932 Chd4 agaCCCGUGUACUUCC-CUCu | ||||| ||||| ||| agaGAGCACA-GAAGGAGAGa 2 18 4841 4860 [mm9:6:125071990-125072009:+] 0.6919 127 0 -21.62 -0.1244 MIMAT0004868 mmu-miR-343 107932 Chd4 agACCCGUGUACUUC-CCUCu |||| : | |||| |||| gaUGGG-GGAGGAAGAGGAGg 2 19 3990 4009 [mm9:6:125064478-125064484,125070223-125070235:+] 0.7994 120 0 -21.84 -0.1271 MIMAT0004888 mmu-miR-493 107932 Chd4 ggaccGUGUGUCAUC-CUGGAAGu ||| ||| || ||||||| uccacCACUCAGCAGUGACCUUCc 2 19 23 46 [mm9:6:125080042-125080065:+] 0.5073 165 7 -23.04 -0.3513 MIMAT0004861 mmu-miR-877 107932 Chd4 ggGACGCGGUAGAGGAGAug ||| :: :|||||| auCUGAAUUUCUUCCUCUuu 3 19 323 342 [mm9:6:125080342-125080361:+] 0.6912 126 0 -16.84 -0.1472 MIMAT0005851 mmu-miR-1193 107932 Chd4 cuaucauuuugccCACUGGAu ||||||| ccaccacucagcaGUGACCUu 2 9 24 44 [mm9:6:125080043-125080063:+] 0.5073 140 7 -12.21 -0.3203 MIMAT0007868 mmu-miR-1903 107932 Chd4 acaGAGUCCUUCUUCUUCUUCc || || ||| |||||||| gacCUAAGAAAG-AGAAGAAGa 2 20 518 538 [mm9:6:125050935-125050955:+] 0.7147 165 7 -15.15 -0.1644 MIMAT0007868 mmu-miR-1903 107932 Chd4 acaGAGUCCUUC--UUCUUCUUCc | |||| :| ||||||||| ucaCGCAGGUGGCAAAGAAGAAGa 2 20 3668 3691 [mm9:6:125064003-125064026:+] 0.7827 162 7 -18.42 -0.1628 MIMAT0007868 mmu-miR-1903 107932 Chd4 acagaguccuucUUCUUCUUCc ||||||||| aaaauagccuuaAAGAAGAAGa 2 11 4822 4843 [mm9:6:125071971-125071992:+] 0.6919 150 7 -14.48 -0.2557 MIMAT0007873 mmu-miR-1896 107932 Chd4 gaGGAG-UGGGUGGUAGUCUCUc |:|| | || :||||||| auCUUCGAGGCA-AGUCAGAGAa 2 21 4459 4480 [mm9:6:125070961-125070982:+] 0.8181 145 7 -20.09 -0.1804 MIMAT0007876 mmu-miR-1907 107932 Chd4 uggaGGUCU-AGGA--GACGACGAg ::||| ||| :||||||| uuugUUAGACCCCUGAUUGCUGCUa 2 19 706 730 [mm9:6:125051347-125051354,125051471-125051487:+] 0.8577 148 7 -19.72 -0.5976 MIMAT0009392 mmu-miR-1929 107932 Chd4 gagACGAGAU-AUUUCAGGAU-CUu ||:|||: |:| ||||| || ccaUGUUCUGCUGACAUCCUAUGAg 2 21 2652 2676 [mm9:6:125058697-125058721:+] 0.7095 127 0 -16.83 -0.1013 MIMAT0009398 mmu-miR-1934 107932 Chd4 ucuccugcuucgUCCCCUGGUCu || ||||||| agacauugccaaAGAGGACCAGa 2 12 2922 2944 [mm9:6:125059340-125059362:+] 0.7563 147 7 -20.34 -0.3005 MIMAT0009409 mmu-miR-1944 107932 Chd4 uuagucuugaacuguaagUCGUGUCUc |||||||| agccuuaaagaagaagagAGCACAGAa 2 10 4827 4853 [mm9:6:125071976-125072002:+] 0.6919 145 7 -13.53 -0.1770 MIMAT0009409 mmu-miR-1944 107932 Chd4 uuaGUCUUGAACUGUAAGUC-GUGUCUc |||:|: ||| | || |||||| aacCAGGAUGAGAC-UGAAGACACAGAa 2 25 3898 3924 [mm9:6:125064386-125064412:+] 0.7839 130 6 -20.56 -0.1406 MIMAT0009414 mmu-miR-1937b 107932 Chd4 acccccgAGCAGGCCCUa || ||||||| cgugccaUCAUCCGGGAa 2 12 2554 2571 [mm9:6:125058422-125058439:+] 0.7636 147 7 -14.98 -0.1223 MIMAT0009423 mmu-miR-1952 107932 Chd4 gucuuccucCCACCUCu ||||||| ggggacuuuGGUGGAGa 2 9 1873 1889 [mm9:6:125055263-125055279:+] 0.7021 140 7 -18.40 -0.1137 MIMAT0009429 mmu-miR-1937c 107932 Chd4 acccccgAGAAGGCCCUa || ||||||| cgugccaUCAUCCGGGAa 2 12 2554 2571 [mm9:6:125058422-125058439:+] 0.7636 147 7 -14.98 -0.1223 MIMAT0009434 mmu-miR-1961 107932 Chd4 aagauUGAUGAUGGAGu || :||||||| gagacACAGCUACCUCu 2 13 418 434 [mm9:6:125080437-125080453:+] 0.7110 148 7 -12.84 -0.4846 MIMAT0009438 mmu-miR-1965 107932 Chd4 acgcGGUGAUGCCGGGCCGAa :| || :| ||||||| acuuUCUCU-UGUCCCGGCUg 2 18 49 68 [mm9:6:125080068-125080087:+] 0.5007 147 7 -18.02 -0.1271 MIMAT0009459 mmu-miR-1982* 107932 Chd4 ggagggguCCUGGGAG-GGUu |||||||| ||| ggauuaucGGACCCUCACCAa 2 13 666 686 [mm9:6:125051307-125051327:+] 0.8598 124 0 -24.88 -0.1153 MIMAT0011210 mmu-miR-2134 107932 Chd4 cguggggcaaaGGGUUCUg ||||||| cugcuaaaaacCCCAAGAu 2 9 725 743 [mm9:6:125051482-125051500:+] 0.8556 140 7 -12.62 -0.1729 MIMAT0011210 mmu-miR-2134 107932 Chd4 cguggggcaaaGGGUUCUg ||||||| agaagcccaaaCCCAAGAa 2 9 1007 1025 [mm9:6:125051951-125051969:+] 0.6839 140 7 -17.94 -0.1750 MIMAT0011215 mmu-miR-2139 107932 Chd4 cgucaaUGGUCCUCGUCGCGUCGa | ||| ||:|||||||| gagacaAGCAGCAGUAGCGCAGCg 2 19 187 210 [mm9:6:125080206-125080229:+] 0.6539 170 7 -25.74 -0.1516 MIMAT0011215 mmu-miR-2139 107932 Chd4 cgucaaUGGUCCUCGUCG-CGUCGa |||| | ||| ||||| ugcggcACCAUUAUGAGCAGCAGCa 2 19 4070 4094 [mm9:6:125070296-125070320:+] 0.8149 122 0 -24.20 -0.1524 MIMAT0011217 mmu-miR-2141 107932 Chd4 uugaaaagacuGUGGAGGa ||||||| agagugauaucCACCUCCa 2 9 8 26 [mm9:6:125080027-125080045:+] 0.5073 140 7 -12.91 -0.9255 MIMAT0012771 mmu-miR-432 107932 Chd4 gacGGGUGACUA--GAU-GAGGUUCu |||| ||| ||: ||||||| aacCCCA-AGAUUGCUGUCUCCAAGa 2 21 733 757 [mm9:6:125051490-125051514:+] 0.8556 152 7 -23.35 -0.3709 MIMAT0012773 mmu-miR-767 107932 Chd4 acgagUCUGUUGGUACCACGu ||| |:| ||||||| gagggAGA-AGCAAUGGUGCc 2 17 155 174 [mm9:6:125080174-125080193:+] 0.6332 154 7 -15.06 -0.2039 MIMAT0015641 mmu-miR-3470b 107932 Chd4 ggucggaCCAGAUGUCUCACu ||| | ||||||| uuuggggGGUAUUCAGAGUGg 2 15 382 402 [mm9:6:125080401-125080421:+] 0.6912 154 7 -18.79 -0.2942 MIMAT0015641 mmu-miR-3470b 107932 Chd4 ggucggaccagauGUCUCACu ||||||| -------aagaccCAGAGUGa 2 9 1 14 [mm9:6:125080020-125080033:+] 0.5073 140 7 -14.74 -0.6006 MIMAT0000121 mmu-let-7g 107932 Chd4 uuGACAUGUU---UGAUGAUGGAGu ||| :|:| || :||||||| ccCUGGGCGAGACACAGCUACCUCu 2 21 410 434 [mm9:6:125080429-125080453:+] 0.7011 155 7 -19.02 -0.4523 MIMAT0000122 mmu-let-7i 107932 Chd4 uugUCG-UGUUUGAUGAUGGAGu :|| | | || :||||||| cugGGCGAGACACAGCUACCUCu 2 20 412 434 [mm9:6:125080431-125080453:+] 0.7011 154 7 -17.45 -0.4523 MIMAT0000124 mmu-miR-15b 107932 Chd4 acAUUU-GGUACUACACGACGAu ||:| || |||| ||||||| guUAGACCCCUGAU-UGCUGCUa 2 21 709 730 [mm9:6:125051350-125051354,125051471-125051487:+] 0.8577 165 7 -21.43 -0.5550 MIMAT0000128 mmu-miR-30a 107932 Chd4 gaaggucagcuccuaCAAAUGu |||||| gguuuuauuuuguugGUUUACu 2 8 345 366 [mm9:6:125080364-125080385:+] 0.6912 120 6 -7.33 -0.2615 MIMAT0000130 mmu-miR-30b 107932 Chd4 ucgacucacauccuaCAAAUGu |||||| gguuuuauuuuguugGUUUACu 2 8 345 366 [mm9:6:125080364-125080385:+] 0.6912 120 6 -5.51 -0.2570 MIMAT0000147 mmu-miR-135a 107932 Chd4 agugUAUCCUUAUUUUUCGGUAu ||: || :| ||||||| cggaAUGAUAAAGAUAAGCCAUu 2 20 4296 4318 [mm9:6:125070691-125070713:+] 0.7729 155 7 -14.51 -0.1310 MIMAT0000150 mmu-miR-138 107932 Chd4 gcCGGACUAAGUGUU-GUGGUCGa |::||: | |: ||||||| guGUUUGGCAGAAAGUCACCAGCa 2 22 5627 5650 [mm9:6:125078926-125078949:+] 0.8019 148 7 -17.18 -0.1232 MIMAT0000211 mmu-miR-182 107932 Chd4 gccacaCUCAA--GAUGGUAACGGUUu ||||| | : ||||||||| uuggagGAGUUUGCAGACAUUGCCAAa 2 20 2908 2934 [mm9:6:125059326-125059352:+] 0.7563 162 7 -25.79 -0.1579 MIMAT0000224 mmu-miR-194 107932 Chd4 agGUGUACCUCAACGACAAUGu | || | | ||||||| ucCCCACCGUGCGCCUGUUACa 2 21 266 287 [mm9:6:125080285-125080306:+] 0.6726 144 7 -17.67 -0.4950 MIMAT0000225 mmu-miR-195 107932 Chd4 cgguuauaaaGAC--ACGACGAu ||| ||||||| uguuagacccCUGAUUGCUGCUa 2 12 708 730 [mm9:6:125051349-125051354,125051471-125051487:+] 0.8577 142 7 -16.21 -0.5976 MIMAT0000238 mmu-miR-205 107932 Chd4 guCUGAGGCCACCU-UACUUCCu ||:|:: | | ||||||| agGAUUUUUUAGAACAUGAAGGu 2 21 3365 3387 [mm9:6:125060296-125060318:+] 0.6985 147 7 -13.36 -0.1455 MIMAT0000248 mmu-miR-30e 107932 Chd4 gaaggucaguuccuaCAAAUGu |||||| gguuuuauuuuguugGUUUACu 2 8 345 366 [mm9:6:125080364-125080385:+] 0.6912 120 6 -7.33 -0.2638 MIMAT0000366 mmu-miR-290-5p 107932 Chd4 uuucacgggggUAUCAAACUCa | |||||||| aacugggagagAGAGUUUGAGa 2 12 2482 2503 [mm9:6:125058350-125058371:+] 0.7596 147 7 -10.77 -0.1126 MIMAT0000368 mmu-miR-291a-3p 107932 Chd4 cgUGUGUUUCACCUUCGUGAAa :|: || | ||||||||| acGCGGAAUUUCGAAGCACUUa 2 21 3088 3109 [mm9:6:125059819-125059840:+] 0.7658 160 7 -19.31 -0.1474 MIMAT0000369 mmu-miR-292-5p 107932 Chd4 guUUUCUCGGGGGUCAAACUCa |:|||| |||||||| ggAGAGAG-----AGUUUGAGa 2 21 2487 2503 [mm9:6:125058355-125058371:+] 0.7596 146 7 -16.26 -0.1082 MIMAT0000372 mmu-miR-294 107932 Chd4 ugUGUGUUUU--CCCUUCGUGAAa ||:|::|| ||||||||| ucACGCGGAAUUUCGAAGCACUUa 2 21 3086 3109 [mm9:6:125059817-125059840:+] 0.7658 159 7 -22.91 -0.1474 MIMAT0000373 mmu-miR-295 107932 Chd4 ucUGAGUUUU-CAUCAUCGUGAAa || |::|| | | ||||||| ucACGCGGAAUUUCGAAGCACUUa 2 22 3086 3109 [mm9:6:125059817-125059840:+] 0.7658 156 7 -11.42 -0.1474 MIMAT0000380 mmu-miR-302a 107932 Chd4 agUG-GUUUUGUACCUUCGUGAAu || |::||: | ||||||||| ucACGCGGAAUUUCGAAGCACUUa 2 22 3086 3109 [mm9:6:125059817-125059840:+] 0.7658 168 7 -24.01 -0.1474 MIMAT0000383 mmu-let-7d 107932 Chd4 uuGAUACG--UUG-GAUGAUGGAGa ||: || :|| | :||||||| ccCUGGGCGAGACACAGCUACCUCu 2 21 410 434 [mm9:6:125080429-125080453:+] 0.7011 150 7 -20.10 -0.4590 MIMAT0000385 mmu-miR-106a 107932 Chd4 gaUGGACGUGACAAUCGU-GAAAc :|: | |||||:||| |||| caGCUACCUCUGUUGGCAUCUUUu 2 22 424 447 [mm9:6:125080443-125080466:+] 0.7110 133 0 -24.31 -0.8983 MIMAT0000386 mmu-miR-106b 107932 Chd4 uagacGUGACAGUCGU-GAAAu | ||||::||| |||| gcuacCUCUGUUGGCAUCUUUu 2 17 426 447 [mm9:6:125080445-125080466:+] 0.7110 128 0 -15.11 -0.8983 MIMAT0000514 mmu-miR-30c 107932 Chd4 cgacucucacauccuaCAAAUGu |||||| ugguuuuauuuuguugGUUUACu 2 8 344 366 [mm9:6:125080363-125080385:+] 0.6912 120 6 -5.78 -0.2570 MIMAT0000515 mmu-miR-30d 107932 Chd4 gaaggucagccccuaCAAAUGu |||||| gguuuuauuuuguugGUUUACu 2 8 345 366 [mm9:6:125080364-125080385:+] 0.6912 120 6 -7.89 -0.2615 MIMAT0000521 mmu-let-7a 107932 Chd4 uuGAUAUGUUGGAUGAUGGAGu | | ||| | :||||||| ggCGAGACA--CAGCUACCUCu 2 21 415 434 [mm9:6:125080434-125080453:+] 0.7110 149 7 -14.95 -0.4745 MIMAT0000522 mmu-let-7b 107932 Chd4 uuggUGUGUUG-GAUGAUGGAGu :|: :|| | :||||||| cuggGCGAGACACAGCUACCUCu 2 19 412 434 [mm9:6:125080431-125080453:+] 0.7011 149 7 -17.44 -0.4556 MIMAT0000523 mmu-let-7c 107932 Chd4 uuGGUAUGUUGGAUGAUGGAGu | | ||| | :||||||| ggCGAGACA--CAGCUACCUCu 2 21 415 434 [mm9:6:125080434-125080453:+] 0.7110 149 7 -15.65 -0.4745 MIMAT0000524 mmu-let-7e 107932 Chd4 uuGAUAUGUUGGAGGAUGGAGu | | ||| | ||||||| ggCGAGACA--CAGCUACCUCu 2 21 415 434 [mm9:6:125080434-125080453:+] 0.7110 145 7 -14.17 -0.4745 MIMAT0000525 mmu-let-7f 107932 Chd4 uuGAUAUGUUAGAUGAUGGAGu | | ||| | :||||||| ggCGAGACA--CAGCUACCUCu 2 21 415 434 [mm9:6:125080434-125080453:+] 0.7110 149 7 -13.74 -0.4745 MIMAT0000526 mmu-miR-15a 107932 Chd4 guGUUUGGUAAUACACGACGAu :|:||| |: ||||||| guUAGACCCCUGAUUGCUGCUa 2 21 709 730 [mm9:6:125051350-125051354,125051471-125051487:+] 0.8577 156 7 -19.24 -0.5866 MIMAT0000527 mmu-miR-16 107932 Chd4 gcgguuauaaaugcACGACGAu ||||||| guuagaccccugauUGCUGCUa 2 9 709 730 [mm9:6:125051350-125051354,125051471-125051487:+] 0.8577 140 7 -13.42 -0.5976 MIMAT0000529 mmu-miR-20a 107932 Chd4 gaUGGACGUGAUAUUCGU-GAAAu :|: | ||:| :||| |||| caGCUACCUCUGUUGGCAUCUUUu 2 22 424 447 [mm9:6:125080443-125080466:+] 0.7110 121 0 -19.12 -0.9017 MIMAT0000531 mmu-miR-22 107932 Chd4 ugucAAGAAGUUGAC-CGUCGAa | | | |||| |||||| cggcUCCAGCCACUGAGCAGCUa 2 19 465 487 [mm9:6:125080484-125080506:+] 0.7110 122 6 -17.80 -0.9998 MIMAT0000545 mmu-miR-98 107932 Chd4 uuGUUAUGUUGAAUGAUGGAGu |:| || || :||||||| ggCGAGAC-AC-AGCUACCUCu 2 21 415 434 [mm9:6:125080434-125080453:+] 0.7110 148 7 -15.74 -0.4745 MIMAT0000546 mmu-miR-103 107932 Chd4 agUAUC-GGGACAUGUUACGACGa ||:| :|:| : |||||||| ugAUGGAUCUUAAGAAAUGCUGCa 2 22 3152 3175 [mm9:6:125059883-125059906:+] 0.8190 156 7 -16.20 -0.2814 MIMAT0000548 mmu-miR-322 107932 Chd4 agGUUUUGUACUUAACGACGAc :|:| | :||||||||| guUAGACCCCUGAUUGCUGCUa 2 21 709 730 [mm9:6:125051350-125051354,125051471-125051487:+] 0.8577 156 7 -14.20 -0.5903 MIMAT0000559 mmu-miR-326 107932 Chd4 ugaccuccuUCCCGGGUCUCc | | ||||||| ---------AAGACCCAGAGu 2 13 1 12 [mm9:6:125080020-125080031:+] 0.5073 144 7 -13.77 -0.4934 MIMAT0004642 mmu-miR-330 107932 Chd4 cggauucugugUCCGGGUCUCu || ||||||| ----------aAGACCCAGAGu 2 12 1 12 [mm9:6:125080020-125080031:+] 0.5073 147 7 -18.07 -0.4900 MIMAT0000597 mmu-miR-346 107932 Chd4 ucUCCGUCCGUGAGCCCG-UCUGu :| |:||| | :|||| |||| ugGGCCGGGCCCCUGGGCGAGACa 2 22 400 423 [mm9:6:125080419-125080442:+] 0.7011 133 0 -29.62 -0.4309 MIMAT0000612 mmu-miR-135b 107932 Chd4 agugUAUCCUUACUUUUCGGUAu ||: || || ||||||| cggaAUGAUAAAGAUAAGCCAUu 2 20 4296 4318 [mm9:6:125070691-125070713:+] 0.7729 159 7 -16.98 -0.1310 MIMAT0000647 mmu-miR-107 107932 Chd4 acUAUC-GGGACAUGUUACGACGa ||:| :|:| : |||||||| ugAUGGAUCUUAAGAAAUGCUGCa 2 22 3152 3175 [mm9:6:125059883-125059906:+] 0.8190 156 7 -19.78 -0.2814 MIMAT0000649 mmu-miR-17 107932 Chd4 gaUGGACGUGACAUUCGU-GAAAc :|: | |||| :||| |||| caGCUACCUCUGUUGGCAUCUUUu 2 22 424 447 [mm9:6:125080443-125080466:+] 0.7110 125 0 -20.21 -0.8983 MIMAT0000661 mmu-miR-214 107932 Chd4 ugacggacagacACGGACGACa | ||||||| gcaauggugcccUUCCUGCUGg 2 11 164 185 [mm9:6:125080183-125080204:+] 0.6539 142 7 -17.08 -0.7241 MIMAT0000663 mmu-miR-218 107932 Chd4 uguACCAAUCUAGUUCGU-GUu ||| ||| |||||| || ugcUGGAGAGA-CAAGCAGCAg 2 19 180 200 [mm9:6:125080199-125080219:+] 0.6539 124 0 -17.97 -0.3241 MIMAT0000677 mmu-miR-7a 107932 Chd4 ugUUGUUUUAGU-GAU---CAGAAGGu || ||||| | ||: |||||| cgAAGAAAAUGAUCUGAAUUUCUUCCu 2 22 312 338 [mm9:6:125080331-125080357:+] 0.6912 127 6 -12.35 -0.1603 MIMAT0000678 mmu-miR-7b 107932 Chd4 ugUUGUUUUAGUGUU-CAGAAGGu || | :||| || |||||| agAAAAUGAUCUGAAUUUCUUCCu 2 22 315 338 [mm9:6:125080334-125080357:+] 0.6912 128 6 -9.14 -0.1603 MIMAT0000708 mmu-miR-363 107932 Chd4 augUCUACCUAUGGCA-CGUUAa | ||| || ||| ||||| gugAAAUGAAU--CGUGGCAAUu 2 20 5449 5469 [mm9:6:125073638-125073658:+] 0.7628 120 0 -12.28 -0.1245 MIMAT0004745 mmu-miR-384-5p 107932 Chd4 uguaacggauccuuaaCAAAUGu |||||| ugguuuuauuuuguugGUUUACu 2 8 344 366 [mm9:6:125080363-125080385:+] 0.6912 120 6 -6.61 -0.2615 MIMAT0003187 mmu-miR-20b 107932 Chd4 gaUGGACGUGAUACUCGU-GAAAc :|: | ||:| :||| |||| caGCUACCUCUGUUGGCAUCUUUu 2 22 424 447 [mm9:6:125080443-125080466:+] 0.7110 121 0 -18.20 -0.9017 MIMAT0003374 mmu-miR-302b 107932 Chd4 gaugaUUUUGUACCUUCGUGAAu ::||: | ||||||||| cacgcGGAAUUUCGAAGCACUUa 2 19 3087 3109 [mm9:6:125059818-125059840:+] 0.7658 162 7 -16.39 -0.1474 MIMAT0003377 mmu-miR-302d 107932 Chd4 ugUGAG-UUUGUACCUUCGUGAAu || | :||: | ||||||||| ucACGCGGAAUUUCGAAGCACUUa 2 22 3086 3109 [mm9:6:125059817-125059840:+] 0.7658 164 7 -21.22 -0.1474 MIMAT0003727 mmu-miR-374 107932 Chd4 gugaaucguccaacAUAAUAUa ||||||| acugcggacacaguUAUUAUAu 2 9 3526 3547 [mm9:6:125063551-125063572:+] 0.7982 140 7 -7.69 -0.1207 MIMAT0003729 mmu-miR-216b 107932 Chd4 agUGUAAAC-GGACG-UCU-CUAAa |::|| | |:||| ||| |||| agAUGUUGGACUUGCUAGAGGAUUu 2 21 3347 3371 [mm9:6:125060278-125060302:+] 0.6474 126 0 -13.18 -0.1231 MIMAT0003893 mmu-miR-761 107932 Chd4 acacagucaaaGUGGGACGACg | :||||||| gcaauggugccCUUCCUGCUGg 2 12 164 185 [mm9:6:125080183-125080204:+] 0.6539 143 7 -16.01 -0.7315 MIMAT0003450 mmu-miR-488 107932 Chd4 cugguucUUUGUCGGAAAGUu || ||||||||| cauccucAAUGAGCCUUUCAa 2 15 5426 5446 [mm9:6:125073615-125073635:+] 0.7854 154 7 -16.37 -0.1126 MIMAT0003453 mmu-miR-497 107932 Chd4 auGUUUGGUGUCACACGACGAc :|:||| | | ||||||| guUAGACCCCUGAUUGCUGCUa 2 21 709 730 [mm9:6:125051350-125051354,125051471-125051487:+] 0.8577 160 7 -16.41 -0.5830 MIMAT0003456 mmu-miR-495 107932 Chd4 uucuucacgugguacAAACAAa |||||| ucuuuuugguuuuauUUUGUUg 2 8 338 359 [mm9:6:125080357-125080378:+] 0.6912 120 6 -5.22 -0.2520 MIMAT0003486 mmu-miR-491 107932 Chd4 ggAGUACCU---UCCCA--AGGGGUGa |: |||| || | ||||||| ccUUCUGGACCCUGGCUUCUCCCCACc 2 21 247 273 [mm9:6:125080266-125080292:+] 0.6539 142 7 -23.49 -0.2241 MIMAT0004853 mmu-miR-874 107932 Chd4 agccagggagcccgGUCCCGUc ||||||| aagacacagaauugCAGGGCAu 2 9 3914 3935 [mm9:6:125064402-125064423:+] 0.7839 140 7 -15.81 -0.1160

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G044937 Chd4 Mus musculus 107932 19536157 0 0 R52665; MOUSE$CHD4_01; Binding factors: mmu-miR-103-3p , mmu-miR-107-3p , mmu-miR-15a-5p , mmu-miR-15b-5p , mmu-miR-16-5p , mmu-miR-1906 , mmu-miR-1907 , mmu-miR-195a-5p , mmu-miR-322-5p , mmu-miR-497a-5p , mmu-miR-761

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Chd4 mmu-miR-193star beg:0 end:9 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& |||||||| &5' --------------AAGACCCA 3' Chd4 mcmv-miR-m107-1-5p beg:26 end:43 pic:3' CCACTGAGCTCTGCTCACTGGC 5'& |||| || | ||||||| &5' ----ACTC-AG-C-AGTGACC- 3' Chd4 mmu-miR-376bstar beg:3 end:22 pic:3' ATTGGTATCTTCCTTATAGGTG 5'& ||| .|| |||||||| &5' ---CCA---GAGTGATATCCAC 3' Chd4 mmu-miR-376cstar beg:6 end:22 pic:3' ATTTGTATCTTCCTTATAGGTG 5'& .|| |||||||| &5' ---------GAGTGATATCCAC 3' Chd4 mmu-miR-767 beg:155 end:174 pic:3' ACGAGTCTGTTGG-TACCACGT 5'& .|| || | ||||||| &5' -----GGAGAAGCAATGGTGC- 3' Chd4 mmu-miR-2141 beg:16 end:26 pic:3' TTGAAAAGACTGTGGAGGA 5'& ||||||| &5' -----------CACCTCC- 3' Chd4 mmu-miR-3470b beg:0 end:15 pic:3' GGTC-GGACCAGATGTCTCACT 5'& || || |||||||| &5' --AGACC-------CAGAGTGA 3' Chd4 mmu-miR-145star beg:450 end:460 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||||||| &5' --------------CCAGGAA- 3' Chd4 mmu-miR-326 beg:2 end:12 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& ||||||| &5' -------------CCCAGAG- 3' Chd4 mmu-miR-1965 beg:50 end:68 pic:3' ACGCGGTGATGCCGGGCCGAA 5'& .| || .| ||||||| &5' ----TCTCT-TGTCCCGGCT- 3' Chd4 mmu-miR-214 beg:168 end:185 pic:3' TGACGGACAGACACGGACGACA 5'& |||| || ||||||| &5' --TGCC---CTT--CCTGCTG- 3' Chd4 mmu-let-7a beg:417 end:434 pic:3' TTGATATGTTG-GATGATGGAGT 5'& .|| | .||||||| &5' --------GACACAGCTACCTC- 3' Chd4 mmu-let-7c beg:417 end:434 pic:3' TTGGTATGTTG-GATGATGGAGT 5'& .|| | .||||||| &5' --------GACACAGCTACCTC- 3' Chd4 mmu-let-7b beg:418 end:434 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& ||||| .||||||| &5' ----ACACA----GCTACCTC- 3' Chd4 mmu-miR-1961 beg:420 end:434 pic:3' AAGATTGATGATGGAGT 5'& || .||||||| &5' -----ACAGCTACCTC- 3' Chd4 mmu-miR-2139 beg:192 end:210 pic:3' CGTCAATGGTCCTCGTCGCGTCGA 5'& ||| ||.|||||||| &5' --------CAGCAGTAGCGCAGC- 3' Chd4 mmu-miR-1193 beg:30 end:44 pic:3' CTATCATTTTGCCCACTGGAT 5'& |.| ||||||| &5' --------AGCA-GTGACCT- 3' Chd4 mcmv-miR-m01-1 beg:363 end:382 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& ||.| .||| |||||||.| &5' ---TTTG-TGTT-TTCTCCTTT 3' Chd4 mcmv-miR-M23-2 beg:6 end:27 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& | |||. ||.||| &5' --GAGTGATATCCACCTCCA- 3' Chd4 mcmv-miR-M87-1 beg:51 end:71 pic:3' CGACGGCGACGGCTGCCGACGGA 5'& |. .||.| |||||||| &5' ----CTCTTGTCC-CGGCTGCC- 3' Chd4 mcmv-miR-M87-1 beg:228 end:250 pic:3' CGACGGCGACGGCTG-CCGACGGA 5'& ||.| || |.| |||||||| &5' ---GCTG--GCGGGCTGGCTGCCT 3' Chd4 mghv-miR-M1-3 beg:31 end:54 pic:3' TTCG-CGTTGAGGACGAGTGGAG 5'& ||| | || |.| |||||.|. &5' -AGCAGTGAC-CTTCCTCACTTT 3' Chd4 mmu-let-7d beg:413 end:435 pic:3' TTGATACGTTG---GATGATGGAGA 5'& ||.| | .|||||||| &5' ------GCGAGACACAGCTACCTCT 3' Chd4 mmu-let-7e beg:413 end:434 pic:3' TTGATATGTTGGAGGATGGAGT 5'& ..| || || ||||||| &5' GGCGAGAC-ACAG-CTACCTC- 3' Chd4 mmu-let-7f beg:413 end:434 pic:3' TTGATATGTTAGATGATGGAGT 5'& ..| ||| | .||||||| &5' GGCGAGACA--CAGCTACCTC- 3' Chd4 mmu-let-7g beg:413 end:434 pic:3' TTGACATGTT---TGATGATGGAGT 5'& | |.| || .||||||| &5' ----GGGCGAGACACAGCTACCTC- 3' Chd4 mmu-let-7i beg:413 end:434 pic:3' TTGTCGTGTTTGA--TGATGGAGT 5'& .||. |.|| .||||||| &5' ---GGCG-AGACACAGCTACCTC- 3' Chd4 mmu-let-7istar beg:190 end:212 pic:3' TCGTTCCGTCATCGAA-CGCGTC 5'& |||| |||||||| |||| &5' AGCA--GCAGTAGCGCAGCGC-- 3' Chd4 mmu-miR-1196 beg:141 end:163 pic:3' TCCG--TCTCCGTCCATCTAAA 5'& .||| .|||| ||| ||| &5' GGGCAGGGAGGGAGGGAGA--- 3' Chd4 mmu-miR-1224 beg:14 end:37 pic:3' GAGGTGGAGG-GGTCAGGAGTG 5'& ||||||||| ||| || || &5' -TCCACCTCCACCACTCAGCA- 3' Chd4 mmu-miR-130bstar beg:137 end:158 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& |||| ..||||||..||| &5' ---AGTGGGGCAGGGAGGGAG- 3' Chd4 mmu-miR-133b beg:62 end:84 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& .|||| ||||.|||.| &5' -GGCTGCCCCT-GGGGGCCAGA 3' Chd4 mmu-miR-135astar beg:458 end:480 pic:3' GCGGT-GCCGAGGTTAGG-GATAT 5'& ||| ||||||||. || ||. &5' --CCAGCGGCTCCAG-CCACTG-- 3' Chd4 mmu-miR-185 beg:364 end:380 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& .||. ||.||||| &5' -------TTGTG-TTTTCTCC- 3' Chd4 mmu-miR-18a beg:429 end:446 pic:3' GATAGACGTGATCTACGTGGAAT 5'& ||||. |||.||| &5' ---TCTGTTG-----GCATCTT- 3' Chd4 mmu-miR-18astar beg:133 end:150 pic:3' GTCTTCCTCGTGA-ATCCCGTCA 5'& ||.| |.|||||| &5' --------GCGCAGTGGGGCAG- 3' Chd4 mmu-miR-1903 beg:139 end:162 pic:3' ACAGAGTCCTTCTTCTTCTTCC 5'& || ||||.|| .||.|.|| &5' TGGGGCAGGGAG-GGAGGGAG- 3' Chd4 mmu-miR-1928 beg:226 end:246 pic:3' CTCGACCGTTACATCGA 5'& ||||||||.. |.||| &5' GAGCTGGCGGGCTGGCT 3' Chd4 mmu-miR-1935 beg:416 end:438 pic:3' TCTCTAGG-CGGTCGGAGACGGA 5'& |||| | ||.| ||||||.. &5' -GAGACACAGCTA-CCTCTGTT- 3' Chd4 mmu-miR-194 beg:266 end:288 pic:3' AGGT-GTACCTCAACGACAATGT 5'& ||| |.|| |||||||| &5' -CCACCGTGCGC---CTGTTACA 3' Chd4 mmu-miR-1952 beg:142 end:163 pic:3' GTC-TTCCTCCCA-CCTCT 5'& .| |.|||||| ||||| &5' -GGCAGGGAGGGAGGGAGA 3' Chd4 mmu-miR-1953 beg:38 end:57 pic:3' GTCTTCGGACTCT-TGAAAGGGT 5'& ||| ||||||.| &5' ------CCTTCCTCACTTTCTC- 3' Chd4 mmu-miR-1956 beg:399 end:418 pic:3' AGGCGACTGAGTC-GGGACCTGA 5'& |.| .| ||||||.| &5' ------GGCCGGGCCCCTGGGC- 3' Chd4 mmu-miR-196a beg:409 end:433 pic:3' GGGT--TGTTGTACTTTGATGGAT 5'& ||| .|.| | |.|||||| &5' CCCTGGGCGAGACACAGCTACCT- 3' Chd4 mmu-miR-1971 beg:97 end:113 pic:3' AGAGTCGGGTCGGAAATG 5'& .|| ||||| .||| &5' -TTCTGCCCA-TCTT--- 3' Chd4 mmu-miR-206 beg:86 end:109 pic:3' GGTGTGTGAAGGAATGTAAGGT 5'& || ..| ||||||| | ||| &5' CCTTGC-CTTCCTT-CTGCCCA 3' Chd4 mmu-miR-207 beg:140 end:166 pic:3' CTCCC--TCCTCTCGGTCCTCTTCG 5'& .||| .||||.| .|||||||| &5' -GGGGCAGGGAGGGA-GGGAGAAGC 3' Chd4 mmu-miR-2132 beg:200 end:217 pic:3' GTAGCGCAGTTGTGGGCGG 5'& ||| ||.|.|||||| &5' ----GCG-CAGCGCCCGCC 3' Chd4 mmu-miR-2134 beg:439 end:459 pic:3' CGTGGGGCAAAG--GGTTCTG 5'& ||.|. || |||.|| &5' -CATCTTTTTAATACCAGGA- 3' Chd4 mmu-miR-2146 beg:161 end:179 pic:3' GTG-TACCTTGGGAAGAGGTG 5'& .| |||| .|||||| |. &5' -GCAATGGTGCCCTTC-CT-- 3' Chd4 mmu-miR-2861 beg:299 end:313 pic:3' GGCGGGCGGCGGTCCGGGG 5'& |.|||||||.| &5' -------CTGCCAGGCTC- 3' Chd4 mmu-miR-2861 beg:206 end:227 pic:3' GGCGGGC-GGCGGTCCGGGG 5'& |||||| |||||| |. | &5' -CGCCCGCCCGCCATGTGC- 3' Chd4 mmu-miR-298 beg:415 end:438 pic:3' CCCTTCT-TGTCGGGAGGAGACGG 5'& .||| |||||. ||||||.. &5' ---GAGACACAGCTA-CCTCTGTT 3' Chd4 mmu-miR-3099 beg:41 end:62 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& |||.|| ||.||||| |.| &5' TCCTCA--CTTTCTCTTGTC-- 3' Chd4 mmu-miR-325star beg:165 end:186 pic:3' TGTGAATGACT-CGT---GGATGATCC 5'& ||. || |||.||.| &5' --------TGGTGCCCTTCCTGCTGG- 3' Chd4 mmu-miR-337-3p beg:215 end:236 pic:3' TCCGTAGTATA--TCCTCGACTT 5'& || |||.| ||||||||. &5' --GC--CATGTGCAGGAGCTGG- 3' Chd4 mmu-miR-338-3p beg:177 end:187 pic:3' GTTGTTTTAGTGACTACGACCT 5'& ||||||| &5' ---------------TGCTGGA 3' Chd4 mmu-miR-343 beg:141 end:163 pic:3' AGACCCGTGTA--CTTCCCTCT 5'& ||||| . |.||||||| &5' ---GGGCAGGGAGGGAGGGAGA 3' Chd4 mmu-miR-3470a beg:380 end:402 pic:3' GGTCGGACCAGATGTTTCACT 5'& . | ||| ||.||||. &5' TTGGGG-GGTATTCAGAGTGG 3' Chd4 mmu-miR-3470b beg:380 end:402 pic:3' GGTCGGACCAGATGTCTCACT 5'& . | ||| |||||||. &5' TTGGGG-GGTATTCAGAGTGG 3' Chd4 mmu-miR-365 beg:378 end:395 pic:3' TATTCCTAAAAATCCCCGTAAT 5'& |||| .||||.||| &5' -------TTTTGGGGGGTATT- 3' Chd4 mmu-miR-423-5p beg:161 end:179 pic:3' TTTCAGAGCGAGAG-ACGGGGAGT 5'& || |||||.|| &5' --------GCAATGGTGCCCTTC- 3' Chd4 mmu-miR-483star beg:140 end:162 pic:3' TTCTG-CCCTCCCCTCCTCACT 5'& ..|.| ||||||| |||| &5' GGGGCAGGGAGGGAGGGAG--- 3' Chd4 mmu-miR-486 beg:215 end:231 pic:3' GAGCCCCGTCGAGT-CATGTCCT 5'& || || ||.||||| &5' ---------GC-CATGTGCAGGA 3' Chd4 mmu-miR-491 beg:253 end:273 pic:3' GGAGTACCTTCCCAAGGGGTGA 5'& || | ||| ||||||| &5' CC-C-TGGCTTC--TCCCCAC- 3' Chd4 mmu-miR-493 beg:25 end:46 pic:3' GGACCGTGTGTCATC-CTGGAAGT 5'& ||| ||| || ||||||| &5' -----CACTCAGCAGTGACCTTC- 3' Chd4 mmu-miR-500 beg:294 end:314 pic:3' ACTTGGGAACGGGTCCACGTAA 5'& ||.|..| || ||||| |. &5' TGGATTC-TG-CCAGGCTCG-- 3' Chd4 mmu-miR-540-5p beg:72 end:94 pic:3' TGTCTCAGTCTCCCACTGGGAAC 5'& .|.| ||||| |||||||| &5' --GGGGCCAGAGA--GACCCTTG 3' Chd4 mmu-miR-546 beg:14 end:30 pic:3' CTGAGGCAC-GGTGGTA 5'& ||| |||||| &5' ---TCCACCTCCACCA- 3' Chd4 mmu-miR-592 beg:413 end:426 pic:3' TGTAGTAGCGTATAACTGTGTTA 5'& ||. ||||||. &5' --------GCGA---GACACAG- 3' Chd4 mmu-miR-668 beg:0 end:17 pic:3' CCATCACCCGGCTCGG-CTCACTGT 5'& || || ||||||.| &5' -----------GACCCAGAGTGATA 3' Chd4 mmu-miR-670 beg:134 end:153 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& |.|| |||||| &5' -----CGCAGTGGGGCAGGGA- 3' Chd4 mmu-miR-671-5p beg:247 end:267 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& || | |||| ||||||. &5' -TCTGGACCCT----GGCTTCT- 3' Chd4 mmu-miR-683 beg:182 end:204 pic:3' CTC-CTGTGTCGAATGTCGTCC 5'& ||| |||| ||| .|||.|| &5' GAGAGACA-AGCA-GCAGTAG- 3' Chd4 mmu-miR-691 beg:439 end:460 pic:3' AAAAGACGGAGAGAA------GTCCTTA 5'& |||.|| |||||| &5' ---------TCTTTTTAATACCAGGAA- 3' Chd4 mmu-miR-698 beg:145 end:164 pic:3' TCCCTTCCTTTGCTCTTAC 5'& |||||.|||.. ||||| &5' AGGGAGGGAGG-GAGAA-- 3' Chd4 mmu-miR-705 beg:258 end:281 pic:3' ACGGGT-GGGGTGGAGGGTGG 5'& ||.. ||||||| . |.|| &5' -GCTTCTCCCCACCGTGCGCC 3' Chd4 mmu-miR-705 beg:14 end:36 pic:3' ACGGGTGG-GGTGGAGGGTGG 5'& .||||| ||||| |.|| | &5' --TCCACCTCCACCACTCAGC 3' Chd4 mmu-miR-709 beg:94 end:115 pic:3' AGGAGGACGGAGACGGAGG 5'& ||||.||||| | |.||. &5' TCCTTCTGCCCAT-CTTCT 3' Chd4 mmu-miR-741 beg:424 end:448 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& |||| ||||||||.|. &5' -CTACCTCTGTTGGCATCTTTT- 3' Chd4 mmu-miR-743b-5p beg:463 end:484 pic:3' ACTAC-CTGTGGTCA--GACTTGT 5'& | |.| |||| ||||.|| &5' ----GCGGCTCCAGCCACTGAGCA 3' Chd4 mmu-miR-744 beg:122 end:138 pic:3' ACGACAATCGGGATCGGGGCGT 5'& .| | |||||.|| &5' -------GGAAC-AGCCCTGC- 3' Chd4 mmu-miR-758 beg:271 end:290 pic:3' ATCACCTGGTCCAGTGTTT 5'& ||| .|| ||.||||| &5' --GTGCGCCT-GTTACAAA 3' Chd4 mmu-miR-759 beg:343 end:371 pic:3' CAGTTTT-AACAAAC--GTGAGACG 5'& ||. ||||| .|||.||. &5' GTTTTATTTTGTTGGTTTACTTTGT 3' Chd4 mmu-miR-760 beg:67 end:90 pic:3' AGGGGTGTCTGGG-TCTC-GGC 5'& |||.. .|.|| |||| || &5' -CCCTGGGGGCCAGAGAGACC- 3' Chd4 mmu-miR-871 beg:310 end:331 pic:3' GTACTGACCGTGATTAGACTTAT 5'& || |.|||||||| &5' ---GAAGAAAA-TGATCTGAAT- 3' Chd4 mmu-miR-872 beg:24 end:45 pic:3' GGACTTGA-TTGTTCATTGGAA 5'& || ||| |.| |||.||||| &5' CC---ACTCAGC-AGTGACCTT 3' Chd4 mmu-miR-877 beg:253 end:271 pic:3' GGGACGCGGTAGAGGAGATG 5'& ||||| ||. ||||| | &5' CCCTG-GCT-TCTCCCC--- 3' Chd4 mmu-miR-877 beg:85 end:106 pic:3' GGGACGCGGTAGAGGAGATG 5'& |||| .||| || |.|||.| &5' CCCT-TGCCTTC-CTTCTGC 3' Chd4 mmu-miR-877 beg:98 end:115 pic:3' GGGACGCGGTAGAGGAGATG 5'& .|||| ||||||.|| &5' -TCTGC-CCATCTTCT---- 3' Chd4 mmu-miR-881star beg:35 end:58 pic:3' TCTACACTGACAAT----AGAGAGAC 5'& ||||| |.||||| &5' ----GTGACCTTCCTCACTTTCTCT- 3' Chd4 mmu-miR-883a-5p beg:27 end:37 pic:3' CATTGACGATGAAGAGAGTCGT 5'& ||||||| &5' ---------------CTCAGCA 3' Chd4 mmu-miR-92astar beg:254 end:274 pic:3' CATTACGG--TGGTTAGGGGTGGA 5'& || .|. |||||||| &5' ------CCTGGCTTCTCCCCACC- 3' Chd4 mmu-miR-93star beg:27 end:39 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& ||||||||| &5' -------------CTCAGCAGT 3' Chd4 mmu-miR-98 beg:414 end:434 pic:3' TTGTTATGTTGAATGATGGAGT 5'& .|.| ||| .||||||| &5' -GCGAGACACA--GCTACCTC- 3' Chd4 mcmv-miR-m01-2 beg:40 end:59 pic:3' TGGCAAGGTTGGGCTAAGAGAAG 5'& || |||| |. ||||||| &5' -CC-TTCCTCACT--TTCTCTT- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Chd4 RAID00034775 mmu-miR-7036b-3p miRNA MIMAT0029809 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00163552 mmu-miR-1193-3p miRNA MIMAT0005851 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00180593 mmu-miR-6997-5p miRNA MIMAT0027896 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00243761 mmu-miR-205-5p miRNA MIMAT0000238 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00267775 mmu-miR-302d-3p miRNA MIMAT0003377 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00326316 mmu-miR-290a-5p miRNA MIMAT0000366 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00457753 mmu-miR-216b-5p miRNA MIMAT0003729 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00473606 mmu-miR-743a-5p miRNA MIMAT0017263 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00673726 mmu-miR-218-5p miRNA MIMAT0000663 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00675137 mmu-miR-194-5p miRNA MIMAT0000224 Chd4 mRNA 107932 Prediction 0.2381 Chd4 RAID00710080 mmu-miR-30b-5p miRNA MIMAT0000130 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00712171 mmu-miR-6954-5p miRNA MIMAT0027808 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00737380 mmu-let-7e-5p miRNA MIMAT0000524 Chd4 mRNA 107932 Prediction 0.2381 Chd4 RAID00780172 mmu-miR-370-5p miRNA MIMAT0017174 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00873148 mmu-miR-138-5p miRNA MIMAT0000150 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00897201 mmu-miR-7054-5p miRNA MIMAT0028012 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID00906066 mmu-miR-1843b-5p miRNA MIMAT0019345 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01013568 mmu-miR-324-3p miRNA MIMAT0000556 Chd4 mRNA 107932 NGS (Next Generation Sequencing) 0.5483 Chd4 RAID01078305 mmu-miR-106b-5p miRNA MIMAT0000386 Chd4 mRNA 107932 CLIP-seq//Prediction 0.6308 Chd4 RAID01098489 mmu-miR-1961 miRNA MIMAT0009434 Chd4 mRNA 107932 Prediction 0.2202 Chd4 RAID01155567 mmu-miR-363-3p miRNA MIMAT0000708 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01164070 mmu-miR-322-5p miRNA MIMAT0000548 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01192965 mmu-miR-326-5p miRNA MIMAT0017027 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01207002 mmu-miR-20b-5p miRNA MIMAT0003187 Chd4 mRNA 107932 CLIP-seq//Prediction 0.6308 Chd4 RAID01217576 mmu-miR-486b-3p miRNA MIMAT0014944 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01246654 mmu-let-7b-5p miRNA MIMAT0000522 Chd4 mRNA 107932 Prediction 0.2381 Chd4 RAID01280693 mmu-miR-346-5p miRNA MIMAT0000597 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01283967 mmu-miR-874-3p miRNA MIMAT0004853 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01340603 mmu-miR-384-5p miRNA MIMAT0004745 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01357715 mmu-miR-7a-5p miRNA MIMAT0000677 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01372995 mmu-miR-16-5p miRNA MIMAT0000527 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01393121 mmu-miR-20a-5p miRNA MIMAT0000529 Chd4 mRNA 107932 CLIP-seq//Prediction 0.6308 Chd4 RAID01457295 mmu-miR-6966-3p miRNA MIMAT0027835 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01485781 mmu-miR-17-5p miRNA MIMAT0000649 Chd4 mRNA 107932 CLIP-seq//Prediction 0.6308 Chd4 RAID01501462 mmu-miR-5622-3p miRNA MIMAT0022372 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01544979 mmu-miR-98-5p miRNA MIMAT0000545 Chd4 mRNA 107932 Prediction 0.2455 Chd4 RAID01582761 mmu-miR-23b-5p miRNA MIMAT0016980 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01594778 mmu-miR-182-5p miRNA MIMAT0000211 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01628785 mmu-miR-30a-5p miRNA MIMAT0000128 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01653846 mmu-miR-135b-5p miRNA MIMAT0000612 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01708562 mmu-miR-30d-5p miRNA MIMAT0000515 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01718551 mmu-miR-761 miRNA MIMAT0003893 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID01914692 mmu-miR-6979-3p miRNA MIMAT0027861 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02026073 mmu-miR-294-3p miRNA MIMAT0000372 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02084059 mmu-miR-15b-5p miRNA MIMAT0000124 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02102686 mmu-miR-3473c miRNA MIMAT0020614 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02102868 mmu-miR-1964-5p miRNA MIMAT0017349 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02112342 mmu-let-7g-5p miRNA MIMAT0000121 Chd4 mRNA 107932 Prediction 0.2381 Chd4 RAID02218263 mmu-miR-326-3p miRNA MIMAT0000559 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02304884 mmu-miR-330-5p miRNA MIMAT0004642 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02412022 mmu-miR-664-5p miRNA MIMAT0017353 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02415603 mmu-miR-7651-3p miRNA MIMAT0029805 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02434194 mmu-miR-491-5p miRNA MIMAT0003486 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02498080 mmu-miR-30e-5p miRNA MIMAT0000248 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02539905 mmu-let-7f-5p miRNA MIMAT0000525 Chd4 mRNA 107932 Prediction 0.2381 Chd4 RAID02569949 mmu-miR-3620-3p miRNA MIMAT0029879 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02579771 mmu-miR-7670-5p miRNA MIMAT0029846 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02589997 mmu-miR-103-3p miRNA MIMAT0000546 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02622777 mmu-miR-871-5p miRNA MIMAT0004841 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02669360 mmu-miR-6951-3p miRNA MIMAT0027803 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02675090 mmu-miR-3473b miRNA MIMAT0020367 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02680926 mmu-miR-7649-3p miRNA MIMAT0029801 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02812264 mmu-miR-5107-5p miRNA MIMAT0020615 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID02974826 mmu-miR-135a-5p miRNA MIMAT0000147 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03013948 mmu-let-7c-5p miRNA MIMAT0000523 Chd4 mRNA 107932 Prediction 0.2381 Chd4 RAID03081763 mmu-miR-15a-5p miRNA MIMAT0000526 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03085433 mmu-miR-6925-5p miRNA MIMAT0027750 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03121116 mmu-miR-7b-5p miRNA MIMAT0000678 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03129133 mmu-miR-302b-3p miRNA MIMAT0003374 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03267502 mmu-miR-495-3p miRNA MIMAT0003456 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03272378 mmu-miR-486a-3p miRNA MIMAT0017206 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03355159 mmu-miR-7116-3p miRNA MIMAT0028130 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03355812 mmu-miR-106a-5p miRNA MIMAT0000385 Chd4 mRNA 107932 CLIP-seq//Prediction 0.6308 Chd4 RAID03360412 mmu-miR-7646-5p miRNA MIMAT0029794 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03364940 mmu-miR-195a-5p miRNA MIMAT0000225 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03435602 mmu-miR-23a-5p miRNA MIMAT0017019 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03504051 mmu-miR-22-3p miRNA MIMAT0000531 Chd4 mRNA 107932 CLIP-seq//Prediction 0.6308 Chd4 RAID03512719 mmu-let-7k miRNA MIMAT0025580 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03521588 mmu-miR-3473e miRNA MIMAT0025587 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03540113 mmu-let-7a-5p miRNA MIMAT0000521 Chd4 mRNA 107932 Prediction 0.2381 Chd4 RAID03562395 mmu-miR-3065-5p miRNA MIMAT0014836 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03620578 mmu-miR-291a-3p miRNA MIMAT0000368 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03623434 mmu-miR-497a-5p miRNA MIMAT0003453 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03657502 mmu-miR-539-3p miRNA MIMAT0017208 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03668604 mmu-miR-8093 miRNA MIMAT0031394 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03672357 mmu-miR-6998-5p miRNA MIMAT0027898 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03710010 mmu-miR-214-3p miRNA MIMAT0000661 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03753640 mmu-miR-7659-5p miRNA MIMAT0029824 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03755525 mmu-miR-295-3p miRNA MIMAT0000373 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03777870 mmu-miR-145a-3p miRNA MIMAT0004534 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03797135 mmu-miR-493-3p miRNA MIMAT0004888 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03889644 mmu-miR-302a-3p miRNA MIMAT0000380 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03900085 mmu-miR-107-3p miRNA MIMAT0000647 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03918085 mmu-let-7i-5p miRNA MIMAT0000122 Chd4 mRNA 107932 Prediction 0.2381 Chd4 RAID03927224 mmu-miR-6999-5p miRNA MIMAT0027900 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03954260 mmu-miR-488-3p miRNA MIMAT0003450 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03980570 mmu-miR-30c-5p miRNA MIMAT0000514 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID03992292 mmu-miR-374b-5p miRNA MIMAT0003727 Chd4 mRNA 107932 Prediction 0.1828 Chd4 RAID04009217 mmu-let-7d-5p miRNA MIMAT0000383 Chd4 mRNA 107932 Prediction 0.2381 Chd4 RAID04036219 mmu-miR-292a-5p miRNA MIMAT0000369 Chd4 mRNA 107932 Prediction 0.1828