Ccin
DNA & RNA Element - AREsite
Gene NameMotifCDS AreaARE AreaEvidence
CcinATTTA92-18581904-1908
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0004541mmu-miR-188-3p442829CcinacguUUGGGACGUACACCCUc |||::| :| |||||| --acAACUUUUUAAGUGGGAg218119[mm9:4:43998234-43998252:+]0.74991336-19.58-0.2656
MIMAT0000240mmu-miR-207442829CcincucccuccucUCGGUCCUCUUcg || ::|||||| caacuuuuuaAG-UGGGAGAAua314223[mm9:4:43998235-43998256:+]0.74991230-7.97-0.1804
MIMAT0004627mmu-miR-20a*442829CcingaAAUUCAC------GAGCA-UUACGUca ||||||| : || |||||| uuUUAAGUGGGAGAAUAAGUAAAUGCAuu321735[mm9:4:43998240-43998268:+]0.74991220-11.91-0.1974
MIMAT0004665mmu-miR-218-1*442829CcinccACGAACUGCCUUG-GUACAAa ||||||: | || |||||| aaUGCUUGGGGCUACACAUGUUc221104126[mm9:4:43998337-43998359:+]0.46521366-19.99-0.1654
MIMAT0004781mmu-miR-532-3p442829CcinacGUUCGGAACCCACACCCUCc ||| |:|| ||||||| -aCAA-CUUUUUAAGUGGGAGa221120[mm9:4:43998234-43998253:+]0.74991507-17.06-1.1862
MIMAT0003488mmu-miR-698442829CcinucccuuccuuugCUCUUAc |||||| cuuuuuaaguggGAGAAUa28523[mm9:4:43998238-43998256:+]0.74991206-7.18-0.2216
MIMAT0004868mmu-miR-343442829CcinagacccgUGUACUUCCCUCu | | ||||||| augacagAAAGCAAGGGAGg2145170[mm9:4:43998284-43998303:+]0.62911417-14.01-0.6687
MIMAT0005831mmu-miR-669k442829CcinaacguacgcaCAUAUACGUAu ||| |||||| gggagaauaaGUAAAUGCAUu2121535[mm9:4:43998248-43998268:+]0.74991236-8.83-0.2309
MIMAT0005838mmu-miR-669j442829CcinacaaacguacACUCAUAUACGu | |||| |||| agugggagaaUAAGUAAAUGCa2131233[mm9:4:43998245-43998266:+]0.74991200-12.00-0.1541
MIMAT0005842mmu-miR-669h-3p442829CcinacacguacacaCAUAUACGUAu ||| |||||| ugggagaauaaGUAAAUGCAUu2121435[mm9:4:43998247-43998268:+]0.74991236-8.83-0.2309
MIMAT0007877mmu-miR-1894-5p442829CcinucuccguccaccaucCCCUCUc |||||| -acaacuuuuuaaguGGGAGAa28121[mm9:4:43998234-43998254:+]0.74991206-11.38-0.2197
MIMAT0009393mmu-miR-1930442829CcinugcgacguccauGAUACCUCCa | ||||||| ggguuaauaucuCAAUGGAGGu211144165[mm9:4:43998377-43998398:+]0.45781427-15.26-0.9447
MIMAT0009421mmu-miR-669o442829CcinugUAUUU--GUA--CGUGUGUGUUGAu :|||| ||| :|: |||||:| aaGUAAAUGCAUUAUUAUUCACAAUUu2222349[mm9:4:43998256-43998282:+]0.70751350-12.06-0.1308
MIMAT0009421mmu-miR-669o442829CcinuguauuuguacgugugUGUUGAu |||||| ----------------ACAACUu2817[mm9:4:43998234-43998240:+]0.74991206-6.08-0.1989
MIMAT0000125mmu-miR-23b442829CcinccauuagggacCGUUACACUa | ||||||| aaagcaagggaGGAAUGUGAc2115878[mm9:4:43998291-43998311:+]0.59331427-11.03-0.4149
MIMAT0000148mmu-miR-136442829CcingguagUAGUUUU--GUUUACCUCa :|:|| | : ||||||| ucaggGUUAAUAUCUCAAUGGAGg218141164[mm9:4:43998374-43998397:+]0.45781447-13.41-0.3222
MIMAT0000160mmu-miR-150442829CcingugaccauguucccaACCCUCu |||||| --acaacuuuuuaagUGGGAGa28120[mm9:4:43998234-43998253:+]0.74991206-15.64-0.2823
MIMAT0000165mmu-miR-155442829CcinuggggauaguguuaauCGUAAUu |||||| gggagaauaaguaaauGCAUUAu281537[mm9:4:43998248-43998270:+]0.70751206-5.22-0.1934
MIMAT0000233mmu-miR-200b442829CcinagUAGUAAUGGUCCGUCAUAAu || | || | ||| |||| gaAUAAGUA-AAUGCAUUAUUa2211939[mm9:4:43998252-43998272:+]0.70751220-6.01-0.1082
MIMAT0000532mmu-miR-23a442829CcinccuuuagggacCGUUACACUa | ||||||| aaagcaagggaGGAAUGUGAc2115878[mm9:4:43998291-43998311:+]0.59331427-11.18-0.4149
MIMAT0000667mmu-miR-33442829CcinacguuacguugaugUUACGUg |||||| ugggagaauaaguaAAUGCAu281434[mm9:4:43998247-43998267:+]0.74991206-9.32-0.2683
MIMAT0000671mmu-miR-224442829CcinuugCCUUGGUGAUCACUGAAu ||:| | | ||||||| caaGGGAGGAAU-GUGACUUu2196281[mm9:4:43998295-43998314:+]0.59331487-14.50-0.7887
MIMAT0000747mmu-miR-382442829CcingcuuagguggugcuUGUUGAAg ||||||| --------------ACAACUUu2918[mm9:4:43998234-43998241:+]0.74991407-7.44-0.7067
MIMAT0003727mmu-miR-374442829CcingugaaucguccaacAUAAUAua |||||| auaaguaaaugcauUAUUAUuc392142[mm9:4:43998254-43998275:+]0.70751200-3.92-0.1602
MIMAT0003889mmu-miR-758442829CcinaucaccugguccAGUGUUu |||||| augcauuauuauUCACAAu282947[mm9:4:43998262-43998280:+]0.70751206-6.11-0.3713
MIMAT0004936mmu-miR-873442829CcinucCUCUGA-GUGUUCAAGGACg |:|:|| |||| ||||||| uuGGGGCUACACAUGUUCCUGa220109130[mm9:4:43998342-43998363:+]0.45781707-26.09-0.6679
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G072403CcinMus musculus442829
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
Ccinmmu-miR-1930beg:155end:166pic:3' TGCGACGTCCATGATACCTCCA 5'& |||||||| &5' --------------ATGGAGGT 3'
Ccinmmu-miR-125a-5pbeg:129end:147pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& || ||| .|||||| &5' -----GGAT--AGGA-TTCAGGG- 3'
Ccinmmu-miR-125b-5pbeg:129end:147pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& .| |||| .|||||| &5' -----GGATAGGA-TTCAGGG- 3'
Ccinmmu-miR-146bstarbeg:96end:116pic:3' TGGTCTTGACTCAG----GGATCCCG 5'& |.||| |.|.|||| &5' ---------GGGTCAATGCTTGGGGC 3'
Ccinmmu-miR-150beg:1end:21pic:3' GTGACCATGTTCCCAACCCTCT 5'& ||| .||| ||||||| &5' -ACTTTT-TAAG---TGGGAGA 3'
Ccinmmu-miR-186starbeg:99end:116pic:3' GGGTTTTTTAAGTG--GAATCCCG 5'& ||| |||.|||| &5' ----------TCAATGCTTGGGGC 3'
Ccinmmu-miR-1902beg:96end:119pic:3' TTCAG-TACGGATGACG-TGGAGA 5'& ..||| ||||.|. || || &5' GGGTCAATGCTTGGGGCTAC---- 3'
Ccinmmu-miR-202-5pbeg:127end:140pic:3' TTTCTTCATATACGTATCCTT 5'& ||| |||||| &5' ----------ATGGATAGGA- 3'
Ccinmmu-miR-204beg:54end:68pic:3' TCCGTATCCTACTGTTTCCCTT 5'& || .| |||||| &5' --------GAAAGC-AAGGGA- 3'
Ccinmmu-miR-224beg:62end:81pic:3' TTGCCTTGGTGATCACTGAAT 5'& ||.| | ||||||| &5' ---GGGAGGAAT-GTGACTT- 3'
Ccinmmu-miR-33beg:22end:45pic:3' ACG-TTACGTTGATGTTACGTG 5'& |. ||||| |.||. || ||| &5' -GTAAATGC-ATTATTATTCAC 3'
Ccinmmu-miR-343beg:51end:70pic:3' AGACCCGTGTA---C-TTCCCTCT 5'& ||| | |||||||. &5' -------ACAGAAAGCAAGGGAGG 3'
Ccinmmu-miR-351beg:129end:147pic:3' GTCCGAGTTTCCCGAGGAGTCCCT 5'& || ||| .|||||| &5' --GGAT---AGGA---TTCAGGG- 3'
Ccinmmu-miR-504beg:126end:149pic:3' CTATCTCACGTCT-GGTCCCAGA 5'& |||.|| .|| .||||||. &5' GATGGATA--GGATTCAGGGTT- 3'
Ccinmmu-miR-532-3pbeg:0end:20pic:3' ACGTTCGGAACCCACACCCTCC 5'& ||| |.|| ||||||| &5' --CAA-CTTTTTAAGTGGGAG- 3'
Ccinmmu-miR-532-3pbeg:84end:102pic:3' ACGTTCGGAACCCACACCCTCC 5'& |||| |||||.|| &5' ------CCTTTTA-GTGGGGGG 3'
Ccinmmu-miR-704beg:108end:126pic:3' GATCCTCGTCTCGTGTACAGA 5'& ||.|| |||||||. &5' ---GGGGCTA--CACATGTT- 3'
Ccinmmu-miR-873beg:110end:130pic:3' TCCTCTGA-GTGTTCAAGGACG 5'& |.|.|| |||| ||||||| &5' --GGGGCTACACATGTTCCTG- 3'
DNA & RNA Element - miRNAMap
Gene NameMature miRNATarget StartTarget EndmiRNA 3-5AlignmentTarget 5-3
Ccinmmu-miR-10a117149-GUGUUUAAG-----CCUAGAU---GUCCCAU |||| :||| |||| ||||||ACACAUGUUCCUGAUGGAUAGGAUUCAGGGUU
Ccinmmu-miR-125a133164GUGUCCAAUUUCCC------AGAGUC-CCU- |:||| | |||| ||||| |||GAUAGGAUUCAGGGUUAAUAUCUCAAUGGAG
Ccinmmu-miR-125b117148AGUGUUCA----------AUCCCAGAGUCCCU |||| || |||| :||||||ACACAUGUUCCUGAUGGAUAGGA-UUCAGGGU
Ccinmmu-miR-129-3p87118UACGAAAA--ACCCCAU---------UCCCGAA ||||| ||||| :|||||--CCUUUUAGUGGGGGGUCAAUGCUUGGGGCUA
Ccinmmu-miR-133a91119UGUCGA---CCA---ACUUCCCCUGGUU :||: ||| || |||:|:|UUAGUGGGGGGUCAAUGCUUGGGGCUAC
Ccinmmu-miR-133b91119-AUCGA---CCA---ACUUCCCCUGGUU |||: ||| || |||:|:|UUAGUGGGGGGUCAAUGCUUGGGGCUAC
Ccinmmu-miR-136139165-AGGUAGUAGUUUUGU--UUACCUCA |:|| :|:|| |: |||||||AUUCAGGGUUAAUAUCUCAAUGGAGG
Ccinmmu-miR-14992119CCUCACUUC-------UGUGCCUCGGUCU |||| | :| ||:||:|-UAGUGGGGGGUCAAUGCUUGGGGCUAC-
Ccinmmu-miR-181a3877-UGAGUG-------GCUGUCG------CAA--CUUACAA |:|||| :||||| | ||||||UAUUCACAAUUUAAUGACAGAAAGCAAGGGAGGAAUGUG
Ccinmmu-miR-181b4077GGGUG-------GCUG----UCGUUA----CUUACAA :||| :||| ||||| ||||||UUCACAAUUUAAUGACAGAAAGCAAGGGAGGAAUGUG
Ccinmmu-miR-1884270-UGGGAGGUG---GUA---CGUUCCCUAC || |::| || ||||||||CACAAUUUAAUGACAGAAAGCAAGGGAG-
Ccinmmu-miR-214105134GACGGACAG--------ACACGGACGACA |||:|| ||| |||| ||AUGCUUGGGGCUACACAUGUUCCUGAUGG
Ccinmmu-miR-29676105-UGU--CCUAAC-----UC-CCCCCCGGGA || ||||| || ||||||:|GACUUUGGAUUCCUUUUAGUGGGGGGUCA-
Ccinmmu-miR-32894119UGCCUUCCCGUCUC---UCCCGGUC :|| || || :||||:|GUGGGGGGUCAAUGCUUGGGGCUAC
Ccinmmu-miR-33096117AGAGACGUCCGGGACACGAAA--CG- | :||:| ||||| ||----GGGGGGUCAA-UGCUUGGGGCU
Ccinmmu-miR-33188117-AAGAUC-CUAUCCGGGU-----CCCCG- ||:||| | :||:| |||||CUUUUAGUGGGGGGUCAAUGCUUGGGGCU
Ccinmmu-miR-339122140ACUCGAGGACCUCCUGUCCCU |:||||| |||:|||--UGUUCCUGAUGGAUAGGA-
Ccinmmu-miR-34579110CGUGACCUGA----------UCCCCAGU--CGU :||||:| :||||||| ||--UUUGGAUUCCUUUUAGUGGGGGGUCAAUGCU
Ccinmmu-miR-35197148GUCCGAGUU-----UCCCG---------AGG-------------AGUCCCU :|| |||| :|||| ||| ||||||GGGGGUCAAUGCUUGGGGCUACACAUGUUCCUGAUGGAUAGGAUUCAGGGU
Ccinmmu-miR-425112133-CCGCCUGUGCUGUAAGGGCUA- ||| |||| |::||||:|||GGGCU-ACAC-AUGUUCCUGAUG
Ccinmmu-miR-4314670GGACGUACUGCCGGACGUUCUGU- :| ||||| | |||||: |AUUUAAUGACAGAAAGCAAGGGAG
Ccinmmu-miR-450b*104133-UACGUA---CGUUU--UACAAGGGUUA- |||| || |||||||::||AAUGCUUGGGGCUACACAUGUUCCUGAUG
Ccinmmu-miR-455-3p92121-UCACA---UA--UACGGGCACCUGACGUA |||| :| |||| | ||:|| ||UAGUGGGGGGUCAAUGCUUG-GGGCUACAC
Ccinmmu-miR-465-3p105133AGAUGAAUCUUUCCG----------GGACUAG |:|||:| ||| ||||||-AUGCUUGG---GGCUACACAUGUUCCUGAUG
Ccinmmu-miR-4835379-UGUUCUGCCCUCCCCUCCU--CACU- || ||| | ||||||| ||||GAC-AGAAAGCAAGGGAGGAAUGUGAC
Ccinmmu-miR-539140158UGUGUGGUUCCUAUUAAAGAGG :||:|| |||| ||||----UUCAGGGUUAAUAUCUCA
Ccinmmu-miR-5417292-ACACUGGUUGUAGUCUUAGGGAA- ||||||: |:||:||||AUGUGACUUU-----GGAUUCCUUU
Ccinmmu-miR-61592115UUCUCCCUCUGGGUCCGAGCCU- || |||:|::| |||:||:UAGUGGGGGGUCAAUGCUUGGGG
Ccinmmu-miR-665110131AUUCCCUGGA--GUCGGAGGACCA |||:|: || :|||||--UGGGGCUACACAUGUUCCUGA-
Ccinmmu-miR-670125148AAGUGGUGUAUGUG-----AGUCCCUA || ||: |: ||||||---UCCUGAUGGAUAGGAUUCAGGGU-
Ccinmmu-miR-68981102-CCUGGGGCGGCUCGCCCCUGC |||::|| : ||:||||:UGGAUUCCUUUUAGUGGGGGG-
Ccinmmu-miR-70496127GAUCCUCG--------UCUCG---UGUACAGA :||:|: :|:|| ||||||:-GGGGGGUCAAUGCUUGGGGCUACACAUGUUC
Ccinmmu-miR-136157164------------------AGGUAGUAGUUUU-GU-UUACCUCA |:|| :|:|| | |||||||UGUUCCUGAUGGAUAGGAUUCAGGGUUAAUAUCUCAAUGGAGG
Ccinmmu-miR-2247481AU----------------------UUGCCUUGGUGAUCACUGAAU || |||: |: |||||||AUUCACAAUUUAAUGACAGAAAGCAAGGGAGGAAU--GUGACUUU
Ccinmmu-miR-10a118148GUGUUUAAG-----CCUA---GAUGUCCCAu|||| :||| |||| | ||||||CACATGTTCCTGATGGATAGGATTCAGGGTt
Ccinmmu-miR-125a118147GUGUCCAA----UUUC---CCAGAGUCCCu|||| ||| | :| || :||||||CACATGTTCCTGATGGATAGGATTCAGGGt
Ccinmmu-miR-129-3p85117uACGAAAA--ACCCC---------AUUCCCGAa | ||||| ||||| | :|||||tTCCTTTTAGTGGGGGGTCAATGCTTGGGGCTa
Ccinmmu-miR-133a84105ugucGACCAACUUCCCCUGGUU || | | :||||::|||attcCTTTTAGTGGGGGGTCAA
Ccinmmu-miR-133b85105aucGACCAACUUCCCCUGGUU || | | :||||::|||ttcCTTTTAGTGGGGGGTCAA
Ccinmmu-miR-14998119CCUCACUUCUGUGCCUCGGUcu||:|| || :| :||:||:|GGGGTCAATGCTTGGGGCTAca
Ccinmmu-miR-181a5076UGAGUGGCUGUCG----CAACUUACAa| | || || ||| | ||||||AATGACAGAAAGCAAGGGAGGAATGTg
Ccinmmu-miR-181b5176gggUGGCUGUCGU----UACUUACAa || || |||| | ||||||atgACAGAAAGCAAGGGAGGAATGTg
Ccinmmu-miR-1884970ugggagGUGGUACGUUCCCUac || | ||||||||taatgaCAGAAAGCAAGGGAgg
Ccinmmu-miR-2245881aUUUG--CCUUGGUGAUCACUGAAu ||:| ||:| | | |||||||aAAGCAAGGGAGGAAT-GTGACTTt
Ccinmmu-miR-29684105uguccuAACUC-CCCCCCGGga || || ||||||:|attcctTTTAGTGGGGGGTCaa
Ccinmmu-miR-33091113agagACGUCCGGGACACGAAACg || :|| :| ||||| |ttagTGGGGGGTCAATGCTTGGg
Ccinmmu-miR-33189115AAGAUC-CUAUCC-G----GGUCCCCG||:||| |: :|| | |: |||||TTTTAGTGGGGGGTCAATGCTTGGGGC
Ccinmmu-miR-339120147acuCGAGG---ACC--UCCU--GUCCCu |:||| ||| |||| |||||catGTTCCTGATGGATAGGATTCAGGGt
Ccinmmu-miR-34591109cgUGACCUGAUCCCCAGU--CGu | ||| ||||||| ||ttAGTGG----GGGGTCAATGCt
Ccinmmu-miR-351120147GUCCGA-GUUUCCCGA---GGAGUCCCu|| |:| | :| || | :||||||CATGTTCCTGATGGATAGGATTCAGGGt
Ccinmmu-miR-425113131CCGCCUGUGCUGUAAGGGCUA||| |||| |::||||:|||GGC-TACAC-ATGTTCCTGAT
Ccinmmu-miR-450b*105131UACGUAC----GU-UUUACAAGGGUUA|||| || :| | |||||||::||ATGCTTGGGGCTACACATGTTCCTGAT
Ccinmmu-miR-455-3p98120uCACAUAUACGGGCACCUGACGUa | || ||||::| ||:|| ||gGGGTCAATGCTTG-GGGCTACAc
Ccinmmu-miR-465-3p104132agAUGAAUCU-------UUCCGGGACUAg |:|||:|: | | :||||||aaTGCTTGGGGCTACACATGTTCCTGATg
Ccinmmu-miR-4835475UGUUCUGCCCUCCCCUCCUCACu|| ||| | | ||||||| ||AC-AGAAAGCAAGGGAGGAATGt
Ccinmmu-miR-539136157ugugugGUUCCUAUUAAAGAGg ||:|| |||| ||||aggattCAGGGTTAATATCTCa
Ccinmmu-miR-5417390ACACUGGUUGUAGUCUUAGGGAA|||||| |: |:||:||||TGTGAC-----TTTGGATTCCTT
Ccinmmu-miR-665108131auuCCCUG--GAGUCGGAGGACca |||:| | || :|||||cttGGGGCTACACATGTTCCTGat
Ccinmmu-miR-670124148AAGUGGUG--UAU-GUGAGUCCCua||| : |: ||| |:||||||TTCCTGATGGATAGGATTCAGGGtt
Ccinmmu-miR-68982102CCUGGGGCGGCUCGCCCCugc|||::|| :: ||:||||GGATTCCTTTTAGTGGGGggt
Ccinmmu-miR-704108126GAUCCUCGUCUCGUGUACAga|| ||:|| | |||||||CTTGGGGC-TA-CACATGTtc
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
CcinRAID00001611mmu-miR-155-5pmiRNAMIMAT0000165CcinmRNA442829Prediction0.1828
CcinRAID00075222mmu-miR-23a-3pmiRNAMIMAT0000532CcinmRNA442829Prediction0.1828
CcinRAID00628550mmu-miR-873a-5pmiRNAMIMAT0004936CcinmRNA442829Prediction0.2202
CcinRAID01276797mmu-miR-758-3pmiRNAMIMAT0003889CcinmRNA442829Prediction0.1828
CcinRAID01341090mmu-miR-33-5pmiRNAMIMAT0000667CcinmRNA442829Prediction0.1828
CcinRAID01343737mmu-miR-136-5pmiRNAMIMAT0000148CcinmRNA442829Prediction0.1828
CcinRAID01538023mmu-miR-382-5pmiRNAMIMAT0000747CcinmRNA442829Prediction0.1828
CcinRAID02640511mmu-miR-224-5pmiRNAMIMAT0000671CcinmRNA442829Prediction0.1828
CcinRAID03016930mmu-miR-23b-3pmiRNAMIMAT0000125CcinmRNA442829Prediction0.1828
CcinRAID03214307mmu-miR-7220-3pmiRNAMIMAT0028409CcinmRNA442829Prediction0.1828
CcinRAID03387615mmu-miR-150-5pmiRNAMIMAT0000160CcinmRNA442829Prediction0.1828
CcinRAID03402705mmu-miR-421-5pmiRNAMIMAT0017273CcinmRNA442829Prediction0.1828
CcinRAID03542227mmu-miR-6370miRNAMIMAT0025114CcinmRNA442829Prediction0.1828
CcinRAID03594257mmu-miR-374b-5pmiRNAMIMAT0003727CcinmRNA442829Prediction0.1828
CcinRAID03768965mmu-miR-200b-3pmiRNAMIMAT0000233CcinmRNA442829Prediction0.1828
CcinRAID03799047mmu-miR-215-3pmiRNAMIMAT0017169CcinmRNA442829Prediction0.1828