DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Pcgf1; Nspc1; Rnf68 ATTTA 33-776 819-823 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.!

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004526 mmu-miR-101a* 69837 Pcgf1 cguagucgugacacuAUUGACu |||||| auauuuaugugaaauUAACUGu 2 8 41 62 [mm9:6:83030792-83030813:+] 0.6782 120 6 -12.05 -0.1045 MIMAT0000143 mmu-miR-9* 69837 Pcgf1 ugaaagccAAU--AGAUCGAAAUa ||| | |:|||||| augugaaaUUAACUGUGGCUUUAu 2 15 47 70 [mm9:6:83030798-83030821:+] 0.6782 133 6 -8.46 -0.3991 MIMAT0000152 mmu-miR-140* 69837 Pcgf1 ggCACCAAGAUGGGACACCau ||| :|| |||||| auGUGAAAUUA-ACUGUGGcu 3 20 47 66 [mm9:6:83030798-83030817:+] 0.6782 125 0 -16.19 -0.3431 MIMAT0000154 mmu-miR-142-5p 69837 Pcgf1 ucaucacgaaagaUGAAAUAc :|||||| gaaauuaacugugGCUUUAUu 2 9 51 71 [mm9:6:83030802-83030822:+] 0.6782 124 6 -5.98 -0.2797 MIMAT0004574 mmu-miR-294* 69837 Pcgf1 ucuAUCCCGGAG-GUAAAACUca |: |||:|: : |||||| aacUGUGGCUUUAUUUUUUGAaa 3 20 57 79 [mm9:6:83030808-83030830:+] 0.6782 134 0 -10.69 -0.3819 MIMAT0004635 mmu-miR-92a* 69837 Pcgf1 cauuACGGU-GGUUAGGGGUGGa | ||| || |:|||||| uugcUUCCACCCCCUUCCCACCc 2 19 10 32 [mm9:6:83030761-83030783:+] 0.7105 141 6 -24.19 -0.1519 MIMAT0000569 mmu-miR-330* 69837 Pcgf1 agagacguccgggacACGAAAcg |||||| auuuuuugaaauaaaUGCUUUua 3 9 69 91 [mm9:6:83030820-83030842:+] 0.6782 120 0 -6.73 -0.6457 MIMAT0004653 mmu-miR-342-5p 69837 Pcgf1 gaguuagugucuaucGUGGGGa |||||| ggccaggcuugcuucCACCCCc 2 8 2 23 [mm9:6:83030753-83030774:+] 0.7105 120 6 -14.54 -0.1097 MIMAT0004789 mmu-miR-450a-3p 69837 Pcgf1 uacuuACGUUUCGUAGGGGUUa | | | | ||||||: ccccuUCCCACCCCUCCCCAGa 2 18 20 41 [mm9:6:83030771-83030792:+] 0.6782 129 0 -11.26 -0.1142 MIMAT0003731 mmu-miR-671-5p 69837 Pcgf1 gaggucggggagguccCGAAGGa |||||| -----gggccaggcuuGCUUCCa 2 8 1 18 [mm9:6:83030752-83030769:+] 0.7427 120 6 -18.14 -0.1612 MIMAT0003472 mmu-miR-693-5p 69837 Pcgf1 cuUUUGAAAGCCUACACCGAc |||:| | ||||||| ugAAAUUAAC---UGUGGCUu 2 20 50 67 [mm9:6:83030801-83030818:+] 0.6782 143 7 -10.31 -1.2097 MIMAT0004237 mmu-miR-742 69837 Pcgf1 aaaugggucguacCACCGAAAg |||||||| ugugaaauuaacuGUGGCUUUa 2 10 48 69 [mm9:6:83030799-83030820:+] 0.6782 145 7 -11.23 -1.2436 MIMAT0004238 mmu-miR-743a 69837 Pcgf1 agaUGAGUCGAACCACAGAAAg | |:| || ||| |||| ugaAAUUAACU--GUGGCUUUa 2 20 50 69 [mm9:6:83030801-83030820:+] 0.6782 120 0 -5.39 -0.1194 MIMAT0005291 mmu-miR-582-5p 69837 Pcgf1 ucAUUGACCAACUU--GUUGACAu || :| |||| :|||||| gaUAUUUAUGUGAAAUUAACUGUg 2 21 40 63 [mm9:6:83030791-83030814:+] 0.6782 135 6 -11.01 -0.1735 MIMAT0005830 mmu-miR-466l 69837 Pcgf1 uuauacacacGUACAUAAAUAu || ||||||| caccccucccCAGAUAUUUAUg 2 13 28 49 [mm9:6:83030779-83030800:+] 0.6782 144 7 -6.03 -0.9574 MIMAT0009402 mmu-miR-1938 69837 Pcgf1 cuggcuugauguucAGGGUGGc ||||||| ugcuuccacccccuUCCCACCc 2 9 11 32 [mm9:6:83030762-83030783:+] 0.7105 140 7 -13.52 -1.1204 MIMAT0009446 mmu-miR-1971 69837 Pcgf1 agagucggguCGGAAAUg ||:|||| ugaaauaaauGCUUUUAa 2 9 75 92 [mm9:6:83030826-83030843:+] 0.6782 124 0 -5.10 -0.2723 MIMAT0009458 mmu-miR-1981 69837 Pcgf1 cggugcAGAUUCGGGU-CGGAAAUg |: || : | ||:|||| uauuuuUUGAAAUAAAUGCUUUUAa 2 19 68 92 [mm9:6:83030819-83030843:+] 0.6782 125 0 -6.12 -0.2676 MIMAT0011286 mmu-miR-2182 69837 Pcgf1 gcgccgcacccUUUACACCGca || |||||| uaugugaaauuAACUGUGGCuu 3 12 46 67 [mm9:6:83030797-83030818:+] 0.6782 127 0 -11.03 -0.2509 MIMAT0000125 mmu-miR-23b 69837 Pcgf1 ccauuagggaccguUACACUa |||||| cuccccagauauuuAUGUGAa 2 8 33 53 [mm9:6:83030784-83030804:+] 0.6782 120 6 -10.88 -0.3629 MIMAT0000126 mmu-miR-27b 69837 Pcgf1 cguCUUGAAUCGGUGACACUu ||| ||| ||||||: uguGAAAUUA---ACUGUGGc 2 19 48 65 [mm9:6:83030799-83030816:+] 0.6782 134 0 -10.18 -0.2408 MIMAT0000140 mmu-miR-128 69837 Pcgf1 uuucucuggccaagUGACACu |||||| uuuaugugaaauuaACUGUGg 2 8 44 64 [mm9:6:83030795-83030815:+] 0.6782 120 6 -9.79 -0.2355 MIMAT0000215 mmu-miR-186 69837 Pcgf1 ucggguuuuccucuUAAGAAAc |||:||| uuaacuguggcuuuAUUUUUUg 2 9 55 76 [mm9:6:83030806-83030827:+] 0.6782 124 0 -7.32 -0.1120 MIMAT0000532 mmu-miR-23a 69837 Pcgf1 ccuuuagggaccguUACACUa |||||| cuccccagauauuuAUGUGAa 2 8 33 53 [mm9:6:83030784-83030804:+] 0.6782 120 6 -10.88 -0.3629 MIMAT0000537 mmu-miR-27a 69837 Pcgf1 cgcCUUGAAUCGGUGACACUu ||| ||| ||||||: uguGAAAUUA---ACUGUGGc 2 19 48 65 [mm9:6:83030799-83030816:+] 0.6782 134 0 -11.82 -0.2408 MIMAT0000559 mmu-miR-326 69837 Pcgf1 ugaccuccuucccGGGUCUcc |||||| cuucccaccccucCCCAGAua 3 9 23 43 [mm9:6:83030774-83030794:+] 0.6782 120 0 -9.07 -0.1490 MIMAT0004642 mmu-miR-330 69837 Pcgf1 cggauucUGUGUCCGGGUCUcu || | |||||| ccuucccACCCCUCCCCAGAua 3 16 22 43 [mm9:6:83030773-83030794:+] 0.6782 123 0 -13.62 -0.1447 MIMAT0004651 mmu-miR-340-5p 69837 Pcgf1 uuagucagaGUAACGAAAUAuu ::| ||||||| gaaauuaacUGUGGCUUUAUuu 3 14 51 72 [mm9:6:83030802-83030823:+] 0.6782 129 0 -7.94 -0.1082 MIMAT0000656 mmu-miR-139-5p 69837 Pcgf1 gaccucugugcacgUGACAUCu |||||:| uuuaugugaaauuaACUGUGGc 2 9 44 65 [mm9:6:83030795-83030816:+] 0.6782 124 0 -15.23 -0.1109 MIMAT0003486 mmu-miR-491 69837 Pcgf1 ggaguaccuucccaAGGGGUga |||||| ccccuucccaccccUCCCCAga 3 9 20 41 [mm9:6:83030771-83030792:+] 0.6782 120 0 -12.14 -0.1165

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G067421 Pcgf1 Mus musculus 69837

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Pcgf1 mmu-miR-1224 beg:12 end:36 pic:3' GAGGTGG---AGGGGTCAGGAGTG 5'& |||||| |.|||| |||| &5' -TCCACCCCCTTCCCACCCCTC-- 3' Pcgf1 mmu-miR-139-5p beg:46 end:65 pic:3' GACCTCTGTGCACG-----TGACATCT 5'& |.||| |||||.| &5' --------ATGTGAAATTAACTGTGG- 3' Pcgf1 mmu-miR-151-5p beg:51 end:69 pic:3' TGATCTGACACTCGAGGAGCT 5'& |.|| |||||| |||.. &5' ATTA-ACTGTG-GCTTT---- 3' Pcgf1 mmu-miR-1892 beg:20 end:43 pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& |.|||| ||| ||||||.|| &5' --CTTCCCACCCCTCCCCAGAT 3' Pcgf1 mmu-miR-1938 beg:22 end:32 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& ||||||| &5' --------------TCCCACC- 3' Pcgf1 mmu-miR-705 beg:8 end:32 pic:3' ACG--GGTGGGGTGGAGGGTGG 5'& ||| ||||||| |.||||||| &5' TGCTTCCACCCC-CTTCCCACC 3' Pcgf1 mmu-miR-742 beg:58 end:69 pic:3' AAATGGGTCGTACCACCGAAAG 5'& |||||||| &5' -------------GTGGCTTT- 3' Pcgf1 mmu-miR-92astar beg:13 end:32 pic:3' CATTACGGTGGTT-AGGGGTGGA 5'& ||||| |.|||||| &5' ------CCACCCCCTTCCCACC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pcgf1 RAID00313944 mmu-miR-6368 miRNA MIMAT0025112 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID00378529 mmu-miR-23b-3p miRNA MIMAT0000125 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID00468026 mmu-miR-8108 miRNA MIMAT0031413 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID00760840 mmu-miR-1938 miRNA MIMAT0009402 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID01109349 mmu-miR-6405 miRNA MIMAT0025157 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID01127293 mmu-miR-139-5p miRNA MIMAT0000656 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID01230304 mmu-miR-6931-5p miRNA MIMAT0027762 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID01296047 mmu-miR-6975-5p miRNA MIMAT0027852 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID01516640 mmu-miR-23a-3p miRNA MIMAT0000532 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID01562274 mmu-miR-186-5p miRNA MIMAT0000215 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID02170537 mmu-miR-466l-3p miRNA MIMAT0005830 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID02540926 mmu-miR-128-3p miRNA MIMAT0000140 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID03122388 mmu-miR-27a-3p miRNA MIMAT0000537 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID03228046 mmu-miR-326-3p miRNA MIMAT0000559 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID03235856 mmu-miR-27b-3p miRNA MIMAT0000126 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID03310645 mmu-miR-330-5p miRNA MIMAT0004642 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID03436333 mmu-miR-491-5p miRNA MIMAT0003486 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID03449205 mmu-miR-7052-5p miRNA MIMAT0028008 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID03554334 mmu-miR-340-5p miRNA MIMAT0004651 Pcgf1 mRNA 69837 Prediction 0.1828 Pcgf1 RAID04032606 mmu-miR-7005-5p miRNA MIMAT0027914 Pcgf1 mRNA 69837 Prediction 0.1828