DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Trim40; Gm319 ATTTA 579-1319 2109-2113 Trim40; Gm319 WWATTTAWW 579-1319 2107-2115

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 195359 Trim40 cguuccgucacCGGACAUGUCa |::||||||| uagaaccuccuGUUUGUACAGc 2 12 272 293 [mm9:17:37019048-37019069:-] 0.5239 147 7 -13.39 -0.2779 MIMAT0000129 mmu-miR-30a* 195359 Trim40 cgaCGUUUGU--AGGC---UGACUUUc |:|:|:| ||:| ||||||| gaaGUAGAUACUUCUGGGAACUGAAAa 2 20 653 679 [mm9:17:37018662-37018688:-] 0.5140 149 7 -14.74 -0.5225 MIMAT0004526 mmu-miR-101a* 195359 Trim40 cguAGUCGUGA-CACUAUUGACu |||| || ||||||| auuUCAGAUCUCCAUAUAACUGu 2 20 120 142 [mm9:17:37019199-37019221:-] 0.5438 146 7 -11.90 -0.6091 MIMAT0004529 mmu-miR-125b* 195359 Trim40 ucCAGGGUUCUUGGACUGAACa || ||| |: ||||||| gaGUGCCAUCAG--UGACUUGc 2 21 397 416 [mm9:17:37018925-37018944:-] 0.5235 149 7 -15.57 -0.2500 MIMAT0000137 mmu-miR-126-5p 195359 Trim40 gcgcaugguuuucAUUAUUac |||||| guaucuguuuuuaUAAUAAac 3 9 760 780 [mm9:17:37018561-37018581:-] 0.5441 120 0 -4.07 -0.1246 MIMAT0004531 mmu-miR-135a* 195359 Trim40 gcggugccgagguuAGGGAUAu ||||||| uuuuauaauaaacuUCCCUAUu 2 9 768 789 [mm9:17:37018552-37018573:-] 0.5441 140 7 -11.24 -1.0183 MIMAT0004535 mmu-miR-150* 195359 Trim40 gauaGGGGGUCCGGACA-UGGUc |:|||| |||| |||| guggCUCCCACUGCUGUGACCAg 2 19 95 117 [mm9:17:37019224-37019246:-] 0.5446 126 0 -24.89 -0.4418 MIMAT0000249 mmu-miR-30e* 195359 Trim40 cgaCAUUUGU--AGGC---UGACUUUc |||:|:| ||:| ||||||| gaaGUAGAUACUUCUGGGAACUGAAAa 2 20 653 679 [mm9:17:37018662-37018688:-] 0.5140 153 7 -15.25 -0.5225 MIMAT0000377 mmu-miR-299* 195359 Trim40 uacauacacccUGCCAUUUGGu :| ||||||| gcuuuacaguuGCAGUAAACCc 2 12 608 629 [mm9:17:37018712-37018733:-] 0.5288 143 7 -7.72 -0.3490 MIMAT0000377 mmu-miR-299* 195359 Trim40 uacauacacccugccAUUUGGu |||||| aacuucccuauuauuUAAACC- 2 8 778 798 [mm9:17:37018543-37018563:-] 0.5441 120 6 -3.46 -0.1816 MIMAT0004583 mmu-miR-130b* 195359 Trim40 ucaucacGUUGUCC--CUUUCUCa || | || ||||||| aucgaaaCAUCUGGAUGAAAGAGc 2 16 182 205 [mm9:17:37019136-37019159:-] 0.5239 146 7 -12.22 -0.2907 MIMAT0004622 mmu-let-7c-1* 195359 Trim40 ccuuucgaucuuCCAACAUGUc | ||||||| auagaaccuccuGUUUGUACAg 2 11 271 292 [mm9:17:37019049-37019070:-] 0.5239 142 7 -12.32 -0.1835 MIMAT0004629 mmu-miR-22* 195359 Trim40 auuucgaACGGUGACU-UCUUGa || | |||| ||||| gcucuucUGACUCUGAUAGAACc 2 16 256 278 [mm9:17:37019063-37019085:-] 0.5239 123 0 -12.35 -0.2237 MIMAT0000549 mmu-miR-322* 195359 Trim40 cacaacgucgcGAAGUACAAa | ||||||| acaguccucacCCUCAUGUUc 2 11 346 366 [mm9:17:37018975-37018995:-] 0.5239 142 7 -11.49 -0.1723 MIMAT0004656 mmu-miR-345-3p 195359 Trim40 cagAGGUCUGGGGAU-CAAGUCc ||| ||||: | |||||| cagUCCUCACCCUCAUGUUCAGg 2 20 347 369 [mm9:17:37018972-37018994:-] 0.5239 131 6 -25.36 -0.2539 MIMAT0000672 mmu-miR-199b* 195359 Trim40 cuUGUCCAUCAGAUUUGU-GACCc :::|| | || ||||| |||| ucGUGGGCA-UCGAAACAUCUGGa 2 22 174 196 [mm9:17:37019145-37019167:-] 0.5339 127 0 -14.23 -0.5313 MIMAT0005460 mmu-miR-1224 195359 Trim40 gaggUGGAGGGGUCAGGAGUg |::||| ||||||||| ggugAUUUCCACAGUCCUCAc 2 18 336 356 [mm9:17:37018985-37019005:-] 0.5239 169 7 -28.28 -0.2707 MIMAT0003736 mmu-miR-670 195359 Trim40 aaguggUGUAUGUGAGUCCCUa ||| | | ||||||| ugggugACA-AGAAUCAGGGAa 2 17 582 602 [mm9:17:37018739-37018759:-] 0.5230 150 7 -14.19 -0.6119 MIMAT0003895 mmu-miR-764-3p 195359 Trim40 ugUCAACGG-UGAUACCGGAGGa |||| || | : ||||||| cuAGUUUCCUAGAGCGGCCUCCa 2 21 554 576 [mm9:17:37018765-37018787:-] 0.5230 155 7 -20.77 -0.1978 MIMAT0003739 mmu-miR-673-5p 195359 Trim40 gagguuccuGGUCUCGACACUc ||| ||||||| uuguggcucCCACUGCUGUGAc 2 14 93 114 [mm9:17:37019227-37019248:-] 0.5446 149 7 -16.06 -0.2775 MIMAT0003455 mmu-miR-679 195359 Trim40 ugGUUCUCAGUGGA-GUGUCAGg ::||:|| |::| ||||||| cuUGAGGGUGAUUUCCACAGUCc 2 21 330 352 [mm9:17:37018989-37019011:-] 0.5239 163 7 -25.79 -0.2553 MIMAT0003455 mmu-miR-679 195359 Trim40 ugguucucAGU-GGAGUGUC-AGg ||| |||||||| || guauauucUCAUCCUCACAGCUCc 2 15 9 32 [mm9:17:37019309-37019332:-] 0.5407 125 0 -21.33 -0.5490 MIMAT0003469 mmu-miR-690 195359 Trim40 aaaCCAA--CACUCG-GAUCG-GAAa |||| ||:|: ||||| ||| gcaGGUUUAUUGGGUACUAGCUCUUc 2 20 237 262 [mm9:17:37019079-37019104:-] 0.5239 121 0 -18.49 -0.4545 MIMAT0003472 mmu-miR-693-5p 195359 Trim40 cuUUUGAAAGCCUACACCGAc |:|||| | ||||||| ccAGACUUGAGCUUGUGGCUc 2 20 81 101 [mm9:17:37019240-37019260:-] 0.5455 159 7 -17.64 -0.2140 MIMAT0003500 mmu-miR-710 195359 Trim40 gagUUGA-GAGGGGU----UCUGAACc | || ||:||:| ||||||| auaAUCUCCUUCCUAAGCCAGACUUGa 2 20 64 90 [mm9:17:37019251-37019277:-] 0.5455 149 7 -18.83 -0.2894 MIMAT0003500 mmu-miR-710 195359 Trim40 gaGUUGA-GAGGGGU-UCUGAACc ::||| :| | :: ||||||| uaUGACUGUUGCAUGCAGACUUGa 2 21 311 334 [mm9:17:37019007-37019030:-] 0.5239 146 7 -13.64 -0.2049 MIMAT0004843 mmu-miR-879* 195359 Trim40 ggcUUUCGAACUUCGGUAUUCg | ||:|| ||||||| cccAUAGUUU----CCAUAAGg 2 20 706 723 [mm9:17:37018618-37018635:-] 0.5145 142 7 -12.88 -0.5297 MIMAT0004844 mmu-miR-880 195359 Trim40 agauGAGUCUCUCCUACCUCAu ||| || ||||||| ccacCUC--AGCUUAUGGAGUu 2 19 215 234 [mm9:17:37019107-37019126:-] 0.5239 143 7 -16.58 -0.3973 MIMAT0004888 mmu-miR-493 195359 Trim40 ggacCGUGUGUCAUCCUGG-AAGu || |||| | |||| ||| uacaGCCCACACU--GACCAUUCa 2 20 288 309 [mm9:17:37019032-37019053:-] 0.5239 120 0 -16.48 -0.8051 MIMAT0004893 mmu-miR-574-5p 195359 Trim40 ugUGUGAGUGUGUGUGUGU-GAGu |:|:|| ||: | |||| ||| guAUAUUCUCAUCCUCACAGCUCc 2 22 9 32 [mm9:17:37019309-37019332:-] 0.5407 133 0 -18.10 -0.5383 MIMAT0004898 mmu-miR-654-3p 195359 Trim40 uuccACUACCAGUCGUCUGUAu || | || | ||||||| ccacUGCU-GUGACCAGACAUu 2 19 102 122 [mm9:17:37019219-37019239:-] 0.5438 152 7 -11.35 -0.3054 MIMAT0007874 mmu-miR-1904 195359 Trim40 ggAGGGAGGUCUCC-----UCGUCUUg ||:| ::| ||| ||||||| cuUCUCAUUAAAGGAAUAUAGCAGAAg 2 21 416 442 [mm9:17:37018899-37018925:-] 0.5230 147 7 -19.20 -0.7819 MIMAT0009392 mmu-miR-1929 195359 Trim40 gaGACGAGAUAUUUCAGGAUCUu | |||| ||: ||||||| ggCAGCUC-CUAGUUUCCUAGAg 2 22 546 567 [mm9:17:37018774-37018795:-] 0.5230 155 7 -18.55 -0.1108 MIMAT0009402 mmu-miR-1938 195359 Trim40 cugGCUUGAUGU-UCAGG-GUGGc :|| :| || ||||| |||| gggUGAUUUCCACAGUCCUCACCc 2 20 335 358 [mm9:17:37018983-37019006:-] 0.5239 126 0 -19.46 -0.6102 MIMAT0009404 mmu-miR-1940 195359 Trim40 uuGACGAGGUGGAAGAGUCAGGAG-GUa ||| | |: |||||| ||||| || ucCUGGU--AUAUUCUCA-UCCUCACAg 2 26 4 28 [mm9:17:37019313-37019337:-] 0.5407 132 0 -20.49 -0.1897 MIMAT0009407 mmu-miR-1942 195359 Trim40 guuggucUACUUCUGUAGACu || :| ||||||| cgugggcAUCGAAACAUCUGg 2 15 175 195 [mm9:17:37019146-37019166:-] 0.5339 150 7 -12.88 -0.2593 MIMAT0009408 mmu-miR-1943 195359 Trim40 agguccacgggucUAGGAGGGAa | |:||||| uguuuuuauaauaAACUUCCCUa 2 11 765 787 [mm9:17:37018554-37018576:-] 0.5441 126 0 -15.91 -0.2141 MIMAT0009416 mmu-miR-1949 195359 Trim40 uugauacgacuGUAGGACCAUAUc | |||||||||| ----------uCUUCCUGGUAUAu 2 14 1 14 [mm9:17:37019327-37019340:-] 0.5359 157 7 -14.68 -0.1410 MIMAT0009426 mmu-miR-1955 195359 Trim40 uuuUCGACGUCACGUAGGACCCUGa |||| | || | ||||||| ucuAGCUUC--UG-ACGCUGGGACa 2 23 43 64 [mm9:17:37019277-37019298:-] 0.5455 149 7 -17.11 -0.4055 MIMAT0009445 mmu-miR-1274a 195359 Trim40 acCGC-GGACUU-GUCCC-UGGACu |:| | ||| ||||| ||||| ggGUGACAAGAAUCAGGGAACCUGg 2 21 583 607 [mm9:17:37018734-37018758:-] 0.5230 126 0 -29.70 -0.1129 MIMAT0009459 mmu-miR-1982* 195359 Trim40 ggAGGGGUCCUGGGA-GGGUu || || | |||| |||| aaUCACCCUGUCCCUGCCCAu 2 19 690 710 [mm9:17:37018631-37018651:-] 0.4935 122 0 -21.80 -0.3604 MIMAT0011214 mmu-miR-2138 195359 Trim40 uaaggcgguucgggcAAGGGAa |||||| guuuuuauaauaaacUUCCCUa 2 8 766 787 [mm9:17:37018554-37018575:-] 0.5441 120 6 -7.98 -0.6828 MIMAT0015641 mmu-miR-3470b 195359 Trim40 ggucggaccagaUGUCUCACu :||||||| cuggaugaaagaGCAGAGUGa 2 10 192 212 [mm9:17:37019129-37019149:-] 0.5239 141 7 -16.84 -0.4013 MIMAT0000144 mmu-miR-132 195359 Trim40 gcUGGUACCGACAU-CUGACAAu ||||| | || ||||||| ugACCAU-UCAUUAUGACUGUUg 2 21 300 321 [mm9:17:37019020-37019041:-] 0.5239 153 7 -20.72 -0.6140 MIMAT0000156 mmu-miR-144 195359 Trim40 ucauGU-AGUAGAUA-UGACAu || |||| ||| ||||| ugacCAUUCAU-UAUGACUGUu 2 17 300 320 [mm9:17:37019021-37019041:-] 0.5239 121 0 -10.17 -0.3322 MIMAT0000212 mmu-miR-183 195359 Trim40 ucacuuaagaUGGUCACGGUAu |: |||||||| ccucuggagaAUGAGUGCCAUc 2 13 385 406 [mm9:17:37018935-37018956:-] 0.5239 148 7 -15.19 -0.6004 MIMAT0000212 mmu-miR-183 195359 Trim40 ucACUU-AAGAU--GGUCA-CGGUAu |||| || | |:||| ||||| aaUGAAGGUCAACUCUAGUGGCCAUa 2 21 444 469 [mm9:17:37018872-37018897:-] 0.5230 122 0 -18.18 -0.6139 MIMAT0000236 mmu-miR-203 195359 Trim40 gaucAC-CAGGAUUUGUAAAGUg || | || |:|||||||| cugcUGUGACC-AGACAUUUCAg 2 19 105 126 [mm9:17:37019215-37019236:-] 0.5438 155 7 -18.04 -0.5075 MIMAT0000238 mmu-miR-205 195359 Trim40 gucugaGGCCACCUUACUUCCu | | | |||||||| auauagCAGAAGUAAUGAAGGu 2 17 431 452 [mm9:17:37018889-37018910:-] 0.5230 148 7 -14.70 -0.5514 MIMAT0000246 mmu-miR-122 195359 Trim40 guuuguGGUAACAGUGU-GAGGu :||| ||||| |||| auauucUCAUCCUCACAGCUCCc 2 17 11 33 [mm9:17:37019308-37019330:-] 0.5407 124 0 -14.85 -0.6664 MIMAT0004651 mmu-miR-340-5p 195359 Trim40 uuAGUCAGAGUAACGAAAUAUu || || || | :|||||| cuUCUGUAUC-UGUUUUUAUAa 2 21 755 775 [mm9:17:37018566-37018586:-] 0.5441 138 6 -6.98 -0.1975 MIMAT0000653 mmu-miR-28 195359 Trim40 gagUUAUCU-GACAC---UCGAGGAa :| ||| :|||| ||||||| gggGAAAGAUUUGUGGGCAGCUCCUa 2 20 531 556 [mm9:17:37018785-37018810:-] 0.5230 153 7 -18.40 -0.3403 MIMAT0000659 mmu-miR-212 195359 Trim40 accggcacugaccuCUGACAAu ||||||| ugaccauucauuauGACUGUUg 2 9 300 321 [mm9:17:37019020-37019041:-] 0.5239 140 7 -12.76 -0.6104 MIMAT0000662 mmu-miR-216a 195359 Trim40 agUGUCAACGGUCGACU-CUAAu |:| ||: ||||| |||| auAUAACUGUGUGCUGAUGAUUg 2 21 133 155 [mm9:17:37019186-37019208:-] 0.5438 124 0 -15.84 -0.2547 MIMAT0000671 mmu-miR-224 195359 Trim40 uugcCUUGGUGAUCACUGAAu | :|||: |||||||| augaGUGCCAUCAGUGACUUg 2 18 395 415 [mm9:17:37018926-37018946:-] 0.5239 161 7 -20.98 -0.3572 MIMAT0000704 mmu-miR-361 195359 Trim40 caUGGGGACCUCUAAGACUAUu | |:|| || ||||||| cuAGCUCUUCUGACUCUGAUAg 2 21 253 274 [mm9:17:37019067-37019088:-] 0.5239 156 7 -16.53 -0.1423 MIMAT0001420 mmu-miR-433 195359 Trim40 uguggcUCCUCG-GGUAGU-ACUa | |||: |||||| ||| uggagaAUGAGUGCCAUCAGUGAc 2 17 389 412 [mm9:17:37018929-37018952:-] 0.5239 123 0 -17.00 -0.3321 MIMAT0004828 mmu-miR-708 195359 Trim40 gggucgaUCU-AACAU---UCGAGGAa ||| ||||: ||||||| aggggaaAGAUUUGUGGGCAGCUCCUa 2 17 530 556 [mm9:17:37018785-37018811:-] 0.5230 150 7 -17.74 -0.3375

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G069883 Trim40 Mus musculus 195359

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Trim40 mmu-miR-710 beg:71 end:90 pic:3' GAGTTGAGAGGGGT----TCTGAACC 5'& ||.||.| ||||||| &5' -------CTTCCTAAGCCAGACTTG- 3' Trim40 mmu-miR-654-3p beg:107 end:122 pic:3' TTCCACTACCAGTCGTCTGTAT 5'& || | ||||||| &5' ---------GTGACCAGACAT- 3' Trim40 mmu-miR-3470b beg:201 end:213 pic:3' GGTCGGACCAGATGTCTCACT 5'& .|||||||| &5' ------------GCAGAGTGA 3' Trim40 mmu-miR-203 beg:107 end:126 pic:3' GATCACCAGGATTTGTAAAGTG 5'& ||| || |.|||||||| &5' ---GTGA-CC-AGACATTTCA- 3' Trim40 mmu-miR-299star beg:613 end:629 pic:3' TACATACACCCTGCCATTTGGT 5'& | .| ||||||| &5' --------GTTGCAGTAAACC- 3' Trim40 mcmv-miR-m21-1 beg:369 end:391 pic:3' GCCGAAC-TTGC-ACAGGGGATA 5'& |||| ||| |||||.||. &5' ---CTTGTAACTTTGTCCTCTG- 3' Trim40 mcmv-miR-M23-2 beg:667 end:688 pic:3' GGCGAAC-TGGCTC---CGGGGGTA 5'& | ||.|| ||||||| &5' ------GAACTGAAAATGCCCCCA- 3' Trim40 mcmv-miR-m59-1 beg:91 end:111 pic:3' GACTGCCAGCTCCG----TGACGATT 5'& |.| ||| ||||||. &5' -------TTGTGGCTCCCACTGCTG- 3' Trim40 mghv-miR-M1-5 beg:442 end:460 pic:3' CTCTGCTGGGCTAGAGTTGAGA 5'& |.|| |. |||||||| &5' ---ATGAA--GG--TCAACTCT 3' Trim40 mghv-miR-M1-5 beg:204 end:227 pic:3' CTCTGCT-GGGCTAGAGTTGAGA 5'& ||| .|| ||| ||||.||. &5' GAG-TGAGCCCAC-CTCAGCTT- 3' Trim40 mghv-miR-M1-6 beg:700 end:717 pic:3' TTTTGGTGGAGTGTGTCAAAGT 5'& | || ||.|||||| &5' ----CTGCC---CATAGTTTC- 3' Trim40 mghv-miR-M1-7-5p beg:564 end:580 pic:3' TCCAATGGCG-TGGAGGTGGAAA 5'& || .||||||.||| &5' --------GCGGCCTCCATCTT- 3' Trim40 mghv-miR-M1-8 beg:382 end:403 pic:3' CTGGTTTGGGGGTC----ACTCACGA 5'& ||.| | ||||||| &5' -------CCTCTGGAGAATGAGTGC- 3' Trim40 mmu-miR-1 beg:103 end:126 pic:3' TATGTATGAAGAAA---TGTAAGGT 5'& || |.|| |||||.|| &5' --AC-TGCTGTGACCAGACATTTCA 3' Trim40 mmu-miR-1224 beg:335 end:357 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& . |..||| |||||||||| &5' --TGATTTCCACAGTCCTCAC 3' Trim40 mmu-miR-125a-5p beg:580 end:602 pic:3' AGTGTCCAAT-TTCCCAGAGTCCCT 5'& .||| ||| ||||||| &5' ----GGGTGACAAGAA--TCAGGGA 3' Trim40 mmu-miR-125b-5p beg:585 end:602 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& ||||| ||||||| &5' --ACAAGAA------TCAGGGA 3' Trim40 mmu-miR-125bstar beg:396 end:416 pic:3' TCCAGGGTTCTTGG-ACTGAACA 5'& || ||| | ||||||| &5' --GTGCCAT---CAGTGACTTG- 3' Trim40 mmu-miR-1274a beg:72 end:91 pic:3' ACCGCGGACTTGTCCCTGGACT 5'& ||| |.| |||.||| &5' -----CCTAAGCCA-GACTTGA 3' Trim40 mmu-miR-1274a beg:315 end:335 pic:3' ACCGCGGACTTGTCCCTGGACT 5'& | .|| .|| |||.||| &5' -GTTGCAT--GCA--GACTTGA 3' Trim40 mmu-miR-132 beg:298 end:322 pic:3' GCTGGTACCGACATCTGACAAT 5'& |||||| |||||||. &5' -GACCATTCATTATGACTGTTG 3' Trim40 mmu-miR-133a beg:104 end:119 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& |||| |||||.| &5' --GCTGT--------GACCAGA 3' Trim40 mmu-miR-133b beg:104 end:119 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& |||| |||||.| &5' --GCTGT--------GACCAGA 3' Trim40 mmu-miR-138star beg:447 end:467 pic:3' GGGACCACAACACTTCATCGGC 5'& ||| |||.||| &5' ----GGTCAACTCTAGTGGCC- 3' Trim40 mmu-miR-183 beg:386 end:406 pic:3' TCACTTAAGATGGTCACGGTAT 5'& ||.| |. |||||||| &5' --TGGAGA--ATGAGTGCCAT- 3' Trim40 mmu-miR-1904 beg:188 end:209 pic:3' GGAGGGAGGTCTC----CTCGTCTTG 5'& || || |||||||. &5' ------TCTGGATGAAAGAGCAGAG- 3' Trim40 mmu-miR-1929 beg:547 end:568 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |||| ||. |||||||. &5' ----GCTCC-TAGTTTCCTAGAG 3' Trim40 mmu-miR-1933-5p beg:298 end:318 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& |||| ||..|||||| &5' -------GACCATTCATTATGACT 3' Trim40 mmu-miR-1934 beg:104 end:119 pic:3' TCTCCTGCTTCGTCCCCTGGTCT 5'& || | ||||||| &5' ----------GCT-GTGACCAGA 3' Trim40 mmu-miR-1942 beg:23 end:40 pic:3' GTTGGTCTACTTCTGTAGACT 5'& ||| ||||||| &5' ----CAGCTCC---CATCTGA 3' Trim40 mmu-miR-1949 beg:1 end:14 pic:3' TTGATACGACTGTAGGACCATATC 5'& |||||||||| &5' -------------TCCTGGTATA- 3' Trim40 mmu-miR-1950 beg:310 end:330 pic:3' ACTGGTATAGGAATCTACGTCT 5'& ||||..| |. ||||||| &5' TGACTGT-----TGCATGCAGA 3' Trim40 mmu-miR-1967 beg:338 end:356 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& | ||| .|||||| &5' --------TTTCCACAGTCCTCA 3' Trim40 mmu-miR-1969 beg:558 end:580 pic:3' TGGGTACAATTTCAGAGGTAGAA 5'& ||.| .| ||||||||| &5' -CCTAGAGC--GGCCTCCATCTT 3' Trim40 mmu-miR-199a-3p beg:91 end:112 pic:3' ATTGGTTACACGTC--TGATGACA 5'& |. .|| || |||.|||| &5' ---CTTGTG-GCTCCCACTGCTGT 3' Trim40 mmu-miR-199a-5p beg:47 end:62 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& |||| ||.||||| &5' ----------TCTG-ACGCTGGG 3' Trim40 mmu-miR-199b beg:91 end:112 pic:3' ATTGGTTACACGTC--TGATGACA 5'& |. .|| || |||.|||| &5' ---CTTGTG-GCTCCCACTGCTGT 3' Trim40 mmu-miR-2135 beg:118 end:132 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& . | |||.||| &5' -------TTTC-AGATCTC- 3' Trim40 mmu-miR-2145 beg:687 end:707 pic:3' TTGGTCCGGGCTGGGACGA 5'& ||.|| ||.| |||||| &5' AATCAC-CCTGTCCCTGC- 3' Trim40 mmu-miR-221 beg:425 end:451 pic:3' CTTTGGGTCGTCT--GTTACATCGA 5'& |.||. .|||||| .|||| || &5' GGAATATAGCAGAAGTAATGAAG-- 3' Trim40 mmu-miR-224 beg:392 end:416 pic:3' TTGC-CTTGGTGATCACTGAAT 5'& ||.| | .|||. ||||||||. &5' AATGAGTGCCATCAGTGACTTG 3' Trim40 mmu-miR-24-2star beg:167 end:184 pic:3' TGACAAAGTC-GAGTCATCCGTG 5'& .| ||| ||.||||. &5' --------GGTCTC-GTGGGCAT 3' Trim40 mmu-miR-24-2star beg:529 end:550 pic:3' TGACAAAGTCGAGTCATCCGTG 5'& | || ||.|||| &5' ---GGGAAAGATTTGTGGGCA- 3' Trim40 mmu-miR-27a beg:92 end:114 pic:3' CGCCTTGAATCGGTGACACTT 5'& |.|| | | |||||| &5' GTGGCTCCCA-CTGCTGTGA- 3' Trim40 mmu-miR-27astar beg:199 end:217 pic:3' ACGAGTGTTCGTCG-ATTCGGGA 5'& .||||| |.||||| &5' -------GAGCAGAGTGAGCCC- 3' Trim40 mmu-miR-291a-3p beg:636 end:659 pic:3' CGTGT--GTTTC-ACCTTCGTGAAA 5'& |||| .|||| ||||||.| &5' -CACAAGTAAAGTTGGAAGTA---- 3' Trim40 mmu-miR-295 beg:355 end:375 pic:3' TCTGAGTTTTCATCATCGTGAAA 5'& |||| || .|.|||| &5' ---CTCAT--GTTCAGGTACTT- 3' Trim40 mmu-miR-29astar beg:426 end:451 pic:3' GACTTGTG--GTTTTCTTTAG-TCA 5'& |||.|. ||.||| ||| || &5' --GAATATAGCAGAAGTAATGAAG- 3' Trim40 mmu-miR-29bstar beg:64 end:85 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& ||.| || ||.|||| &5' --AATCTCCTTCCTAAGCCAG- 3' Trim40 mmu-miR-30astar beg:659 end:679 pic:3' CGACGTTTGTAGGC---TGACTTTC 5'& || ||.| ||||||| &5' -------ACTTCTGGGAACTGAAA- 3' Trim40 mmu-miR-30estar beg:659 end:679 pic:3' CGACATTTGTAGGC---TGACTTTC 5'& || ||.| ||||||| &5' -------ACTTCTGGGAACTGAAA- 3' Trim40 mmu-miR-31 beg:470 end:484 pic:3' GTCGATACGGTCGTAGAACGGA 5'& ||. ||||||. &5' -------GCTT---TCTTGCT- 3' Trim40 mmu-miR-327 beg:16 end:35 pic:3' TAGGAGTA-CGGGGAGTTCA 5'& ||||||| ||.|| || &5' ATCCTCACAGCTCC-CA--- 3' Trim40 mmu-miR-327 beg:696 end:714 pic:3' TAGGAGTACGGGGAGTTCA 5'& .||| | ||||| ||| &5' GTCC-C-TGCCCAT--AGT 3' Trim40 mmu-miR-343 beg:517 end:536 pic:3' AGACCCGTGT-ACTTCCCTCT 5'& .|||| ||. |||.|||| &5' -TTGGGGACGCTGAGGGGA-- 3' Trim40 mmu-miR-34c beg:93 end:110 pic:3' CGTTAGTCGATTGAT-GTGACGGA 5'& |..|| ||||||. &5' ---------TGGCTCCCACTGCT- 3' Trim40 mmu-miR-361 beg:253 end:275 pic:3' CATGGGGACCTCTAAGACTATT 5'& .|.|.| || |||||||. &5' --GCTCTTCT-GACTCTGATAG 3' Trim40 mmu-miR-361 beg:25 end:43 pic:3' CATGGGGACCTCTAAGACTATT 5'& .|.|| ||||||.| &5' --GCTCCCA-----TCTGATGA 3' Trim40 mmu-miR-384-3p beg:653 end:673 pic:3' TAACACTTGTTAAAGATCCTTA 5'& || |.| ||||.|||| &5' ---GTAGATAC-TTCTGGGAA- 3' Trim40 mmu-miR-433 beg:293 end:316 pic:3' TGTGGCTCCTCGGGTAGTACTA 5'& ||||.|| ..|||.|||| &5' ACACTGACCA-TTCATTATGA- 3' Trim40 mmu-miR-449c beg:93 end:110 pic:3' GGTCGATCGTTACGTGACGGA 5'& |.|| ||||||. &5' -----TGGCTCC-CACTGCT- 3' Trim40 mmu-miR-540-3p beg:250 end:268 pic:3' GGTCCTAGCTGGAGACTGGA 5'& |.|| |.||||||. &5' CTAGCT----CTTCTGACT- 3' Trim40 mmu-miR-541 beg:106 end:133 pic:3' TCACACTGGT-TGT--AGTCTTAGGGAA 5'& |||||||| ||| ||||| .|| &5' --TGTGACCAGACATTTCAGATCTCC-- 3' Trim40 mmu-miR-546 beg:396 end:407 pic:3' CTGAGGCACGGTGGTA 5'& ||||||.|| &5' ------GTGCCATCA- 3' Trim40 mmu-miR-546 beg:624 end:638 pic:3' CTGAGGCACGGTGGTA 5'& || |||||| &5' ----CCCTTCCACCA- 3' Trim40 mmu-miR-599 beg:480 end:494 pic:3' CAAACTATTTGACTGTGTT 5'& ||||| |||||| &5' ---TGATA----GACACA- 3' Trim40 mmu-miR-652 beg:384 end:406 pic:3' GTGTTGGGATC----AC-CGCGGTAA 5'& |.||.| || |.||||| &5' -----CTCTGGAGAATGAGTGCCAT- 3' Trim40 mmu-miR-665 beg:0 end:11 pic:3' TCCCTGGAGTCGGAGGACCA 5'& |.||||||| &5' -----------CTTCCTGGT 3' Trim40 mmu-miR-668 beg:578 end:591 pic:3' CCATCACCCGGCTCGGCTCACTGT 5'& |.|.|||||| &5' --------------CTGGGTGACA 3' Trim40 mmu-miR-670 beg:585 end:602 pic:3' AAGTGGTGTATGTG---AGTCCCTA 5'& ||| ||||||| &5' ----------ACAAGAATCAGGGA- 3' Trim40 mmu-miR-673-5p beg:94 end:114 pic:3' GAGGTTCCT--GGTCTCGACACTC 5'& || ||| ||||||| &5' ------GGCTCCCACTGCTGTGA- 3' Trim40 mmu-miR-675-3p beg:310 end:329 pic:3' TGACTCGCCAATCCCGTATGTC 5'& ||| | ||| ||||.||| &5' --TGA-CTGTT---GCATGCAG 3' Trim40 mmu-miR-679 beg:330 end:353 pic:3' TGGTTCTCAGTGGA-GTGTCAGG 5'& . ||.|| |..| |||||||| &5' -TTGAGGGTGATTTCCACAGTCC 3' Trim40 mmu-miR-693-5p beg:80 end:101 pic:3' CTTTTGAAAGCCTACACCGAC 5'& |.|||| | ||||||| &5' --AGACTTGAGCTTGTGGCT- 3' Trim40 mmu-miR-694 beg:0 end:20 pic:3' GAAGT-CCGTTGTAAAAGTC 5'& |||| ||. |.||| ||| &5' CTTCCTGGT-ATATTCTCA- 3' Trim40 mmu-miR-710 beg:313 end:334 pic:3' GAGTTGAGAGGGGT--TCTGAACC 5'& .||| |. | ||||||| &5' ---GACTGTTGCATGCAGACTTG- 3' Trim40 mmu-miR-760 beg:17 end:39 pic:3' AGGGGTGTCT-GGGTCTCGGC 5'& |||.||||| |||| |.| &5' TCCTCACAGCTCCCAT--CTG 3' Trim40 mmu-miR-871 beg:176 end:199 pic:3' GTACTGACCGTGATT----AGACTTAT 5'& ||||. | ||||.||. &5' -------GGCATCGAAACATCTGGATG 3' Trim40 mmu-miR-879star beg:703 end:723 pic:3' GGCTTTCGAACTTCGGTATTCG 5'& || ||.|| ||||||| &5' CCCATAGTTT----CCATAAG- 3' Trim40 mmu-miR-99bstar beg:78 end:96 pic:3' GCCTGGGTGTCTGTGCTCGAAC 5'& | ||||| .||||||| &5' ------C-CAGACTTGAGCTTG 3' Trim40 mmu-let-7gstar beg:280 end:293 pic:3' CGTTCCGTCACCGGACATGTCA 5'& |..||||||| &5' -----------GTTTGTACAG- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim40 RAID00197298 mmu-miR-144-3p miRNA MIMAT0000156 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID00360611 mmu-miR-6976-5p miRNA MIMAT0027854 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID00422878 mmu-miR-6985-3p miRNA MIMAT0027873 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID00653950 mmu-miR-6983-5p miRNA MIMAT0027868 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID00717330 mmu-miR-132-3p miRNA MIMAT0000144 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID00743712 mmu-miR-7054-5p miRNA MIMAT0028012 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID00815691 mmu-miR-216a-5p miRNA MIMAT0000662 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID00843192 mmu-miR-6999-5p miRNA MIMAT0027900 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID00958177 mmu-miR-346-3p miRNA MIMAT0017039 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID01176665 mmu-miR-6934-5p miRNA MIMAT0027768 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID01186774 mmu-miR-224-5p miRNA MIMAT0000671 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID01497724 mmu-miR-7001-5p miRNA MIMAT0027904 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID01654979 mmu-miR-361-5p miRNA MIMAT0000704 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID01669663 mmu-miR-28a-5p miRNA MIMAT0000653 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID01904451 mmu-miR-205-5p miRNA MIMAT0000238 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID01948032 mmu-miR-135a-1-3p miRNA MIMAT0004531 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID02005054 mmu-miR-212-3p miRNA MIMAT0000659 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID02037105 mmu-miR-6924-5p miRNA MIMAT0027748 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID02155036 mmu-miR-708-5p miRNA MIMAT0004828 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID02438857 mmu-miR-673-5p miRNA MIMAT0003739 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID02477680 mmu-miR-7069-5p miRNA MIMAT0028044 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID02488653 mmu-miR-34a-3p miRNA MIMAT0017022 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID02849884 mmu-miR-880-3p miRNA MIMAT0004844 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID02982142 mmu-miR-8107 miRNA MIMAT0031412 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID03046972 mmu-miR-7676-5p miRNA MIMAT0029860 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID03075842 mmu-miR-7665-5p miRNA MIMAT0029836 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID03271465 mmu-miR-340-5p miRNA MIMAT0004651 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID03576952 mmu-miR-5620-3p miRNA MIMAT0022368 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID03676565 mmu-miR-183-5p miRNA MIMAT0000212 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID03780354 mmu-miR-203-3p miRNA MIMAT0000236 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID03817229 mmu-miR-7044-5p miRNA MIMAT0027992 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID03871710 mmu-miR-7688-3p miRNA MIMAT0029907 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID03971951 mmu-miR-7652-3p miRNA MIMAT0029811 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID03984544 mmu-miR-122-5p miRNA MIMAT0000246 Trim40 mRNA 195359 Prediction 0.1828 Trim40 RAID04044576 mmu-miR-433-3p miRNA MIMAT0001420 Trim40 mRNA 195359 Prediction 0.1828