Trim10
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0000240mmu-miR-20719824Trim10cucccuccUCUCGGUCCUCUUCg | | :: ||||||| uucaagaaACACUUUGGAGAAGu216374396[mm9:17:37014682-37014704:+]0.50941437-13.95-0.8908
MIMAT0004578mmu-miR-300*19824Trim10uguUUCCUAUUGGA---GAGAAGUu || | |||:| ||||||| uucAAACAAAACUUUGCCUCUUCAu220308332[mm9:17:37014616-37014640:+]0.52021507-12.71-0.7927
MIMAT0004578mmu-miR-300*19824Trim10uguuuccuauuggagAGAAGUu |||||| cuaguuuuuuucauaUCUUCAa28357378[mm9:17:37014665-37014686:+]0.52021206-10.53-0.1057
MIMAT0004660mmu-miR-19a*19824Trim10cauCACGUUGA--UACGUUUUGAu |||::|:| | ||||||| gcuGUGUGAUUUCAAACAAAACUu220298321[mm9:17:37014606-37014629:+]0.52021547-11.70-0.9462
MIMAT0000706mmu-miR-362-5p19824Trim10uaaguguggauccaaggUUCCUAa |||||| cauuaauuaaauuccagAAGGAUa28422445[mm9:17:37014730-37014753:+]0.50041206-12.53-0.2921
MIMAT0000744mmu-miR-380-5p19824Trim10gcgUACAAGAUACCAGUUGGUa | | ||:| ||||||| gugAAGCCCUGUAAUCAACCAg220277298[mm9:17:37014585-37014606:+]0.51151517-12.94-0.4562
MIMAT0001094mmu-miR-41219824Trim10gccgaucACCU--GGUCCACUu |||| |||||||| cgagaccUGGAUUCCAGGUGAa214260281[mm9:17:37014568-37014589:+]0.50281527-21.69-0.3248
MIMAT0003896mmu-miR-76319824Trim10cggugaccaagaagGGUCGACc ||||||| agcccuguaaucaaCCAGCUGu29281302[mm9:17:37014589-37014610:+]0.51151407-21.78-0.6833
MIMAT0003466mmu-miR-68719824Trim10aguaacgacguaaggUCCUAUc |||||| uaauuaaauuccagaAGGAUAa28425446[mm9:17:37014733-37014754:+]0.50231206-10.90-0.3897
MIMAT0003476mmu-miR-669b19824Trim10ugUACGUGUACGUGUGUUUUGa :||:: | || ||||||| cuGUGUGAUUUCAAACAAAACu221299320[mm9:17:37014607-37014628:+]0.52021567-10.85-0.9069
MIMAT0003498mmu-miR-708*19824Trim10gaucuucgagugucaGAUCAAc |||||| uuccaaagauauuagCUAGUUu28342363[mm9:17:37014650-37014671:+]0.52021206-10.03-0.1741
MIMAT0003502mmu-miR-71219824Trim10ccauggcgggcccaCUUCCUc |||||| uuaauuaaauuccaGAAGGAu28424444[mm9:17:37014732-37014752:+]0.50041206-8.63-0.1099
MIMAT0003508mmu-miR-501-5p19824Trim10aaagugggucccugUUUCCUAa :|||||| uuaauuaaauuccaGAAGGAUa29424445[mm9:17:37014732-37014753:+]0.50041246-11.31-0.2921
MIMAT0004842mmu-miR-87919824Trim10ccgaAUCUCGAUAUUCGGAGa |:|| :| |||||||| gugcUGGA-UUUUAAGCCUCg218242261[mm9:17:37014550-37014569:+]0.50281557-16.43-0.6104
MIMAT0004892mmu-miR-56819824Trim10cacaCAUAUGUAAAUAUGUa ||| || | |||||| caaaGUACAC-UAUAUACAu217406424[mm9:17:37014714-37014732:+]0.49861266-9.15-0.1146
MIMAT0004898mmu-miR-654-3p19824Trim10uuccacUACCAGUCGUCUGUAu |||| || ||||||| gcaucaAUGGGCA-CAGACAUa217209229[mm9:17:37014517-37014537:+]0.50281587-18.15-0.7219
MIMAT0004938mmu-miR-875-3p19824Trim10guAUCGGAGUCAUAAAAGUcc ||| || : | |||||| auUAG-CUAGUUUUUUUCAua320352371[mm9:17:37014660-37014679:+]0.52021330-8.30-0.1060
MIMAT0007864mmu-miR-1897-5p19824Trim10ggGGGAGAAAGAGGUAGGUUUc | :|:| |:|:| |||||| uuCAUUUUGUUUUCUUCCAAAg221328349[mm9:17:37014636-37014657:+]0.52021366-17.61-0.1033
MIMAT0009409mmu-miR-194419824Trim10uuAGUCUUGAACUGUA---AGUCGUGUCUc ||| | |||:||| | :||||||| ucUCACCA-UUGGCAUCAAUGGGCACAGAc226198226[mm9:17:37014506-37014534:+]0.50281627-21.22-0.2538
MIMAT0009424mmu-miR-195319824Trim10gucuucgGACUCUUGAAAGGGu :| | : ||||||| uucauugUUCAAGCCUUUCCCc216127148[mm9:17:37014435-37014456:+]0.45371437-12.54-0.1698
MIMAT0009426mmu-miR-195519824Trim10uuuUCGACG-UCACGUAGGACCCUGa || | | | |:|| ||||||| aucAGAUACUCGGGUAU-CUGGGACc223156180[mm9:17:37014464-37014488:+]0.47821517-22.59-0.1719
MIMAT0009455mmu-miR-198319824Trim10ucUUUUGUAC--GAGGUCCACUc :|:|| || :||||||||| ucGAGACCUGGAUUCCAGGUGAa220259281[mm9:17:37014567-37014589:+]0.50281627-20.12-0.3194
MIMAT0013803mmu-miR-286119824Trim10ggCGGGCGGCGGUC-CGGGg |||: :| |||| |||| aaGCCUUUCCCCAGUGCCCa218137156[mm9:17:37014445-37014464:+]0.45371250-24.00-0.3902
MIMAT0015640mmu-miR-3470a19824Trim10ggucggaccagaUGUUUCACu |||||||| gggucaccaagcACAAAGUGa2104565[mm9:17:37014353-37014373:+]0.49661457-16.04-0.9136
MIMAT0015640mmu-miR-3470a19824Trim10ggucggaccagaUGUUUCACu |||||||| ugucaguaagggACAAAGUGg21090110[mm9:17:37014398-37014418:+]0.45371457-22.25-0.3671
MIMAT0000142mmu-miR-919824Trim10aguaugucgaucuauuGGUUUCu |||||| uucauuuuguuuucuuCCAAAGa28328350[mm9:17:37014636-37014658:+]0.52021206-13.65-0.2279
MIMAT0000155mmu-miR-142-3p19824Trim10aggUAU-UUCAUCCUUUGUGAUGu ||| :| | : ||||||: uggAUAUGAUCAAAGUACACUAUa221396419[mm9:17:37014704-37014727:+]0.49861270-11.64-0.2243
MIMAT0000160mmu-miR-15019824Trim10guGACCAU-GUUC---CCAACCCUCu |||| | |||| ||||||| gaCUGGAAUCAAGCACCCUUGGGAGc221732[mm9:17:37014315-37014340:+]0.51671507-22.94-0.6027
MIMAT0000212mmu-miR-18319824Trim10ucacuuAAGAUGGUCAC-GGUAu ||: |||||| |||| caagccUUUCCCCAGUGCCCAUc217136158[mm9:17:37014444-37014466:+]0.45371240-15.84-0.2956
MIMAT0000663mmu-miR-21819824Trim10uguACCAAUCUAGUUCGUGUu ||| | | |||||||| ggcUGGGU-CACCAAGCACAa2194160[mm9:17:37014349-37014368:+]0.49661527-18.64-0.3399
MIMAT0000677mmu-miR-7a19824Trim10uguuguuuuagugaucAGAAGGu |||||| ccucuucauuuuguuuUCUUCCa28324346[mm9:17:37014632-37014654:+]0.52021206-11.63-0.2690
MIMAT0000678mmu-miR-7b19824Trim10uguuguuuuaguguucAGAAGGu |||||| ccucuucauuuuguuuUCUUCCa28324346[mm9:17:37014632-37014654:+]0.52021206-9.88-0.2690
MIMAT0000741mmu-miR-37719824Trim10uguuuucaacggaaACACACUa ||||||| uguaaucaaccagcUGUGUGAu29286307[mm9:17:37014594-37014615:+]0.51151407-13.02-0.4810
MIMAT0001095mmu-miR-37019824Trim10ugguccAAGGUGGGGUCGUCCg || |::|||| ||| cauuaaUUAAAUUCCAGAAGGa217422443[mm9:17:37014730-37014751:+]0.50041240-15.51-0.1584
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G057504Trim10Mus musculus19824
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
Trim10mmu-miR-879beg:243end:261pic:3' CCGAATCTCGATATTCGGAGA 5'& || |.|| .| |||||||| &5' -GC-TGGA-TTTTAAGCCTC- 3'
Trim10mmu-miR-654-3pbeg:212end:230pic:3' TTCCACTACCAGTCGTCTGTAT 5'& |||| || |||||||| &5' ------ATGGGCA-CAGACATA 3'
Trim10mmu-miR-412beg:264end:282pic:3' GCCGATCACCT--GGTCCACTT 5'& |||| ||||||||| &5' -------TGGATTCCAGGTGAA 3'
Trim10mmu-miR-1955beg:161end:180pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& || |.| |.|| ||||||| &5' -----CT-CGG-GTAT-CTGGGAC- 3'
Trim10mmu-miR-207beg:386end:397pic:3' CTCCCTCCTCTCGGTCCTCTTCG 5'& |||||||. &5' ---------------GGAGAAGT 3'
Trim10mcmv-miR-m01-3beg:109end:134pic:3' AGC-TCCGTT--GTCAGCGAAGTGGC 5'& | ||| .|||. |||||..| &5' --GTAGGACCTTTAGTTTCTTCATTG 3'
Trim10mmu-let-7dbeg:311end:329pic:3' TTGATACGTTGGATGATGGAGA 5'& ||| .|.||||| &5' -------CAAAACTTTGCCTCT 3'
Trim10mmu-let-7fbeg:310end:328pic:3' TTGATATGTTAGATGATGGAGT 5'& |||| .|.|||| &5' ------ACAAAACTTTGCCTC- 3'
Trim10mmu-let-7gbeg:310end:328pic:3' TTGACATGTTTGATGATGGAGT 5'& ||||| .|.|||| &5' ------ACAAAACTTTGCCTC- 3'
Trim10mmu-miR-105beg:161end:185pic:3' TGGTGTTCGTAGACTCGTGAACC 5'& | |..|.|||||.| ||||| &5' --CTCGGGTATCTGGGACCTTGG 3'
Trim10mmu-miR-106bbeg:122end:145pic:3' TAGACGTGACAG--TCGTGAAAT 5'& ||| ||.|||. ||| |||| &5' -TCTTCATTGTTCAAGC-CTTT- 3'
Trim10mmu-miR-1190beg:25end:47pic:3' CTGTCTCCCCTTGGAGTCGACT 5'& .||| || ||||.||||. &5' ---GGAGCAGACCCTCGGCTGG 3'
Trim10mmu-miR-1191beg:1end:12pic:3' ATCCCGATGTATCATTCTGAC 5'& |.|||||| &5' -------------TGAGACTG 3'
Trim10mmu-miR-132beg:174end:199pic:3' GCTGGTACCGACAT--CTGACAAT 5'& |||| |||||| |.||||| &5' -GACCTTGGCTGCGCTGGCTGTT- 3'
Trim10mmu-miR-146abeg:184end:203pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& .| | ||| ||||||| &5' -GCGC-TGGCT----GTTCTCA 3'
Trim10mmu-miR-146bbeg:181end:203pic:3' TCGGAT--ACCTTAAGTCAAGAGT 5'& .||. ||| ||||||| &5' GGCTGCGCTGGCT----GTTCTCA 3'
Trim10mmu-miR-150beg:13end:32pic:3' GTGACCATGTTCCC---AACCCTCT 5'& |||| ||||||| &5' --------CAAGCACCCTTGGGAG- 3'
Trim10mmu-miR-154starbeg:288end:309pic:3' TTATCCAGTTGG-C-ACATACTAA 5'& |||||| | |||.||||| &5' ------TCAACCAGCTGTGTGATT 3'
Trim10mmu-miR-188-3pbeg:28end:48pic:3' ACGTTTGGGACGTACACCCTC 5'& |||.||||| |. |||| &5' -GCAGACCCT-CGGCTGGG-- 3'
Trim10mmu-miR-1937cbeg:164end:179pic:3' ACCCCCGAGAAGGCCCTA 5'& |||. ||.|||| &5' ---GGGTA--TCTGGGA- 3'
Trim10mmu-miR-1944beg:205end:226pic:3' TTAGTCTTGAACTGTA---AGTCGTGTCTC 5'& |||.||| | .||||||| &5' ---------TTGGCATCAATGGGCACAGA- 3'
Trim10mmu-miR-1967beg:353end:378pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& || ||.|. || |||.||| &5' GCTAGTTTTTTTCAT-ATCTTCA 3'
Trim10mmu-miR-1967beg:185end:203pic:3' CGTAGAAGAGGGGTCC-TAGGAGT 5'& | | | .|.|||| &5' ---------CGCTGGCTGTTCTCA 3'
Trim10mmu-miR-1968beg:282end:303pic:3' TCAGGTGG-TAGGAATTGTCGACGT 5'& || ||| ||||||. &5' ---CCTGTAATCAAC--CAGCTGT- 3'
Trim10mmu-miR-1970beg:134end:157pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& |||||| ||||||||| | || &5' --AAGCCTTTCCCCAGTGCC-CA 3'
Trim10mmu-miR-1983beg:258end:281pic:3' TCTTTTGTAC--GAGGTCCACTC 5'& .|.|| || .||||||||| &5' --GAGACCTGGATTCCAGGTGA- 3'
Trim10mmu-miR-19astarbeg:299end:321pic:3' CATCACGTTGATAC--GTTTTGAT 5'& ||| |.| ||||||| &5' ---GTGTGATTTCAAACAAAACT- 3'
Trim10mmu-miR-218beg:393end:415pic:3' TGTACCAAT-CTAG-TTCGTGTT 5'& .||| || |||| |||.||| &5' --GTGGATATGATCAAAGTACA- 3'
Trim10mmu-miR-218beg:38end:61pic:3' TGTACCAATCTAGT---TCGTGTT 5'& || |.|.||| ||||||| &5' ----GGCTGGGTCACCAAGCACAA 3'
Trim10mmu-miR-27astarbeg:241end:260pic:3' ACGAGTGTTCGTCGATTCGGGA 5'& |||| .| .||||||. &5' TGCT----GGATTTTAAGCCT- 3'
Trim10mmu-miR-300starbeg:111end:131pic:3' TGTTTCCTATTGGAG-----AGAAGTT 5'& .||||. |||||| &5' ---------GACCTTTAGTTTCTTCA- 3'
Trim10mmu-miR-30astarbeg:0end:15pic:3' CGACGTTTGTAGGCTGACTTTC 5'& .|| |||||.|| &5' --------TATGAGACTGGAA- 3'
Trim10mmu-miR-30estarbeg:0end:15pic:3' CGACATTTGTAGGCTGACTTTC 5'& .|| |||||.|| &5' --------TATGAGACTGGAA- 3'
Trim10mmu-miR-338-3pbeg:233end:250pic:3' GTTGTTTTAGTGAC-TACGACCT 5'& || .||||||| &5' ---------CAAACAGTGCTGGA 3'
Trim10mmu-miR-342-5pbeg:10end:27pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& ||||| |||||||.| &5' ---AATCA-----AGCACCCTT 3'
Trim10mmu-miR-3470abeg:90end:111pic:3' GGTCGGACCAGATGTTTCACT 5'& |||. || ||||||||. &5' -CAGTAAGGG--ACAAAGTGG 3'
Trim10mmu-miR-3470abeg:43end:66pic:3' GGTCGGACCAGA------TGTTTCACT 5'& |||| ||||||||| &5' -------GGTCACCAAGCACAAAGTGA 3'
Trim10mmu-miR-3471beg:295end:312pic:3' TTACGGAATGTCAAC-CTAGAGT 5'& ||. || |||.||| &5' ---GCTG------TGTGATTTCA 3'
Trim10mmu-miR-3471beg:236end:255pic:3' TTACGGAATGTCA--ACCTAGAGT 5'& ||||| |||||.|.| &5' --------ACAGTGCTGGATTTTA 3'
Trim10mmu-miR-380-5pbeg:282end:298pic:3' GCGTACAAGATACCAGTTGGTA 5'& ||.| ||||||| &5' --------CTGTAATCAACCA- 3'
Trim10mmu-miR-431starbeg:276end:297pic:3' TCTTCGGGACGTTCTGCTGGAC 5'& |||||||||.|| | ||| &5' -GAAGCCCTGTAAT-CAACC-- 3'
Trim10mmu-miR-450a-3pbeg:129end:152pic:3' TACTTACGT-TTCGT--AGGGGTTA 5'& ||. |||| ||||||.| &5' -----TGTTCAAGCCTTTCCCCAGT 3'
Trim10mmu-miR-468beg:219end:244pic:3' GTCTGTG--TGCGTGTA-GTCAGTAT 5'& ||||||. |.|.||| |||| &5' CAGACATAGATGTACAAACAGT---- 3'
Trim10mmu-miR-493beg:104end:122pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& . ||||||||||.| &5' --------GTGGTAGGACCTTTA 3'
Trim10mmu-miR-539beg:110end:130pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& . ||| ||.|||||.| &5' --GGACCTT---TAGTTTCTTC 3'
Trim10mmu-miR-592beg:206end:231pic:3' TGTAGTAG--CGTATAACTGTGTTA 5'& .||||| ||| ||||.|. &5' GCATCAATGGGCACA--GACATAG- 3'
Trim10mmu-miR-669gbeg:228end:246pic:3' TAGTACAGTTGTGTATGTTACGT 5'& |||| ||| |||.||| &5' ---ATGT----ACAAACAGTGC- 3'
Trim10mmu-miR-759beg:68end:93pic:3' CAGTTT-TAACAAA-CGTGAGACG 5'& |.|.| ||||||| |||. ||. &5' -TTAGACATTGTTTGGCATG-TGT 3'
Trim10mmu-miR-763beg:282end:302pic:3' CGGTGACCAAGAAGGGTCGACC 5'& || ||| ||||||| &5' -CC-CTGTAATCAACCAGCTG- 3'
Trim10mmu-miR-7bbeg:326end:347pic:3' TGTTGTTTTAGTGTTC----AGAAGGT 5'& |||. ||||||| &5' ---------TCATTTTGTTTTCTTCCA 3'
Trim10mmu-miR-9beg:393end:411pic:3' AGTATGTCGATC-TATTGGTTTCT 5'& ||. ||.|.||||| &5' ------AGTGGATATGATCAAAG- 3'
Trim10mmu-miR-98beg:310end:328pic:3' TTGTTATGTTGAATGATGGAGT 5'& |||| .|.|||| &5' ------ACAAAACTTTGCCTC- 3'
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Trim10RAID00541940mmu-miR-7216-3pmiRNAMIMAT0028401Trim10mRNA19824Prediction0.1828
Trim10RAID00636719mmu-miR-7a-5pmiRNAMIMAT0000677Trim10mRNA19824Prediction0.1828
Trim10RAID00673058mmu-miR-377-3pmiRNAMIMAT0000741Trim10mRNA19824Prediction0.1828
Trim10RAID00693114mmu-miR-5101miRNAMIMAT0020608Trim10mRNA19824Prediction0.1828
Trim10RAID01667787mmu-miR-9-5pmiRNAMIMAT0000142Trim10mRNA19824Prediction0.1828
Trim10RAID01973164mmu-miR-150-5pmiRNAMIMAT0000160Trim10mRNA19824Prediction0.1828
Trim10RAID02307353mmu-miR-8108miRNAMIMAT0031413Trim10mRNA19824Prediction0.1828
Trim10RAID02513309mmu-miR-183-5pmiRNAMIMAT0000212Trim10mRNA19824Prediction0.1828
Trim10RAID02566122mmu-miR-7b-5pmiRNAMIMAT0000678Trim10mRNA19824Prediction0.1828
Trim10RAID02603979mmu-miR-7005-5pmiRNAMIMAT0027914Trim10mRNA19824Prediction0.1828
Trim10RAID02958106mmu-miR-7043-3pmiRNAMIMAT0027991Trim10mRNA19824Prediction0.1828
Trim10RAID03030336mmu-miR-7683-3pmiRNAMIMAT0029887Trim10mRNA19824Prediction0.1828
Trim10RAID03125923mmu-miR-6975-5pmiRNAMIMAT0027852Trim10mRNA19824Prediction0.1828
Trim10RAID03224824mmu-miR-763miRNAMIMAT0003896Trim10mRNA19824Prediction0.1828
Trim10RAID03292206mmu-miR-7042-3pmiRNAMIMAT0027989Trim10mRNA19824Prediction0.1828
Trim10RAID03653467mmu-miR-142a-3pmiRNAMIMAT0000155Trim10mRNA19824Prediction0.1828
Trim10RAID03685191mmu-miR-370-3pmiRNAMIMAT0001095Trim10mRNA19824Prediction0.1828
Trim10RAID03893305mmu-miR-218-5pmiRNAMIMAT0000663Trim10mRNA19824Prediction0.1828
Trim10RAID03957361mmu-miR-7231-5pmiRNAMIMAT0028430Trim10mRNA19824Prediction0.1828
Trim10RAID03959239mmu-miR-207miRNAMIMAT0000240Trim10mRNA19824Prediction0.1828
Trim10RAID04001049mmu-miR-7013-5pmiRNAMIMAT0027930Trim10mRNA19824Prediction0.1828