DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Cpne1 ATTTA 143-1753 2559-2563;2926-2930;3037-3041;3212-3216 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT593948 mmu-miR-574-5p Mus musculus Cpne1 266692 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080 MIRT593947 mmu-miR-1199-5p Mus musculus Cpne1 266692 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080 MIRT593949 mmu-miR-3094-5p Mus musculus Cpne1 266692 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080 MIRT593950 mmu-miR-1186b Mus musculus Cpne1 266692 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004527 mmu-miR-124* 266692 Cpne1 uaGUUCCAGGC-GACACUUGUGc | :|| |:| || ||||||| aaCUGGGGCUGACUAUGAACACg 2 21 389 411 [mm9:2:155898846-155898868:-] 0.5090 159 7 -22.53 -0.1658 MIMAT0000137 mmu-miR-126-5p 266692 Cpne1 gcGCAUGG---UUUUCAUUAU-UAc :|||:| |||| ||||| || uaUGUAUCAAUAAAAUUAAUAUAUc 2 20 1646 1670 [mm9:2:155897587-155897611:-] 0.5077 126 0 -8.49 -0.8335 MIMAT0003473 mmu-miR-133a* 266692 Cpne1 uaaacCAAGGUAAAAUGGUCg ||| | |||||||| caacaGUUGCCCUUUACCAGc 2 17 748 768 [mm9:2:155898489-155898509:-] 0.5019 156 7 -18.03 -0.1501 MIMAT0000154 mmu-miR-142-5p 266692 Cpne1 ucaucacgaaagaUGAAAUAc ||||||| ucauuuggggaaaACUUUAUa 2 9 819 839 [mm9:2:155898418-155898438:-] 0.5029 140 7 -6.86 -0.5935 MIMAT0004575 mmu-miR-295* 266692 Cpne1 cuUCACACGGGGUGUAAACUCa ||| || : :: ||||||| ugAGUUUGAUGUGAAUUUGAGg 2 21 1080 1101 [mm9:2:155898156-155898177:-] 0.5012 156 7 -11.74 -0.2209 MIMAT0004575 mmu-miR-295* 266692 Cpne1 cuucAC-ACGGGGUGUAAACUCa || | |::| :||||||| uuccUGCUCCUUCCUAUUUGAGc 2 19 695 717 [mm9:2:155898540-155898562:-] 0.5009 153 7 -17.16 -0.1753 MIMAT0000378 mmu-miR-300 266692 Cpne1 cuucucUCGAACGGGAAC-GUAu | :|||::|||| ||| gcuuuuAUUUUGUUCUUGACAUg 2 17 1527 1549 [mm9:2:155897708-155897730:-] 0.5077 124 0 -14.58 -0.4694 MIMAT0004583 mmu-miR-130b* 266692 Cpne1 ucaucACGUUGUCCCUUU-CUCa | ||::| ||||| ||| gguuuUUCAGUAUGGAAAUGAGa 2 18 1317 1339 [mm9:2:155897918-155897940:-] 0.5095 125 0 -13.27 -0.3906 MIMAT0004617 mmu-miR-148a* 266692 Cpne1 ucagccucacagaGUCUUGAAa |||||||| gugccuuauccacCAGAACUUa 2 10 1184 1205 [mm9:2:155898052-155898073:-] 0.5102 145 7 -10.45 -0.2543 MIMAT0004627 mmu-miR-20a* 266692 Cpne1 gaaaUUCACGAGCA-UUACGUCa ::| |||| | ||||||| ggagGGGAGCUCCUAAAUGCAGg 2 19 962 984 [mm9:2:155898273-155898295:-] 0.5010 157 7 -15.32 -0.2512 MIMAT0004628 mmu-miR-21* 266692 Cpne1 cugucggGUAGCUGACGACAAc ||| | ||||||| aagcaaaCAU-GUGUGCUGUUu 2 16 1139 1159 [mm9:2:155898098-155898118:-] 0.5057 145 7 -14.47 -0.2199 MIMAT0004636 mmu-miR-93* 266692 Cpne1 gccCUUCACGAUCGAGUC-GUCa |:||| : || |||| ||| cgaGGAGUUUCAGGUCAGACAGa 2 20 1106 1128 [mm9:2:155898129-155898151:-] 0.5012 127 0 -18.25 -0.5870 MIMAT0000544 mmu-miR-129-3p 266692 Cpne1 uacgaAAAACCCCAUUCCCGAa |||| | ||||||||| caaugUUUUAGAGUAAGGGCUg 2 18 454 475 [mm9:2:155898782-155898803:-] 0.5090 169 7 -19.65 -0.3604 MIMAT0000549 mmu-miR-322* 266692 Cpne1 cacaAC-GUCGCGAAGUACAAa || :| :|:|||||||| caucUGUUACUGUUUCAUGUUu 2 18 1568 1589 [mm9:2:155897668-155897689:-] 0.5077 156 7 -15.70 -1.0587 MIMAT0004640 mmu-miR-325 266692 Cpne1 aacuauccuccACG-AGUUAUUu ||: ||||||| aaauauaucuaUGUAUCAAUAAa 2 12 1637 1659 [mm9:2:155897598-155897620:-] 0.5077 142 7 -7.89 -1.2383 MIMAT0000569 mmu-miR-330* 266692 Cpne1 agagacguccGGGACACGAAACg | || ||||||| gagagagccaCACU-UGCUUUGa 2 14 219 240 [mm9:2:155899017-155899038:-] 0.5126 143 7 -14.68 -0.4070 MIMAT0004656 mmu-miR-345-3p 266692 Cpne1 cagaGGUCUGGGGAUCAAGUCc |::|| |: ||||||| guagCUGGAACUACAGUUCAGu 2 19 901 922 [mm9:2:155898335-155898356:-] 0.5006 154 7 -17.10 -0.1174 MIMAT0004660 mmu-miR-19a* 266692 Cpne1 caucaCGUU-GAUACGU-UUUGAu |:|| ||:| || ||||| ucucaGUAACCUGUUCACAAACUg 2 18 1494 1517 [mm9:2:155897740-155897763:-] 0.5077 124 0 -11.65 -0.5772 MIMAT0004670 mmu-miR-7a* 266692 Cpne1 auACCGUCU-GACACU-AAACAAc || :||| || | | |||||| uaUGUUAGAGCUUUUAUUUUGUUc 2 21 1518 1541 [mm9:2:155897716-155897739:-] 0.5077 127 6 -9.54 -0.6738 MIMAT0000706 mmu-miR-362-5p 266692 Cpne1 uaaGUGUGGAUCCAAGGUUCCUAa :|||::| | | |||||||| cccUACAUUUUGUUGCCAAGGAUa 2 22 664 687 [mm9:2:155898570-155898593:-] 0.5009 169 7 -20.19 -0.2605 MIMAT0000706 mmu-miR-362-5p 266692 Cpne1 uaaguguggauccaAGGUUCCUAa |:||||||| gucuaauaaccccaUUCAAGGAUu 2 11 269 292 [mm9:2:155898965-155898988:-] 0.5140 146 7 -14.67 -0.7255 MIMAT0004691 mmu-miR-382* 266692 Cpne1 uuuuucacaacaggcACUUACu |||||| uuuuuuuuaauauaaUGAAUGa 2 8 785 806 [mm9:2:155898451-155898472:-] 0.5029 120 6 -7.50 -0.1896 MIMAT0003388 mmu-miR-376b* 266692 Cpne1 auuGGUAUCUUCCU--UAUAGGUg | ||| || | ||||||| uauCAAUAAAAUUAAUAUAUCCAc 2 20 1650 1673 [mm9:2:155897584-155897607:-] 0.5077 150 7 -11.69 -0.5265 MIMAT0003388 mmu-miR-376b* 266692 Cpne1 auuGGUAUCUUCCUUAUA-GGUg |: | | | |||||| ||| gucCUUUUGUAAGAAUAUACCAg 2 20 1229 1251 [mm9:2:155898006-155898028:-] 0.5016 123 0 -9.55 -0.5590 MIMAT0001094 mmu-miR-412 266692 Cpne1 gccgaucaccugGUCCACUu ||||||| aaugagagauugCAGGUGAu 2 9 1333 1352 [mm9:2:155897905-155897924:-] 0.5095 140 7 -12.01 -0.4520 MIMAT0004759 mmu-miR-466a-5p 266692 Cpne1 auACAUG-UACAUGUGUGUGUAu | ||| :|| :|||||||| gaUUUACUGUGAUUACACACAUu 2 21 1283 1305 [mm9:2:155897952-155897974:-] 0.5097 159 7 -17.39 -0.7690 MIMAT0002107 mmu-miR-466a-3p 266692 Cpne1 agaauacacacgcACAUACAUAu | ||||||| uuuaaaaaauauaUCUAUGUAUc 2 11 1631 1653 [mm9:2:155897604-155897626:-] 0.5077 142 7 -4.08 -0.9869 MIMAT0002107 mmu-miR-466a-3p 266692 Cpne1 agAAUACACACGCACAUACAUau |||| | | | |||||| uuUUAUAU-UCC--AUAUGUAaa 3 22 1588 1607 [mm9:2:155897650-155897669:-] 0.5077 124 0 -3.35 -0.1107 MIMAT0002108 mmu-miR-467a-1* 266692 Cpne1 cacauccACACACAUACAUAua | | | ||||||| uaaaaaaUAUAUCUAUGUAUca 3 16 1633 1654 [mm9:2:155897603-155897624:-] 0.5077 131 0 -3.88 -0.3280 MIMAT0003167 mmu-miR-540-3p 266692 Cpne1 ggUCCUAGCUGGAGACUGGa |||: :|| ||||||| agAGGGGUGA--UCUGACCu 2 19 1391 1408 [mm9:2:155897849-155897866:-] 0.4983 151 7 -21.26 -0.1609 MIMAT0005295 mmu-miR-376c* 266692 Cpne1 auuugUAUCUUCCU--UAUAGGUg ||| || | ||||||| uaucaAUAAAAUUAAUAUAUCCAc 2 18 1650 1673 [mm9:2:155897584-155897607:-] 0.5077 148 7 -10.84 -0.5265 MIMAT0005295 mmu-miR-376c* 266692 Cpne1 auuuguAUCUUCCUUAUA-GGUg | | | |||||| ||| guccuuUUGUAAGAAUAUACCAg 2 17 1229 1251 [mm9:2:155898006-155898028:-] 0.5016 120 0 -8.04 -0.5590 MIMAT0003186 mmu-miR-369-3p 266692 Cpne1 uuUCUAGUUGGUACAUAAUAa ||:| |:|| ||||||| gcAGGU--AUCA-GUAUUAUa 2 20 980 997 [mm9:2:155898260-155898277:-] 0.5010 150 7 -10.19 -0.9235 MIMAT0003891 mmu-miR-770-3p 266692 Cpne1 ggUCGAGGUGCAGUCCGGG-UGc ||| ||| | | ||||| || auAGC-CCA-GGCUGGCCCUACa 2 21 650 670 [mm9:2:155898587-155898607:-] 0.5009 120 0 -22.82 -0.3676 MIMAT0004188 mmu-miR-802 266692 Cpne1 uuccuacuuAG-AAACAAUGACu || | |||||||| auuuuucccUCAUCUGUUACUGu 2 14 1558 1580 [mm9:2:155897677-155897699:-] 0.5077 148 7 -11.09 -0.8951 MIMAT0003449 mmu-miR-488* 266692 Cpne1 aacuCUCACGAUA---AUAGACCc | |||||:| ||||||| acauGUGUGCUGUUUGUAUCUGGu 2 18 1145 1168 [mm9:2:155898089-155898112:-] 0.5102 156 7 -18.69 -0.1615 MIMAT0004825 mmu-miR-423-5p 266692 Cpne1 uuucagagcGAGAGACGG-GGAGu ||: ||||| |||| ccaccagaaCUUACUGCCUCCUCu 2 15 1193 1216 [mm9:2:155898041-155898064:-] 0.5059 122 0 -19.02 -0.7587 MIMAT0003462 mmu-miR-684 266692 Cpne1 aacUGAACUUCCCUUUUGa |:||| |||||||| uucAUUUG--GGGAAAACu 2 17 818 834 [mm9:2:155898423-155898439:-] 0.5029 153 7 -15.28 -0.3118 MIMAT0003470 mmu-miR-691 266692 Cpne1 aaaagacGGAGAG-AAGUCCUUa |:|:|| |||||||| cuggcacCUUUUCAUUCAGGAAa 2 16 150 172 [mm9:2:155899085-155899107:-] 0.5335 158 7 -17.81 -0.8573 MIMAT0003478 mmu-miR-467b* 266692 Cpne1 cacaaccACACACAUACAUAua | | | ||||||| uaaaaaaUAUAUCUAUGUAUca 3 16 1633 1654 [mm9:2:155897603-155897624:-] 0.5077 131 0 -3.88 -0.3280 MIMAT0004827 mmu-miR-297b-3p 266692 Cpne1 auacccaUACACACAUACAUAu || | | ||||||| uuaaaaaAUAUAUCUAUGUAUc 2 16 1632 1653 [mm9:2:155897604-155897625:-] 0.5077 151 7 -4.08 -0.9779 MIMAT0004827 mmu-miR-297b-3p 266692 Cpne1 auacccAUACACACAUACAUau ||| | |||||| uuuuuaUAU-UCCAUAUGUAaa 3 17 1587 1607 [mm9:2:155897650-155897670:-] 0.5077 122 0 -3.35 -0.1085 MIMAT0003481 mmu-miR-695 266692 Cpne1 aagUCAGUGGA---UACGGGU-UAGa :||||||| | |||| ||| gugGGUCACCUUCCUUCCCCAGAUCu 2 20 1419 1444 [mm9:2:155897813-155897838:-] 0.4990 122 0 -22.27 -0.2684 MIMAT0003485 mmu-miR-455* 266692 Cpne1 gcuacaUCAGGUUUCC-GUGUAu | |::| ||| ||||| gggaaaACUUUAUAGGACACAUc 2 17 826 848 [mm9:2:155898409-155898431:-] 0.5029 120 0 -9.56 -0.2739 MIMAT0003496 mmu-miR-706 266692 Cpne1 aaaaaacucugucccAAAGAGa |||||| ucuaguuuccauuuaUUUCUCu 2 8 1449 1470 [mm9:2:155897787-155897808:-] 0.5037 120 6 -7.00 -0.1095 MIMAT0003498 mmu-miR-708* 266692 Cpne1 gaucuUCGAGUGU-CAGAUCAAc || || || ||||||| uccccAGAUCUCAUUUCUAGUUu 2 18 1434 1456 [mm9:2:155897801-155897823:-] 0.4997 152 7 -14.47 -0.7096 MIMAT0003499 mmu-miR-709 266692 Cpne1 agGAGGAC--GGA-GACGGAGg | || | |:| ||||||| ucCACCAGAACUUACUGCCUCc 2 18 1192 1213 [mm9:2:155898044-155898065:-] 0.5102 143 7 -22.89 -0.7112 MIMAT0003512 mmu-miR-450b-3p 266692 Cpne1 uacguacguuuuacAAGGGUUa ||||||| cuuccuauuugagcUUCCCAAa 2 9 704 725 [mm9:2:155898532-155898553:-] 0.5009 140 7 -8.59 -0.3692 MIMAT0003512 mmu-miR-450b-3p 266692 Cpne1 uacguacguuuuacAAGGGUUa ||||||| guuuagcaguucccUUCCCAAc 2 9 1253 1274 [mm9:2:155897983-155898004:-] 0.5057 140 7 -12.97 -0.1594 MIMAT0003781 mmu-miR-676* 266692 Cpne1 cgUUCAGGAUUCCAACA-UCUCa |:|| ||| | ||| |||| gaAGGUGCUACAG-UGUAAGAGg 2 21 415 436 [mm9:2:155898821-155898842:-] 0.5090 122 0 -13.25 -0.1168 MIMAT0004238 mmu-miR-743a 266692 Cpne1 agAUGA-GUCGAACCAC-AGAAAg |||| | || || || ||||| ugUACUGCUGC-UGCUGCUCUUUg 2 21 112 134 [mm9:2:155899123-155899145:-] 0.5362 125 0 -12.26 -0.2454 MIMAT0004849 mmu-miR-883a-3p 266692 Cpne1 uaUGACUCUCGACAA-CGUCAAu |:| : || |||| |||||| auAUUUGCAG-UGUUAGCAGUUa 2 21 1351 1372 [mm9:2:155897885-155897906:-] 0.5095 126 6 -14.59 -0.2010 MIMAT0004850 mmu-miR-883b-5p 266692 Cpne1 acUGACGAUGGGUAAGAGUCAu || | :|| |||||||| auACACAUUUCC-UUCUCAGUa 2 21 1481 1501 [mm9:2:155897756-155897776:-] 0.5077 150 7 -16.82 -0.8972 MIMAT0004851 mmu-miR-883b-3p 266692 Cpne1 uaUGACUCUCUACAA-CGUCAAu |:| : || |||| |||||| auAUUUGCAG-UGUUAGCAGUUa 2 21 1351 1372 [mm9:2:155897885-155897906:-] 0.5095 126 6 -14.59 -0.2010 MIMAT0004864 mmu-miR-297a* 266692 Cpne1 auacccaUACACACAUACAUAu || | | ||||||| uuaaaaaAUAUAUCUAUGUAUc 2 16 1632 1653 [mm9:2:155897604-155897625:-] 0.5077 151 7 -4.08 -0.9779 MIMAT0004864 mmu-miR-297a* 266692 Cpne1 auacccAUACACACAUACAUau ||| | |||||| uuuuuaUAU-UCCAUAUGUAaa 3 17 1587 1607 [mm9:2:155897650-155897670:-] 0.5077 122 0 -3.35 -0.1085 MIMAT0004866 mmu-miR-297c* 266692 Cpne1 auacccaUACACACAUACAUAu || | | ||||||| uuaaaaaAUAUAUCUAUGUAUc 2 16 1632 1653 [mm9:2:155897604-155897625:-] 0.5077 151 7 -4.08 -0.9779 MIMAT0004866 mmu-miR-297c* 266692 Cpne1 auacccAUACACACAUACAUau ||| | |||||| uuuuuaUAU-UCCAUAUGUAaa 3 17 1587 1607 [mm9:2:155897650-155897670:-] 0.5077 122 0 -3.35 -0.1085 MIMAT0004875 mmu-miR-466b-5p 266692 Cpne1 guACAUG-UACAUGUGUGUGUAg | ||| :|| :|||||||| gaUUUACUGUGAUUACACACAUu 2 21 1283 1305 [mm9:2:155897952-155897974:-] 0.5097 159 7 -17.73 -0.7690 MIMAT0004876 mmu-miR-466b-3p 266692 Cpne1 agaauacacacgcACAUACAUAu | ||||||| uuuaaaaaauauaUCUAUGUAUc 2 11 1631 1653 [mm9:2:155897604-155897626:-] 0.5077 142 7 -4.08 -0.9869 MIMAT0004876 mmu-miR-466b-3p 266692 Cpne1 agAAUACACACGCACAUACAUau |||| | | | |||||| uuUUAUAU-UCC--AUAUGUAaa 3 22 1588 1607 [mm9:2:155897650-155897669:-] 0.5077 124 0 -3.35 -0.1107 MIMAT0005453 mmu-miR-466b-3-3p 266692 Cpne1 agaauacacacgcACAUACAUAa | ||||||| uuuaaaaaauauaUCUAUGUAUc 2 11 1631 1653 [mm9:2:155897604-155897626:-] 0.5077 142 7 -4.34 -0.9869 MIMAT0005453 mmu-miR-466b-3-3p 266692 Cpne1 agAAUACACACGCACAUACAUaa |||| | | | |||||| uuUUAUAU-UCC--AUAUGUAaa 3 22 1588 1607 [mm9:2:155897650-155897669:-] 0.5077 124 0 -3.35 -0.1107 MIMAT0004877 mmu-miR-466c-5p 266692 Cpne1 auACAUG-UACGUGUGUGUGUAg | ||| :|| :|||||||| gaUUUACUGUGAUUACACACAUu 2 21 1283 1305 [mm9:2:155897952-155897974:-] 0.5097 159 7 -17.29 -0.7690 MIMAT0004878 mmu-miR-466c-3p 266692 Cpne1 agaauacacacgcACAUACAUAu | ||||||| uuuaaaaaauauaUCUAUGUAUc 2 11 1631 1653 [mm9:2:155897604-155897626:-] 0.5077 142 7 -4.08 -0.9869 MIMAT0004878 mmu-miR-466c-3p 266692 Cpne1 agAAUACACACGCACAUACAUau |||| | | | |||||| uuUUAUAU-UCC--AUAUGUAaa 3 22 1588 1607 [mm9:2:155897650-155897669:-] 0.5077 124 0 -3.35 -0.1107 MIMAT0004879 mmu-miR-466e-5p 266692 Cpne1 auACAUG-UACAUGUGUGUGUAg | ||| :|| :|||||||| gaUUUACUGUGAUUACACACAUu 2 21 1283 1305 [mm9:2:155897952-155897974:-] 0.5097 159 7 -17.83 -0.7690 MIMAT0004880 mmu-miR-466e-3p 266692 Cpne1 agaauacacacgcACAUACAUAu | ||||||| uuuaaaaaauauaUCUAUGUAUc 2 11 1631 1653 [mm9:2:155897604-155897626:-] 0.5077 142 7 -4.08 -0.9869 MIMAT0004880 mmu-miR-466e-3p 266692 Cpne1 agAAUACACACGCACAUACAUau |||| | | | |||||| uuUUAUAU-UCC--AUAUGUAaa 3 22 1588 1607 [mm9:2:155897650-155897669:-] 0.5077 124 0 -3.35 -0.1107 MIMAT0004887 mmu-miR-467d* 266692 Cpne1 cacauccACACACAUACAUAua | | | ||||||| uaaaaaaUAUAUCUAUGUAUca 3 16 1633 1654 [mm9:2:155897603-155897624:-] 0.5077 131 0 -3.88 -0.3280 MIMAT0004890 mmu-miR-509-5p 266692 Cpne1 uacuaACGGUGUAA--GACCUCAu |||:|| | ||||||| guguaUGCUACCGUGCCUGGAGUa 2 18 587 610 [mm9:2:155898647-155898670:-] 0.5009 152 7 -21.81 -0.1546 MIMAT0004890 mmu-miR-509-5p 266692 Cpne1 uacuaacGGUGUAAGACCUCAu | | :| ||||||| uacaacuCAAGGUCCUGGAGUa 2 16 882 903 [mm9:2:155898354-155898375:-] 0.5006 147 7 -14.79 -0.3475 MIMAT0004892 mmu-miR-568 266692 Cpne1 cacACAUAU-GUAAA-UAUGUa | |||| :|||| ||||| uucUCUAUAUUAUUUCAUACAc 2 18 1465 1486 [mm9:2:155897771-155897792:-] 0.5077 128 0 -5.48 -1.0365 MIMAT0004892 mmu-miR-568 266692 Cpne1 caCACAUAUGUAAAU-AUGUa |||| :|| ||| |||| caGUGUUAGCAGUUAUUACAg 2 19 1358 1378 [mm9:2:155897879-155897899:-] 0.5095 126 0 -9.04 -0.1034 MIMAT0004893 mmu-miR-574-5p 266692 Cpne1 ugUGUGAGUGUGUGUG-UGUGAGu |:: |:|:| | | |||||| ucAUGGUUAUAAUCCCAACACUCa 2 22 1031 1054 [mm9:2:155898203-155898226:-] 0.5012 121 6 -16.72 -0.1758 MIMAT0004931 mmu-miR-466d-3p 266692 Cpne1 gauacacacgcACAUACAUAu | ||||||| uaaaaaauauaUCUAUGUAUc 2 11 1633 1653 [mm9:2:155897604-155897624:-] 0.5077 142 7 -4.19 -0.9869 MIMAT0004931 mmu-miR-466d-3p 266692 Cpne1 gauacacacgcacAUACAUau |||||| uuuuuauauuccaUAUGUAaa 3 9 1587 1607 [mm9:2:155897650-155897670:-] 0.5077 120 0 -3.35 -0.1107 MIMAT0004934 mmu-miR-872 266692 Cpne1 ggacuuGAUUGUUCAUUGGAa || : |||||||| cauuucCUUCUCAGUAACCUg 2 16 1486 1506 [mm9:2:155897751-155897771:-] 0.5077 147 7 -13.10 -0.5634 MIMAT0004938 mmu-miR-875-3p 266692 Cpne1 guaUCGGAGUCAUAAAAGUCc || |::|| ||||||| ugaAGAGUUGGU-UUUUCAGu 2 19 1308 1327 [mm9:2:155897930-155897949:-] 0.5095 152 7 -10.37 -0.5432 MIMAT0005292 mmu-miR-582-3p 266692 Cpne1 aacccAAGUCAACAAGUUGUCc ||:| | ||||||| ugcccUUUACCAGCUCAACAGu 2 18 755 776 [mm9:2:155898481-155898502:-] 0.5019 149 7 -10.25 -0.2674 MIMAT0005294 mmu-miR-467e* 266692 Cpne1 uaUAUCCACACACAUACAUAua | | | | | ||||||| uaAAAAAUAUAUCUAUGUAUca 3 21 1633 1654 [mm9:2:155897603-155897624:-] 0.5077 132 0 -3.88 -0.3280 MIMAT0005837 mmu-miR-1187 266692 Cpne1 aaUGUGUG-UAUGUGUGUGUGUAu |: :|| :|: :|||||||| cgAUUUACUGUGAUUACACACAUu 2 22 1282 1305 [mm9:2:155897952-155897975:-] 0.5097 152 7 -15.24 -0.7690 MIMAT0005838 mmu-miR-669j 266692 Cpne1 acAAACG-UACACUCAUAUACGu ||| | | | | ||||||| uuUUUACUUUUUUAAUAUAUGCu 2 21 622 644 [mm9:2:155898613-155898635:-] 0.5009 151 7 -6.31 -0.7130 MIMAT0005840 mmu-miR-669i 266692 Cpne1 cauACGUACACA-CAUAUACGu | | | | | ||||||| uuuUACUUUUUUAAUAUAUGCu 2 19 623 644 [mm9:2:155898613-155898634:-] 0.5009 141 7 -6.31 -0.7130 MIMAT0005854 mmu-miR-467g 266692 Cpne1 uaUAUACACACACAUACAUAu | | | | | ||||||| uaAAAAAUAUAUCUAUGUAUc 2 20 1633 1653 [mm9:2:155897604-155897624:-] 0.5077 147 7 -5.19 -0.9809 MIMAT0005854 mmu-miR-467g 266692 Cpne1 uauAUACACACACAUACAUau ||| | | |||||| uuuUAUAU-UCCAUAUGUAaa 3 19 1588 1607 [mm9:2:155897650-155897669:-] 0.5077 124 0 -3.35 -0.1107 MIMAT0007863 mmu-miR-1902 266692 Cpne1 uucaguacggaugacGUGGAGa |||||| uaaaauuaauauaucCACCUC- 2 8 1656 1676 [mm9:2:155897581-155897601:-] 0.5041 120 6 -8.90 -0.3478 MIMAT0007872 mmu-miR-1906 266692 Cpne1 ucgggACG-GAGUCCGACGACGu ||: || |||||||| uuauaUGUACUGCUGCUGCUGCu 2 18 107 129 [mm9:2:155899128-155899150:-] 0.5362 148 7 -20.32 -0.2226 MIMAT0007874 mmu-miR-1904 266692 Cpne1 ggaggGAGGUCUCCUC-GUCUUg :|:|||: || ||||| aggagUUUCAGGUCAGACAGAAc 2 18 1108 1130 [mm9:2:155898127-155898149:-] 0.5012 121 0 -18.43 -0.4359 MIMAT0007876 mmu-miR-1907 266692 Cpne1 ugGAGGUCUAGGAGACGACGAg :|::| || : |||||||| acUUUUAUAUGUACUGCUGCUg 2 21 103 124 [mm9:2:155899133-155899154:-] 0.5362 160 7 -19.08 -0.1763 MIMAT0007876 mmu-miR-1907 266692 Cpne1 ugGA-GGUCU--AGGAGACGA-CGAg || ::||| |||| |||| ||| ggCUGUUAGACUUCCUGUGCUAGCUc 2 21 471 496 [mm9:2:155898761-155898786:-] 0.5090 126 0 -24.37 -0.1183 MIMAT0009397 mmu-miR-1933-3p 266692 Cpne1 uaucAGUG-UGACUACCAGGACc |:|| ||| | ||||||| cauuUUACAACUCAAGGUCCUGg 2 19 877 899 [mm9:2:155898358-155898380:-] 0.5006 161 7 -21.64 -0.2024 MIMAT0009412 mmu-miR-1946a 266692 Cpne1 uuuUCACACACGGUGGUG-A-CGGG-CCGa | | | |||: :||: | |||| ||| uuuAAUAUAUGCUCUCAUAUAGCCCAGGCu 2 25 632 661 [mm9:2:155898596-155898625:-] 0.5009 122 0 -21.33 -0.1391 MIMAT0009416 mmu-miR-1949 266692 Cpne1 uugauACGACUGUAGGACC-AUAUc || ||:| || ||| |||| aagauUGGUGGC-UCAUGGUUAUAa 2 20 1019 1042 [mm9:2:155898215-155898238:-] 0.5013 125 0 -12.50 -0.1695 MIMAT0009419 mmu-miR-669m 266692 Cpne1 uauacaaACACACCUACAUAua | | | |||||| uaaaaaaUAUAUCUAUGUAUca 3 16 1633 1654 [mm9:2:155897603-155897624:-] 0.5077 123 0 -2.88 -0.3253 MIMAT0009431 mmu-miR-1958 266692 Cpne1 ugAAUGACGAAGGUG-AAAGGAu |||:| | | ||| |||||| uaUUAUUUCAUACACAUUUCCUu 2 21 1472 1494 [mm9:2:155897763-155897785:-] 0.5077 136 6 -13.27 -0.4693 MIMAT0009441 mmu-miR-1968 266692 Cpne1 ucAGG--UGGUAGGAAU-UGUC-GACGu ||| |||| |:||: ||| |||| caUCCUAACCA-CUUUGCCCAGACUGCc 2 23 845 871 [mm9:2:155898386-155898412:-] 0.5017 122 0 -19.33 -0.4320 MIMAT0009441 mmu-miR-1968 266692 Cpne1 ucaGGUGGUAGGAAUUGU-CGACGu ::| || :: | ||| ||||| gugUUAGCAGUUAUUACAGGCUGCc 2 22 1360 1384 [mm9:2:155897873-155897897:-] 0.5095 121 0 -12.95 -0.1802 MIMAT0009455 mmu-miR-1983 266692 Cpne1 ucUUUUGUACGAGGUCCACUc :|:| || | ||||||| auGAGAGAU--UGCAGGUGAu 2 20 1334 1352 [mm9:2:155897905-155897923:-] 0.5095 148 7 -15.46 -0.4488 MIMAT0009456 mmu-miR-1839-5p 266692 Cpne1 guUCUGGACAAGAUAGAUGGAa | | :| | |||| |||| auAAAAUUAAUAUAUCCACCUc 2 21 1655 1676 [mm9:2:155897581-155897602:-] 0.5041 124 0 -7.40 -0.1061 MIMAT0011214 mmu-miR-2138 266692 Cpne1 uaaggCGGUUCGGGCAAGGGAa |:: || | ||||||| ccagaGUUUAG-CAGUUCCCUu 2 18 1248 1268 [mm9:2:155897989-155898009:-] 0.5057 147 7 -18.00 -0.3502 MIMAT0011217 mmu-miR-2141 266692 Cpne1 uugaaaagacuGUGGAGga |||||| auuaauauaucCACCUC-- 3 9 1660 1676 [mm9:2:155897581-155897597:-] 0.5041 120 0 -8.21 -0.2943 MIMAT0012773 mmu-miR-767 266692 Cpne1 acgagUCUGUUGGUAC-CACGu | :||| |||| |||| uuuaaAAGCAAACAUGUGUGCu 2 17 1134 1155 [mm9:2:155898102-155898123:-] 0.5057 124 0 -13.09 -0.3656 MIMAT0012774 mmu-miR-664 266692 Cpne1 auccgaccccUCAU-UUACUUAu | || ||||||| gcuuuuuuuuAAUAUAAUGAAUg 2 13 783 805 [mm9:2:155898452-155898474:-] 0.5029 143 7 -6.25 -0.9647 MIMAT0015644 mmu-miR-1186b 266692 Cpne1 caCCACGUACGGAAAUUAGGGu || |||| :| ||||||| guGGCUCAUGGUUAUAAUCCCa 2 21 1026 1047 [mm9:2:155898210-155898231:-] 0.5012 164 7 -24.61 -0.4968 MIMAT0000124 mmu-miR-15b 266692 Cpne1 acAUUUGGUACUAC-ACGACGAu || :: || || ||||||| uaUAUGUACUGCUGCUGCUGCUc 2 21 108 130 [mm9:2:155899127-155899149:-] 0.5362 151 7 -16.46 -0.1625 MIMAT0000124 mmu-miR-15b 266692 Cpne1 acAUUUGGUACUACACGA-CGAu ||:||: | |||||| ||| guUAGACU-UCCUGUGCUAGCUc 2 21 475 496 [mm9:2:155898761-155898782:-] 0.5090 126 0 -14.37 -0.1183 MIMAT0000126 mmu-miR-27b 266692 Cpne1 cgUCUUGAA--UCGGUGACACUu |||: || | ::||||||| acAGAGAUUCGAUUUACUGUGAu 2 20 1273 1295 [mm9:2:155897962-155897984:-] 0.5097 154 7 -18.64 -0.7306 MIMAT0000134 mmu-miR-124 266692 Cpne1 ccGUAA--GUGGCGCACGGAAu |||| :|::| ||||||| ugCAUUUAUAUUGGGUGCCUUa 2 19 1170 1191 [mm9:2:155898066-155898087:-] 0.5102 157 7 -23.28 -0.4617 MIMAT0000146 mmu-miR-134 266692 Cpne1 ggggAGACCAGU-UGGUCAGUGu ||| ||: :||||||| uaugUCUAUUCGCUUCAGUCACa 2 19 298 320 [mm9:2:155898937-155898959:-] 0.4997 149 7 -19.82 -1.0154 MIMAT0000148 mmu-miR-136 266692 Cpne1 gguaguaguuUUGUUUAC-CUCa |:|||||| ||| uguaagagguAGCAAAUGAGAGa 2 13 428 450 [mm9:2:155898807-155898829:-] 0.5090 120 0 -11.82 -0.6065 MIMAT0000151 mmu-miR-140 266692 Cpne1 gauGGUAUCCCAU-U----UUGGUGAc ::||||| | | ||||||| acuUUAUAGGACACAUCCUAACCACUu 2 20 832 858 [mm9:2:155898399-155898425:-] 0.5017 141 7 -15.82 -0.4206 MIMAT0000153 mmu-miR-141 266692 Cpne1 gguagaaAUGGUCUGUCACAAu ||:: | ||||||| caggugaUAUUUG-CAGUGUUa 2 16 1345 1365 [mm9:2:155897892-155897912:-] 0.5095 145 7 -11.69 -0.4719 MIMAT0000165 mmu-miR-155 266692 Cpne1 uggggAU-AGUGU--UAAUCGU-AAUu || |::|| :|||||| ||| ggugaUAUUUGCAGUGUUAGCAGUUAu 2 19 1347 1373 [mm9:2:155897884-155897910:-] 0.5095 120 0 -8.78 -0.1584 MIMAT0000211 mmu-miR-182 266692 Cpne1 gccacacucaagAUGGUAACGGUUu | :::||||||| gcuggcccuacaUUUUGUUGCCAAg 2 14 659 683 [mm9:2:155898574-155898598:-] 0.5009 145 7 -15.20 -0.1741 MIMAT0000215 mmu-miR-186 266692 Cpne1 ucgGGUUUUCCUCU-UAAGAAAc ||||: | : | ||||||| ggaCCAAGCGUGCACAUUCUUUc 2 20 65 87 [mm9:2:155899170-155899192:-] 0.5066 154 7 -10.20 -0.1126 MIMAT0000224 mmu-miR-194 266692 Cpne1 agguguaccucaacGACAAUGu ||||||| uauuuuucccucauCUGUUACu 2 9 1557 1578 [mm9:2:155897679-155897700:-] 0.5077 140 7 -11.00 -0.8079 MIMAT0000225 mmu-miR-195 266692 Cpne1 cgguUAUA-AAGAC-ACGACGAu |||| | ||| ||||||| uuuuAUAUGUACUGCUGCUGCUg 2 18 105 127 [mm9:2:155899130-155899152:-] 0.5362 159 7 -18.10 -0.1040 MIMAT0000225 mmu-miR-195 266692 Cpne1 cgGUUAUAAAGACACGA-CGAu :|: || ||||||| ||| guUAGACUUCCUGUGCUAGCUc 2 20 475 496 [mm9:2:155898761-155898782:-] 0.5090 127 0 -15.44 -0.1195 MIMAT0000233 mmu-miR-200b 266692 Cpne1 aguAGUAAUGGUCC---GUCAUAAu | | |: |||| ||||||| uccUAAAUG-CAGGUAUCAGUAUUa 2 20 972 995 [mm9:2:155898262-155898285:-] 0.5010 144 7 -14.82 -0.9949 MIMAT0000236 mmu-miR-203 266692 Cpne1 gaucaccAGGAUUUGUAAAGUg |:|| ||||||| gugcacaUUCUUUCCAUUUCAu 2 16 74 95 [mm9:2:155899162-155899183:-] 0.5066 147 7 -11.42 -0.5578 MIMAT0000236 mmu-miR-203 266692 Cpne1 gaUCACCAGGAUUUGUA-AAGUg | || |:: | :||| |||| ugAAUGAUUUAAUGCAUGUUCAu 2 21 800 822 [mm9:2:155898435-155898457:-] 0.5029 120 0 -7.26 -0.4599 MIMAT0000382 mmu-miR-34b-5p 266692 Cpne1 uguUAGUCGAUUAAUGU--GACGGa | |||:| |||||| ||||| guuAGCAGUU-AUUACAGGCUGCCu 2 21 1362 1385 [mm9:2:155897872-155897895:-] 0.5095 122 0 -21.24 -0.1903 MIMAT0000519 mmu-miR-200a 266692 Cpne1 uguaGCAAUGGUCUGUCACAAu :| ||:: | ||||||| caggUGAUAUUUG-CAGUGUUa 2 19 1345 1365 [mm9:2:155897892-155897912:-] 0.5095 148 7 -13.68 -0.4685 MIMAT0000526 mmu-miR-15a 266692 Cpne1 gugUUUGGUA--AUAC---ACGACGAu | ||: | |||| ||||||| uugAUACUUUUAUAUGUACUGCUGCUg 2 20 98 124 [mm9:2:155899133-155899159:-] 0.5362 145 7 -16.04 -0.1796 MIMAT0000526 mmu-miR-15a 266692 Cpne1 guGUUUGGUAAUACACGA-CGAu :|:||: | |||||| ||| guUAGACU-UCCUGUGCUAGCUc 2 21 475 496 [mm9:2:155898761-155898782:-] 0.5090 122 0 -14.59 -0.1183 MIMAT0000527 mmu-miR-16 266692 Cpne1 gcgguUAUAAAUGCACGACGAu |||| ||| ||||||| cuuuuAUAUGUAC-UGCUGCUg 2 18 104 124 [mm9:2:155899133-155899153:-] 0.5362 163 7 -16.80 -0.1606 MIMAT0000528 mmu-miR-18a 266692 Cpne1 gauaGACGUGAUCUA-CGUGGAAu |||| ||: | ||||||| uugcCUGC-CUGCCUGGCACCUUu 2 20 138 160 [mm9:2:155899097-155899119:-] 0.5200 152 7 -21.46 -0.1080 MIMAT0000534 mmu-miR-26b 266692 Cpne1 uggaUAGGACUUAAUGA-ACUu ||:| || ||||| ||| agagAUUC-GAUUUACUGUGAu 2 18 1275 1295 [mm9:2:155897962-155897982:-] 0.5097 123 0 -9.35 -0.5970 MIMAT0000537 mmu-miR-27a 266692 Cpne1 cgcCUUGAA--UCGGUGACACUu ||: || | ::||||||| acaGAGAUUCGAUUUACUGUGAu 2 19 1273 1295 [mm9:2:155897962-155897984:-] 0.5097 149 7 -13.23 -0.7306 MIMAT0000539 mmu-miR-92a 266692 Cpne1 guCCGGCCCU-GUU--CACGU-UAu ||| |||| ||| ||||| || agGGCAGGGACCAAGCGUGCACAUu 2 20 58 82 [mm9:2:155899175-155899199:-] 0.4609 129 0 -19.68 -0.2200 MIMAT0000548 mmu-miR-322 266692 Cpne1 agguuuUGUACUUAACGACGAc |:||| | ||||||| acuuuuAUAUGUACUGCUGCUg 2 17 103 124 [mm9:2:155899133-155899154:-] 0.5362 160 7 -20.41 -0.1746 MIMAT0004651 mmu-miR-340-5p 266692 Cpne1 uuagucagaguaacGAAAUAUu ||||||| ucauuuggggaaaaCUUUAUAg 2 9 819 840 [mm9:2:155898417-155898438:-] 0.5029 140 7 -7.10 -0.2190 MIMAT0000648 mmu-miR-10a 266692 Cpne1 gugUUUAAG-CCUAGAUGUCC-CAu |:|| | || :|||||| || uagAGAUGCUAGAAUUACAGGUGUa 2 21 567 591 [mm9:2:155898666-155898690:-] 0.5009 123 0 -15.93 -0.5454 MIMAT0000652 mmu-miR-25 266692 Cpne1 agUCUGGCUCU-GUU--CACGU-UAc :|:| |:|| ||| ||||| || caGGGCAGGGACCAAGCGUGCACAUu 2 21 57 82 [mm9:2:155899175-155899200:-] 0.4609 122 0 -16.92 -0.2161 MIMAT0000657 mmu-miR-200c 266692 Cpne1 agguaguaaugggccGUCAUAAu ||||||| ccuaaaugcagguauCAGUAUUa 2 9 973 995 [mm9:2:155898262-155898284:-] 0.5010 140 7 -11.99 -0.9949 MIMAT0000704 mmu-miR-361 266692 Cpne1 cauggggaccucuaAGACUAUu ||||||| ggggugaucugaccUCUGAUAa 2 9 1394 1415 [mm9:2:155897842-155897863:-] 0.4983 140 7 -15.88 -0.1162 MIMAT0000739 mmu-miR-375 266692 Cpne1 agugcGCUCGGCUUG-CUUGUUu | :|:| :|| |||||| aguuuCAGGUCAGACAGAACAAc 2 18 1111 1133 [mm9:2:155898124-155898146:-] 0.5012 121 6 -12.25 -0.4433 MIMAT0000741 mmu-miR-377 266692 Cpne1 ugUUUUCAACGG-----AAAC-ACACUa :|::|||||: |||| ||||| agGAGGGUUGCUCUGAGUUUGAUGUGAa 2 21 1067 1094 [mm9:2:155898163-155898190:-] 0.5012 123 0 -17.12 -0.6222 MIMAT0000747 mmu-miR-382 266692 Cpne1 gcUUAGGUGGUGCUUGUUGAAg ::|| : || ||||||||| caGGUCAGACA-GAACAACUUu 2 21 1116 1136 [mm9:2:155898121-155898141:-] 0.5012 158 7 -16.76 -0.5244 MIMAT0001092 mmu-miR-376b 266692 Cpne1 uucaccuacaaggAGAUACua |||||| uuuaaaaaauauaUCUAUGua 3 9 1631 1651 [mm9:2:155897606-155897626:-] 0.5077 120 0 -6.45 -0.1619 MIMAT0001537 mmu-miR-429 266692 Cpne1 ugccgUAAUGGUC-U-GUCAUAAu | |:| :| | ||||||| uccuaAAUGCAGGUAUCAGUAUUa 2 18 972 995 [mm9:2:155898262-155898285:-] 0.5010 143 7 -13.12 -0.9949 MIMAT0003169 mmu-miR-539 266692 Cpne1 ugugugguuccuAUUAAAGAGg | ||||||| ucuaguuuccauUUAUUUCUCu 2 11 1449 1470 [mm9:2:155897787-155897808:-] 0.5037 142 7 -10.59 -1.1016 MIMAT0003183 mmu-miR-376c 266692 Cpne1 ugcacUUUAAAGGAGAUACAa ||| | : ||||||| uuuaaAAAAUAUAUCUAUGUa 2 17 1631 1651 [mm9:2:155897606-155897626:-] 0.5077 152 7 -7.71 -1.2479 MIMAT0003727 mmu-miR-374 266692 Cpne1 gugaauCGUCCA-A--CAUAAUAUa |||||| | |||||||| cuaaauGCAGGUAUCAGUAUUAUAu 2 17 974 998 [mm9:2:155898259-155898283:-] 0.5010 158 7 -16.58 -0.4759 MIMAT0003729 mmu-miR-216b 266692 Cpne1 aguguaAACGGACGUCUCUAAa || || |||||||| guucccUUCCCAACAGAGAUUc 2 17 1261 1282 [mm9:2:155897975-155897996:-] 0.5098 156 7 -13.45 -0.1432 MIMAT0003729 mmu-miR-216b 266692 Cpne1 aguguaaacggACGUCUCUAAa || ||||||| caguauggaaaUG-AGAGAUUg 2 12 1324 1344 [mm9:2:155897913-155897933:-] 0.5095 141 7 -9.58 -0.1449 MIMAT0003450 mmu-miR-488 266692 Cpne1 cuggUUCU-UUGU-CGGAAAGUu |||| | || ||||||| aguaAAGAUAUCACUCCUUUCAa 2 18 181 203 [mm9:2:155899054-155899076:-] 0.5268 151 7 -14.27 -1.0845 MIMAT0003453 mmu-miR-497 266692 Cpne1 auguuUGGUGUCACACGACGAc ||::| | ||||||| uauguACUGCUG-CUGCUGCUc 2 18 110 130 [mm9:2:155899127-155899147:-] 0.5362 147 7 -16.04 -0.1594 MIMAT0003453 mmu-miR-497 266692 Cpne1 auGUUUGGUGUCACACGA-CGAc :|:||: | |||||| ||| guUAGACUUC-CUGUGCUAGCUc 2 21 475 496 [mm9:2:155898761-155898782:-] 0.5090 122 0 -14.55 -0.1183 MIMAT0004855 mmu-miR-876-3p 266692 Cpne1 acuuaaUGAAACAUUUGGUGAu || | | ||||||| uaggacACAUCCU-AACCACUu 2 17 838 858 [mm9:2:155898399-155898419:-] 0.5017 142 7 -12.23 -0.3873 MIMAT0004858 mmu-miR-18b 266692 Cpne1 gauuGUCGUGAUCUA-CGUGGAAu | || ||: | ||||||| uugcCUGC-CUGCCUGGCACCUUu 2 20 138 160 [mm9:2:155899097-155899119:-] 0.5200 144 7 -16.93 -0.1080 MIMAT0004869 mmu-miR-421 266692 Cpne1 cgcgggUUAAUUACAGACAA-CUa :| ||| | ||||| || guuuuaGAGUAAGGGCUGUUAGAc 2 18 458 481 [mm9:2:155898776-155898799:-] 0.5090 121 0 -8.15 -0.1473 MIMAT0004896 mmu-miR-590-3p 266692 Cpne1 ugAUCGAAUAUGUAUUUUAAu || : |||::||||||| uaUAUUCCAUAUGUAAAAUUa 2 20 1591 1611 [mm9:2:155897646-155897666:-] 0.5077 159 7 -7.58 -0.9727 MIMAT0004896 mmu-miR-590-3p 266692 Cpne1 ugAUCGA-AUAUG--UAUUUUAAu || || |:||: |||||||| uaUAUCUAUGUAUCAAUAAAAUUa 2 20 1640 1663 [mm9:2:155897594-155897617:-] 0.5077 157 7 -8.30 -1.0894 MIMAT0004899 mmu-miR-92b 266692 Cpne1 ccUCCGGCCCUG---CUCACGU-UAu :||| ||||| | ||||| || caGGGCAGGGACCAAGCGUGCACAUu 2 21 57 82 [mm9:2:155899175-155899200:-] 0.4609 127 0 -19.54 -0.2200 MIMAT0004941 mmu-miR-544 266692 Cpne1 cucgaacGAUUUUUACG-UCUUa :||:|:|||| |||| ggcaaccUUAGAGAUGCUAGAAu 2 16 559 581 [mm9:2:155898676-155898698:-] 0.5009 127 0 -15.32 -0.3134 MIMAT0004943 mmu-miR-653 266692 Cpne1 gucaucUCUAACAAAGU-UGUg | ||| ||||| ||| uucucuAUAUUAUUUCAUACAc 2 16 1465 1486 [mm9:2:155897771-155897792:-] 0.5077 123 0 -7.70 -1.0420

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G054790 Cpne1 Mus musculus 266692 19536157 0 0 R50042; MOUSE$CPNE1_01; Binding factors: mmu-miR-101a-3p , mmu-miR-101b-3p // 0 0 R50048; MOUSE$CPNE1_02; Binding factors: mmu-miR-103-3p , mmu-miR-107-3p , mmu-miR-15a-5p , mmu-miR-15b-5p , mmu-miR-16-5p , mmu-miR-1906 , mmu-miR-1907 , mmu-miR-195a-5p , mmu-miR-322-5p , mmu-miR-497a-5p , mmu-miR-761

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Cpne1 mcmv-miR-m59-1 beg:209 end:220 pic:3' GACTGCCAGCTCCGTGACGATT 5'& |||||||. &5' --------------ACTGCTAG 3' Cpne1 mmu-miR-148astar beg:1194 end:1205 pic:3' TCAGCCTCACAGAGTCTTGAAA 5'& |||||||| &5' -------------CAGAACTT- 3' Cpne1 mmu-miR-216b beg:1267 end:1282 pic:3' AGTGTAAACGGACGTCTCTAAA 5'& || |||||||| &5' ---------CCAACAGAGATT- 3' Cpne1 mmu-miR-28 beg:959 end:976 pic:3' GAGTTATCTGACACTCGAGGAA 5'& .|| | |||||||| &5' ------GGAGGG-GAGCTCCT- 3' Cpne1 mmu-miR-18astar beg:52 end:65 pic:3' GTCTTCCTCGTGAATCCCGTCA 5'& || ||||||| &5' -----------CTCAGGGCAG- 3' Cpne1 mmu-miR-154 beg:1401 end:1420 pic:3' GCTTCCGTTGT-GCCTATTGGAT 5'& .|| | ||||||||. &5' -------GACCTCTGATAACCTG 3' Cpne1 mmu-miR-376cstar beg:1663 end:1674 pic:3' ATTTGTATCTTCCTTATAGGTG 5'& |||||||| &5' --------------ATATCCAC 3' Cpne1 mmu-miR-539 beg:1454 end:1471 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& ||| |||||||. &5' -----CCATTT---ATTTCTCT 3' Cpne1 mmu-miR-295star beg:1086 end:1101 pic:3' CTTCACACGGGGTGTAAACTCA 5'& |||| ||||||| &5' ----TGTGA-----ATTTGAG- 3' Cpne1 mmu-miR-362-5p beg:274 end:293 pic:3' TAAGTGTGGATCCAAGGTTCCTAA 5'& ||| |.|||||||| &5' ------ACCCCA--TTCAAGGATT 3' Cpne1 mmu-miR-466b-5p beg:1288 end:1306 pic:3' GTACATGTACATGTGTGTGTAG 5'& .|| .||||||||. &5' -------GTGATTACACACATT 3' Cpne1 mmu-miR-466c-5p beg:1288 end:1306 pic:3' ATACATGTACGTGTGTGTGTAG 5'& .|| .||||||||. &5' -------GTGATTACACACATT 3' Cpne1 mmu-miR-466e-5p beg:1288 end:1306 pic:3' ATACATGTACATGTGTGTGTAG 5'& .|| .||||||||. &5' -------GTGATTACACACATT 3' Cpne1 mmu-miR-1983 beg:1333 end:1352 pic:3' TCTTTTGTACGAGGTCCACTC 5'& ||.|. .| ||||||| &5' -GAGAGA---TTGCAGGTGA- 3' Cpne1 mmu-miR-412 beg:1335 end:1352 pic:3' GCCGATCAC-CTG--GTCCACTT 5'& | ||. ||||||| &5' --------GAGATTGCAGGTGA- 3' Cpne1 mmu-miR-200c beg:976 end:996 pic:3' AGGTAGTAATGGGCC---GTCATAAT 5'& |.| || |||||||| &5' --------TGCA-GGTATCAGTATTA 3' Cpne1 mmu-miR-200b beg:978 end:996 pic:3' AGTAGTAATGGTCC---GTCATAAT 5'& |||| |||||||| &5' ----------CAGGTATCAGTATTA 3' Cpne1 mmu-miR-429 beg:980 end:996 pic:3' TGCCGTAATGGTCTGTCATAAT 5'& ||.|| |||||||| &5' --GGTAT-------CAGTATTA 3' Cpne1 mmu-miR-141 beg:1349 end:1366 pic:3' GGTAGAAATGGTCTGTCACAAT 5'& ||.. .|||||||| &5' -------TATTT-GCAGTGTTA 3' Cpne1 mmu-miR-200a beg:1349 end:1366 pic:3' TGTAGCAATGGTCTGTCACAAT 5'& ||.. .|||||||| &5' -------TATTT-GCAGTGTTA 3' Cpne1 mmu-miR-203 beg:78 end:96 pic:3' GATCACCAGGATTTGTAAAGTG 5'& |.|| |||||||. &5' -------TTCTTTCCATTTCAT 3' Cpne1 mmu-miR-1906 beg:110 end:129 pic:3' TCGGGACGGAGTCCGACGACGT 5'& | ||||. |||||||| &5' -GTACTGCT----GCTGCTGC- 3' Cpne1 mmu-miR-509-5p beg:885 end:904 pic:3' TACTAACGGTG-TAAGACCTCAT 5'& .|| .| |||||||| &5' -------TCAAGGTCCTGGAGTA 3' Cpne1 mmu-miR-337-3p beg:376 end:401 pic:3' TCCGTAGTATAT--CCTCGACTT 5'& .|||. ||.||||| &5' GGGCGAGCTGAACTGGGGCTGA- 3' Cpne1 mmu-miR-18b beg:141 end:160 pic:3' GATTGTCGTGATCTA-CGTGGAAT 5'& || ||. ||||||| &5' ------GC-CTGCCTGGCACCTT- 3' Cpne1 mmu-miR-133a beg:56 end:73 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& || ||||||||. &5' -----GGGCA---GGGACCAAG 3' Cpne1 mmu-miR-133b beg:56 end:73 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& || ||||||||. &5' -----GGGCA---GGGACCAAG 3' Cpne1 mmu-miR-453 beg:548 end:567 pic:3' ACGTTCGAGTGATACTCCGTTGGA 5'& ||. || |||||||| &5' --------CATCCTGCGGCAACCT 3' Cpne1 mmu-miR-709 beg:138 end:158 pic:3' AGGA-GGACGGAGACGGAGG 5'& ||| ||||||| || || &5' -CCTGCCTGCCTG-GCA-CC 3' Cpne1 mmu-miR-709 beg:850 end:875 pic:3' AGGAG-GACGGA---GACGGAGG 5'& || | .|||| ||||||.. &5' -CCACTTTGCCCAGACTGCCTTT 3' Cpne1 mmu-miR-872 beg:1488 end:1506 pic:3' GGACTTGATTGTTCATTGGAA 5'& ||| || |||||||| &5' CCTT--CTC---AGTAACCT- 3' Cpne1 mmu-miR-124 beg:1175 end:1192 pic:3' CCGTAAGTGGCGCACGGAAT 5'& .|..| |||||||| &5' ------TATTGGGTGCCTTA 3' Cpne1 mmu-miR-2138 beg:1250 end:1269 pic:3' TAAGGCGGTTCGGGCAAGGGAA 5'& |. ||| |||||||| &5' -----GTTTAGCA-GTTCCCTT 3' Cpne1 mcmv-miR-m107-1-5p beg:1385 end:1403 pic:3' CCACTGAGC-TCTGCTCACTGGC 5'& .| ||| |.||||.| &5' -------TGTAGAGGGGTGATC- 3' Cpne1 mcmv-miR-m22-1 beg:499 end:518 pic:3' ACCGGAGCCATGCCTGCCCCTT 5'& |||| || .||||| &5' ---CCTCTGTTTCT-TGGGGA- 3' Cpne1 mcmv-miR-m22-1 beg:810 end:831 pic:3' ACCGGAGCCATGCCTGCCCCTT 5'& || || .|||||| &5' --GCAT--GTTCATTTGGGGAA 3' Cpne1 mcmv-miR-m59-1 beg:110 end:121 pic:3' GACTGCCAGCTCCGTGACGATT 5'& |.||||||. &5' ------------GTACTGCTG- 3' Cpne1 mmu-let-7a beg:1195 end:1213 pic:3' TTGATATGTTGGATGATGGAGT 5'& | |||.||||.|||| &5' ------AGAACTTACTGCCTC- 3' Cpne1 mmu-let-7a beg:729 end:750 pic:3' TTGATATGTTGGATGATGGAGT 5'& .|.|||| |.| |.||||| &5' GATTATA-AGCA---TGCCTCA 3' Cpne1 mmu-let-7b beg:732 end:750 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& .|.|| | |.||||| &5' -----TATAAGCA--TGCCTCA 3' Cpne1 mmu-let-7b beg:1190 end:1213 pic:3' TTGGT-GTGTTGGATGATGGAGT 5'& ||| || |||.||||.|||| &5' --CCACCAGAACTTACTGCCTC- 3' Cpne1 mmu-let-7c beg:1192 end:1213 pic:3' TTGGTATGTTGGATGATGGAGT 5'& |||| |||.||||.|||| &5' -ACCAG--AACTTACTGCCTC- 3' Cpne1 mmu-let-7c beg:732 end:750 pic:3' TTGGTATGTTGGATGATGGAGT 5'& ||.|| | |.||||| &5' -----TATAAGCA--TGCCTCA 3' Cpne1 mmu-let-7d beg:1197 end:1213 pic:3' TTGATACGTTGGATGATGGAGA 5'& |||.||||.|||| &5' --------AACTTACTGCCTC- 3' Cpne1 mmu-let-7d beg:852 end:875 pic:3' TTGATACGTTGGA-TGATGGAGA 5'& ||| ||| || |||.|||.| &5' -ACTTTGC--CCAGACTGCCTTT 3' Cpne1 mmu-let-7e beg:1197 end:1219 pic:3' TTGATATGTTGGAGGATGGAGT 5'& |||| ||| .|||||| |.|. &5' AACT-TACTGCCTCCT-CTTT- 3' Cpne1 mmu-let-7f beg:732 end:750 pic:3' TTGATATGTTAGATGATGGAGT 5'& ||.|| |.||||| &5' -----TATAAGCA--TGCCTCA 3' Cpne1 mmu-let-7g beg:1196 end:1213 pic:3' TTGACATGTTTG-ATGATGGAGT 5'& .||| ||||.|||| &5' --------GAACTTACTGCCTC- 3' Cpne1 mmu-let-7g beg:1501 end:1525 pic:3' TTGACA--TGTTTGATGATGGAGT 5'& |||| |||||||. ||. |.| &5' --CTGTTCACAAACTG-TATGTTA 3' Cpne1 mmu-let-7g beg:732 end:750 pic:3' TTGACATGTTTGATGATGGAGT 5'& ||.||.| |.||||| &5' -----TATAAGCA--TGCCTCA 3' Cpne1 mmu-miR-106a beg:136 end:157 pic:3' GATGGACGTGACA-ATCGTGAAAC 5'& |.||||| ||| |.|||| &5' -TGCCTGC-CTGCCTGGCAC---- 3' Cpne1 mmu-miR-106b beg:1350 end:1372 pic:3' TAGACGTGACAGTCGTGAAAT 5'& ||.|||| |||.|||| || &5' ATTTGCAGTGTTAGCAGTT-- 3' Cpne1 mmu-miR-1 beg:69 end:95 pic:3' TATGTATG---AAGAAATGTAAGGT 5'& .|.|.| |||||| ||||.|| &5' --GCGTGCACATTCTTTCCATTTCA 3' Cpne1 mmu-miR-1186b beg:1029 end:1048 pic:3' CACCACGTACGGAAATTAGGGT 5'& |||| .| |||||||| &5' ------CATGGTTATAATCCCA 3' Cpne1 mmu-miR-1188 beg:27 end:53 pic:3' AGGAC-CGG--GTTGGAGTGTGGT 5'& |||| ||| ||.||| .| ||| &5' TCCTCAGCCTGCAGCCT-GCTCCA 3' Cpne1 mmu-miR-1193 beg:1386 end:1405 pic:3' CTATCATTTTGCCCACTGGAT 5'& |||.|. ||||||.||. &5' ----GTAGAG-GGGTGATCTG 3' Cpne1 mmu-miR-1 beg:1580 end:1600 pic:3' TATGTATGAAGAAATGTAAGGT 5'& |||. |.||||.|||||| &5' ---CATG--TTTTTATATTCCA 3' Cpne1 mmu-miR-1 beg:860 end:884 pic:3' TATGTATGAA--GAAATGTAAGGT 5'& || ||| .||||||||..| &5' ---CAGACTGCCTTTTACATTTTA 3' Cpne1 mmu-miR-122 beg:64 end:85 pic:3' GTTTGTGGTA---ACAGTGTGAGGT 5'& |||| || ||||.||. &5' -----ACCAAGCGTG-CACATTCT- 3' Cpne1 mmu-miR-1224 beg:1425 end:1448 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& ||.| |.||||||| .||||. &5' CTTC-CTTCCCCAGATCTCAT 3' Cpne1 mmu-miR-124star beg:390 end:412 pic:3' TAGTTCCAGGC-GACACTTGTGC 5'& ..|| |.| || |||||||| &5' ---GGGG-CTGACTATGAACACG 3' Cpne1 mmu-miR-125b-3p beg:672 end:693 pic:3' TCGAGGGTTCTCGGATTGGGCA 5'& |.| |||||. ||||..| &5' -GTTGCCAAGGA--TAACTTG- 3' Cpne1 mmu-miR-128 beg:1273 end:1295 pic:3' TTTCTCT-GGCCAAGTGACACT 5'& ||||| .|| ||.||||||| &5' --AGAGATTCGATTTACTGTGA 3' Cpne1 mmu-miR-129-3p beg:454 end:475 pic:3' TACGAAAAACCCCATTCCCGAA 5'& |||.||| | ||||||||| &5' ATGTTTTA--GAGTAAGGGCT- 3' Cpne1 mmu-miR-135a beg:158 end:182 pic:3' AGTGTATCCTTATTTTTC-GGTAT 5'& |||. ||||| |.|||| |.| &5' TCATTCAGGAA-AGAAAGACTA-- 3' Cpne1 mmu-miR-135b beg:158 end:182 pic:3' AGTGTATCCTTACTTTTCGGTAT 5'& |||. ||||| |||| |.| &5' TCATTCAGGAAAGAAAGACTA-- 3' Cpne1 mmu-miR-138 beg:753 end:770 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& ||| | .||||||| &5' --GCC-------CTTTACCAGCT 3' Cpne1 mmu-miR-139-5p beg:1372 end:1394 pic:3' GACCTCTGTGC-ACGT--GACATCT 5'& ||| | ||| ||||||| &5' ------ACAGGCTGCCTTCTGTAGA 3' Cpne1 mmu-miR-141star beg:401 end:421 pic:3' AGGTTGTGACGTGACCTTCTAC 5'& . ||||| ||||||.|| &5' -TGAACACGA---TGGAAGGTG 3' Cpne1 mmu-miR-143 beg:603 end:624 pic:3' CTCGATGTCACGAAGTAGAGT 5'& ||| ||.||| ||| ||.|. &5' GAG-TATAGT-CTTGATTTT- 3' Cpne1 mmu-miR-145 beg:891 end:910 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& || |||||| |.||||| &5' --GG--TCCTGGAGTAGCTGGA- 3' Cpne1 mmu-miR-146bstar beg:1049 end:1075 pic:3' TGGTCTT--GACTCAGGGATCCCG 5'& .||||| ||||| | ||||. &5' -TCAGAAGTCTGAGGCAGGAGGGT 3' Cpne1 mmu-miR-151-3p beg:528 end:550 pic:3' GGAGTTCC-TCGGA-GTCAGATC 5'& || ||.| .|||| ||||.|| &5' CC-CAGGCTGGCCTGCAGTTTA- 3' Cpne1 mmu-miR-154 beg:767 end:787 pic:3' GCTTCCGTTGTGC--CTATTGGAT 5'& ||||| ||||.|.| &5' ------CAACAGTTTGATAGCTT- 3' Cpne1 mmu-miR-15a beg:1138 end:1159 pic:3' GTGTTTGGTAATACACGACGAT 5'& .||||| |.|||||||.| &5' -GCAAACA--TGTGTGCTGTT- 3' Cpne1 mmu-miR-15b beg:107 end:124 pic:3' ACATTTGGTACTACACGACGAT 5'& .||| |||||||. &5' -------TATGTACTGCTGCTG 3' Cpne1 mmu-miR-15b beg:1143 end:1159 pic:3' ACATTTGGTACTACACGACGAT 5'& |||| |||||||.| &5' -------CATG-TGTGCTGTT- 3' Cpne1 mmu-miR-16 beg:106 end:125 pic:3' GCGGTTATAAATGCACGACGAT 5'& |||| ||| |||||||. &5' -----ATATGTAC-TGCTGCTG 3' Cpne1 mmu-miR-16 beg:1138 end:1159 pic:3' GCGGTTATAAATGCACGACGAT 5'& || |..||||||.| &5' -GCAAACA--TGTGTGCTGTT- 3' Cpne1 mmu-miR-17star beg:1371 end:1393 pic:3' GATGTTC-ACGGGAGTGACGTCA 5'& ||||.| ||||.|| ||.|| &5' -TACAGGCTGCCTTC--TGTAG- 3' Cpne1 mmu-miR-182 beg:663 end:682 pic:3' GCCACACTCAAGATGG----TAACGGTTT 5'& |||| .||||||| &5' -----------CTACATTTTGTTGCCAA- 3' Cpne1 mmu-miR-184 beg:480 end:502 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& .||| | |||.|||| &5' -TCCTGTGCTAG-CTCTGTCC- 3' Cpne1 mmu-miR-186star beg:497 end:517 pic:3' GGGTTTTTTAAGTGGAATCCCG 5'& ||| .||. |||.||| &5' CCCTCT--GTTT--CTTGGGG- 3' Cpne1 mmu-miR-1892 beg:1420 end:1443 pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& .|| |||.|| ||||||.|| &5' GTCA--CCTTCCTTCCCCAGAT 3' Cpne1 mmu-miR-1894-5p beg:948 end:968 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& |||| .||||||.| &5' ----GCAGACTG-GGGGGAGGG 3' Cpne1 mmu-miR-1896 beg:1262 end:1280 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& |||. |||| |||||| &5' --CCTT-CCCAA---CAGAGA- 3' Cpne1 mmu-miR-1897-5p beg:191 end:205 pic:3' GGGGGAGAAAGAGGTAGGTTTC 5'& |||| |.|||| &5' ----------CTCCTTTCAAA- 3' Cpne1 mmu-miR-1898 beg:223 end:244 pic:3' CTAGGGGACACTTGGAACTGGA 5'& || .|.||||||| &5' ----CCACACTTGCTTTGACCT 3' Cpne1 mmu-miR-18a beg:139 end:160 pic:3' GATAGACGTGATCTA-CGTGGAAT 5'& |||| ||. ||||||| &5' ----CTGC-CTGCCTGGCACCTT- 3' Cpne1 mmu-miR-190 beg:1635 end:1655 pic:3' TGGATTATATAGTTTGTATAGT 5'& |||||||| |..||||| &5' ----AATATATCT-ATGTATCA 3' Cpne1 mmu-miR-1902 beg:140 end:161 pic:3' TTCAGTACGGATGA--CGTGGAGA 5'& |||||.| ||||||.| &5' ------TGCCTGCCTGGCACCTTT 3' Cpne1 mmu-miR-1904 beg:366 end:392 pic:3' GGAGGGAGGTCTC-CTCGTCTTG 5'& |.|.|||||.|.| |||| |||| &5' CTTTCCTCCGGGGCGAGCTGAAC 3' Cpne1 mmu-miR-1907 beg:116 end:131 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& |. ||||||||| &5' ----------CTGCTGCTGCTC 3' Cpne1 mmu-miR-190b beg:1640 end:1671 pic:3' TTGGGT-TATAGT--------TTGTATAGT 5'& |.|.| .||||| ||.||||| &5' -ATCTATGTATCAATAAAATTAATATATC- 3' Cpne1 mmu-miR-190b beg:1623 end:1646 pic:3' TTGGGTT-ATAGTTTGTATAGT 5'& |||| || |||.||||| &5' -ACCCTTTTAAAAAATATATC- 3' Cpne1 mmu-miR-1928 beg:512 end:530 pic:3' CTCGACC-GT---TACATCGA 5'& || || .|||||| &5' -----GGACATTTGTGTAGC- 3' Cpne1 mmu-miR-1929 beg:884 end:901 pic:3' GAGACGAGATATTTCAGGATCTT 5'& ||| ||.|||||.||. &5' -----CTC---AAGGTCCTGGAG 3' Cpne1 mmu-miR-1933-3p beg:878 end:900 pic:3' TATCAGTG-TGACTACCAGGACC 5'& |.|| ||| |||||||| &5' ----TTACAACTCAAGGTCCTGG 3' Cpne1 mmu-miR-1940 beg:358 end:379 pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& || |. |||| ||||||. &5' ---TGGTTGTCCTT-----TCCTCCG- 3' Cpne1 mmu-miR-1941-3p beg:723 end:735 pic:3' TACCCTCTATGACGATTCTAC 5'& |||||.||| &5' -----------TGCTAGGAT- 3' Cpne1 mmu-miR-1946b beg:589 end:607 pic:3' TTTTCGTACACGGTGGTGACGGGCCG 5'& |||.|||. ||||.|| &5' ---------TGCTACCG-TGCCTGG- 3' Cpne1 mmu-miR-1946b beg:133 end:155 pic:3' TTTTCGTACACGGTGGTGACGGGCCG 5'& ||| |||| | |||||.||| &5' -----CAT-TGCCTGC-CTGCCTGGC 3' Cpne1 mmu-miR-1948 beg:585 end:608 pic:3' GACATGCTCACGAG---ACGGATTT 5'& |||| |||| |||||..| &5' -TGTA----TGCTACCGTGCCTGGA 3' Cpne1 mmu-miR-1948 beg:136 end:154 pic:3' GACATGCTCACGAGACGGATTT 5'& |.| ||| ||||||.. &5' ---TGCC--TGC-CTGCCTGG- 3' Cpne1 mmu-miR-195 beg:113 end:128 pic:3' CGGTTATAAAGAC-ACGACGAT 5'& ||| |||||||. &5' ----------CTGCTGCTGCTG 3' Cpne1 mmu-miR-1952 beg:949 end:970 pic:3' GTCTT-CCTCCCACCTCT 5'& |||| ||.||| ||.|| &5' CAGACTGGGGGGAGGGGA 3' Cpne1 mmu-miR-1953 beg:354 end:376 pic:3' GTCTTCGGACT----CTTGAAAGGGT 5'& |.|| | ||||||. &5' ------CTTGTGGTTGTCCTTTCCT- 3' Cpne1 mmu-miR-1953 beg:1546 end:1567 pic:3' GTCTTCGGAC-TCTT-GAAAGGGT 5'& |.. || .|||||| &5' -----GTTGAAAGTATTTTTCCC- 3' Cpne1 mmu-miR-1955 beg:380 end:399 pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& .||||| |||||.|| &5' --GAGCTGAA-------CTGGGGCT 3' Cpne1 mmu-miR-1957 beg:104 end:125 pic:3' CAGTATACGAGATGGTGAC 5'& |.|||||. ||.| ||| &5' -TTATATGTACTGCTGCTG 3' Cpne1 mmu-miR-1957 beg:634 end:650 pic:3' CAGTATACGAGATGGTGAC 5'& .||||||||| ||. &5' --TATATGCTCT--CAT-- 3' Cpne1 mmu-miR-1958 beg:354 end:376 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& ||||. |.| | ||||||| &5' ACTTGTGGTTGTC-CTTTCCT- 3' Cpne1 mmu-miR-1959 beg:703 end:723 pic:3' GAGGT--GACTCGATGTAGGGG 5'& ||| .|||||| |||| &5' -TCCTATTTGAGCT---TCCC- 3' Cpne1 mmu-miR-1961 beg:1197 end:1213 pic:3' AAGATTG-ATGATGGAGT 5'& ||| ||||.|||| &5' ----AACTTACTGCCTC- 3' Cpne1 mmu-miR-1961 beg:863 end:874 pic:3' AAGATTGATGATGGAGT 5'& |||.|||. &5' --------ACTGCCTT- 3' Cpne1 mmu-miR-1968 beg:738 end:758 pic:3' TCAGGTGGTA-GGAATTGTCGACGT 5'& ||| ||| |||||.||| &5' -------CATGCCTCAACAGTTGC- 3' Cpne1 mmu-miR-1969 beg:1440 end:1463 pic:3' TGGGTACAATTTCAGAGGTAGAA 5'& |.||| || |||.|||||.| &5' -CTCAT-TTCTAGTTTCCATTT- 3' Cpne1 mmu-miR-1969 beg:70 end:93 pic:3' TGGGTACAATTTC-AGAGGTAGAA 5'& |.|| |.|||||.| &5' ---CGTGCACATTCTTTCCATTT- 3' Cpne1 mmu-miR-196a beg:1193 end:1212 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& |||. ||| |||.||| &5' -CCAG-AACTT---ACTGCCT- 3' Cpne1 mmu-miR-196b beg:1193 end:1212 pic:3' GGGTTGTTGTCCTTTGATGGAT 5'& |||. ||| |||.||| &5' -CCAG-AACTT---ACTGCCT- 3' Cpne1 mmu-miR-196b beg:845 end:873 pic:3' GGGTTGTTGTCC----TTTGATGGAT 5'& ||.||| || |.|||.||| &5' CCTAACCACTTTGCCCAGACTGCCT- 3' Cpne1 mmu-miR-1971 beg:29 end:47 pic:3' AGAGTCGG--GTCGGAAATG 5'& ||||||| |||||| &5' -CTCAGCCTGCAGCCT---- 3' Cpne1 mmu-miR-1982.2 beg:1384 end:1401 pic:3' GACACCCTCTTGTATCCCACT 5'& |||| ||| .|||||| &5' CTGT---AGA----GGGGTGA 3' Cpne1 mmu-miR-1982star beg:703 end:725 pic:3' GGAGGGGTC--CTGGGAGGGTT 5'& ||.||.| || |.|||||| &5' -CTTCCTATTTGAGCTTCCCAA 3' Cpne1 mmu-miR-19a beg:1156 end:1175 pic:3' AGTCAAAACGTAT-CTAAACGTGT 5'& ||||.|| |.||||||. &5' -----TTTGTATCTGGTTTGCAT- 3' Cpne1 mmu-miR-19b beg:1155 end:1175 pic:3' AGTCAAAACGTAC-CTAAACGTGT 5'& ||||.|| |.||||||. &5' -----TTTGTATCTGGTTTGCAT- 3' Cpne1 mmu-miR-200b beg:1349 end:1366 pic:3' AGTAGTAATGGTCCGTCATAAT 5'& ||.. |||||.||| &5' -------TATTT-GCAGTGTTA 3' Cpne1 mmu-miR-202-3p beg:79 end:109 pic:3' AGAAGGGTACG----CGA-TATGGAGA 5'& ||||.|||| |.| ||||.|.| &5' TCTTTCCATTTCATAGTTGATACTTTT 3' Cpne1 mmu-miR-203 beg:867 end:885 pic:3' GATCACCAGGATT-TGTAAAGTG 5'& ||| ||||||.|| &5' --------CCTTTTACATTTTAC 3' Cpne1 mmu-miR-203star beg:208 end:230 pic:3' ACAACTTGACAG---TTCTTGGTGA 5'& .|||| .|||.|||| &5' -----GACTGCTAGAGAGAGCCAC- 3' Cpne1 mmu-miR-206 beg:860 end:884 pic:3' GGTGTGTGAAGGA--ATGTAAGGT 5'& || || ||| ||| ||||||..| &5' CC-CAGACTGCCTTTTACATTTTA 3' Cpne1 mmu-miR-206 beg:70 end:95 pic:3' GGTGTGTG-AAGGAATGTAAGGT 5'& |. ||| |||.|| ||||.|| &5' -CGTGCACATTCTTTCCATTTCA 3' Cpne1 mmu-miR-20a beg:864 end:884 pic:3' GATGGACGTGATATTCGTGAAAT 5'& |||| || ||.|||| &5' ----CTGC-CTTTTA-CATTTTA 3' Cpne1 mmu-miR-20astar beg:963 end:984 pic:3' GAAATTCACGAGCA-TTACGTCA 5'& ..| |||| ||||||| &5' ----GGGAGCTCCTAAATGCAG- 3' Cpne1 mmu-miR-2134 beg:1255 end:1273 pic:3' CGT--GGGGCAAAGGGTTCTG 5'& ||| .||| ||||||| &5' GCAGTTCCC--TTCCCAA--- 3' Cpne1 mmu-miR-2135 beg:468 end:485 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& |||. . ||||.|| &5' -----GGCTGTTAGACTTC- 3' Cpne1 mmu-miR-2141 beg:1474 end:1494 pic:3' TTGAAAAGAC--TGTGGAGGA 5'& |||| |||..|||| &5' ----TTTCATACACATTTCCT 3' Cpne1 mmu-miR-221 beg:510 end:530 pic:3' CTTTGGGTCGTCTGT---TACATCGA 5'& | .|||| .|||||| &5' --------GGGGACATTTGTGTAGC- 3' Cpne1 mmu-miR-23a beg:1075 end:1094 pic:3' CCTTTAGGGAC-CG--TTACACTA 5'& |.||| |. .|||||| &5' ------CTCTGAGTTTGATGTGA- 3' Cpne1 mmu-miR-23b beg:1074 end:1094 pic:3' CCATTAGGGAC-CG--TTACACTA 5'& |.||| |. .|||||| &5' ------CTCTGAGTTTGATGTGA- 3' Cpne1 mmu-miR-23b beg:1344 end:1364 pic:3' CCATTAGGGACCGTTACACTA 5'& |||.|| ..| |||.||| &5' GGTGATATTT-GCAGTGT--- 3' Cpne1 mmu-miR-26a beg:672 end:695 pic:3' TCGGATAGGA-CCTAATGAACTT 5'& |.. || |||| ||||||| &5' -GTTG--CCAAGGATAACTTGAA 3' Cpne1 mmu-miR-27a beg:1273 end:1295 pic:3' CGCCTTGAATC-GGTGACACTT 5'& | |.| ..||||||| &5' --GAGATTCGATTTACTGTGA- 3' Cpne1 mmu-miR-27b beg:1274 end:1295 pic:3' CGTCTTGAATCGGTGACACTT 5'& ||| ..||||||| &5' --AGATTCGATTTACTGTGA- 3' Cpne1 mmu-miR-2861 beg:136 end:159 pic:3' GGCGGGCGG-CGGTCCG-GGG 5'& .|||.||| ||| ||| ||. &5' -TGCCTGCCTGCCTGGCACCT 3' Cpne1 mmu-miR-28star beg:1150 end:1169 pic:3' AGGTCGTCGAGTGTTAGATCAC 5'& || |.| . ||||.|| &5' ----GCTGTTTGT-ATCTGGT- 3' Cpne1 mmu-miR-291b-5p beg:253 end:272 pic:3' CCTCTCCCGGAGGTGAAACTAG 5'& ||| ||| |||||.|| &5' ---GAGTAGATCC-CTTTGGTC 3' Cpne1 mmu-miR-295star beg:809 end:828 pic:3' CTTCACACGGGGT-GTAAACTCA 5'& ||| ||||||.| &5' ------TGCATGTTCATTTGGG- 3' Cpne1 mmu-miR-295star beg:697 end:717 pic:3' CTTCACACGGGGT---GTAAACTCA 5'& |||.|| .||||||| &5' ------TGCTCCTTCCTATTTGAG- 3' Cpne1 mmu-miR-298 beg:1372 end:1391 pic:3' CCCTTCTTGTCGGGA-GGAGACGG 5'& |||| |. |.||||. &5' -------ACAGGCTGCCTTCTGT- 3' Cpne1 mmu-miR-29a beg:403 end:425 pic:3' ATTG-GCTAAAGTCTACCACGAT 5'& ||| |||| .|| ||||||| &5' -AACACGAT---GGAAGGTGCTA 3' Cpne1 mmu-miR-29b beg:403 end:425 pic:3' TTGTGACTAAAGTTTACCACGAT 5'& ||||| ||| .|| ||||||| &5' AACAC-GATG--GAA-GGTGCTA 3' Cpne1 mmu-miR-29c beg:403 end:425 pic:3' ATTG-GCTAAAGTTTACCACGAT 5'& ||| |||| .|| ||||||| &5' -AACACGATG--GAA-GGTGCTA 3' Cpne1 mmu-miR-302a beg:1162 end:1178 pic:3' AGTGGTTTTGTACCTT-CGTGAAT 5'& ||| |||.||| &5' -----------TGGTTTGCATTTA 3' Cpne1 mmu-miR-302cstar beg:1510 end:1529 pic:3' CGTCCATTGGGGTACAATTTCG 5'& |||. .||||||.||| &5' ------AACTGTATGTTAGAGC 3' Cpne1 mmu-miR-302d beg:1536 end:1562 pic:3' TGTGAGT-TTGTACC---TTCGTGAAT 5'& .|| .||||| |||.|.|| &5' ---TTCTTGACATGTTGAAAGTATTT- 3' Cpne1 mmu-miR-3072star beg:361 end:383 pic:3' GGAC-GGGAGGGA-GCCCCAGGGA 5'& .|| ||.|.||| ||||| | &5' -TTGTCCTTTCCTCCGGGG-C--- 3' Cpne1 mmu-miR-3099 beg:1431 end:1457 pic:3' AGGGGT-TGGAG-AGAGATCGGAT 5'& |||||| |.||| |.|||||..| &5' TCCCCAGATCTCATTTCTAGTTT- 3' Cpne1 mmu-miR-3099star beg:886 end:909 pic:3' GTTCCC-GACCTTCCTTCGACC 5'& ||||| |||||. |||||| &5' CAAGGTCCTGGAGT--AGCTGG 3' Cpne1 mmu-miR-30a beg:936 end:954 pic:3' GAAGGTCAGCTCCTACAAATGT 5'& | ||. |||||.|| &5' ---CTGGTTT----TGTTTGCA 3' Cpne1 mmu-miR-30a beg:277 end:301 pic:3' GAAGGTCAGCTCCT---ACAAATGT 5'& ||| || |||| ||||||. &5' ---CCATTCAAGGATTATGTTTAT- 3' Cpne1 mmu-miR-30b beg:1150 end:1174 pic:3' TCGACTCACATCCTACAAATGT 5'& |||| |||| ||||.|| &5' -GCTGTTTGTATCTGGTTTGCA 3' Cpne1 mmu-miR-30bstar beg:1033 end:1048 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& .|. |||||| &5' ---------GTTATAATCCCA- 3' Cpne1 mmu-miR-30c-1star beg:1249 end:1273 pic:3' CCTCAT-TTGTT--GGGAGAGGGTC 5'& |||| |.||. |||| ||||| &5' -GAGTTTAGCAGTTCCCT-TCCCA- 3' Cpne1 mmu-miR-30c-2star beg:1250 end:1273 pic:3' TCTCAT-TTGTCGGAA-GAGGGTC 5'& |||| |.|||.. .||||| &5' -GAGTTTAGCAGTTCCCTTCCCA- 3' Cpne1 mmu-miR-30e beg:936 end:954 pic:3' GAAGGTCAGTTCCTACAAATGT 5'& | ||. |||||.|| &5' ---CTGGTTT----TGTTTGCA 3' Cpne1 mmu-miR-320 beg:767 end:789 pic:3' AGCGGGAGAGTTGG------GTCGAAAA 5'& |||||| .||||||| &5' -------CTCAACAGTTTGATAGCTTTT 3' Cpne1 mmu-miR-322 beg:106 end:125 pic:3' AGGTTTTGTACTTAACGACGAC 5'& |.||| |||||||| &5' ------ATATGTACTGCTGCTG 3' Cpne1 mmu-miR-322star beg:1569 end:1589 pic:3' CACAACGTC-GCGAAGTACAAA 5'& ||. .|.||||||||| &5' ----TGTTACTGTTTCATGTTT 3' Cpne1 mmu-miR-335-3p beg:431 end:451 pic:3' CCAGTCC-TCGTTATTACTTTTT 5'& ||| |||| |||||.|.| &5' ----AGGTAGCA--AATGAGAGA 3' Cpne1 mmu-miR-335-5p beg:1526 end:1546 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& ||| || |||.|||||| &5' -----TTTTATT-TTGTTCTTGA 3' Cpne1 mmu-miR-337-3p beg:888 end:908 pic:3' TCCGTAGTATATCCTCGACTT 5'& |||. || |||||.| &5' AGGTCCTGG--AGTAGCTGGA 3' Cpne1 mmu-miR-339-5p beg:50 end:68 pic:3' GCACTCGAGGACCTCCTGTCCCT 5'& |||| |||.|||||| &5' -------TCCTC-AGGGCAGGGA 3' Cpne1 mmu-miR-343 beg:953 end:971 pic:3' AGACCCGTGTACTTCCCTCT 5'& ||||| ||.||||| &5' -CTGGGGG---GAGGGGAG- 3' Cpne1 mmu-miR-345-3p beg:902 end:922 pic:3' CAGAGGTCTGGGGATCAAGTCC 5'& | || |. ||||||| &5' ----CTGGAACTACAGTTCAG- 3' Cpne1 mmu-miR-3470b beg:594 end:620 pic:3' GGT-CGGACCAGATGTCTC-ACT 5'& ||. |||||| ||.|| ||| &5' CCGTGCCTGGAGTATAGTCTTGA 3' Cpne1 mmu-miR-3471 beg:1428 end:1447 pic:3' TTACGGAATGTCAACCTAGAGT 5'& |||| | ||||||| &5' ----CCTT-CCCCA-GATCTCA 3' Cpne1 mmu-miR-34a beg:121 end:143 pic:3' TGTTGGTCGATT--CTGTGACGGT 5'& .|. ||| ||||.|||| &5' ---GCT-GCTCTTTGACATTGCC- 3' Cpne1 mmu-miR-34b-5p beg:1194 end:1212 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& ||| .||||||| &5' -----CAGAACT---TACTGCCT 3' Cpne1 mmu-miR-34c beg:1194 end:1212 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& ||| ||| .||||||| &5' -----CAGA--ACT-TACTGCCT 3' Cpne1 mmu-miR-351 beg:38 end:61 pic:3' GTC---CGAGTTTCCCGAGGAGTCCCT 5'& ||| |||| ||||||||| &5' CAGCCTGCTCCA-----TCCTCAGGG- 3' Cpne1 mmu-miR-362-5p beg:665 end:687 pic:3' TAAGTGTGGATCCAA-GGTTCCTAA 5'& .|||..| ||| |||||||| &5' ---TACATTTT-GTTGCCAAGGAT- 3' Cpne1 mmu-miR-375 beg:1115 end:1133 pic:3' AGTGCGCTCGGCTTG-CTTGTTT 5'& .|.| || |||||| &5' -------GGTCAGACAGAACAA- 3' Cpne1 mmu-miR-378star beg:149 end:171 pic:3' TGTGTCC-TGGACCTC--AGTCCTC 5'& || |||| |||||| &5' -----GGCACCTTTTCATTCAGGA- 3' Cpne1 mmu-miR-380-3p beg:980 end:1000 pic:3' TTCTACACC-TGGT-ATGATGTAT 5'& || |.|| ||.||.||| &5' -------GGTATCAGTATTATATA 3' Cpne1 mmu-miR-381 beg:1146 end:1162 pic:3' TGTCTCTCGAACGG-GAACATAT 5'& |. |||. .|||||| &5' -------GTGTGCTGTTTGTAT- 3' Cpne1 mmu-miR-382 beg:1115 end:1137 pic:3' GCTTAGGTGGTGCTTGTTGAAG 5'& ..|| || |||||||||. &5' --GGTCAGACA-GAACAACTTT 3' Cpne1 mmu-miR-382 beg:673 end:692 pic:3' GCTTAGGTGGTGCTTGTTGAAG 5'& . ||| |.|.||||| &5' -----TTGCCAAGGATAACTT- 3' Cpne1 mmu-miR-384-5p beg:930 end:954 pic:3' TGTAACGGAT---CCTTAACAAATGT 5'& || || ||||||.|| &5' -----GCAAAACTGGTTTTGTTTGCA 3' Cpne1 mmu-miR-423-5p beg:482 end:505 pic:3' TTTCAGA-GCGA--GAGACGGGGAGT 5'& || .||| |||||.||||| &5' -----CTGTGCTAGCTCTGTCCCTC- 3' Cpne1 mmu-miR-434-3p beg:912 end:934 pic:3' TCCTCAGCTCACT-ACCAAGTTT 5'& |||. |||| |||||.|. &5' ---AGTTCAGTGTCTGGTTTAG- 3' Cpne1 mmu-miR-449a beg:1192 end:1211 pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||||| || .|||||| &5' ACCAGA--ACT---TACTGCC- 3' Cpne1 mmu-miR-449b beg:1193 end:1212 pic:3' CGGTCGATTGTTGTGACGGA 5'& |||| || .||||||| &5' -CCAGA--ACT-TACTGCCT 3' Cpne1 mmu-miR-449b beg:1364 end:1386 pic:3' CGGTCGAT--TGTTGTGACGGA 5'& |||.|| |||. .|||||| &5' --CAGTTATTACAG-GCTGCCT 3' Cpne1 mmu-miR-449c beg:1193 end:1212 pic:3' GGTCGATCGTTACGTGACGGA 5'& |||| .||||||| &5' CCAGAACT-----TACTGCCT 3' Cpne1 mmu-miR-450a-3p beg:711 end:725 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& .||| |.||||| &5' ---------GAGC-TTCCCAA- 3' Cpne1 mmu-miR-450a-3p beg:728 end:751 pic:3' TACTTACGTTTCGTA-GGGGTTA 5'& |.|| |||||| ||.||| &5' --GGATTATAAGCATGCCTCAA- 3' Cpne1 mmu-miR-450b-3p beg:1255 end:1273 pic:3' TACGTACGTTTTAC-AAGGGTTA 5'& |||. ||||||| &5' ------GCAGTTCCCTTCCCAA- 3' Cpne1 mmu-miR-466b-5p beg:1467 end:1490 pic:3' GTACATGTACAT--GTGTGTGTAG 5'& ||.|| ||.||||||. &5' ----TATATTATTTCATACACATT 3' Cpne1 mmu-miR-469 beg:418 end:439 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& . |.| ||.|| ||||||.| &5' --GTGCTA----CAGTGTAAGAGGTA 3' Cpne1 mmu-miR-470 beg:274 end:291 pic:3' TGAGTGGTCACGGTCAGGTTCTT 5'& ||| ||| |.||||.| &5' ----ACC----CCA-TTCAAGGA 3' Cpne1 mmu-miR-488 beg:182 end:204 pic:3' CTGGTTCTTT-GTC-GGAAAGTT 5'& |||| || |||||||| &5' ----AAGATATCACTCCTTTCAA 3' Cpne1 mmu-miR-488 beg:857 end:877 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& .|| ||| ||||||.| &5' -GCCCAGACT--GCCTTTTA- 3' Cpne1 mmu-miR-493 beg:84 end:110 pic:3' GGACCGTGTGTCATCC-TGGAAGT 5'& || ||.||| ||.||.| &5' CCATTT-CATAGTTGATACTTTTA 3' Cpne1 mmu-miR-497 beg:105 end:128 pic:3' ATGTT--TGGTGTCACACGACGAC 5'& ||.| || | |||||||| &5' TATATGTACTGC----TGCTGCTG 3' Cpne1 mmu-miR-499 beg:605 end:620 pic:3' TTTGTAGTGACGT-TCAGAATT 5'& |.| ||||||.| &5' ----------GTATAGTCTTGA 3' Cpne1 mmu-miR-500 beg:575 end:593 pic:3' ACTTGGGAACGGGTCCACGTAA 5'& |||.. ||||||.|| &5' -GAATTA-----CAGGTGTAT- 3' Cpne1 mmu-miR-503 beg:110 end:130 pic:3' GACGTCATGACAAGGGCGACGAT 5'& |||||| | |.|||||| &5' -----GTACTGCTGCTGCTGCT- 3' Cpne1 mmu-miR-503 beg:1568 end:1589 pic:3' GACGTCATGACAAGGGCGACGAT 5'& |||. |||||||.| ||.| &5' CTGT--TACTGTTTCA--TGTT- 3' Cpne1 mmu-miR-509-5p beg:589 end:611 pic:3' TACTAACGGT-GTAA-GACCTCAT 5'& |||.| |.| |||||||| &5' -----TGCTACCGTGCCTGGAGTA 3' Cpne1 mmu-miR-539 beg:1294 end:1325 pic:3' TGTGTGG--------TTCCTATTAAAGAGG 5'& |||||| .|| |..|||.|| &5' ACACACATTTTTGAAGAGT-TGGTTTTTC- 3' Cpne1 mmu-miR-540-3p beg:1393 end:1414 pic:3' GGTC-CTAG-CTGGAGACTGGA 5'& .| |||| |||||||||. &5' --GGTGATCTGACCTCTGAT-- 3' Cpne1 mmu-miR-542-3p beg:1564 end:1578 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& || ||||||.|| &5' ---------TC-ATCTGTTAC- 3' Cpne1 mmu-miR-582-3p beg:762 end:776 pic:3' AACCCAAGTCAACAAGTTGTCC 5'& ||| ||||||| &5' -------CAGC---TCAACAG- 3' Cpne1 mmu-miR-666-3p beg:24 end:46 pic:3' TCGTCCGCTAGTGCGACGTCGG 5'& ||| | .| |||||||| &5' --CAGTCCTCAGC-CTGCAGCC 3' Cpne1 mmu-miR-666-5p beg:124 end:150 pic:3' CCGAGAG--TGT--CGACACGGGCGA 5'& |||||. ||| || ||||.|| &5' -GCTCTTTGACATTGCC-TGCCTGC- 3' Cpne1 mmu-miR-669a beg:393 end:414 pic:3' TGTACTTGTACGTGTGTGTTGA 5'& .| ||| .||| ||||.|. &5' GC-TGACTATGA--ACACGAT- 3' Cpne1 mmu-miR-669g beg:1579 end:1606 pic:3' TAGTACAGTTGTGTAT-GT-TACGT 5'& ||||||. .|.|| || |||.| &5' -TCATGTTTTTATATTCCATATGTA 3' Cpne1 mmu-miR-672 beg:548 end:569 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& || ||. |.|. ||||||.| &5' --AC-CATCCTGCGGCAACCTTA 3' Cpne1 mmu-miR-673-3p beg:882 end:901 pic:3' CCACGTGTCTTGAG--TCGGGGCCT 5'& ||||| .|.||.||| &5' ---------AACTCAAGGTCCTGGA 3' Cpne1 mmu-miR-674 beg:907 end:925 pic:3' ATGTGGTGAGGGTAGAGTCACG 5'& ||.|| .||||||. &5' ---ACTACAG----TTCAGTGT 3' Cpne1 mmu-miR-676star beg:1376 end:1395 pic:3' CGTTCAGGATTCCAACATCTCA 5'& || ||| ||||||| &5' GCTG--CCTTC---TGTAGAG- 3' Cpne1 mmu-miR-681 beg:1375 end:1399 pic:3' TCGACGGACGG--TCGCTCCGAC 5'& .||||||| |. || |.||. &5' GGCTGCCTTCTGTAGAGGGGT-- 3' Cpne1 mmu-miR-682 beg:1504 end:1520 pic:3' GTCTGAAGTGACACTGACGTC 5'& ||||| ||||.| &5' -----TTCACAA--ACTGTA- 3' Cpne1 mmu-miR-684 beg:813 end:835 pic:3' AACTGAACT-TCCCTTTTGA 5'& || .||||||||| &5' -TGTTCATTTGGGGAAAACT 3' Cpne1 mmu-miR-689 beg:499 end:519 pic:3' CCTGGGGCGGCTC---GCCCCTGC 5'& ||| |.| .|||||| &5' ----CCCTCTGTTTCTTGGGGAC- 3' Cpne1 mmu-miR-690 beg:597 end:618 pic:3' AAACCAACACTCGGATCGGAAA 5'& || || |||. |||.||| &5' --TGCCTG-GAGTATAGTCTT- 3' Cpne1 mmu-miR-691 beg:154 end:172 pic:3' AAAAGACGGAGAG-AAGTCCTTA 5'& |.|.|| |||||||| &5' -------CTTTTCATTCAGGAA- 3' Cpne1 mmu-miR-694 beg:149 end:164 pic:3' GAAGTCCGTTGTAAAAGTC 5'& ||| || |||||| &5' -----GGC-ACCTTTTCA- 3' Cpne1 mmu-miR-706 beg:1302 end:1325 pic:3' AAAAAAC-TCTGTCCCAAAGAGA 5'& |||||| ||| |||||.|| &5' -TTTTTGAAGAGTTGGTTTTTC- 3' Cpne1 mmu-miR-708 beg:955 end:976 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& | | .|| .||||||| &5' -CTGGGGGGAGGG-GAGCTCCT- 3' Cpne1 mmu-miR-708star beg:1436 end:1456 pic:3' GATCTTCGAGTGTCAGATCAAC 5'& ||| ||||. ||||||| &5' --AGAT-CTCATT-TCTAGTT- 3' Cpne1 mmu-miR-709 beg:1190 end:1214 pic:3' AGGAGGAC--GGA-GACGGAGG 5'& ||| || |.| |||||||| &5' TCCACCAGAACTTACTGCCTCC 3' Cpne1 mmu-miR-713 beg:914 end:925 pic:3' CGACACACGGAAGTCACGT 5'& |||||||. &5' ----------TTCAGTGT- 3' Cpne1 mmu-miR-758 beg:1495 end:1515 pic:3' ATCACCTGGTCCAGTGTTT 5'& ||| ||| | ||||||| &5' -AGTA-ACCTGTTCACAAA 3' Cpne1 mmu-miR-758 beg:1021 end:1043 pic:3' ATCACCTGGT-CCAGTGTTT 5'& |.|||| || |||.|.|| &5' TGGTGGCTCATGGTTATAA- 3' Cpne1 mmu-miR-875-3p beg:1308 end:1327 pic:3' GTATCGGAGTCATAAAAGTCC 5'& || | || ||||||| &5' ---AGAGTTGGT-TTTTCAG- 3' Cpne1 mmu-miR-875-5p beg:571 end:591 pic:3' GTGGACTATTTTGAC-TCCATAT 5'& || ||.||.| ||||.|| &5' ----TGCTAGAATTACAGGTGTA 3' Cpne1 mmu-miR-881star beg:1458 end:1471 pic:3' TCTACACTGACAATAGAGAGAC 5'& ||||.||||| &5' -----------TTATTTCTCT- 3' Cpne1 mmu-miR-883a-3p beg:1354 end:1373 pic:3' TATGACTCTCG--ACAA-CGTCAAT 5'& || |||| ||||||| &5' ---------GCAGTGTTAGCAGTTA 3' Cpne1 mmu-miR-883a-3p beg:530 end:548 pic:3' TATGACTCTCGACA--ACGTCAAT 5'& .|||| ||||||| &5' --------GGCTGGCCTGCAGTT- 3' Cpne1 mmu-miR-883a-5p beg:1484 end:1502 pic:3' CATTGACGATGAAG--AGAGTCGT 5'& |.||| ||||||.| &5' ---------ATTTCCTTCTCAGTA 3' Cpne1 mmu-miR-883b-3p beg:1357 end:1373 pic:3' TATGACTCTCTACAA-CGTCAAT 5'& .|||| ||||||| &5' ----------GTGTTAGCAGTTA 3' Cpne1 mmu-miR-883b-5p beg:1487 end:1502 pic:3' ACTGACGATGGGTAAGAGTCAT 5'& .|| ||||||||| &5' ---------TCC-TTCTCAGTA 3' Cpne1 mmu-miR-9 beg:1234 end:1254 pic:3' AGTATGTCGATCTAT--TGGTTTCT 5'& |. ||| ||||.|| &5' -------GTAAGAATATACCAGAG- 3' Cpne1 mmu-miR-98 beg:732 end:750 pic:3' TTGTTATGTTGAATG-ATGGAGT 5'& ||.|| .| |.||||| &5' -----TATAA---GCATGCCTCA 3' Cpne1 mmu-miR-99bstar beg:704 end:720 pic:3' GCCTGGGTGTCTGTGCTCGAAC 5'& ||.|. .|||||| &5' ----CCTATT----TGAGCTT- 3' Cpne1 mmu-miR-488star beg:1149 end:1168 pic:3' AACTCTCACGATA---ATAGACCC 5'& |||||.| ||||||| &5' ------GTGCTGTTTGTATCTGG- 3' Cpne1 mmu-miR-374 beg:979 end:999 pic:3' GTGAATCGTCCAA---CATAATATA 5'& |||||| ||||||||| &5' ------GCAGGTATCAGTATTATAT 3' Cpne1 mmu-miR-133astar beg:750 end:769 pic:3' TAAACCAAGGTAAAATGGTCG 5'& ||| | ||||||||| &5' -----GTTGCCCTTTACCAGC 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cpne1 RAID00028668 mmu-miR-7005-5p miRNA MIMAT0027914 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00031044 mmu-miR-361-5p miRNA MIMAT0000704 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00049060 mmu-miR-382-5p miRNA MIMAT0000747 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00161567 mmu-miR-15b-5p miRNA MIMAT0000124 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID00298622 mmu-miR-7081-5p miRNA MIMAT0028068 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00369312 mmu-miR-500-5p miRNA MIMAT0017258 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00456780 mmu-miR-6240 miRNA MIMAT0024861 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00470773 mmu-miR-200c-3p miRNA MIMAT0000657 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00553735 mmu-miR-6975-5p miRNA MIMAT0027852 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00666749 mmu-miR-351-3p miRNA MIMAT0017042 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00713181 mmu-miR-3094-5p miRNA MIMAT0014909 Cpne1 mRNA 266692 CLIP-seq 0.5483 Cpne1 RAID00793765 mmu-miR-6944-5p miRNA MIMAT0027788 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00876236 mmu-miR-539-5p miRNA MIMAT0003169 Cpne1 mRNA 266692 Prediction 0.2202 Cpne1 RAID00894037 mmu-miR-1231-5p miRNA MIMAT0022357 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00936731 mmu-miR-488-3p miRNA MIMAT0003450 Cpne1 mRNA 266692 Prediction 0.2202 Cpne1 RAID00971115 mmu-miR-155-5p miRNA MIMAT0000165 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID00986846 mmu-miR-25-3p miRNA MIMAT0000652 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID01026032 mmu-miR-27a-3p miRNA MIMAT0000537 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID01043185 mmu-miR-7652-5p miRNA MIMAT0029810 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID01067441 mmu-miR-140-5p miRNA MIMAT0000151 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID01111765 mmu-miR-124-3p miRNA MIMAT0000134 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID01145613 mmu-miR-1907 miRNA MIMAT0007876 Cpne1 mRNA 266692 CLIP-seq 0.5483 Cpne1 RAID01186048 mmu-miR-7222-3p miRNA MIMAT0028413 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID01214300 mmu-miR-375-3p miRNA MIMAT0000739 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID01220617 mmu-miR-691 miRNA MIMAT0003470 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID01399134 mmu-miR-1199-5p miRNA MIMAT0005860 Cpne1 mRNA 266692 CLIP-seq 0.5483 Cpne1 RAID01488705 mmu-miR-376b-3p miRNA MIMAT0001092 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID01501994 mmu-miR-340-5p miRNA MIMAT0004651 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID01543615 mmu-miR-194-5p miRNA MIMAT0000224 Cpne1 mRNA 266692 Prediction 0.2202 Cpne1 RAID01685798 mmu-miR-186-5p miRNA MIMAT0000215 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID01737228 mmu-miR-26b-5p miRNA MIMAT0000534 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID01808604 mmu-miR-122-5p miRNA MIMAT0000246 Cpne1 mRNA 266692 CLIP-seq 0.5483 Cpne1 RAID01904452 mmu-miR-376c-3p miRNA MIMAT0003183 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID01994407 mmu-miR-6419 miRNA MIMAT0025175 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02000793 mmu-miR-883b-5p miRNA MIMAT0004850 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02057128 mmu-miR-92b-3p miRNA MIMAT0004899 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID02066973 mmu-miR-182-5p miRNA MIMAT0000211 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02110557 mmu-miR-136-5p miRNA MIMAT0000148 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02125581 mmu-miR-7024-3p miRNA MIMAT0027953 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02127656 mmu-miR-708-3p miRNA MIMAT0003498 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02167551 mmu-miR-377-3p miRNA MIMAT0000741 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02180632 mmu-miR-496a-5p miRNA MIMAT0017244 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02283328 mmu-miR-7033-5p miRNA MIMAT0027970 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02284183 mmu-miR-421-3p miRNA MIMAT0004869 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02308509 mmu-miR-134-5p miRNA MIMAT0000146 Cpne1 mRNA 266692 Prediction 0.2202 Cpne1 RAID02354709 mmu-miR-590-3p miRNA MIMAT0004896 Cpne1 mRNA 266692 Prediction 0.2202 Cpne1 RAID02430155 mmu-miR-8107 miRNA MIMAT0031412 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02468039 mmu-miR-374b-5p miRNA MIMAT0003727 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02483340 mmu-miR-7041-5p miRNA MIMAT0027986 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02559069 mmu-miR-509-5p miRNA MIMAT0004890 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02594439 mmu-miR-362-5p miRNA MIMAT0000706 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02614143 mmu-miR-216b-5p miRNA MIMAT0003729 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02630652 mmu-miR-10a-5p miRNA MIMAT0000648 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02727715 mmu-miR-141-3p miRNA MIMAT0000153 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02740454 mmu-miR-34b-5p miRNA MIMAT0000382 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02783336 mmu-miR-6905-5p miRNA MIMAT0027710 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02799098 mmu-miR-92a-3p miRNA MIMAT0000539 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID02838735 mmu-miR-802-5p miRNA MIMAT0004188 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02851618 mmu-miR-16-5p miRNA MIMAT0000527 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID02876140 mmu-miR-1224-5p miRNA MIMAT0005460 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02922730 mmu-miR-15a-5p miRNA MIMAT0000526 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID02963012 mmu-miR-544-3p miRNA MIMAT0004941 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02981289 mmu-miR-6769b-5p miRNA MIMAT0028040 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID02991308 mmu-miR-18a-5p miRNA MIMAT0000528 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID03182385 mmu-miR-200b-3p miRNA MIMAT0000233 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID03251210 mmu-miR-653-5p miRNA MIMAT0004943 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID03267524 mmu-miR-195a-5p miRNA MIMAT0000225 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID03290968 mmu-miR-330-3p miRNA MIMAT0000569 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID03322667 mmu-miR-574-5p miRNA MIMAT0004893 Cpne1 mRNA 266692 CLIP-seq 0.5483 Cpne1 RAID03331463 mmu-miR-5110 miRNA MIMAT0020618 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID03398695 mmu-miR-203-3p miRNA MIMAT0000236 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID03437202 mmu-miR-107-3p miRNA MIMAT0000647 Cpne1 mRNA 266692 CLIP-seq 0.5483 Cpne1 RAID03441762 mmu-miR-322-3p miRNA MIMAT0000549 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID03581363 mmu-miR-27b-3p miRNA MIMAT0000126 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID03650633 mmu-miR-429-3p miRNA MIMAT0001537 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID03724086 mmu-miR-322-5p miRNA MIMAT0000548 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID03774289 mmu-miR-6981-5p miRNA MIMAT0027864 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID03798438 mmu-miR-8108 miRNA MIMAT0031413 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID03816999 mmu-miR-497a-5p miRNA MIMAT0003453 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID03891950 mmu-miR-200a-3p miRNA MIMAT0000519 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID03948227 mmu-miR-876-3p miRNA MIMAT0004855 Cpne1 mRNA 266692 Prediction 0.1828 Cpne1 RAID04005736 mmu-miR-18b-5p miRNA MIMAT0004858 Cpne1 mRNA 266692 CLIP-seq//Prediction 0.6308 Cpne1 RAID05089342 Fendrr lncRNA 68790 Cpne1 protein 266692 Microarray//RNA-seq 0.6606