DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004545 mmu-miR-200b* 17972 Ncf4 agGUUACGACGGGU-CAUUCUAc ||: | |: | ||||||| uuCAGGGAGACUGAUGUAAGAUg 2 21 71 93 [mm9:15:78092892-78092914:+] 0.5238 143 7 -17.18 -0.3894 MIMAT0004574 mmu-miR-294* 17972 Ncf4 ucuaucccggagguAAAACUca |||||| ggauucuauuaaguUUUUGAca 3 9 126 147 [mm9:15:78092947-78092968:+] 0.5492 120 0 -6.52 -0.1070 MIMAT0000377 mmu-miR-299* 17972 Ncf4 uacauacacccugccAUUUGGu |||||| accuuuuggauucaaUAAACCa 2 8 152 173 [mm9:15:78092973-78092994:+] 0.5492 120 6 -10.38 -0.1980 MIMAT0004619 mmu-miR-200a* 17972 Ncf4 aggUCGUGACAGGCCAUUCUAc || |||| : ||||||| gggAG-ACUGAU--GUAAGAUg 2 20 75 93 [mm9:15:78092896-78092914:+] 0.5238 146 7 -15.86 -0.3606 MIMAT0004640 mmu-miR-325 17972 Ncf4 aacuauccuccacGAGUUAUUu :||||||| ucuaccuuuuggaUUCAAUAAa 2 10 149 170 [mm9:15:78092970-78092991:+] 0.5492 141 7 -9.25 -1.0285 MIMAT0004649 mmu-miR-339-3p 17972 Ncf4 gccGAGACAG---CGGCUCCGCGAGu || || | | ||:||||||| accCUGUGGCAAGGACGGGGCGCUCa 2 21 10 35 [mm9:15:78092831-78092856:+] 0.5641 155 7 -31.16 -1.1307 MIMAT0001637 mmu-miR-452 17972 Ncf4 cagagucaaaggagACGUUUGu ||||||| agacugauguaagaUGCAAACc 2 9 78 99 [mm9:15:78092899-78092920:+] 0.5238 140 7 -9.46 -0.4336 MIMAT0002111 mmu-miR-470 17972 Ncf4 ugagUGGUCACGGUCAGGUUCUu :|| | || ||||||| aaggGCCUUUACC-UUCCAAGAa 2 20 39 60 [mm9:15:78092860-78092881:+] 0.4796 145 7 -15.90 -0.6555 MIMAT0003733 mmu-miR-665 17972 Ncf4 uccCUGGAGUCGGAGGACCa ||: | |||||||| uaaGAUGCAAACCUCCUGGc 2 18 87 106 [mm9:15:78092908-78092927:+] 0.5365 149 7 -19.27 -0.2091 MIMAT0003736 mmu-miR-670 17972 Ncf4 aagUG-GUGUAUGUGAGUCCCUa || |: | || :||||||| agaACACGGAGACCUUCAGGGAg 2 20 57 79 [mm9:15:78092878-78092900:+] 0.5017 154 7 -22.28 -0.1861 MIMAT0004888 mmu-miR-493 17972 Ncf4 ggacCGUGUGUCAUCCUGGAAGu | ||||:| | ||||||| ccaaGAACACGG-A-GACCUUCa 2 20 54 74 [mm9:15:78092875-78092895:+] 0.5017 155 7 -22.57 -0.6453 MIMAT0009445 mmu-miR-1274a 17972 Ncf4 accgcggacuUGUCCCU-GGACu ||||||| |||| -------gucACAGGGACCCUGu 2 13 1 16 [mm9:15:78092822-78092837:+] 0.6064 124 0 -19.98 -0.1831 MIMAT0009446 mmu-miR-1971 17972 Ncf4 agAGUCGGGU--CGGAAAUg ||||| | ||||||| gcUCAGCAAAGGGCCUUUAc 2 17 31 50 [mm9:15:78092852-78092871:+] 0.4796 151 7 -24.11 -0.1753 MIMAT0009456 mmu-miR-1839-5p 17972 Ncf4 guUCUGGACAAGAUAGAUGGAa || ::| | ||||||| uaAGUUUUUGACACUCUACCUu 2 21 135 156 [mm9:15:78092956-78092977:+] 0.5492 144 7 -14.77 -0.8714 MIMAT0009458 mmu-miR-1981 17972 Ncf4 cggUGCAGAUUCGGGU--CGGAAAUg :|| || ||| | ||||||| gggGCG-CUCAGCAAAGGGCCUUUAc 2 22 26 50 [mm9:15:78092847-78092871:+] 0.4796 150 7 -20.29 -0.1736 MIMAT0012772 mmu-miR-599 17972 Ncf4 caaacuauuuGACUGUGuu :|||||| uauuaaguuuUUGACACuc 3 10 132 150 [mm9:15:78092953-78092971:+] 0.5492 121 0 -8.61 -0.1114 MIMAT0015641 mmu-miR-3470b 17972 Ncf4 ggucGGACCAGAUGUCUCACu ||||| | ||||||| accuCCUGGCC--CAGAGUGc 2 18 97 115 [mm9:15:78092918-78092936:+] 0.5365 154 7 -23.41 -0.1095 MIMAT0000559 mmu-miR-326 17972 Ncf4 ugaccuccuucCCGGGUCUCc ||||||||| gcaaaccuccuGGCCCAGAGu 2 11 93 113 [mm9:15:78092914-78092934:+] 0.5365 150 7 -18.61 -0.1809 MIMAT0004642 mmu-miR-330 17972 Ncf4 cgGAUUCUGUGUCCGGGUCUCu | || : | ||||||||| ugCAAACCUCCUGGCCCAGAGu 2 21 92 113 [mm9:15:78092913-78092934:+] 0.5365 156 7 -23.70 -0.1776

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G063357 Ncf4 Mus musculus 17972 23478803 -44 -30 R62505; MOUSE$NCF4_01; Binding factors: AhR , arnt:AhR

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ncf4 mmu-miR-3470b beg:98 end:115 pic:3' GGTCGGACCAGATGTCTCACT 5'& ||||| | ||||||| &5' ----CCTGG-CC-CAGAGTG- 3' Ncf4 mmu-miR-326 beg:101 end:113 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& ||||||||| &5' -----------GGCCCAGAG- 3' Ncf4 mmu-miR-665 beg:87 end:106 pic:3' TCCCTGGAGTC-GGAGGACCA 5'& ||. || |||||||| &5' ---GATG-CAAACCTCCTGG- 3' Ncf4 mmu-miR-493 beg:57 end:75 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& ||||.| |||||||| &5' ------ACACGGA--GACCTTCA 3' Ncf4 mmu-miR-1971 beg:31 end:51 pic:3' AGAGTCGGG--TCGGAAATG 5'& |||||| .|||||||| &5' -CTCAGCAAAGGGCCTTTAC 3' Ncf4 mmu-miR-1981 beg:32 end:51 pic:3' CGGTGCAGATTCGGG--TCGGAAATG 5'& ||| .|||||||| &5' ----------AGCAAAGGGCCTTTAC 3' Ncf4 mmu-miR-200astar beg:75 end:94 pic:3' AGGTCGTGACAGGCCATTCTAC 5'& || |||| |||||||| &5' ---AG-ACTGAT--GTAAGATG 3' Ncf4 mcmv-miR-m01-3 beg:33 end:52 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& |||| .| | |||.||| &5' -----GCAAAGGGC-CTTTACC- 3' Ncf4 mghv-miR-M1-7-5p beg:135 end:158 pic:3' TCCAATGGCGTG-GAGGTGGAAA 5'& ||| ..| || |||.|||||| &5' --GTTTTTG-ACACTCTACCTTT 3' Ncf4 mghv-miR-M1-7-5p beg:38 end:54 pic:3' TCCAATGGCGTGGAGGTGGAAA 5'& | .|||..||||| &5' --------GGGCCTTTACCTT- 3' Ncf4 mmu-let-7b beg:141 end:157 pic:3' TTGGTGTGTTG-GATGATGGAGT 5'& .|| || ||||||. &5' --------GACACT-CTACCTT- 3' Ncf4 mmu-let-7c beg:141 end:157 pic:3' TTGGTATGTTG-GATGATGGAGT 5'& .|| || ||||||. &5' --------GACACT-CTACCTT- 3' Ncf4 mmu-let-7d beg:141 end:158 pic:3' TTGATACGTTG-GATGATGGAGA 5'& .|| || ||||||.| &5' --------GACACT-CTACCTTT 3' Ncf4 mmu-miR-122 beg:135 end:153 pic:3' GTTTGTGGTAACAG----TGTGAGGT 5'& ||. ||||||.| &5' -----------GTTTTTGACACTCTA 3' Ncf4 mmu-miR-125a-5p beg:58 end:79 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& |||.| || .||||||| &5' -CACGG-----AGACCTTCAGGGA 3' Ncf4 mmu-miR-1839-5p beg:135 end:157 pic:3' GTTCTGGACAAGAT-----AGATGGAA 5'& |||.| |||||||| &5' --------GTTTTTGACACTCTACCTT 3' Ncf4 mmu-miR-1961 beg:138 end:157 pic:3' AAGATTGAT-GATGGAGT 5'& ||.|.|| ||||||. &5' TTTTGACACTCTACCTT- 3' Ncf4 mmu-miR-2135 beg:55 end:72 pic:3' CAAAGCCGG-GGTTCTGGAGA 5'& | | | .||||||. &5' -----GAACACGGAGACCTT- 3' Ncf4 mmu-miR-222 beg:7 end:31 pic:3' TGGGTCATCGG-TCTACATCGA 5'& |||| ||.|| .|| | || &5' ACCCTGTGGCAAGGACGGGGC- 3' Ncf4 mmu-miR-299star beg:156 end:174 pic:3' TACATACACCCTGCC--ATTTGGT 5'& |||. ||||||| &5' ---------GGATTCAATAAACCA 3' Ncf4 mmu-miR-302cstar beg:2 end:24 pic:3' CGTCCATTGGGGTACAATTTCG 5'& |||| .||||..|| ||.| &5' -CAGG-GACCCTGTGGCAAGG- 3' Ncf4 mmu-miR-325star beg:107 end:123 pic:3' TGTGAATGACTCGTGGATGATCC 5'& ||| ||||||.| &5' ---------GAGTGCCTACTGG- 3' Ncf4 mmu-miR-327 beg:66 end:77 pic:3' TAGGAGTACGGGGAGTTCA 5'& ||.|||.| &5' ----------CCTTCAGG- 3' Ncf4 mmu-miR-330 beg:90 end:113 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& || | | ||||||||| &5' GCAAACCTC-CTGGCCCAGAG- 3' Ncf4 mmu-miR-33 beg:80 end:96 pic:3' ACGTTACGTTGATGTTACGTG 5'& .|||.|| .||||| &5' ---GATGTAA----GATGCA- 3' Ncf4 mmu-miR-351 beg:60 end:79 pic:3' GTCCGAGTTTCCCGAGGAGTCCCT 5'& |..|| | |.||||||| &5' ------CGGAGA-C-CTTCAGGGA 3' Ncf4 mmu-miR-432 beg:40 end:60 pic:3' GACGGGTGACTAGATG--AGGTTCT 5'& |||. .||| ||||||| &5' --GCCT------TTACCTTCCAAGA 3' Ncf4 mmu-miR-470 beg:40 end:61 pic:3' TGAGTGGTCACGGTCAGGTTCTT 5'& .|| || |||||||| &5' ----GCCTTTACCT-TCCAAGAA 3' Ncf4 mmu-miR-670 beg:58 end:79 pic:3' AAGTGGTGTA--TGTGAGTCCCTA 5'& |||. || .||||||| &5' -----CACGGAGACCTTCAGGGA- 3' Ncf4 mmu-miR-691 beg:67 end:79 pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& |||||||.| &5' ------------CTTCAGGGA- 3' Ncf4 mmu-miR-692 beg:62 end:81 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& ||| | .|||..|||| &5' ----GAGACCTTCAGGGAGA- 3' Ncf4 mmu-miR-720 beg:61 end:81 pic:3' ACCTCCGG-GGTCGCTCTA 5'& |||| || .||| |||| &5' -GGAGACCTTCAGGGAGA- 3' Ncf4 mmu-miR-743b-5p beg:107 end:126 pic:3' ACTACCTGTGGTCAGACTTGT 5'& | ..|| |||.||| &5' ----GAGTGCCTA-CTGGACA 3' Ncf4 mmu-miR-883a-5p beg:20 end:39 pic:3' CATTGACGATGAAGAGAGTCGT 5'& .|| .| ||||||| &5' --GACGGG-GCG---CTCAGCA 3' Ncf4 mmu-miR-93 beg:110 end:131 pic:3' GATGGACGTGCTTGTCGTGAAAC 5'& |.||| | .|.|||| |.| &5' -TGCCTAC-TGGACAGGATT--- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Ncf4 mmu-miR-122a 122 154 -UGUUUGU-GGUAA--CAG----UGUGAGGU- |||:: |:||| ||: ||||||:| GACAGGAUUCUAUUAAGUUUUUGACACUCUAC Ncf4 mmu-miR-124a 27 49 -CCGUAAGUGGCG-CACGGAAU |||: ||| | | ||||| GGGCGCUCAGCAAAGGGCCUUU Ncf4 mmu-miR-125a 2 45 -GUGUCCA------AUU-------UCCCA-GAGUC----CCU |||||| |:: :||| ||||| ||: UCACAGGGACCCUGUGGCAAGGACGGGGCGCUCAGCAAAGGGC Ncf4 mmu-miR-125b 17 45 AGUGUUCAA-UCCCA-GAGUC----CCU- :|||| :||| ||||| ||: -GGCAAGGACGGGGCGCUCAGCAAAGGGC Ncf4 mmu-miR-129-3p 17 46 UACGAAAAA-CCCCA--------UUCCCGAA || |||| |||||| -GGCAAGGACGGGGCGCUCAGCAAAGGGCC- Ncf4 mmu-miR-140* 6 20 AGGCACCAAGAUGGGACACCAU || ||||||||| ----AGGG---ACCCUGUGGC- Ncf4 mmu-miR-149 7 38 -CCU----CACU---UCUGUGCCUCG-GUCU ||| |||: :|||: || || ||| GGGACCCUGUGGCAAGGACGGGGCGCUCAGC Ncf4 mmu-miR-17-3p 109 128 AUGUUCACGGGAGUGAC--GUCA :||||||: |||| ||| --AGAGUGCCU--ACUGGACAGG Ncf4 mmu-miR-193 6 24 GACCCUGAAACAUCCGGUCAA ||||| ||| ||| || -AGGGACCCUGU-GGCAAGG- Ncf4 mmu-miR-201 56 90 -UCUUGUUAC---GGAA-------UGACU-CAU- |||||| | |||| ||||| ||| AAGAACACGGAGACCUUCAGGGAGACUGAUGUAA Ncf4 mmu-miR-204 16 45 GUCCGUAUCCUAC---------UGUUUCCCUU |||| |||| | :||||||| -UGGCA-AGGACGGGGCGCUCAGCAAAGGGC- Ncf4 mmu-miR-211 16 45 UCCGUU----UCCUAC----UGUUUCCCUU ||||| :|| | :||||||| UGGCAAGGACGGGGCGCUCAGCAAAGGGC- Ncf4 mmu-miR-212 62 85 CCGGCA-CUGA-----CCUCUGACAAU || ||| |||||||| --ACGGAGACCUUCAGGGAGACUGA-- Ncf4 mmu-miR-214 98 123 -GACGGACAGA----CACGGACGACA || |||| |||||| ||| CCU-CCUGGCCCAGAGUGCCUACUGG Ncf4 mmu-miR-25 77 98 AGUCUGGCUCUGUUC-ACGUUAC ||||:|| :||| ||||| -GAGACUGAUGUAAGAUGCAAA- Ncf4 mmu-miR-293 2 22 UGUGAUGUUUGAGACGCCGUGA ||| | ::|| |||:|||| UCAC-AGGGACCCUGUGGCAA- Ncf4 mmu-miR-296 3 49 -UGUCCUAA-----------CU-CCCC-----------CCCGGGA |||||: || |||| |||||:| CACAGGGACCCUGUGGCAAGGACGGGGCGCUCAGCAAAGGGCCUUU Ncf4 mmu-miR-325 109 124 UGUGAAUGACUCGUGGAUGAUCC |||::||||||:| --------AGAGUGCCUACUGGA Ncf4 mmu-miR-328 21 47 UGCCU-UCCCGUC--UC---UCCCGGUC ||| :||||: || |||||| -AGGACGGGGCGCUCAGCAAAGGGCCU- Ncf4 mmu-miR-339 6 31 ACUC-GAGGAC-C---UCCUGUCCCU |:| | |||| | |||||:||| AGGGAC-CCUGUGGCAAGGACGGGGC Ncf4 mmu-miR-345 17 40 -CGUGACCUGAUCCC-C-AGUCGU- ||| |||| :||| | |||||| GGCAA-GGAC-GGGGCGCUCAGCAA Ncf4 mmu-miR-346 14 46 UCUCCG-------UCCGUGAG------CCCGUCUGU | ||| :|||:||| |||| UGUGGCAAGGACGGGGCGCUCAGCAAAGGGCC---- Ncf4 mmu-miR-351 26 80 GUCCGA-----GUUUCCCG--------AGG---------- A GUCCCU :||| |||||||| ||| | |||||| GGGGCGCUCAGCAAAGGGCCUUUACCUUCCAAGAACACGGAGACCUUCAGGGAG Ncf4 mmu-miR-362 1 26 AAGUGU-----GGAU-CCAAGGUUCCUAA ||||| |||: || |||||| GUCACAGGGACCCUGUGG---CAAGGAC- Ncf4 mmu-miR-370 4 32 UUGGUCCAAGGUGGGG--UCG-------UCCG- |||| ||||: :|| :||| --ACAGGG---ACCCUGUGGCAAGGACGGGGCG Ncf4 mmu-miR-378 59 79 -UGUGUC-CUGGACCUCAGUCCUC ||||:| ||||| |||||: AACACGGAGACCU----UCAGGGA Ncf4 mmu-miR-431 11 46 -GGACGUA----CUGCC-----GGACGU--UCUGU ||||:: ||||| :| ||| :|:| CCCUGUGGCAAGGACGGGGCGCUCAGCAAAGGGCC Ncf4 mmu-miR-469 63 97 -CCUGUGG------UUCUAGUUACUUUCUCCGU- ||| ||| :||| ::||| |||| ||| CGGAGACCUUCAGGGAGACUGAUGUAAGAUGCAA Ncf4 mmu-miR-470 29 62 AGUG-GUCA-----CGGUC-----AGGUUCUU- |:| ||| ||| |||||||| GCGCUCAGCAAAGGGCCUUUACCUUCCAAGAAC Ncf4 mmu-miR-484 6 48 UAGCCCU---------------CCCC-UGA-------CUCGGACU |||| |||| :|| |:|||| --AGGGACCCUGUGGCAAGGACGGGGCGCUCAGCAAAGGGCCUU- Ncf4 mmu-miR-486 24 45 GAGCCCCGUCGAGUCAUGUCCU- |||||| |||||| |||: -ACGGGGC-GCUCAGCAAAGGGC Ncf4 mmu-miR-490 63 78 GUCGUACCUCAGGAGGUCCAAC |||| |||:|||| -----CGGAGACCUUCAGGG-- Ncf4 mmu-miR-491 97 122 -GGAGUACCU--UCCCAAGGGGUGA- |||| ||| || || ||:||| ACCUCCUGGCCCAGAGUG-CCUACUG Ncf4 mmu-miR-500 80 117 -GACU------------UGGGAA--CGGGUC-CACGUA |||| |||: |||||| |||| ACUGAUGUAAGAUGCAAACCUCCUGGCCCAGAGUGCC- Ncf4 mmu-miR-501* 93 117 -GUUU--AGGAACGGGCC-CACGUAA |||| |||| |||| | |||| GCAAACCUCCUGGCCCAGAGUGCC-- Ncf4 mmu-miR-615 6 26 UUCUCCCUCUGGGU--CCGAGCCU- |:||||| ||| ||| -----AGGGACCCUGUGGCAAGGAC Ncf4 mmu-miR-652 1 37 AC-GUGU---UGGGA------UCA----CCGCG-GUAA | |||| ||||| || ||||| || -GUCACAGGGACCCUGUGGCAAGGACGGGGCGCUCAG- Ncf4 mmu-miR-666 92 122 CCGA---GAGUGUCGA----CACGGGCGA- || ||| ::|| |||||: || UGCAAACCUCCUGGCCCAGAGUGCCUACUG Ncf4 mmu-miR-668 103 127 CCAUCACCCGGCU----CGGCUCA-CUGU- |||| ||| |||| ------UGGCCCAGAGUGCCUACUGGACAG Ncf4 mmu-miR-670 54 80 AAGUG---GUGUA--UGUGAGUCCCUA || |||: || :||||||| -CCAAGAACACGGAGACCUUCAGGGAG Ncf4 mmu-miR-673 1 20 GAG-GUUCCUGGUCUCGACACUC || ||:||||| |||||: GUCACAGGGACC----CUGUGGC Ncf4 mmu-miR-681 7 32 -UCGACGGACGG----UC-GCUCCGAC :| ||||: :| ||:||| GGGAC-CCUGUGGCAAGGACGGGGCG- Ncf4 mmu-miR-683 20 44 CUCCUGUGUCGAAUGUCGU--CC- |||||: :|| ||||| || AAGGACGGGGCGCUCAGCAAAGGG Ncf4 mmu-miR-689 7 33 -CCUGGGGCGGC---UC-GCCCCUGC- ||||||:|: | :| ||||| || GGGACCCUGUGGCAAGGACGGGG-CGC Ncf4 mmu-miR-692 25 45 CUCACUCCGCGAGU---UUCUCUA |:|||||||| |||:| ---CGGGGCGCUCAGCAAAGGGC- Ncf4 mmu-miR-705 30 58 ACGGGU---------GGGGUGGAGGGUGG ||:|| |:::||||:||| CGCUCAGCAAAGGGCCUUUACCUUCCAA- Ncf4 mmu-miR-715 2 31 -GUGCGCCCC----CACA---CGUGCCUC- ||| ||| ||| | ||||:| UCACA-GGGACCCUGUGGCAAGGACGGGGC Ncf4 mmu-miR-720 63 82 ACCUCCGG-GGUCGCUCUA |||| || :||| |||| CGGAGACCUUCAGGGAGAC Ncf4 mmu-miR-744 84 115 CGACAAUC---------GGGAUCGGGG--CGU ||| || :|||:|||| |: -AUGUAAGAUGCAAACCUCCUGGCCCAGAGUG Ncf4 mmu-miR-761 1 21 ACACAGUCAAAGUGGGACGACG- |||| ||||||: || ---GUCACAGGGACCCUGUGGCA Ncf4 mmu-miR-762 99 119 CGAGACAGGGCCGGGGU---CGGGG |||:||||| |||: -----CUCCUGGCCCAGAGUGCCUA Ncf4 mmu-miR-764-3p 23 50 -UGUCAA-CGG--UGAUA-CCGGAGGA ||:| ||: :| |||||:: GACGGGGCGCUCAGCAAAGGGCCUUUA Ncf4 mmu-miR-770-3p 98 121 GGUCGAGGUGCA-GUC---CGGGUGC |||| | ||| |||:|| ---CCUCCUGGCCCAGAGUGCCUACU Ncf4 mmu-miR-801 24 41 CAGCUAAGGCGUGCGUGUCGUUAG | | :||| |||||| ------ACGGGGCGCUCAGCAAA- Ncf4 mmu-miR-326 106 113 UGACCUCCUUC------------------------CCGGGUCUCC |||:|| ||||||||| UUC--AGGGAGACUGAUGUAAGAUGCAAACCUCCUGGCCCAGAGU Ncf4 mmu-miR-470 53 60 ---------------AGUGGUCA--CGGUC-----AGGUUCUU ||| || ||| |||||||| GCAAGGACGGGGCGCUCAGCAAAGGGCCUUUACCUUCCAAGAAC Ncf4 mmu-miR-665 99 106 AUUCC-CUGGA-GUC----------------------GGAGGACCA || ||||| ||| |||||||| ---GGAGACCUUCAGGGAGACUGAUGUAAGAUGCAAACCUCCUGGC Ncf4 mmu-miR-670 72 79 ---------AAGUGG----------UGUA--UGUGAGUCCCUA ||:||| ||: || :||||||| CAAAGGGCCUUUACCUUCCAAGAACACGGAGACCUUCAGGGAG Ncf4 mmu-miR-122a 123 152 UGU-UUGUGGUAA--CAG----UGUGAGGU ||| :|: |:||| ||: ||||||:| ACAGGATTCTATTAAGTTTTTGACACTCTA Ncf4 mmu-miR-124a 28 48 CCGUAAGUGGCG---CACGGAAu |||: ||| || | ||||| GGCGCTCA--GCAAAGGGCCTTt Ncf4 mmu-miR-125a 1 10 guguccaauuuccCAGAGUCCCU ||| |||||| -------------GTCACAGGGA Ncf4 mmu-miR-125b 16 39 AGUGUUCAAUCCC--AGAGUCccu | :|||| ||| ||||| TGGCAAGGACGGGGCGCTCAGcaa Ncf4 mmu-miR-129-3p 25 46 uacgaaaaaccccaUUCCCGaa |||||| cggggcgctcagcaAAGGGCct Ncf4 mmu-miR-140* 1 20 aggcaccaagaUGGGACACCau ||||||||| --gtcacagggACCCTGTGGca Ncf4 mmu-miR-149 8 37 CCU----CAC---UUCUGUGCCUCG-GUCu ||| ||| |:|||: || || ||| GGACCCTGTGGCAAGGACGGGGCGCTCAGc Ncf4 mmu-miR-17-3p 106 127 auGU-UCACGGGAGUGAC--GUCa || |||||| :|||| ||| ccCAGAGTGCC--TACTGGACAGg Ncf4 mmu-miR-193 5 24 GACCCUGAAACAUCCGGUCaa | ||||| ||| ||| || CAGGGACCCTGT-GGCAAGga Ncf4 mmu-miR-201 57 88 UCUUGUUAC---GGAA-------UGACU-CAU |||||| | |||| ||||| ||| AGAACACGGAGACCTTCAGGGAGACTGATGTA Ncf4 mmu-miR-204 15 45 guCCGUAUCCUAC---------UGUUUCCCuu |||| |||| | :||||||| gtGGCA-AGGACGGGGCGCTCAGCAAAGGGcc Ncf4 mmu-miR-211 16 45 uCCGUU----UCCUAC----UGUUUCCCuu ||||| :||: | :||||||| tGGCAAGGACGGGGCGCTCAGCAAAGGGcc Ncf4 mmu-miR-212 67 86 CCGGCACUGACCUCUGACAAu | || | | |||||||| | GACCTTCA-GGGAGACTGATg Ncf4 mmu-miR-214 99 122 GACGGACAG----ACACGGACGACa || |||| | |||||| ||| CT-CCTGGCCCAGAGTGCCTACTGg Ncf4 mmu-miR-25 76 98 agUCUGGCUCUGUUC-ACGUUac ||||:|| ::||| ||||| ggAGACTGATGTAAGATGCAAac Ncf4 mmu-miR-293 2 22 uGUGAUGUUUGAGACGCCGUga ||| | ::|| |||:|||| tCAC-AGGGACCCTGTGGCAag Ncf4 mmu-miR-296 4 33 UGUCCU---AACUC----CC--CCCCGGGA |||||: || | || ||||| || ACAGGGACCCTGTGGCAAGGACGGGGCGCT Ncf4 mmu-miR-325 101 123 ugugaauGACUCGUGGAUGAUCc | |||::||||||:| cctggccCAGAGTGCCTACTGGa Ncf4 mmu-miR-326 93 113 ugaccuccuucCCGGGUCUCc ||||||||| gcaaacctcctGGCCCAGAGt Ncf4 mmu-miR-328 20 47 UGCCUUCCC-----GUC-UCUCCCGGuc | ||| ||| ||| | |||||| AAGGACGGGGCGCTCAGCAAAGGGCCtt Ncf4 mmu-miR-345 18 38 CGUGACCUGAUCC-CCAGUCGU ||| |||| :|| | |||||| GCA-AGGACGGGGCGCTCAGCA Ncf4 mmu-miR-346 1 26 ucuccGUCCGUGAG-C-CCGU--CUGu |||| || | | |||| ||| -gtcaCAGGGACCCTGTGGCAAGGACg Ncf4 mmu-miR-351 55 78 GUCCGAGUUUCCCGAGGAGUCCCU || | || :| | |:||||||| CAAGAACACGGAGACCTTCAGGGA Ncf4 mmu-miR-351 15 39 guCCGAGUUU--CCCGAGGAGUCccu ||| ::| |||| ||||| gtGGCAAGGACGGGGC-GCTCAGcaa Ncf4 mmu-miR-362 1 26 aAGUGU-----GGAUCCAAGGUUCCUaa ||||| ||| || |||||| gTCACAGGGACCCT--GTGGCAAGGAcg Ncf4 mmu-miR-370 23 43 uUGGUCCAAGGUGGGGUCG--UCCg || :|| |: |:|||| ||| gACGGGG---CG-CTCAGCAAAGGg Ncf4 mmu-miR-378 60 78 UGUGUC-CUGGACCUCAGUCCuc ||||:| ||||| ||||| ACACGGAGACCT----TCAGGga Ncf4 mmu-miR-431 2 26 ggacguaCUGCCGGA---CGUU-CUGu ||| ||| |||| ||| tcacaggGAC--CCTGTGGCAAGGACg Ncf4 mmu-miR-469 64 95 CCUGUGG------UUCUAGUUACUUUCUCCGU ||| ||| :||| ::||| |||| ||| GGAGACCTTCAGGGAGACTGATGTAAGATGCA Ncf4 mmu-miR-470 33 60 AGUGG--UCACGG---U--CAGGUUCUU ||| | || ||| | |||||||| TCAGCAAAGGGCCTTTACCTTCCAAGAA Ncf4 mmu-miR-484 23 48 uaGCCCUCC----CCUGACUCGGAcu ||||: | | | |:|||| gaCGGGGCGCTCAGCAAAGGGCCTtt Ncf4 mmu-miR-486 23 43 gaGCCCCGUCGAGUCAUGUCCu |||||| |||||| | ||| gaCGGGGC-GCTCAGCAAAGGg Ncf4 mmu-miR-490 58 79 gUCGUACCUCAGGAGGUCCaac | || |||| |||:|||| gAACACGGAGACCTTCAGGgag Ncf4 mmu-miR-491 98 120 GGAGUACC--UUCCCAAGGGGUGA |||| ||| || | | ||:||| CCTCCTGGCCCAGAG-TGCCTACT Ncf4 mmu-miR-500 93 117 gacUUG--GGAACGGGUC-CACGua ||| ||| |||||| |||| gcaAACCTCCTGGCCCAGAGTGCct Ncf4 mmu-miR-501* 94 118 GUUU--AGGAACGGGCC-CACGUAa |||| |||| |||| | |||| | CAAACCTCCTGGCCCAGAGTGCCTa Ncf4 mmu-miR-615 3 24 uUCUCCCUCUGGG--UCCGAGCCU | ||| ||||| ||| ||| cACAGG--GACCCTGTGGCAAGGA Ncf4 mmu-miR-652 1 37 acGUGU---UGGGAU----------CACCGCG-GUaa |||| |||||: | ||||| || gtCACAGGGACCCTGTGGCAAGGACGGGGCGCTCAgc Ncf4 mmu-miR-665 87 106 AUUCCCUGGAGUCGGAGGACCa |||| :| | |||||||| TAAGATGC--AAACCTCCTGGc Ncf4 mmu-miR-666 100 120 ccGAGAGUGUCGACACGGGCGA || | ||| |||||: || tcCTGGCCCAG-AGTGCCTACT Ncf4 mmu-miR-668 92 117 ccaucacccGGCUCGG--CUCACUGu || :||| ||||| | tgcaaacctCCTGGCCCAGAGTGCCt Ncf4 mmu-miR-670 56 79 aagUGGUG--UAUGUGAGUCCCUa | ||| | || :||||||| aagAACACGGAGACCTTCAGGGAg Ncf4 mmu-miR-681 11 32 ucGACGGACGGUC--GCUCCGac ||| : || || ||:||| ccCTG-TGGCAAGGACGGGGCgc Ncf4 mmu-miR-689 8 32 CCUGGGGCG--GCUC--GCCCCugc ||||||:|: | || ||||| GGACCCTGTGGCAAGGACGGGGcgc Ncf4 mmu-miR-692 22 45 cucaCUCCGCGA---GUUUCUCua |:|||||| |||||:| ggacGGGGCGCTCAGCAAAGGGcc Ncf4 mmu-miR-705 30 58 aCGGGUGG------GG---UGGAGGGUgg ||:|| | || ||||:||| cGCTCAGCAAAGGGCCTTTACCTTCCAag Ncf4 mmu-miR-715 1 25 guGCGCCCC-----CACACGUGCCUc | | ||| ||| ||| ||| gtCACAGGGACCCTGTG-GCAAGGAc Ncf4 mmu-miR-744 90 112 CGACAAUCG--GGAUCGGGGCgu | || | | |||:|||| | GATGCAAACCTCCTGGCCCAGag Ncf4 mmu-miR-762 90 109 cgagacagGGCCGGGGUCGGGg || :||::|||| gatgcaaaCC--TCCTGGCCCa Ncf4 mmu-miR-764-3p 24 52 UGUCAACGGUGA------UACCGGA---GGA ||:| | |:|| | ||||| ||| ACGG--GGCGCTCAGCAAAGGGCCTTTACCT Ncf4 mmu-miR-770-3p 87 111 ggUCGAGG--UGCA-GUCCGGGUgc || | | || | | |||||| taAGATGCAAACCTCCTGGCCCAga Ncf4 mmu-miR-801 18 41 cagcuaaGGCGUGCGUGUCGUUag | | :||| |||||| gcaaggaCGGGGCGCTCAGCAAag

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ncf4 RAID00058832 mmu-miR-326-3p miRNA MIMAT0000559 Ncf4 mRNA 17972 Prediction 0.1828 Ncf4 RAID01284314 mmu-miR-7660-5p miRNA MIMAT0029826 Ncf4 mRNA 17972 Prediction 0.1828 Ncf4 RAID02177930 mmu-miR-470-5p miRNA MIMAT0002111 Ncf4 mRNA 17972 Prediction 0.1828 Ncf4 RAID02411252 mmu-miR-330-5p miRNA MIMAT0004642 Ncf4 mRNA 17972 Prediction 0.1828 Ncf4 RAID03733785 mmu-miR-7042-5p miRNA MIMAT0027988 Ncf4 mRNA 17972 Prediction 0.1828