DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004526 mmu-miR-101a* 333307 Trim75 cguAGUCGUGACACUAUUGACu |:: | | | ||||||| uuuUUGCCUAUUUUAUAACUGa 2 20 524 545 [mm9:8:67505747-67505768:-] 0.5000 147 7 -9.82 -0.8584 MIMAT0004529 mmu-miR-125b* 333307 Trim75 uccaggguUCUUGGACU-GAACa |||: |||| |||| uacacaguAGAGGCUGACCUUGa 2 15 583 605 [mm9:8:67505687-67505709:-] 0.5000 122 0 -16.22 -0.9854 MIMAT0004539 mmu-miR-183* 333307 Trim75 aauACCGGGAAGCCAUUAAGUg || ||:| ||||||| ggcUGACCUUGAAUUAAUUCAu 2 20 594 615 [mm9:8:67505677-67505698:-] 0.5000 151 7 -12.16 -0.7242 MIMAT0004574 mmu-miR-294* 333307 Trim75 ucuaucccGGAGGUA-AAACUCa ::|:||| |||||| guucaaccUUUUCAUCUUUGAGa 2 15 363 385 [mm9:8:67505907-67505929:-] 0.5000 122 6 -12.82 -0.8790 MIMAT0004575 mmu-miR-295* 333307 Trim75 cuucACACGGGGUGUAAACUCa || | :::::||||||| ccuuUGAGAUUUGUAUUUGAGg 2 19 648 669 [mm9:8:67505623-67505644:-] 0.5090 154 7 -11.47 -0.4933 MIMAT0000376 mmu-miR-298 333307 Trim75 cccuUCUUGUCGGGAGGAGACgg :|| : |: :||||||| cuuuGGAUUUGUAUUCCUCUGga 3 20 90 112 [mm9:8:67506180-67506202:-] 0.5000 135 0 -16.15 -0.2215 MIMAT0000378 mmu-miR-300 333307 Trim75 cuuCUCUCGAAC--GGGAACG-UAu ||| || || |:||||| || cguGAGCGCCUGUACUCUUGCUAUg 2 20 142 166 [mm9:8:67506126-67506150:-] 0.5000 126 0 -15.89 -0.2382 MIMAT0004616 mmu-miR-30c-1* 333307 Trim75 ccucauuuGUUGGGAGAGGGUc | :|: ||||||| cagccuguCUGCUGUCUCCCAu 2 15 220 241 [mm9:8:67506051-67506072:-] 0.5000 146 7 -16.26 -0.2200 MIMAT0005438 mmu-miR-30c-2* 333307 Trim75 ucucauuuGUCGGAAGAGGGUc | ||: ||||||| cagccuguCUGCUGUCUCCCAu 2 15 220 241 [mm9:8:67506051-67506072:-] 0.5000 150 7 -18.56 -0.2180 MIMAT0004617 mmu-miR-148a* 333307 Trim75 ucagccUCACAGAG-UCUU-GAAa ||| |||| |||| ||| uacauuAGUUUCUCUAGAAUCUUa 2 17 671 694 [mm9:8:67505598-67505621:-] 0.5117 127 0 -11.53 -0.9077 MIMAT0000549 mmu-miR-322* 333307 Trim75 cacaacgucgcgAAGUACAAa |||||||| uuaagagguuuaUUCAUGUUc 2 10 21 41 [mm9:8:67506251-67506271:-] 0.4492 145 7 -9.87 -0.3276 MIMAT0004664 mmu-miR-214* 333307 Trim75 cgUGUCGUUCACAUCUGUCCGu |: | || | ||||||| uuAUUGAUAG-GAUGACAGGCg 2 21 123 143 [mm9:8:67506149-67506169:-] 0.5000 142 7 -16.85 -0.3515 MIMAT0003173 mmu-miR-547 333307 Trim75 gagugAGUUU-CUACAUGGUUc |||:: : ||||||| gcugaUCAGGUUGGGUACCAAc 2 17 195 216 [mm9:8:67506076-67506097:-] 0.5000 143 7 -14.39 -0.1332 MIMAT0003892 mmu-miR-762 333307 Trim75 cgagacaGGGCCGGGGUCGGGg ||:|| :||||||| aacccagCCUGG-UCCAGCCCu 2 16 428 448 [mm9:8:67505844-67505864:-] 0.5000 153 7 -28.08 -0.3042 MIMAT0003892 mmu-miR-762 333307 Trim75 cgagacAGGGCCGGGGUCGGGg |: | | ||||||| acagguUUACAUCACCAGCCCa 2 17 466 487 [mm9:8:67505805-67505826:-] 0.5000 144 7 -20.22 -1.0402 MIMAT0014816 mmu-miR-3099 333307 Trim75 aggGGUUGGAGAGAGAUCGGAu :|||| | ||||||| aagUCAAC--CGGGCUAGCCUu 2 20 396 415 [mm9:8:67505877-67505896:-] 0.5000 144 7 -21.67 -0.1227 MIMAT0014816 mmu-miR-3099 333307 Trim75 agggguuggagagaGAUCGGAu ||||||| cuauguagucuaggCUAGCCUc 2 9 553 574 [mm9:8:67505718-67505739:-] 0.5000 140 7 -17.54 -0.2636 MIMAT0003737 mmu-miR-666-5p 333307 Trim75 ccgAGAGUGUCGACACGGG-CGa ||||||| ||||| || ccaUCUCACA--AAUGCCCAGCc 2 20 629 649 [mm9:8:67505643-67505663:-] 0.5045 120 0 -20.86 -1.0142 MIMAT0003461 mmu-miR-683 333307 Trim75 cuCCUGUGUCGAA----UGUCGUCc ||| ::| || ||||||| aaGGAAUUGGAUUAAAAACAGCAGa 2 20 715 739 [mm9:8:67505553-67505577:-] 0.5143 142 7 -14.46 -1.1680 MIMAT0003466 mmu-miR-687 333307 Trim75 agUAACGACGUAAGGUCCUAUc ||| ||:|||: |||||| agAUU--UGUAUUUGAGGAUAc 2 21 654 673 [mm9:8:67505619-67505638:-] 0.5090 137 6 -15.55 -0.1215 MIMAT0003469 mmu-miR-690 333307 Trim75 aaaccaacacUCGGAUCGGAAa :| |||||||| uaagucaaccGGGCUAGCCUUg 2 13 395 416 [mm9:8:67505876-67505897:-] 0.5000 148 7 -14.27 -0.1299 MIMAT0003469 mmu-miR-690 333307 Trim75 aaaccaacacUCGGAUC-GGAAa :|||||| |||| aacccugacuGGCCUAGACCUUu 2 13 168 190 [mm9:8:67506102-67506124:-] 0.5000 120 0 -16.34 -0.4832 MIMAT0003476 mmu-miR-669b 333307 Trim75 uguacGUGU-ACGUGUGUUU-UGa |||| ||: ||||| || aucaaCACACUGUCAACAAACACa 2 18 275 298 [mm9:8:67505994-67506017:-] 0.5000 120 0 -10.17 -1.2094 MIMAT0003496 mmu-miR-706 333307 Trim75 aaaAAACUC---UGU-CCCAAAGAGa |||||| ||| ||||||| guaUUUGAGGAUACAUUAGUUUCUCu 2 20 660 685 [mm9:8:67505607-67505632:-] 0.5117 153 7 -17.14 -0.9761 MIMAT0004841 mmu-miR-871 333307 Trim75 guacugacCGUGAU-UAGACUUAu |: :|| |||||||| acuucuaaGUCUUACAUCUGAAUc 2 16 306 329 [mm9:8:67505963-67505986:-] 0.5000 150 7 -9.03 -0.6141 MIMAT0004846 mmu-miR-881 333307 Trim75 agauaAGUCU--UUUCUGUGUCAa ||| | :| ||||||| uagccUCAAACUUGAUACACAGUa 2 18 568 591 [mm9:8:67505701-67505724:-] 0.5000 144 7 -8.75 -0.9523 MIMAT0004848 mmu-miR-883a-5p 333307 Trim75 cauuGACGAUGAAG---AGAGUCGu |||||:: || ||||||| cuguCUGCUGUCUCCCAUCUCAGCu 2 19 224 248 [mm9:8:67506044-67506068:-] 0.5000 157 7 -21.40 -0.2251 MIMAT0004881 mmu-miR-466f-5p 333307 Trim75 guaCGUGUACGUGUGUGUG-CAu ||||| : |||||| || caaGCACAGAUCAACACACUGUc 2 20 266 288 [mm9:8:67506004-67506026:-] 0.5000 123 0 -18.08 -0.7393 MIMAT0004935 mmu-miR-872* 333307 Trim75 uccUCCGAUGACGUUAUCAAGu | ||||| ||||||| ucuAAGCUAC----AUAGUUCa 2 20 350 367 [mm9:8:67505925-67505942:-] 0.5000 146 7 -14.65 -0.6676 MIMAT0004938 mmu-miR-875-3p 333307 Trim75 guaucggAGUCAUAAAAGUCc | :||:||||||| aaagugaUAGGUGUUUUCAGa 2 15 500 520 [mm9:8:67505772-67505792:-] 0.5000 154 7 -14.02 -0.6801 MIMAT0004861 mmu-miR-877 333307 Trim75 gggacgcgGUAGAGGAGAUg :|| ||||||: uggauuugUAU-UCCUCUGg 2 13 93 111 [mm9:8:67506181-67506199:-] 0.5000 126 0 -12.62 -0.1033 MIMAT0005291 mmu-miR-582-5p 333307 Trim75 ucaUUGACCAAC---UUGUUGACAu | | ||||| | ||||||| cugAUCAGGUUGGGUACCAACUGUc 2 20 196 220 [mm9:8:67506072-67506096:-] 0.5000 154 7 -17.62 -0.1641 MIMAT0005838 mmu-miR-669j 333307 Trim75 acaaacguacacucAUAUACGu ||||||| cuggccuagaccuuUAUAUGCu 2 9 176 197 [mm9:8:67506095-67506116:-] 0.5000 140 7 -6.35 -0.3785 MIMAT0005840 mmu-miR-669i 333307 Trim75 cauacguacacACAUAUACGu | ||||||| uggccuagaccUUUAUAUGCu 2 11 177 197 [mm9:8:67506095-67506115:-] 0.5000 142 7 -6.35 -0.3785 MIMAT0005859 mmu-miR-1198 333307 Trim75 gguucGGUCGGUCCUUGUGUAu |:: | | ||||||| acacaCUGUCAACAAACACAUu 2 18 279 300 [mm9:8:67505992-67506013:-] 0.5000 145 7 -13.04 -0.9998 MIMAT0007863 mmu-miR-1902 333307 Trim75 uucAGUACGGAUGACGUG-GAGa ||||| | |||||| ||| uauUCAUG--UUCUGCACUCUCc 2 20 31 51 [mm9:8:67506241-67506261:-] 0.4492 128 0 -20.02 -0.2622 MIMAT0007874 mmu-miR-1904 333307 Trim75 ggagggAGGUCUCCUCGUCUUg |: | | ||||||: auuggaUUAAAAACAGCAGAGu 2 17 720 741 [mm9:8:67505551-67505572:-] 0.5143 128 0 -13.70 -0.1386 MIMAT0009407 mmu-miR-1942 333307 Trim75 guuggucuacuucUGUAGACu ||||||| acuucuaagucuuACAUCUGa 2 9 306 326 [mm9:8:67505966-67505986:-] 0.5000 140 7 -11.41 -1.1412 MIMAT0009409 mmu-miR-1944 333307 Trim75 uuAGUCUUGAACUGUAAGUCGUGUCUc || |:::|| ||| |||||||| uaUCUGGGUUU-ACA---AGCACAGAu 2 26 254 276 [mm9:8:67506016-67506038:-] 0.5000 159 7 -20.20 -0.5012 MIMAT0009435 mmu-miR-1962 333307 Trim75 uacacaGGGUCACGGUC-GGAGa ||::|| |||| |||| acccagCCUGGU-CCAGCCCUCc 2 17 429 450 [mm9:8:67505842-67505863:-] 0.5000 122 0 -23.41 -0.3650 MIMAT0009442 mmu-miR-1969 333307 Trim75 uggGUACA-AUUUCAGA-GGUAGAa | ||| |: |||| |||||| cagCCUGUCUGCUGUCUCCCAUCUc 2 21 220 244 [mm9:8:67506048-67506072:-] 0.5000 127 6 -19.48 -0.3033 MIMAT0009446 mmu-miR-1971 333307 Trim75 agaGUCGGGUC-GGAAAUg ::|||:|| |||||| gacUGGCCUAGACCUUUAu 2 16 174 192 [mm9:8:67506100-67506118:-] 0.5000 127 6 -20.30 -0.2585 MIMAT0009458 mmu-miR-1981 333307 Trim75 cgGUGCAGAUUCGGGUC-GGAAAUg | :| || :|||:|| |||||| acCCUGACU-GGCCUAGACCUUUAu 2 23 169 192 [mm9:8:67506100-67506123:-] 0.5000 132 6 -24.87 -0.2585 MIMAT0009459 mmu-miR-1982* 333307 Trim75 ggagGGGUCCUGGGAGGGUu :|||| |||||||| cuggUCCAG--CCCUCCCAa 2 17 436 453 [mm9:8:67505839-67505856:-] 0.5000 153 7 -26.78 -0.3540 MIMAT0011217 mmu-miR-2141 333307 Trim75 uugAAAAGACUGUG-GAGGa | ||||| ||| |||| ucaUGUUCUG-CACUCUCCu 2 17 34 52 [mm9:8:67506240-67506258:-] 0.4492 122 0 -17.88 -0.1201 MIMAT0015641 mmu-miR-3470b 333307 Trim75 ggucggaccaGAUGUCUCAcu | :|||||| ggauuaaaaaCAGCAGAGUu- 3 12 723 742 [mm9:8:67505550-67505569:-] 0.5143 123 0 -10.14 -0.1420 MIMAT0000121 mmu-let-7g 333307 Trim75 uuGACAUGUUUGAU--GAU-GGAGu || |::|: ||| ||| |||| uaCUAUGUAGUCUAGGCUAGCCUCa 2 21 551 575 [mm9:8:67505717-67505741:-] 0.5000 123 0 -16.17 -0.4964 MIMAT0000150 mmu-miR-138 333307 Trim75 gccgGACUAAGUGUUGUGGUCGa | |:||:||| ||||||| auuaCAGGUUUACAUCACCAGCc 2 20 463 485 [mm9:8:67505807-67505829:-] 0.5000 171 7 -23.29 -0.4922 MIMAT0000165 mmu-miR-155 333307 Trim75 uggggaUAGUGUUAAUCGUAAUu | ||| | ||||||| cuuagaAACACCUUAAGCAUUAa 2 18 691 713 [mm9:8:67505579-67505601:-] 0.5143 153 7 -12.87 -1.1860 MIMAT0000383 mmu-let-7d 333307 Trim75 uuGAUACGUUGGAU--GAU-GGAGa |||||:|::||| ||| |||| uaCUAUGUAGUCUAGGCUAGCCUCa 2 21 551 575 [mm9:8:67505717-67505741:-] 0.5000 139 0 -23.69 -0.4964 MIMAT0000387 mmu-miR-130b 333307 Trim75 uaCGGGAAAGUAGUA-ACGUGAc |::: ||||| | |||||| agGUUUAUUCAUGUUCUGCACUc 2 21 26 48 [mm9:8:67506244-67506266:-] 0.4492 128 6 -13.05 -0.3556 MIMAT0000521 mmu-let-7a 333307 Trim75 uuGAUAUGUUGGAU--GAU-GGAGu ||||::|::||| ||| |||| uaCUAUGUAGUCUAGGCUAGCCUCa 2 21 551 575 [mm9:8:67505717-67505741:-] 0.5000 135 0 -23.86 -0.4964 MIMAT0000522 mmu-let-7b 333307 Trim75 uuGGUGUGUUGGAU--GAU-GGAGu |:|:::|::||| ||| |||| uaCUAUGUAGUCUAGGCUAGCCUCa 2 21 551 575 [mm9:8:67505717-67505741:-] 0.5000 127 0 -22.02 -0.4964 MIMAT0000523 mmu-let-7c 333307 Trim75 uuGGUAUGUUGGAU--GAU-GGAGu |:||::|::||| ||| |||| uaCUAUGUAGUCUAGGCUAGCCUCa 2 21 551 575 [mm9:8:67505717-67505741:-] 0.5000 131 0 -23.17 -0.4964 MIMAT0000524 mmu-let-7e 333307 Trim75 uuGAUAUGUUGGA--GGAU-GGAGu ||||::|::|| ||| |||| uaCUAUGUAGUCUAGGCUAGCCUCa 2 21 551 575 [mm9:8:67505717-67505741:-] 0.5000 127 0 -23.86 -0.4964 MIMAT0000525 mmu-let-7f 333307 Trim75 uuGAUAUGUUAGAU--GAU-GGAGu ||||::|:|||| ||| |||| uaCUAUGUAGUCUAGGCUAGCCUCa 2 21 551 575 [mm9:8:67505717-67505741:-] 0.5000 139 0 -25.03 -0.4964 MIMAT0000527 mmu-miR-16 333307 Trim75 gcGGUU-AUAAAUGCAC-GACGAu |||| |:| :| || ||||| uaCCAACUGUCAGCCUGUCUGCUg 2 21 210 233 [mm9:8:67506059-67506082:-] 0.5000 123 0 -15.41 -0.1004 MIMAT0000528 mmu-miR-18a 333307 Trim75 gauagacguGAUCUACGUGGAAu :|||| |||||| ucuagaaucUUAGAAACACCUUa 2 15 683 705 [mm9:8:67505587-67505609:-] 0.5143 126 6 -16.18 -0.1115 MIMAT0004651 mmu-miR-340-5p 333307 Trim75 uuaGUCAGAGUAACGAAAUAUu | | | :| ||||||| ugaCUGGCCUAGACCUUUAUAu 2 20 173 194 [mm9:8:67506098-67506119:-] 0.5000 143 7 -5.96 -0.1248 MIMAT0000662 mmu-miR-216a 333307 Trim75 agUGUCAAC-GGUCG---ACUCUAAu ||| || ||||| ||||||| ucACAAAUGCCCAGCCUUUGAGAUUu 2 21 634 659 [mm9:8:67505633-67505658:-] 0.5045 158 7 -22.51 -0.7075 MIMAT0000663 mmu-miR-218 333307 Trim75 uguACCAAUCUAGUUCGUGUu ||| | | |||||||| aucUGGGUUUA-CAAGCACAg 2 19 255 274 [mm9:8:67506018-67506037:-] 0.5000 152 7 -18.17 -0.2555 MIMAT0000746 mmu-miR-381 333307 Trim75 uguCUCUCGAAC--GGGAAC-AUAu ||| || || |:|||| ||| cguGAGCGCCUGUACUCUUGCUAUg 2 20 142 166 [mm9:8:67506126-67506150:-] 0.5000 126 0 -14.47 -0.2382 MIMAT0001091 mmu-miR-410 333307 Trim75 uguCCGG---UAGACACAAUAUAa |||| | || |||||||| gcuGGCCCCAAGCU-UGUUAUAUa 2 19 66 88 [mm9:8:67506204-67506226:-] 0.5000 151 7 -15.18 -0.5787 MIMAT0001095 mmu-miR-370 333307 Trim75 ugguCCAAGGUGGGGUCGUCcg || |: | |||||| aauuGGAUUAAAAACAGCAGag 3 19 719 740 [mm9:8:67505552-67505573:-] 0.5143 126 0 -12.63 -0.1194 MIMAT0003727 mmu-miR-374 333307 Trim75 gugAAUCGU-CCAACAUAA-UAUa ||| || ||| |||| ||| ggaUUA-CAUGGUCUUAUUGAUAg 2 20 110 132 [mm9:8:67506160-67506182:-] 0.5000 120 0 -6.13 -0.3473 MIMAT0003893 mmu-miR-761 333307 Trim75 acACAGUCAAAGUGGGAC-GACg || :| | | |||||| ||| cuUGCUA-UGUAACCCUGACUGg 2 21 158 179 [mm9:8:67506113-67506134:-] 0.5000 122 0 -15.03 -0.2448 MIMAT0003453 mmu-miR-497 333307 Trim75 auGUUUGGU-GUCACAC-GACGAc | |||:: ||| || ||||| uaCCAACUGUCAGCCUGUCUGCUg 2 21 210 233 [mm9:8:67506059-67506082:-] 0.5000 123 0 -17.80 -0.1004 MIMAT0003482 mmu-miR-499 333307 Trim75 uuuguagUGACG-UUCAGAAUu ||| | |||||||| uuuuuaaACUUCUAAGUCUUAc 2 15 299 320 [mm9:8:67505972-67505993:-] 0.5000 153 7 -10.61 -0.8798 MIMAT0004858 mmu-miR-18b 333307 Trim75 gauUGUCGUGAUCUACGUGGAAu | | : :|||| |||||| ucuAGAAUCUUAGAAACACCUUa 2 21 683 705 [mm9:8:67505587-67505609:-] 0.5143 128 6 -17.87 -0.1115

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G071923 Trim75 Mus musculus 333307

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Trim75 mmu-miR-218 beg:257 end:275 pic:3' TGTACCAATCTAGTTCGTGTT 5'& |||| ||||||||. &5' ----GGTTTA--CAAGCACAG 3' Trim75 mmu-miR-683 beg:720 end:739 pic:3' CTCCTGTGTCGAATGTCGTCC 5'& |||. ||||||| &5' --GGATTAAAA--ACAGCAG- 3' Trim75 mmu-miR-1942 beg:316 end:327 pic:3' GTTGGTCTACTTCTGTAGACT 5'& |||||||| &5' -------------ACATCTGA 3' Trim75 mmu-miR-155 beg:698 end:714 pic:3' TGGGGATAGTGTTAATCGTAATT 5'& ||.|| |||||||| &5' --CCTTA--------AGCATTAA 3' Trim75 mmu-miR-378 beg:47 end:66 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& ||||| | || ||||||| &5' CCTTC---C-CCCAGTCCAG- 3' Trim75 mmu-miR-499 beg:303 end:320 pic:3' TTTGTAGTGAC-GTTCAGAATT 5'& ||| .|||||||| &5' -------ACTTCTAAGTCTTA- 3' Trim75 mmu-miR-872star beg:352 end:368 pic:3' TCCTCCGATGACGTTATCAAGT 5'& ||||| |||||||| &5' -----GCTAC----ATAGTTCA 3' Trim75 mmu-miR-582-5p beg:202 end:220 pic:3' TCATTGACCAACTT---GTTGACAT 5'& |||||.. ||||||| &5' -------GGTTGGGTACCAACTGT- 3' Trim75 mmu-miR-138 beg:466 end:485 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& |.||.||| ||||||| &5' ------GGTTTACATCACCAGC- 3' Trim75 mmu-miR-674 beg:227 end:247 pic:3' ATGTGGT-GAGGGTAGAGTCACG 5'& .|.. |||||||||||| &5' ---GCTGTCTCCCATCTCAG--- 3' Trim75 mmu-miR-762 beg:431 end:449 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& | ||.|| .|||||||. &5' -----G-CCTGG-TCCAGCCCT 3' Trim75 mmu-miR-3099 beg:396 end:415 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& .||||| ||||||| &5' ---TCAACCGGG--CTAGCCT- 3' Trim75 mmu-miR-547 beg:197 end:216 pic:3' GAGTGAGTTTCTA-CATGGTTC 5'& |||.. ||||||| &5' -----TCAGGTTGGGTACCAA- 3' Trim75 mmu-miR-706 beg:666 end:686 pic:3' AAAAAACTCTGTCC-CAAAGAGA 5'& || ||| |||||||| &5' ------GATACATTAGTTTCTCT 3' Trim75 mcmv-miR-m108-1 beg:488 end:503 pic:3' GCTGTGCTCGGTGGCAGTCTTT 5'& |||.| ||||||| &5' ---------CCATC-TCAGAAA 3' Trim75 mghv-miR-M1-5 beg:234 end:250 pic:3' CTCTGCTGGGCTAGAGTTGAGA 5'& ||| ||||||.||. &5' -------CCC-ATCTCAGCTT- 3' Trim75 mghv-miR-M1-6 beg:668 end:683 pic:3' TTTTGGTGGAGTGT-GTCAAAGT 5'& .||| .|||||| &5' ----------TACATTAGTTTC- 3' Trim75 mmu-miR-1188 beg:432 end:453 pic:3' AGGACCGGGTTGGAGTGTGGT 5'& |||||.|||.|| | | ||| &5' -CCTGGTCCAGCC-CTC-CCA 3' Trim75 mmu-miR-1193 beg:5 end:16 pic:3' CTATCATTTTGCCCACTGGAT 5'& ||||.||| &5' ------------GGTGGCCT- 3' Trim75 mmu-miR-1193 beg:163 end:184 pic:3' CTATCATTTTG-CCCACTGGAT 5'& |||| | | ||.|||| &5' ----GTAACCCTGACTGGCCTA 3' Trim75 mmu-miR-1198 beg:279 end:300 pic:3' GGTT-CGGTCGGTCCTTGTGTAT 5'& || |.|| || ||||||| &5' -CACTGTCAA-CA--AACACAT- 3' Trim75 mmu-miR-1224 beg:43 end:64 pic:3' GAGGTGGA-GGGGTCAGGAGTG 5'& ||| |.| ||||||||| &5' CTCTCCTTCCCCCAGTCC---- 3' Trim75 mmu-miR-143 beg:351 end:381 pic:3' CTCGATGTCACG--------AAGTAGAGT 5'& ||||||| |. |||||||. &5' -AGCTACATAGTTCAACCTTTTCATCTT- 3' Trim75 mmu-miR-143 beg:223 end:246 pic:3' CTC-GATGTCACGAA-GTAGAGT 5'& | ||.| || || ||||||| &5' --GTCTGCTGT-CTCCCATCTCA 3' Trim75 mmu-miR-15astar beg:0 end:16 pic:3' ACTCCGTCGTGTCATACCGGAC 5'& |||| .|||||| &5' --------CACACGGTGGCCT- 3' Trim75 mmu-miR-1898 beg:400 end:420 pic:3' CTAGGGGACACTTGGAACTGGA 5'& || | |.|||||||. &5' ----CCGGGCTAGCCTTGACT- 3' Trim75 mmu-miR-18a beg:686 end:706 pic:3' GATAGACGTGATCTACGTGGAAT 5'& |||| |||| ||||||| &5' --ATCT----TAGAAACACCTTA 3' Trim75 mmu-miR-18b beg:689 end:706 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& .|||| ||||||| &5' ---------TTAGAAACACCTTA 3' Trim75 mmu-miR-1928 beg:541 end:562 pic:3' CTCGACCGT--TACATCGA 5'& ||| ||.| ||||||. &5' GAGAGGGTACTATGTAGT- 3' Trim75 mmu-miR-1929 beg:675 end:698 pic:3' GAGAC-GAGATATTTCAGGATCTT 5'& | .||| ||.| ||.||||| &5' ----GTTTCTCTAGAATCTTAGAA 3' Trim75 mmu-miR-1944 beg:252 end:276 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& ||| | .|| ||| |||||||| &5' -ATCTGGGTTT-ACA---AGCACAGA- 3' Trim75 mmu-miR-1948 beg:163 end:186 pic:3' GACATGCTCAC-GAGACGGATTT 5'& |||| || || |||||.| &5' -TGTAACCCTGACTG-GCCTAGA 3' Trim75 mmu-miR-1948 beg:326 end:345 pic:3' GACATGCTCACGAG-ACGGATTT 5'& ||| ||||||. &5' -----CGAAACCCCATGCCTAG- 3' Trim75 mmu-miR-1957 beg:186 end:203 pic:3' CAGTATACGAGATGGTGAC 5'& |.||||||| |.|| &5' -TTATATGCTG-ATCA--- 3' Trim75 mmu-miR-1962 beg:629 end:653 pic:3' TACACAGGGTC---AC-GGTCGGAGA 5'& ||.|| || |||||||.| &5' -----TCTCACAAATGCCCAGCCTTT 3' Trim75 mmu-miR-1971 beg:629 end:654 pic:3' AGAGT-----CGGGTCGGAAATG 5'& ||||| |||||||||||. &5' TCTCACAAATGCCCAGCCTTTG- 3' Trim75 mmu-miR-1981 beg:631 end:654 pic:3' CGGTGCAGATTCGGGTCGGAAATG 5'& .||| |||||||||||. &5' -TCACAAAT--GCCCAGCCTTTG- 3' Trim75 mmu-miR-1982star beg:432 end:454 pic:3' GGAG-GGGTCCTGGGAGGGTT 5'& ||| .|||| ||||||||| &5' CCTGGTCCAG--CCCTCCCAA 3' Trim75 mmu-miR-206 beg:276 end:303 pic:3' GGTGTGTGA-AGGAA----TGTAAGGT 5'& ||||||| || |||||.. &5' --ACACACTGTCAACAAACACATTTT- 3' Trim75 mmu-miR-2135 beg:174 end:191 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& .||||. ||||||.| &5' ----TGGCCT--AGACCTTT 3' Trim75 mmu-miR-2140 beg:31 end:48 pic:3' TGGTGGTTCTAGACGTGGA 5'& .|| |||||||. &5' ----TCATGTTCTGCACT- 3' Trim75 mmu-miR-216a beg:638 end:659 pic:3' AGTGTCAAC-GGTCG---ACTCTAAT 5'& || ||||| ||||||| &5' -------TGCCCAGCCTTTGAGATT- 3' Trim75 mmu-miR-221 beg:544 end:562 pic:3' CTTTGGGTCGTCTGTTACATCGA 5'& || . || ||||||. &5' -------AGGGTACTATGTAGT- 3' Trim75 mmu-miR-222 beg:550 end:572 pic:3' TGGGT-CATC-GGTCTACATCGA 5'& |.| |||| |.||. |||| &5' --CTATGTAGTCTAGGC-TAGC- 3' Trim75 mmu-miR-26a beg:562 end:583 pic:3' TCGGATAGGACCTAATGAACTT 5'& || ||| ||| |||||| &5' AGGCTAGCCTCAA--ACTTGA- 3' Trim75 mmu-miR-26b beg:564 end:583 pic:3' TGGATAGGACTTAATGAACTT 5'& ||| ||| || |||||| &5' --CTAGCCTCAA--ACTTGA- 3' Trim75 mmu-miR-295star beg:649 end:669 pic:3' CTTCACACG--GGGTGTAAACTCA 5'& || .. .||||||| &5' ------TGAGATTTGTATTTGAG- 3' Trim75 mmu-miR-296-3p beg:430 end:450 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& ||||| .|||.||||| &5' ----AGCCTGG-TCCAGCCCTC 3' Trim75 mmu-miR-3099 beg:553 end:574 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& . .| || ||||||| &5' --TGTAGTCTAGG-CTAGCCT- 3' Trim75 mmu-miR-3099star beg:589 end:599 pic:3' GTTCCCGACCTTCCTTCGACC 5'& ||.|||| &5' -------------GAGGCTG- 3' Trim75 mmu-miR-30a beg:246 end:268 pic:3' GAAGGTCAGCT-CCTACAAATGT 5'& ||||| || || ||||||| &5' CTTCCTGTATCTGG--GTTTACA 3' Trim75 mmu-miR-30a beg:455 end:477 pic:3' GAAGGTCAGCTCCTACAAATGT 5'& |. || ||||||| &5' --TTTGGTATTACAGGTTTACA 3' Trim75 mmu-miR-30astar beg:525 end:549 pic:3' CGACGTTTGTAGGC-TGACTTTC 5'& .||| |. |. |||||.|| &5' -TTGCCTATTTTATAACTGAGAG 3' Trim75 mmu-miR-30bstar beg:233 end:247 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& ||| ||||.||| &5' ----------TCC-CATCTCAG 3' Trim75 mmu-miR-30bstar beg:487 end:500 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& || ||||.||| &5' -----------CC-CATCTCAG 3' Trim75 mmu-miR-30c-2star beg:227 end:241 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& ||. ||||||| &5' ----------GCTGTCTCCCA- 3' Trim75 mmu-miR-30e beg:246 end:268 pic:3' GAAGGTCAGTT-CCTACAAATGT 5'& ||||| || || ||||||| &5' CTTCCTGTATCTGG--GTTTACA 3' Trim75 mmu-miR-30e beg:455 end:477 pic:3' GAAGGTCAGTTCCTACAAATGT 5'& |. || ||||||| &5' --TTTGGTATTACAGGTTTACA 3' Trim75 mmu-miR-31 beg:146 end:164 pic:3' GTCGATACGGTCGT-AGAACGGA 5'& ||| |.| ||||||. &5' -------GCCTGTACTCTTGCT- 3' Trim75 mmu-miR-31 beg:513 end:533 pic:3' GTCGATACGGTCGT---AGAACGGA 5'& .||| |.|||||| &5' --------TCAGAATATTTTTGCCT 3' Trim75 mmu-miR-331-5p beg:327 end:346 pic:3' CCTAGGGACCCTGGTATGGATC 5'& || || ||||.||||| &5' -GAAACC-----CCATGCCTAG 3' Trim75 mmu-miR-34a beg:269 end:290 pic:3' TGTTGGTCGA-TTCTGTGACGGT 5'& ||| || ||||||.|| &5' -----CAGATCAACACACTGTCA 3' Trim75 mmu-miR-370 beg:464 end:485 pic:3' TGGTCCAAG-GTGG-GGTCGTCCG 5'& ||||||. ||.| ||||| &5' --CAGGTTTACATCACCAGC---- 3' Trim75 mmu-miR-378 beg:432 end:445 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& || .|||||| &5' ----------CCTGGTCCAG- 3' Trim75 mmu-miR-380-3p beg:345 end:363 pic:3' TTCTACACCTGGTATGATGTAT 5'& | |.| .||||||| &5' -------GTTCTAAGCTACATA 3' Trim75 mmu-miR-448 beg:152 end:170 pic:3' TACCCTGTAGGATGTATACGTT 5'& || ||.|.| ||||.|| &5' -----AC-TCTTGC-TATGTAA 3' Trim75 mmu-miR-449b beg:266 end:289 pic:3' CG-GTCGA-TTGTTGTGACGGA 5'& || ||| ||| ||||||.| &5' GCACAGATCAAC-ACACTGTC- 3' Trim75 mmu-miR-464 beg:374 end:397 pic:3' ATAGAGTGTCTTATTTGAACCAT 5'& ||||. ||| ||||||| &5' -ATCTTTGAGATCAT-CTTGGTA 3' Trim75 mmu-miR-485 beg:631 end:653 pic:3' CTTAAGTAG-TGCCGGTCGGAGA 5'& ||| |.| |||||||.| &5' ----TCACAAATGCCCAGCCTTT 3' Trim75 mmu-miR-485 beg:557 end:575 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& .|| |||.|||||| &5' ------GTCTAGGCTAGCCTC- 3' Trim75 mmu-miR-488star beg:243 end:262 pic:3' AACTCTCACGATA---ATAGACCC 5'& ||| |||||||| &5' --------GCTTCCTGTATCTGGG 3' Trim75 mmu-miR-493 beg:173 end:192 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& ||||| | ||||||.| &5' -CTGGC-CTA-----GACCTTTA 3' Trim75 mmu-miR-499 beg:109 end:126 pic:3' TTTGTAGTGACGTTCAGAATT 5'& ||.|| .|||||| &5' ----ATTACAT--GGTCTTA- 3' Trim75 mmu-miR-539 beg:663 end:686 pic:3' TGTGTGGTTCCTAT-----TAAAGAGG 5'& . |||||| .||||||. &5' -----TTGAGGATACATTAGTTTCTCT 3' Trim75 mmu-miR-542-5p beg:154 end:176 pic:3' AGCACTGTACTACTAGGGGCTC 5'& || || .||| |||.|| &5' TCTTGCTATGTAA--CCCTGA- 3' Trim75 mmu-miR-666-5p beg:213 end:233 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& || |||| ||.|.||| &5' ----CTGTCAGCC-TGTCTGCT 3' Trim75 mmu-miR-667 beg:500 end:515 pic:3' GAACCCGACCCACCGTCCACAGT 5'& ||| .||||||. &5' ----------GTGATAGGTGTT- 3' Trim75 mmu-miR-671-5p beg:428 end:452 pic:3' GAGGTCGGGG-AGGTCCCGAAGGA 5'& ||||||. ||||| || || &5' --CCAGCCTGGTCCAGCCCTCCC- 3' Trim75 mmu-miR-672 beg:579 end:604 pic:3' AGTGTGTGTCATG--TGGTTGGAGT 5'& |.|||||||| .| ||||. &5' --ATACACAGTAGAGGCTGACCTT- 3' Trim75 mmu-miR-672 beg:629 end:652 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& || |||| |.| |||.|||. &5' TCTCACAAA-TGC-CCAGCCTT- 3' Trim75 mmu-miR-683 beg:663 end:688 pic:3' CTCCTGTG---TCGAATGTCGTCC 5'& |||||.|| ||.|| | .|| &5' GAGGATACATTAGTTT-CTCTAG- 3' Trim75 mmu-miR-683 beg:578 end:593 pic:3' CTCCTGTGTCGAATGTCGTCC 5'& ||.|| ||||.|| &5' ---GATAC-----ACAGTAG- 3' Trim75 mmu-miR-690 beg:402 end:416 pic:3' AAACCAACACTCGGATCGGAAA 5'& |.| |||||||| &5' ---------GGG-CTAGCCTT- 3' Trim75 mmu-miR-694 beg:504 end:520 pic:3' GAAGTCCGTTGTAAAAGTC 5'& .|||. .||||||| &5' ---TAGGT---GTTTTCAG 3' Trim75 mmu-miR-705 beg:431 end:453 pic:3' ACGGGTGGGGT--GGAGGGTGG 5'& |||.. .||| ||||||| &5' -GCCTGGTCCAGCCCTCCCA-- 3' Trim75 mmu-miR-709 beg:216 end:239 pic:3' AGGAGGACGGA-GACGGAGG 5'& || ||||.|| |||.|||| &5' TCAGCCTGTCTGCTGTCTCC 3' Trim75 mmu-miR-709 beg:34 end:56 pic:3' AGGAGGACG-GAGACGGAGG 5'& . |.|||| |||| |.||| &5' -TGTTCTGCACTCTCCTTCC 3' Trim75 mmu-miR-758 beg:626 end:641 pic:3' ATCACCTGGTCCAGTGTTT 5'& ||| ||||||| &5' -------CCATCTCACAAA 3' Trim75 mmu-miR-760 beg:50 end:70 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& ||||| ||| .|||| ||.| &5' TCCCC-CAG-TCCAG-GCTG 3' Trim75 mmu-miR-762 beg:640 end:652 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& |||||||.. &5' -------------CCCAGCCTT 3' Trim75 mmu-miR-764-5p beg:128 end:152 pic:3' TCCTCCTGTA--CACTCGTGG 5'& |||| |||| ||||||.|| &5' AGGATGACAGGCGTGAGCGCC 3' Trim75 mmu-miR-871 beg:92 end:114 pic:3' GTACTGACCGTGATTAGACTTAT 5'& ||.| |.|.| ||||.|| &5' ---GATTTGTATTCCTCTGGAT- 3' Trim75 mmu-miR-875-3p beg:499 end:520 pic:3' GTATCGGAG-TCATAAAAGTCC 5'& ||. .||.||||||| &5' ---AGTGATAGGTGTTTTCAG- 3' Trim75 mmu-miR-883a-5p beg:229 end:248 pic:3' CATTGACGATGAAG---AGAGTCGT 5'& |||. || ||||||| &5' ------GCTGTCTCCCATCTCAGC- 3' Trim75 mmu-miR-9star beg:74 end:94 pic:3' TGAAAGCCAATAGATCGAAATA 5'& .||| ||||| |||||||. &5' GCTT---GTTATATAGCTTTG- 3' Trim75 mmu-miR-183star beg:597 end:616 pic:3' AATACCGGGAAGCCATTAAGTG 5'& | ||.| |||||||. &5' ----GACCTTGAATTAATTCAT 3' Trim75 mmu-miR-322star beg:22 end:41 pic:3' CACAACGTCGCG-AAGTACAAA 5'& | .|. |||||||| &5' -----GAGGTTTATTCATGTT- 3' Trim75 mmu-miR-30c-1star beg:227 end:241 pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& .|. ||||||| &5' ----------GCTGTCTCCCA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim75 RAID00031693 mmu-miR-6940-5p miRNA MIMAT0027780 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID00037079 mmu-miR-381-3p miRNA MIMAT0000746 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID00340718 mmu-let-7c-5p miRNA MIMAT0000523 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID00492747 mmu-miR-370-3p miRNA MIMAT0001095 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID00580828 mmu-miR-340-5p miRNA MIMAT0004651 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID00613940 mmu-miR-7212-5p miRNA MIMAT0028392 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID00688726 mmu-miR-16-5p miRNA MIMAT0000527 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID00814565 mmu-miR-374b-5p miRNA MIMAT0003727 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID01081267 mmu-miR-18b-5p miRNA MIMAT0004858 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID01354030 mmu-let-7b-5p miRNA MIMAT0000522 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID01396448 mmu-miR-18a-5p miRNA MIMAT0000528 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID01679121 mmu-miR-762 miRNA MIMAT0003892 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID01691674 mmu-miR-410-3p miRNA MIMAT0001091 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID01691976 mmu-miR-3099-3p miRNA MIMAT0014816 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID01839633 mmu-let-7d-5p miRNA MIMAT0000383 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02006664 mmu-let-7f-5p miRNA MIMAT0000525 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02078031 mmu-miR-669i miRNA MIMAT0005840 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02124012 mmu-miR-669j miRNA MIMAT0005838 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02124999 mmu-miR-499-5p miRNA MIMAT0003482 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02193855 mmu-miR-216a-5p miRNA MIMAT0000662 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02240992 mmu-miR-130b-3p miRNA MIMAT0000387 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02334282 mmu-let-7a-5p miRNA MIMAT0000521 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02339699 mmu-miR-218-5p miRNA MIMAT0000663 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02494379 mmu-miR-7031-3p miRNA MIMAT0027967 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02633035 mmu-miR-761 miRNA MIMAT0003893 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02635427 mmu-miR-497a-5p miRNA MIMAT0003453 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02665172 mmu-miR-881-3p miRNA MIMAT0004846 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02795276 mmu-miR-6899-5p miRNA MIMAT0027698 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02977897 mmu-miR-3060-3p miRNA MIMAT0014827 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID02999802 mmu-let-7e-5p miRNA MIMAT0000524 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID03047011 mmu-miR-7656-3p miRNA MIMAT0029819 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID03347197 mmu-miR-101a-5p miRNA MIMAT0004526 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID03395432 mmu-miR-155-5p miRNA MIMAT0000165 Trim75 mRNA 333307 Prediction 0.2202 Trim75 RAID03408038 mmu-miR-7117-5p miRNA MIMAT0028131 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID03547681 mmu-let-7g-5p miRNA MIMAT0000121 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID03646425 mmu-miR-3083-5p miRNA MIMAT0014874 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID03800185 mmu-miR-7648-3p miRNA MIMAT0029799 Trim75 mRNA 333307 Prediction 0.1828 Trim75 RAID03911532 mmu-miR-138-5p miRNA MIMAT0000150 Trim75 mRNA 333307 Prediction 0.1828