DNA & RNA Element - miRNAMap |
Gene Name | Mature miRNA | Target Start | Target End | miRNA 3-5 | Alignment | Target 5-3 |
Ccin | mmu-miR-10a | 117 | 149 | -GUGUUUAAG-----CCUAGAU---GUCCCAU | |||| :||| |||| |||||| | ACACAUGUUCCUGAUGGAUAGGAUUCAGGGUU |
Ccin | mmu-miR-125a | 133 | 164 | GUGUCCAAUUUCCC------AGAGUC-CCU- | |:||| | |||| ||||| ||| | GAUAGGAUUCAGGGUUAAUAUCUCAAUGGAG |
Ccin | mmu-miR-125b | 117 | 148 | AGUGUUCA----------AUCCCAGAGUCCCU | |||| || |||| :|||||| | ACACAUGUUCCUGAUGGAUAGGA-UUCAGGGU |
Ccin | mmu-miR-129-3p | 87 | 118 | UACGAAAA--ACCCCAU---------UCCCGAA | ||||| ||||| :||||| | --CCUUUUAGUGGGGGGUCAAUGCUUGGGGCUA |
Ccin | mmu-miR-133a | 91 | 119 | UGUCGA---CCA---ACUUCCCCUGGUU | :||: ||| || |||:|:| | UUAGUGGGGGGUCAAUGCUUGGGGCUAC |
Ccin | mmu-miR-133b | 91 | 119 | -AUCGA---CCA---ACUUCCCCUGGUU | |||: ||| || |||:|:| | UUAGUGGGGGGUCAAUGCUUGGGGCUAC |
Ccin | mmu-miR-136 | 139 | 165 | -AGGUAGUAGUUUUGU--UUACCUCA | |:|| :|:|| |: ||||||| | AUUCAGGGUUAAUAUCUCAAUGGAGG |
Ccin | mmu-miR-149 | 92 | 119 | CCUCACUUC-------UGUGCCUCGGUCU | |||| | :| ||:||:| | -UAGUGGGGGGUCAAUGCUUGGGGCUAC- |
Ccin | mmu-miR-181a | 38 | 77 | -UGAGUG-------GCUGUCG------CAA--CUUACAA | |:|||| :||||| | |||||| | UAUUCACAAUUUAAUGACAGAAAGCAAGGGAGGAAUGUG |
Ccin | mmu-miR-181b | 40 | 77 | GGGUG-------GCUG----UCGUUA----CUUACAA | :||| :||| ||||| |||||| | UUCACAAUUUAAUGACAGAAAGCAAGGGAGGAAUGUG |
Ccin | mmu-miR-188 | 42 | 70 | -UGGGAGGUG---GUA---CGUUCCCUAC | || |::| || |||||||| | CACAAUUUAAUGACAGAAAGCAAGGGAG- |
Ccin | mmu-miR-214 | 105 | 134 | GACGGACAG--------ACACGGACGACA | |||:|| ||| |||| || | AUGCUUGGGGCUACACAUGUUCCUGAUGG |
Ccin | mmu-miR-296 | 76 | 105 | -UGU--CCUAAC-----UC-CCCCCCGGGA | || ||||| || ||||||:| | GACUUUGGAUUCCUUUUAGUGGGGGGUCA- |
Ccin | mmu-miR-328 | 94 | 119 | UGCCUUCCCGUCUC---UCCCGGUC | :|| || || :||||:| | GUGGGGGGUCAAUGCUUGGGGCUAC |
Ccin | mmu-miR-330 | 96 | 117 | AGAGACGUCCGGGACACGAAA--CG- | | :||:| ||||| || | ----GGGGGGUCAA-UGCUUGGGGCU |
Ccin | mmu-miR-331 | 88 | 117 | -AAGAUC-CUAUCCGGGU-----CCCCG- | ||:||| | :||:| ||||| | CUUUUAGUGGGGGGUCAAUGCUUGGGGCU |
Ccin | mmu-miR-339 | 122 | 140 | ACUCGAGGACCUCCUGUCCCU | |:||||| |||:||| | --UGUUCCUGAUGGAUAGGA- |
Ccin | mmu-miR-345 | 79 | 110 | CGUGACCUGA----------UCCCCAGU--CGU | :||||:| :||||||| || | --UUUGGAUUCCUUUUAGUGGGGGGUCAAUGCU |
Ccin | mmu-miR-351 | 97 | 148 | GUCCGAGUU-----UCCCG---------AGG-------------AGUCCCU | :|| |||| :|||| ||| |||||| | GGGGGUCAAUGCUUGGGGCUACACAUGUUCCUGAUGGAUAGGAUUCAGGGU |
Ccin | mmu-miR-425 | 112 | 133 | -CCGCCUGUGCUGUAAGGGCUA- | ||| |||| |::||||:||| | GGGCU-ACAC-AUGUUCCUGAUG |
Ccin | mmu-miR-431 | 46 | 70 | GGACGUACUGCCGGACGUUCUGU- | :| ||||| | |||||: | | AUUUAAUGACAGAAAGCAAGGGAG |
Ccin | mmu-miR-450b* | 104 | 133 | -UACGUA---CGUUU--UACAAGGGUUA- | |||| || |||||||::|| | AAUGCUUGGGGCUACACAUGUUCCUGAUG |
Ccin | mmu-miR-455-3p | 92 | 121 | -UCACA---UA--UACGGGCACCUGACGUA | |||| :| |||| | ||:|| || | UAGUGGGGGGUCAAUGCUUG-GGGCUACAC |
Ccin | mmu-miR-465-3p | 105 | 133 | AGAUGAAUCUUUCCG----------GGACUAG | |:|||:| ||| |||||| | -AUGCUUGG---GGCUACACAUGUUCCUGAUG |
Ccin | mmu-miR-483 | 53 | 79 | -UGUUCUGCCCUCCCCUCCU--CACU- | || ||| | ||||||| |||| | GAC-AGAAAGCAAGGGAGGAAUGUGAC |
Ccin | mmu-miR-539 | 140 | 158 | UGUGUGGUUCCUAUUAAAGAGG | :||:|| |||| |||| | ----UUCAGGGUUAAUAUCUCA |
Ccin | mmu-miR-541 | 72 | 92 | -ACACUGGUUGUAGUCUUAGGGAA- | ||||||: |:||:|||| | AUGUGACUUU-----GGAUUCCUUU |
Ccin | mmu-miR-615 | 92 | 115 | UUCUCCCUCUGGGUCCGAGCCU- | || |||:|::| |||:||: | UAGUGGGGGGUCAAUGCUUGGGG |
Ccin | mmu-miR-665 | 110 | 131 | AUUCCCUGGA--GUCGGAGGACCA | |||:|: || :||||| | --UGGGGCUACACAUGUUCCUGA- |
Ccin | mmu-miR-670 | 125 | 148 | AAGUGGUGUAUGUG-----AGUCCCUA | || ||: |: |||||| | ---UCCUGAUGGAUAGGAUUCAGGGU- |
Ccin | mmu-miR-689 | 81 | 102 | -CCUGGGGCGGCUCGCCCCUGC | |||::|| : ||:||||: | UGGAUUCCUUUUAGUGGGGGG- |
Ccin | mmu-miR-704 | 96 | 127 | GAUCCUCG--------UCUCG---UGUACAGA | :||:|: :|:|| ||||||: | -GGGGGGUCAAUGCUUGGGGCUACACAUGUUC |
Ccin | mmu-miR-136 | 157 | 164 | ------------------AGGUAGUAGUUUU-GU-UUACCUCA | |:|| :|:|| | ||||||| | UGUUCCUGAUGGAUAGGAUUCAGGGUUAAUAUCUCAAUGGAGG |
Ccin | mmu-miR-224 | 74 | 81 | AU----------------------UUGCCUUGGUGAUCACUGAAU | || |||: |: ||||||| | AUUCACAAUUUAAUGACAGAAAGCAAGGGAGGAAU--GUGACUUU |
Ccin | mmu-miR-10a | 118 | 148 | GUGUUUAAG-----CCUA---GAUGUCCCAu | |||| :||| |||| | |||||| | CACATGTTCCTGATGGATAGGATTCAGGGTt |
Ccin | mmu-miR-125a | 118 | 147 | GUGUCCAA----UUUC---CCAGAGUCCCu | |||| ||| | :| || :|||||| | CACATGTTCCTGATGGATAGGATTCAGGGt |
Ccin | mmu-miR-129-3p | 85 | 117 | uACGAAAA--ACCCC---------AUUCCCGAa | | ||||| ||||| | :||||| | tTCCTTTTAGTGGGGGGTCAATGCTTGGGGCTa |
Ccin | mmu-miR-133a | 84 | 105 | ugucGACCAACUUCCCCUGGUU | || | | :||||::||| | attcCTTTTAGTGGGGGGTCAA |
Ccin | mmu-miR-133b | 85 | 105 | aucGACCAACUUCCCCUGGUU | || | | :||||::||| | ttcCTTTTAGTGGGGGGTCAA |
Ccin | mmu-miR-149 | 98 | 119 | CCUCACUUCUGUGCCUCGGUcu | ||:|| || :| :||:||:| | GGGGTCAATGCTTGGGGCTAca |
Ccin | mmu-miR-181a | 50 | 76 | UGAGUGGCUGUCG----CAACUUACAa | | | || || ||| | |||||| | AATGACAGAAAGCAAGGGAGGAATGTg |
Ccin | mmu-miR-181b | 51 | 76 | gggUGGCUGUCGU----UACUUACAa | || || |||| | |||||| | atgACAGAAAGCAAGGGAGGAATGTg |
Ccin | mmu-miR-188 | 49 | 70 | ugggagGUGGUACGUUCCCUac | || | |||||||| | taatgaCAGAAAGCAAGGGAgg |
Ccin | mmu-miR-224 | 58 | 81 | aUUUG--CCUUGGUGAUCACUGAAu | ||:| ||:| | | ||||||| | aAAGCAAGGGAGGAAT-GTGACTTt |
Ccin | mmu-miR-296 | 84 | 105 | uguccuAACUC-CCCCCCGGga | || || ||||||:| | attcctTTTAGTGGGGGGTCaa |
Ccin | mmu-miR-330 | 91 | 113 | agagACGUCCGGGACACGAAACg | || :|| :| ||||| | | ttagTGGGGGGTCAATGCTTGGg |
Ccin | mmu-miR-331 | 89 | 115 | AAGAUC-CUAUCC-G----GGUCCCCG | ||:||| |: :|| | |: ||||| | TTTTAGTGGGGGGTCAATGCTTGGGGC |
Ccin | mmu-miR-339 | 120 | 147 | acuCGAGG---ACC--UCCU--GUCCCu | |:||| ||| |||| ||||| | catGTTCCTGATGGATAGGATTCAGGGt |
Ccin | mmu-miR-345 | 91 | 109 | cgUGACCUGAUCCCCAGU--CGu | | ||| ||||||| || | ttAGTGG----GGGGTCAATGCt |
Ccin | mmu-miR-351 | 120 | 147 | GUCCGA-GUUUCCCGA---GGAGUCCCu | || |:| | :| || | :|||||| | CATGTTCCTGATGGATAGGATTCAGGGt |
Ccin | mmu-miR-425 | 113 | 131 | CCGCCUGUGCUGUAAGGGCUA | ||| |||| |::||||:||| | GGC-TACAC-ATGTTCCTGAT |
Ccin | mmu-miR-450b* | 105 | 131 | UACGUAC----GU-UUUACAAGGGUUA | |||| || :| | |||||||::|| | ATGCTTGGGGCTACACATGTTCCTGAT |
Ccin | mmu-miR-455-3p | 98 | 120 | uCACAUAUACGGGCACCUGACGUa | | || ||||::| ||:|| || | gGGGTCAATGCTTG-GGGCTACAc |
Ccin | mmu-miR-465-3p | 104 | 132 | agAUGAAUCU-------UUCCGGGACUAg | |:|||:|: | | :|||||| | aaTGCTTGGGGCTACACATGTTCCTGATg |
Ccin | mmu-miR-483 | 54 | 75 | UGUUCUGCCCUCCCCUCCUCACu | || ||| | | ||||||| || | AC-AGAAAGCAAGGGAGGAATGt |
Ccin | mmu-miR-539 | 136 | 157 | ugugugGUUCCUAUUAAAGAGg | ||:|| |||| |||| | aggattCAGGGTTAATATCTCa |
Ccin | mmu-miR-541 | 73 | 90 | ACACUGGUUGUAGUCUUAGGGAA | |||||| |: |:||:|||| | TGTGAC-----TTTGGATTCCTT |
Ccin | mmu-miR-665 | 108 | 131 | auuCCCUG--GAGUCGGAGGACca | |||:| | || :||||| | cttGGGGCTACACATGTTCCTGat |
Ccin | mmu-miR-670 | 124 | 148 | AAGUGGUG--UAU-GUGAGUCCCua | ||| : |: ||| |:|||||| | TTCCTGATGGATAGGATTCAGGGtt |
Ccin | mmu-miR-689 | 82 | 102 | CCUGGGGCGGCUCGCCCCugc | |||::|| :: ||:|||| | GGATTCCTTTTAGTGGGGggt |
Ccin | mmu-miR-704 | 108 | 126 | GAUCCUCGUCUCGUGUACAga | || ||:|| | ||||||| | CTTGGGGC-TA-CACATGTtc |