DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004520 mmu-let-7i* 225898 Eml3 ucguuccgucaucgAACGCGUc ||||||| ucauacauucccaaUUGCGCAu 2 9 108 129 [mm9:19:9015931-9015952:+] 0.5495 140 7 -9.36 -1.0409 MIMAT0004529 mmu-miR-125b* 225898 Eml3 uccaggguucuuGGACUGAAca ::|||||| gcuggcuuuuucUUUGACUUca 3 11 89 110 [mm9:19:9015912-9015933:+] 0.5495 122 0 -9.03 -0.1825 MIMAT0000152 mmu-miR-140* 225898 Eml3 ggCACCAAGA-UGGGACACCAu || ||| :: ||||||| uuGUCCCUCUGGUACUGUGGUc 2 20 17 38 [mm9:19:9015840-9015861:+] 0.4422 146 7 -17.20 -0.1336 MIMAT0000376 mmu-miR-298 225898 Eml3 cccuUCUUGUCGGGAGGAGACGg || | | | ||||||| acccAGCUCCGACACCCUCUGCu 2 20 197 219 [mm9:19:9016020-9016042:+] 0.5495 147 7 -21.59 -0.1129 MIMAT0003472 mmu-miR-693-5p 225898 Eml3 cuuuuGAAAGCCUAC-ACCGAc :|||| :|| ||||| cagucUUUUCCUGUGCUGGCUu 2 17 75 96 [mm9:19:9015898-9015919:+] 0.5495 120 0 -11.87 -0.9227 MIMAT0003500 mmu-miR-710 225898 Eml3 gagUUGAGAGGGGUUCUGAACc || | | | ||||||| acaAAAUAACAAC-AGACUUGc 2 20 161 181 [mm9:19:9015984-9016004:+] 0.5495 141 7 -12.00 -0.2754 MIMAT0003512 mmu-miR-450b-3p 225898 Eml3 uacguacguUUUACAAGGGUUa | | ||||||| uuugacuucAUACAUUCCCAAu 2 14 101 122 [mm9:19:9015924-9015945:+] 0.5495 141 7 -11.69 -0.9299 MIMAT0004237 mmu-miR-742 225898 Eml3 aaaugggucGUACCACCGAAAg ::|| ||||||| gucuuuuccUGUGCUGGCUUUu 2 14 77 98 [mm9:19:9015900-9015921:+] 0.5495 149 7 -14.22 -0.4620 MIMAT0004870 mmu-miR-453 225898 Eml3 acguuCGAGUGAUAC--UCCGUUGGa ||| :||: | |||||||| gacuuGCUGGCUGAGCCAGGCAACCc 2 20 175 200 [mm9:19:9015998-9016023:+] 0.5495 158 7 -23.43 -0.4592 MIMAT0004884 mmu-miR-466h 225898 Eml3 augugUGUUCGUGU-ACGUGUGu || | | || ||||||| ggcuaACCACCCCACUGCACACa 2 18 141 163 [mm9:19:9015964-9015986:+] 0.5495 152 7 -20.89 -0.6807 MIMAT0005841 mmu-miR-669h-5p 225898 Eml3 cgugagUUGAUAUGU-GGGU-ACGUa ::||| || |||| |||| uggaggGGCUAACCACCCCACUGCAc 2 19 135 160 [mm9:19:9015958-9015983:+] 0.5495 121 0 -16.68 -0.4554 MIMAT0005848 mmu-miR-466j 225898 Eml3 aaUGUGUGUACGUGUACGUGUGu || ||| ||| ||||||| uaAC-CAC-CCCAC-UGCACACa 2 22 144 163 [mm9:19:9015967-9015986:+] 0.5495 147 7 -20.89 -0.6556 MIMAT0007876 mmu-miR-1907 225898 Eml3 uggaggucuAGGAGACGA-CGAg |||| |||| ||| acagucuuuUCCUGUGCUGGCUu 2 14 74 96 [mm9:19:9015897-9015919:+] 0.5495 121 0 -19.88 -0.9324 MIMAT0009424 mmu-miR-1953 225898 Eml3 guCUUCGGACU-CUUGAA-AGGGu || ||: || |: ||| |||| uuGAUGCUGGAUGGUCUUGUCCCu 2 21 1 24 [mm9:19:9015824-9015847:+] 0.4297 123 0 -14.43 -0.4475 MIMAT0009427 mmu-miR-669n 225898 Eml3 ugUGUGUAGGUGUGUGUUUa || | |::|||||||| ccACCCCACUGCACACAAAa 2 19 147 166 [mm9:19:9015970-9015989:+] 0.5495 158 7 -15.92 -0.4552 MIMAT0000123 mmu-miR-1 225898 Eml3 uauguaUGAAGAAAUGUAAGGu ||||| |||||||| ucuuugACUUC-AUACAUUCCc 2 17 99 119 [mm9:19:9015922-9015942:+] 0.5495 158 7 -15.06 -0.9225 MIMAT0000133 mmu-miR-101a 225898 Eml3 aagucAAUAGUG---UCAUGACAu ||:|| | :||||||| uggucUUGUCCCUCUGGUACUGUg 2 17 12 35 [mm9:19:9015835-9015858:+] 0.4422 147 7 -14.31 -0.1400 MIMAT0000145 mmu-miR-133a 225898 Eml3 gucgaccaacuuccCCUGGUUu ||||||| ggccaaaaccccuaGGACCAAg 2 9 51 72 [mm9:19:9015874-9015895:+] 0.5021 140 7 -12.91 -0.3195 MIMAT0000159 mmu-miR-149 225898 Eml3 cccucacuucugUGCCUCGGUCu :| ||||||| acagacuugcugGCUGAGCCAGg 2 12 172 194 [mm9:19:9015995-9016017:+] 0.5495 143 7 -19.53 -0.1547 MIMAT0000219 mmu-miR-24 225898 Eml3 gacaaGGACGACUUGACUCGGu |:||||| :||||||| acagaCUUGCUG-GCUGAGCCa 2 18 172 192 [mm9:19:9015995-9016015:+] 0.5495 163 7 -28.93 -0.2256 MIMAT0000225 mmu-miR-195 225898 Eml3 cgGUUAUAAA--GACACGA-CGAu ||:| ||| ||||||| ||| gaCAGUCUUUUCCUGUGCUGGCUu 2 20 73 96 [mm9:19:9015896-9015919:+] 0.5495 134 0 -18.33 -0.9259 MIMAT0000239 mmu-miR-206 225898 Eml3 ggugugUGAAGGAAUGUAAGGu |||| | |||||||| ucuuugACUU-CAUACAUUCCc 2 17 99 119 [mm9:19:9015922-9015942:+] 0.5495 158 7 -16.38 -0.9225 MIMAT0000526 mmu-miR-15a 225898 Eml3 guGUUUGGUAA-UACACGA-CGAu ||: |: || |||||| ||| gaCAGUCUUUUCCUGUGCUGGCUu 2 21 73 96 [mm9:19:9015896-9015919:+] 0.5495 123 0 -15.08 -0.9292 MIMAT0000527 mmu-miR-16 225898 Eml3 gcgGUUAUAAAUG--CACGA-CGAu ||:| ||| | ||||| ||| ggaCAGUCUUUUCCUGUGCUGGCUu 2 20 72 96 [mm9:19:9015895-9015919:+] 0.5495 126 0 -15.70 -0.9259 MIMAT0000548 mmu-miR-322 225898 Eml3 aggUUUUGUACUUAACGA-CGAc | |||| || ||||| ||| auaACAACA-GACUUGCUGGCUg 2 20 166 187 [mm9:19:9015989-9016010:+] 0.5495 129 0 -16.80 -0.2824 MIMAT0000582 mmu-miR-338-3p 225898 Eml3 guuguuuuaguGACUACGACCu :||||||||| -----------UUGAUGCUGGa 2 12 1 11 [mm9:19:9015824-9015834:+] 0.4297 151 7 -18.21 -0.6269 MIMAT0000616 mmu-miR-101b 225898 Eml3 aagucgauAGUGUCAUGACAu || ::||||||| cuugucccUC-UGGUACUGUg 2 14 16 35 [mm9:19:9015839-9015858:+] 0.4422 143 7 -14.87 -0.1373 MIMAT0000671 mmu-miR-224 225898 Eml3 uugccuuggugaucACUGAAu |||||| gcuggcuuuuucuuUGACUUc 2 8 89 109 [mm9:19:9015912-9015932:+] 0.5495 120 6 -8.52 -0.1043 MIMAT0000769 mmu-miR-133b 225898 Eml3 aucgaccaacuuccCCUGGUUu ||||||| ggccaaaaccccuaGGACCAAg 2 9 51 72 [mm9:19:9015874-9015895:+] 0.5021 140 7 -12.91 -0.3195 MIMAT0003453 mmu-miR-497 225898 Eml3 auguUUGGUGUC-ACACGA-CGAc ||| |||| |||| ||| aaauAACAACAGACUUGCUGGCUg 2 19 164 187 [mm9:19:9015987-9016010:+] 0.5495 121 0 -17.12 -0.2849

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G057794 Eml3 Mus musculus 225898

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Eml3 mmu-miR-669n beg:152 end:166 pic:3' TGTGTGTAGGTGTGTGTTTA 5'& | |||||||| &5' --------CTGCACACAAA- 3' Eml3 mmu-miR-1 beg:102 end:119 pic:3' TATGTATGAAGAAATGTAAGGT 5'& ||||| |||||||| &5' ------ACTTCA-TACATTCC- 3' Eml3 mmu-miR-206 beg:102 end:119 pic:3' GGTGTGTGAAGGAATGTAAGGT 5'& ||||| |||||||| &5' ------ACTTCA-TACATTCC- 3' Eml3 mmu-miR-338-3p beg:0 end:12 pic:3' GTTGTTTTAGTGACTACGACCT 5'& .|||||||||| &5' -----------TTGATGCTGGA 3' Eml3 mmu-miR-24 beg:174 end:193 pic:3' GACAAGGACGACTTGACTCGGT 5'& |.||||| .|||||||| &5' -----CTTGCTG-GCTGAGCCA 3' Eml3 mmu-miR-149 beg:176 end:194 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& || |.| |||||||. &5' -----TGCTGGCT--GAGCCAGG 3' Eml3 mmu-miR-133a beg:62 end:71 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& ||||||| &5' --------------GGACCAA- 3' Eml3 mmu-miR-133b beg:62 end:71 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& ||||||| &5' --------------GGACCAA- 3' Eml3 mmu-miR-101b beg:21 end:36 pic:3' AAGTCGATAGTGTCATGACAT 5'& || ..|||||||. &5' --------TC-TGGTACTGTG 3' Eml3 mmu-miR-101a beg:14 end:36 pic:3' AAGTCAATAGTG---TCATGACAT 5'& ||.|| | .|||||||. &5' -----TTGTCCCTCTGGTACTGTG 3' Eml3 mmu-miR-129-3p beg:126 end:145 pic:3' TACGAAAAACCCCATTCCCGAA 5'& ||||| || |.||||| &5' ----TTTTTCTGG-AGGGGCT- 3' Eml3 mmu-miR-139-5p beg:25 end:37 pic:3' GACCTCTGTGCACGTGACATCT 5'& |.|||||.| &5' ------------GTACTGTGG- 3' Eml3 mmu-miR-140star beg:19 end:38 pic:3' GGC-ACCAAGATGGGACACCAT 5'& || |||| ||||||| &5' CCTCTGGTA-----CTGTGGT- 3' Eml3 mmu-miR-144 beg:16 end:36 pic:3' TCATGTAGT-AGA-TATGACAT 5'& .|| ||| .||||||. &5' -----GTCCCTCTGGTACTGTG 3' Eml3 mmu-miR-1935 beg:198 end:220 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& || |||| || |||||||. &5' --AGCTCCGACACCCTCTGCT- 3' Eml3 mmu-miR-1956 beg:175 end:196 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& ..||||.|| |||| |.| &5' -TTGCTGGCTGAGCCA--GGC- 3' Eml3 mmu-miR-219 beg:69 end:80 pic:3' TCTTAACGCAAACCTGTTAGT 5'& |||||.|| &5' ------------GGACAGTC- 3' Eml3 mmu-miR-27a beg:20 end:37 pic:3' CGCCTTGAATCGGTGACACTT 5'& || | .||||||. &5' ------CTCTGGTACTGTGG- 3' Eml3 mmu-miR-27b beg:20 end:37 pic:3' CGTCTTGAATCGGTGACACTT 5'& || | .||||||. &5' ------CTCTGGTACTGTGG- 3' Eml3 mmu-miR-296-3p beg:133 end:157 pic:3' CCTCTCGGA--GGTGGGTTGGGAG 5'& ||||.| || |||||| ||. &5' GGAGGGGCTAACCACCCCACT--- 3' Eml3 mmu-miR-3470b beg:18 end:42 pic:3' GGTCGGACCA-GATGTCTCACT 5'& || .||||| ||. | ||. &5' CCC-TCTGGTACTGTGGTCTGG 3' Eml3 mmu-miR-450a-3p beg:100 end:123 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& ||| || |||.|||||| &5' -TGACTTCATA-CATTCCCAAT 3' Eml3 mmu-miR-488 beg:63 end:84 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& ||||||| .||||.||||. &5' GACCAAG-GACAGTCTTTT-- 3' Eml3 mmu-miR-675-5p beg:82 end:108 pic:3' TGACAC--CCGGGAAAGGCG-TGGT 5'& ||||| |||..||||. ||. &5' -CTGTGCTGGCTTTTTCTTTGACT- 3' Eml3 mmu-miR-682 beg:145 end:160 pic:3' GTCTGAAGTGACACTGACGTC 5'& ||| |||||| &5' -------CACCCC-ACTGCA- 3' Eml3 mmu-miR-705 beg:139 end:163 pic:3' ACG---GGTGGGGTGGAGGGTGG 5'& || |||||||||. ||| &5' -GCTAACCACCCCACTGCACAC- 3' Eml3 mmu-miR-705 beg:33 end:55 pic:3' AC-GGGTGGGGTGGAGGGTGG 5'& | |. .||||||| |. .|| &5' -GTCTGGCCCCACC-CTGGCC 3' Eml3 mmu-miR-742 beg:80 end:99 pic:3' AAATGGGTCGTACCACCGAAAG 5'& .|| .|| |||||||. &5' ----TCCT--GTGCTGGCTTTT 3' Eml3 mmu-miR-744star beg:218 end:235 pic:3' TCCAACTCCAATCACCGTTGTC 5'& || ||||| |||||.| &5' -GG-TGAGG-----GGCAATA- 3' Eml3 mmu-miR-9 beg:55 end:75 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& || |||| .|||||.|| &5' ----ACCCCTAG--GACCAAGGA 3' Eml3 mmu-miR-92astar beg:139 end:157 pic:3' CATTACGG-TGGTTAGGGGTGGA 5'& ||. |||| ||||||. &5' -----GCTAACCA--CCCCACT- 3' Eml3 mmu-miR-92astar beg:29 end:49 pic:3' CATTACGGT-GGTTAGGGGTGGA 5'& ||. . | . ||||||| &5' ----TGTGGTCTGG-CCCCACC- 3' Eml3 mmu-miR-466h beg:145 end:164 pic:3' ATGTGTGTTCGTGTACGTGTGT 5'& || ||| ||| |||||||| &5' -AC-CACCC-CAC-TGCACACA 3' Eml3 mmu-miR-466j beg:145 end:164 pic:3' AATGTGTGTACGTGTACGTGTGT 5'& || ||| ||| |||||||| &5' --AC-CACCC-CAC-TGCACACA 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Eml3 mmu-miR-1 104 120 AUGUAUGAAGAAAUGUAAGGU ||||| |||||||| ----GACUUCA-UACAUUCCC Eml3 mmu-miR-128a 24 38 UUUUCUCUGGCCAAGUGACACU- |:||| ||||||: -------UCUGGU--ACUGUGGU Eml3 mmu-miR-128b 24 38 CUUUCUCUGGCCAAGUGACACU- |:||| ||||||: -------UCUGGU--ACUGUGGU Eml3 mmu-miR-129-3p 125 146 UACG-AAAAACCCCAUUCCCGAA || ||||| || |:||||| -CGCAUUUUUCUGG-AGGGGCUA Eml3 mmu-miR-133a 134 151 UGUCGACCAACUUCCCC---UGGUU ||:||||| |||| --------CUGGAGGGGCUAACCAC Eml3 mmu-miR-133b 134 151 AUCGACCAACUUCCCC---UGGUU ||:||||| |||| -------CUGGAGGGGCUAACCAC Eml3 mmu-miR-138 193 206 CUAAGUGUUGUGGUCGA- :|||| |||||| ----GGCAAC-CCAGCUC Eml3 mmu-miR-140 122 152 GAUG-GUA--------UCCCAUUUUGGUGAC |:| ||| |||| |||||| UUGCGCAUUUUUCUGGAGGGGCUAACCACC- Eml3 mmu-miR-140* 30 53 AGGCACCAAGA------UGGGACACCAU |:|||| ||| |||||| ACUGUGG-UCUGGCCCCACCCUGG---- Eml3 mmu-miR-149 173 196 CCUCACUUCUG------UGCCUCGGUCU- |||| :| |||||||: ------CAGACUUGCUGGCUGAGCCAGGC Eml3 mmu-miR-152 67 95 GGGUUCAAGACAGU-----ACGUGACU- ||||| | ||| ||::|||: ACCAAGGACAGUCUUUUCCUGUGCUGGC Eml3 mmu-miR-16 72 97 GCGGUUAUAAAU--GCACGAC-GAU | ||:| ||| :|||||| || GGACAGUCUUUUCCUGUGCUGGCUU Eml3 mmu-miR-17-3p 17 39 AUGUUCAC-GGGAG----UGACGUCA- || ||||| ||||::|| -----UUGUCCCUCUGGUACUGUGGUC Eml3 mmu-miR-182 31 59 -ACACUCAAGAU---GGUAA---CGGUUU- ||||: |||: ||| |||||| CUGUGG--UCUGGCCCCACCCUGGCCAAAA Eml3 mmu-miR-188 209 231 -UGGGAGGUGGUACGUUCCCUAC ||||||::|: |::||||: CACCCUCUGCUCGGUGAGGGGC- Eml3 mmu-miR-193 24 45 -GACCCUGAAACAU--CCGGUCAA |||| ||| || |||| UCUGGUACUGUGGUCUGGCCC--- Eml3 mmu-miR-195 67 97 CGGUUAU-------AAA-GACACGAC-GAU |||| ||| |||||||| || ACCAAGGACAGUCUUUUCCUGUGCUGGCUU Eml3 mmu-miR-199a 29 54 CUUGUCCAUCAGACU----UGUGACCC || ||:|||||: || |||| -UACU-GUGGUCUGGCCCCACCCUGGC Eml3 mmu-miR-199b 5 38 CUUGUCC-AUCAGAUU----------UGUGACCC :| || |:|||| || ||| -UGCUGGAUGGUCUUGUCCCUCUGGUACUGUGGU Eml3 mmu-miR-205 199 231 -GUCUGAGGCC-------ACC--UUACUUCCU- ||| ||||| || ::|||:||: CCAG-CUCCGACACCCUCUGCUCGGUGAGGGGC Eml3 mmu-miR-206 88 120 GGUGUGUGAAGGA-----------AUGUAAGGU :| :|||::| |||||||| -UGCUGGCUUUUUCUUUGACUUCAUACAUUCCC Eml3 mmu-miR-24 176 194 GACAAGGACGACUUGACUCGGU- |:||||| :|||||||| ----ACUUGCUG-GCUGAGCCAG Eml3 mmu-miR-27a 7 38 CGCCUU---GAAUCGG-------UGACACUU :||| |||: || ||||||: CUGGAUGGUCUUGUCCCUCUGGUACUGUGGU Eml3 mmu-miR-27b 5 38 -CGUCUUGAAUCGG-------------UGACACUU || |:|: :|:| ||||||: UGCUGGAU--GGUCUUGUCCCUCUGGUACUGUGGU Eml3 mmu-miR-296 125 146 -UGUCCUAACUCCCCCCCGGGA :|| || |||||: CGCAUUUUUCUGGAGGGGCUA- Eml3 mmu-miR-298 64 93 -CCU---UCUUGUCGGG--AGGAGACGG- ||| ||:||||:|: |||| |||: AGGACCAAGGACAGUCUUUUCCUGUGCUG Eml3 mmu-miR-301 99 129 CGAAACUGU--UAUGA------UAACGUGAC ||||||| |||| |||||:| UCUUUGACUUCAUACAUUCCCAAUUGCGCA- Eml3 mmu-miR-301b 99 129 ACGAAACUGU--UAUGG------UAACGUGAC ||||||| |||| |||||:| -UCUUUGACUUCAUACAUUCCCAAUUGCGCA- Eml3 mmu-miR-320 188 206 AAGCGGGAGAGUUGGGUCGAAAA ||| |||||||||| --AGCCAGG-CAACCCAGCUC-- Eml3 mmu-miR-326 179 204 -UGACCUCCU---UCCC--GGGUCUCC :|||| || ||| ||||| UGCUGGCUGAGCCAGGCAACCCAGC-- Eml3 mmu-miR-330 84 106 AGAGACGUCCGGGACACGAAACG || ||| |||::| ||||| CCUGUGCUGGCUUUUU-CUUUGA Eml3 mmu-miR-338 169 189 AGUUGUUUUAGUGACUACGACCU |||||:| |::||| |||| ACAACAGACUUGCUG--GCUGA- Eml3 mmu-miR-345 5 44 CGUGACCU-------------GAUCC-----CCAG-UCGU :||||| ||:| |||| :|| -UGCUGGAUGGUCUUGUCCCUCUGGUACUGUGGUCUGGCC Eml3 mmu-miR-34a 192 221 -UUGUU-GGUCGAUUCUGUG----ACGGU ::||| |||||| ||||| |||: AGGCAACCCAGCUCCGACACCCUCUGCUC Eml3 mmu-miR-34c 136 160 CGUUAGUCGAUUGAU---GUGACGGA :| :|||||| |||||| -GGAGGGGCUAACCACCCCACUGCA- Eml3 mmu-miR-362 57 76 AAGUGUGGAUCCAAGGUUCCUAA || |||||| ||||||| --AACCCCUAGGA-CCAAGGAC- Eml3 mmu-miR-365 220 233 UAUUCCUAAAAAUCCCCGUAAU || ||||||| ---CGGUG----AGGGGCAA-- Eml3 mmu-miR-380-5p 123 151 -CGCGUAC-AAGAUA---CCAGUUGGU- |||||| ||||: || :||||| UGCGCAUUUUUCUGGAGGGGCUAACCAC Eml3 mmu-miR-383 187 222 -UCGGU-------GUCA-----GUGGAAGACUAGA ||||| ||| |||| |||| || GAGCCAGGCAACCCAGCUCCGACACCCUCUGCUCG Eml3 mmu-miR-424 161 189 AGGUUUUGUA-----CUUAACGAC-GAC- |||||:| || |||||| ||| -ACAAAAUAACAACAGACUUGCUGGCUGA Eml3 mmu-miR-425 64 89 CCGCCUG--UGCUGU-----AAGGGCUA |||| | |||| ||||:| --AGGACCAAGGACAGUCUUUUCCUGU- Eml3 mmu-miR-431 176 212 -GGACGUACUG-C-CGGA-CGUU---------CUGU- |:||| ||:| | ||| |||| |||| ACUUGC-UGGCUGAGCCAGGCAACCCAGCUCCGACAC Eml3 mmu-miR-449 140 163 UGGUCGAUUGUUAU-GUGACG-GU- :|||||| |||||| || --GGGCUAACCACCCCACUGCACAC Eml3 mmu-miR-469 206 233 CCUGUGGUU--CUAGUUACUUUCUCCGU- |||||| | ||::||| |:|||| CGACACCCUCUGCUCGGUGA--GGGGCAA Eml3 mmu-miR-488* 65 85 -CUGGUUCUUUGUCGGAAAGUU ||||||| :||||:||||: GGACCAAG-GACAGUCUUUUC- Eml3 mmu-miR-491 131 158 GGAGUACCUUCCCAA-----GGGGUGA- :|| ||||:||| ||||||| UUUC-UGGAGGGGCUAACCACCCCACUG Eml3 mmu-miR-497 64 97 AUGUUUGG----UGUCA--------CACGAC-GAC ::||| ||||| |||||| || --AGGACCAAGGACAGUCUUUUCCUGUGCUGGCUU Eml3 mmu-miR-500 206 233 GACU-UGGGA-ACGGGUC-CA---CGUA || ||||| |||:|:| | ||| -CGACACCCUCUGCUCGGUGAGGGGCAA Eml3 mmu-miR-501* 211 233 GUUUAGGA-ACGGGCC-CA---CGUAA ||| |||:||| | ||| ----CCCUCUGCUCGGUGAGGGGCAA- Eml3 mmu-miR-615 186 224 UUCUC---CCUCUGGGUC--------------CGAGCCU ||| || |||||| |||||| -UGAGCCAGGCAACCCAGCUCCGACACCCUCUGCUCGGU Eml3 mmu-miR-666 71 97 -CCG---AGAGUGUCGACACGGGCGA- || |||: ||||||: ||| AGGACAGUCUUUUC-CUGUGCUGGCUU Eml3 mmu-miR-669b 152 169 UGUACGUGUACGUGUGUUUUGA ||| |||||||||||: ----CCAC-UGCACACAAAAUA Eml3 mmu-miR-674 207 226 AUGUGGUGAGGGUAGAGUCACG ||||| |||: |||:||| GACACC-CUCUG--CUCGGUGA Eml3 mmu-miR-675-5p 29 57 -UGACAC----CCGGGAAAGGCGUGGU- |||||| ||||| || :||| UACUGUGGUCUGGCCCCACCCUGGCCAA Eml3 mmu-miR-677 137 159 AGUCUUCGAUUAGUA--GUGACUU || ||||| || ||||| -GAGGGGCUAACCACCCCACUGC- Eml3 mmu-miR-679 66 92 -UGGUUC---UCAGUGGAGUGUCAGG- |||||| |||| :|| | || | GACCAAGGACAGUCUUUUC-CUGUGCU Eml3 mmu-miR-681 179 197 UCGACGGACGGUCGCUCCGAC |||| ||| ||| |||| UGCUGGCUG--AGCCAGGCA- Eml3 mmu-miR-685 40 57 CACGGAGUGGAGUCGGUAACU ||| |||| ::|||| -GGCCCCACCCUGGCCAA--- Eml3 mmu-miR-686 208 235 AGAAGUGGCAGACC-------CUUCGUUA- |||| |||| | ||||| ---ACACCCUCUGCUCGGUGAGGGGCAAUA Eml3 mmu-miR-689 206 232 CCUG-GGG---CGGCUCGC-CCCUGC ||| ||| ||: :|:| |||:| CGACACCCUCUGCUCGGUGAGGGGCA Eml3 mmu-miR-690 25 45 AAACCA--ACACUCGGAUCGGAAA |||| |||| |:||:||| -CUGGUACUGUG-GUCUGGCCC-- Eml3 mmu-miR-692 220 242 CUCACUCCGCGAG---UUUCUCUA :|||||| || ||||| CGGUGAGGGGCAAUAAAAAGAA-- Eml3 mmu-miR-696 150 164 -GGGUGUCGUUCGUGUGCG ||||| |||||| CCCCACU----GCACACA- Eml3 mmu-miR-701 117 148 AGGU------------AGAUAAAGUCGCCGAUU- ||| |||: || |||||| CCCAAUUGCGCAUUUUUCUGG---AGGGGCUAAC Eml3 mmu-miR-704 61 82 -GAUCCUCGUCUCGUGUACAGA- |||||| || || ||| |||| CCUAGGACCA-AGGACA-GUCUU Eml3 mmu-miR-709 202 221 AGGAGGAC---GGAGACGGAGG |||| |||||||: -GCUCCGACACCCUCUGCUC-- Eml3 mmu-miR-712 214 231 CCAUGGCGGGCCCACUUCCUC |:||:| |||||:||: ---UCUGCUC-GGUGAGGGGC Eml3 mmu-miR-744 179 212 -CGACAA--UCGGGA-------UCGGGGC-GU- |||| |||| |||:||| || UGCUGGCUGAGCCAGGCAACCCAGCUCCGACAC Eml3 mmu-miR-762 22 52 CGAGACA--------GGGCCGGGGUCGGGG- ||||| :|:||||||| |||: CCUCUGGUACUGUGGUCUGGCCCCA-CCCUG Eml3 mmu-miR-764-3p 25 47 UGUCAACGGUGAUACCGGA----GGA || :|||:|||:|| || ----CUGGUACUGUGGUCUGGCCCCA Eml3 mmu-miR-9 57 76 GUAUGUCGAUCUAUUGGUUUCU- || ||||: |||||:|| --AACCCCUAGG--ACCAAGGAC Eml3 mmu-miR-92 216 236 GUCCGGCCCUGUUCACGUUAU- ||: || |:| |||||| --UGCUCGGUGAGGGGCAAUAA Eml3 mmu-miR-1 112 119 AUGUA-----------------------UGAAGAAAUGUAAGGU ||||| |||||||| GUCUUUUCCUGUGCUGGCUUUUUCUUUGACUUCA-UACAUUCCC Eml3 mmu-miR-149 187 194 CCUCACU---------------UCUG------UGCCUCGGUCU |||| :| |||||||: CCACUGCACACAAAAUAACAACAGACUUGCUGGCUGAGCCAGGC Eml3 mmu-miR-206 112 119 --------GGUGUG--------------UGAAGGAAUGUAAGGU |:: | ||||| |||||||| GUCUUUUCCUGUGCUGGCUUUUUCUUUGACUUCA-UACAUUCCC Eml3 mmu-miR-24 185 192 GACAA----------------------GGACGACUUGACUCGGU |:|||| ::|||||||| CCCCACUGCACACAAAAUAACAACAGACUUGCU-GGCUGAGCCAG Eml3 mmu-miR-298 212 219 ------CCUUCUUG----------UCG-GGA----GGAGACGG || ||:| ||| || |||||||: CUUGCUGGCUGAGCCAGGCAACCCAGCUCCGACACCCUCUGCUC Eml3 mmu-miR-710 174 181 GA---GUUGAGAGGGGU-------------------UCUGAACC :||| | ||||| ||||||| GGGGCUAAC-CACCCCACUGCACACAAAAUAACAACAGACUUGC Eml3 mmu-miR-1 100 119 auguaUGAAGAAAUGUAAGGu ||||| |||||||| ctttgACTTC-ATACATTCCc Eml3 mmu-miR-128a 17 36 uuuucucuGGCCAAGUGACACu |:|| :|||||| ttgtccctCTGG--TACTGTGg Eml3 mmu-miR-128b 17 36 cuuucucuGGCCAAGUGACACu |:|| :|||||| ttgtccctCTGG--TACTGTGg Eml3 mmu-miR-129-3p 124 145 uaCG-AAAAACCCCAUUCCCGAa || ||||| || |:||||| gcGCATTTTTCTGG-AGGGGCTa Eml3 mmu-miR-133a 126 150 uGUCGACCAACUUCCCC---UGGUu || :| ||:||||| |||| gCATTTTTCTGGAGGGGCTAACCAc Eml3 mmu-miR-133b 127 150 aucgaccaACUUCCCC---UGGUu ||:||||| |||| catttttcTGGAGGGGCTAACCAc Eml3 mmu-miR-138 187 204 CUAAGU--GUUGUGGUCGA || || |||| |||||| GAGCCAGGCAAC-CCAGCT Eml3 mmu-miR-140 131 152 gAUGGUAUCCCAUUUUGGUGac | |:: |||| |||||| tTTCTGGAGGGGCTAACCACcc Eml3 mmu-miR-140* 15 38 AG-GCACCAAGA-UGGGACACCAu || :|| ||| :: ||||||| TCTTGTCCCTCTGGTACTGTGGTc Eml3 mmu-miR-149 167 194 ccucacuUCUG------UGCCUCGGUCu |||| :| ||||||| taacaacAGACTTGCTGGCTGAGCCAGg Eml3 mmu-miR-17-3p 12 37 auguucAC-GGGAG----UGACGUCA || ||||| ||||::|| tggtctTGTCCCTCTGGTACTGTGGT Eml3 mmu-miR-182 32 57 ACAC----UCAAGAUGGUAACGGUUU |||| :| | ||| | |||||| TGTGGTCTGGCCCCACCCTGGCCAAA Eml3 mmu-miR-188 210 231 UGGGAGGUGGUACGUUCCCuac ||||||::|: |::|||| ACCCTCTGCTCGGTGAGGGgca Eml3 mmu-miR-193 25 47 GACCCUGA-AACA-UCCGGucaa |||| ||| | || |||| CTGGTACTGTGGTCTGGCCccac Eml3 mmu-miR-195 73 96 CGGUUAUAAA--GACACGA-CGAu | ||:| ||| ||||||| ||| GACAGTCTTTTCCTGTGCTGGCTt Eml3 mmu-miR-199a 28 53 CUUGUCCAUCAGACU----UGUGACCc | || ||:|||||: || |||| GTAC-TGTGGTCTGGCCCCACCCTGGc Eml3 mmu-miR-199b 28 53 CUUGUCCAUCAGAUU----UGUGACCc | || ||:||||:: || |||| GTAC-TGTGGTCTGGCCCCACCCTGGc Eml3 mmu-miR-205 209 229 GUCUGAGGCCACCUUACUUCCu || |||:| | | :|||:|| CACCCTCTGCTCG-GTGAGGGg Eml3 mmu-miR-206 99 119 ggugugUGAAGGAAUGUAAGGu |||| | |||||||| tctttgACTT-CATACATTCCc Eml3 mmu-miR-216a 171 193 gUGUC--AACGGUCGACUCuaau |||| ||||::|||||| aACAGACTTGCTGGCTGAGccag Eml3 mmu-miR-24 172 192 gacaaGGACGACUUGACUCGGU |:||||| :|||||||| acagaCTTGCTG-GCTGAGCCA Eml3 mmu-miR-27a 6 37 CG-CCU---UGAAUCGG-------UGACACuu || ||| |||: || |||||| GCTGGATGGTCTTGTCCCTCTGGTACTGTGgt Eml3 mmu-miR-27b 6 37 CGUCUU----GAAUCGG-------UGACACuu || |:| |||: || |||||| GCTGGATGGTCTTGTCCCTCTGGTACTGTGgt Eml3 mmu-miR-296 126 146 uGUCCUAACUCCCCCCCGgga || || || ||||| gCATTTTTCTGGAGGGGCtaa Eml3 mmu-miR-298 193 219 CCUUCUUGUCG-GG----AGGAGACGg || | |||| || ||||||| GGCAACCCAGCTCCGACACCCTCTGCt Eml3 mmu-miR-298 68 91 ccUUCUUGUCGG--GAGGAGACGg |||:||||:| :|||| ||| ccAAGGACAGTCTTTTCCTGTGCt Eml3 mmu-miR-301 99 129 cGAAACUG--UUAUG--A----UAACGUGac ||||||| |||| | |||||:| tCTTTGACTTCATACATTCCCAATTGCGCat Eml3 mmu-miR-301b 98 129 ACGAAACUG--UUAU-----GG-UAACGUGac | ||||||| ||| || |||||:| TTCTTTGACTTCATACATTCCCAATTGCGCat Eml3 mmu-miR-320 185 207 aagcgGGAGAGUUGGGUCGAaaa || |||||||||| ctgagCCAGGCAACCCAGCTccg Eml3 mmu-miR-326 180 205 uGAC---CUCCUUCC--CGGGUCucc ||| ||| ||| ||||| gCTGGCTGAGCCAGGCAACCCAGctc Eml3 mmu-miR-338 157 185 aGU-UGUUUUA--G-UGAC--UACGACCu || ||||||| | || | |||||| gCACACAAAATAACAACAGACTTGCTGGc Eml3 mmu-miR-345 22 43 cGUGACC-UGAUCCCCAG-UCGu | |||| ||| | |||| :|| cCTCTGGTACT-GTGGTCTGGCc Eml3 mmu-miR-34a 193 220 uuGUU-GGUCGAUUCU----GUGACGgu ||| |||||| || | |||| ggCAACCCAGCTCCGACACCCTCTGCtc Eml3 mmu-miR-34c 135 160 cguuaguCGAUUGAU---GUGACGga |||||| | |||||| tggagggGCTAACCACCCCACTGCac Eml3 mmu-miR-362 55 76 aagUGUGGAUCCAAGGUUCCUaa || |||||| ||||||| aaaACCCCTAGG-ACCAAGGAca Eml3 mmu-miR-365 213 234 uauuccuaaaAAUCCCCGUAAU | ||||||| || ctctgctcggTGAGGGGCAATA Eml3 mmu-miR-380-5p 124 149 CGCGU-ACAAGA---UACCAGUUGGU ||||| | |||| : || :||||| GCGCATTTTTCTGGAGGGGCTAACCA Eml3 mmu-miR-383 201 221 UCGGUGUCAGUGGAAGACUAGa |||: | | |||| |||| || AGCT-CCGACACCCTCTGCTCg Eml3 mmu-miR-424 166 187 aggUUUUGUACUUAACGA-CGAC | |||| || ||||| |||| ataACAACA-GACTTGCTGGCTG Eml3 mmu-miR-425 62 89 ccgCCUG--UGCUGU-----AAGGGCua |||| | |||| ||||:| ctaGGACCAAGGACAGTCTTTTCCTGtg Eml3 mmu-miR-431 177 196 GGACGUACUGCCGGACGUUCUGU |:||| ||:| | || ||:|| CTTGC-TGGCTG--AGCCAGGCA Eml3 mmu-miR-449 138 160 ugguCGAUU-GUUAUGUGACGgu ||||| || |||||| agggGCTAACCACCCCACTGCac Eml3 mmu-miR-488* 66 86 CUGGUUCUUUGUC-GGAAAGuu ||||||| :|||| |:|||| GACCAAG-GACAGTCTTTTCct Eml3 mmu-miR-497 66 96 aUGUUUGGUGUC--------ACACGA-CGAc || || |||| |||||| ||| gACCAAGGACAGTCTTTTCCTGTGCTGGCTt Eml3 mmu-miR-500 205 232 GACU-UGGGA-ACGGG----UCCACGUa | || ||||| |||:| ||| ||| CCGACACCCTCTGCTCGGTGAGGGGCAa Eml3 mmu-miR-501* 206 233 GUU-UAGGA-ACGGGC----CCACGUaa |:| | ||| |||:|| || ||| CGACACCCTCTGCTCGGTGAGGGGCAat Eml3 mmu-miR-503 74 96 cGUCAUGACAAGG--GCGA-CGAu |||| || |||| :||| ||| aCAGT-CTTTTCCTGTGCTGGCTt Eml3 mmu-miR-615 201 223 uucuccCUCUGGG-UCCGAGCCu || |||| |||||| agctccGACACCCTCTGCTCGGt Eml3 mmu-miR-666 77 95 CCGAGAGUGUCGACACGGGCGA | ||:|: | ||||||: ||| GTCTTTT-C--CTGTGCTGGCT Eml3 mmu-miR-669b 148 168 uguacGUGUACGUGUGUUUUga ||| ||||||||||| cacccCAC-TGCACACAAAAta Eml3 mmu-miR-674 204 225 AUGUGGUGAGGGUAGAGUCACg | |: ||| |:| |||:||| TCCGACACCCTCTGCTCGGTGa Eml3 mmu-miR-675-5p 30 49 UGACACCCGGGAAAGGCGUGGu ||||||| :|| || |||| ACTGTGG--TCTGGCCCCACCc Eml3 mmu-miR-677 136 159 agUCUUCGAUUAGU--AGUGACuu ||::||||| || ||||| ggAGGGGCTAACCACCCCACTGca Eml3 mmu-miR-679 67 80 UGGUUCUCAGUGGAGUGUCAGg |||||| | |||||| ACCAAG-G-------ACAGTCt Eml3 mmu-miR-681 179 197 uCGACGGACGGUCGCUCCGac |||| ||| ||| |||| tGCTGGCTG--AGCCAGGCaa Eml3 mmu-miR-685 39 59 caCGGAGUGGAGUCGGUaacu ||| |||| ::|||| tgGCCCCACCCTGGCCAaaac Eml3 mmu-miR-686 214 233 AGAAGUGGCAGACCCUUCGUUA ||| | | | || |::||||| TCTGCTCGG--TGAGGGGCAAT Eml3 mmu-miR-690 24 46 AAACCA--ACACUCGGAUCGGaaa | |||| |||| |:||:||| TCTGGTACTGTG-GTCTGGCCcca Eml3 mmu-miR-696 146 164 gGGUGUCGU-UCGUGUGcg |||| || |||||| aCCACCCCACTGCACACaa Eml3 mmu-miR-701 125 146 agGUAGAUAAAG---UCGCCGAUU |||: |||| || |||||| cgCATT--TTTCTGGAGGGGCTAA Eml3 mmu-miR-704 62 80 GAUCCUCGUCUCGUGUACAGA |||||| || || ||| |||| CTAGGACCA-AGGACA-GTCT Eml3 mmu-miR-709 204 221 AGGAGGACGGAGACGGAGg ||| | |||||| ||| TCCGACACCCTCTG-CTCg Eml3 mmu-miR-710 150 181 GAGUUGA-GAGGG-------GU--UCUGAACc | | ||| | | | || ||||||| CCCCACTGCACACAAAATAACAACAGACTTGc Eml3 mmu-miR-712 211 230 ccauGGCGGGCCCACUUCCuc |:||:| |||||:|| ccctCTGCTC-GGTGAGGGgc Eml3 mmu-miR-744 180 209 CGAC--AAUCG-------GGAUCGGGGCgu |||| | ||| || |||:||| GCTGGCTGAGCCAGGCAACCCAGCTCCGac Eml3 mmu-miR-764-3p 30 46 UGUCAACGGUGAUACCGGAGGa || || |:| ||||| || ACTGTGGTC----TGGCC-CCa Eml3 mmu-miR-9 55 74 gUAUGUCGAUCUAUUGGUUUCU | || |||| :|||||:|| aAAACCCCTAG--GACCAAGGA Eml3 mmu-miR-92 214 234 gucCGGCCCUGUUCACGUUAU ||: || |:| |||||| tctGCTCGGTGAGGGGCAATA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Eml3 RAID00346584 mmu-miR-133b-3p miRNA MIMAT0000769 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID00637214 mmu-miR-325-3p miRNA MIMAT0004640 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID00832623 mmu-miR-206-3p miRNA MIMAT0000239 Eml3 mRNA 225898 Prediction 0.2202 Eml3 RAID01079368 mmu-miR-6996-5p miRNA MIMAT0027894 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID01124528 mmu-mir-325 miRNA MI0000597 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID01191558 mmu-miR-7238-3p miRNA MIMAT0028445 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID01191936 mmu-miR-6349 miRNA MIMAT0025092 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID01441422 mmu-miR-322-5p miRNA MIMAT0000548 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID01535610 mmu-miR-5128 miRNA MIMAT0020639 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID01558355 mmu-miR-1a-3p miRNA MIMAT0000123 Eml3 mRNA 225898 Prediction 0.2202 Eml3 RAID01666744 mmu-miR-16-5p miRNA MIMAT0000527 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID01762774 mmu-miR-149-5p miRNA MIMAT0000159 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID01821986 mmu-miR-338-3p miRNA MIMAT0000582 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID01954560 mmu-miR-24-3p miRNA MIMAT0000219 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID02305981 mmu-miR-466n-5p miRNA MIMAT0014893 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID02342194 mmu-miR-137-3p miRNA MIMAT0000149 Eml3 mRNA 225898 Prediction 0.2202 Eml3 RAID02416703 mmu-miR-101a-3p miRNA MIMAT0000133 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID02741013 mmu-miR-466j miRNA MIMAT0005848 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID02994942 mmu-miR-466h-5p miRNA MIMAT0004884 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID03272060 mmu-miR-6382 miRNA MIMAT0025128 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID03341518 mmu-miR-224-5p miRNA MIMAT0000671 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID03394032 mmu-miR-15a-5p miRNA MIMAT0000526 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID03394160 mmu-miR-101b-3p miRNA MIMAT0000616 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID03570767 mmu-miR-1957b miRNA MIMAT0025145 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID03645761 mmu-miR-669m-5p miRNA MIMAT0017346 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID03673727 mmu-miR-195a-5p miRNA MIMAT0000225 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID03846343 mmu-miR-133a-3p miRNA MIMAT0000145 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID03933308 mmu-miR-497a-5p miRNA MIMAT0003453 Eml3 mRNA 225898 Prediction 0.1828 Eml3 RAID03939389 mmu-miR-466m-5p miRNA MIMAT0014882 Eml3 mRNA 225898 Prediction 0.1828