DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Klhl41; Kbtbd10 ATTTA 72-1892 1947-1951 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Klhl41; Kbtbd10 WWATTTAWW 72-1892 1945-1953 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT598519 mmu-miR-10b-5p Mus musculus Klhl41 228003 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598522 mmu-miR-290a-5p Mus musculus Klhl41 228003 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598523 mmu-miR-292a-5p Mus musculus Klhl41 228003 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598521 mmu-miR-339-5p Mus musculus Klhl41 228003 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598520 mmu-miR-10a-5p Mus musculus Klhl41 228003 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598518 mmu-miR-706 Mus musculus Klhl41 228003 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598516 mmu-miR-665-3p Mus musculus Klhl41 228003 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598517 mmu-miR-3082-5p Mus musculus Klhl41 228003 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598515 mmu-miR-5135 Mus musculus Klhl41 228003 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 228003 Kbtbd10 aucUCGUCGUUUAUUACUAAGc ||| :| | |||||||| uuaAGC-CUAUACAAUGAUUCa 2 20 70 90 [mm9:2:69521726-69521746:+] 0.6076 153 7 -11.01 -1.0424 MIMAT0004527 mmu-miR-124* 228003 Kbtbd10 uaguucCAGGCGAC-ACUUGUgc || : | | |||||| aguuuaGUAUUCAGUUGAACAau 3 17 190 212 [mm9:2:69521846-69521868:+] 0.5252 123 0 -7.52 -0.1453 MIMAT0000143 mmu-miR-9* 228003 Kbtbd10 ugaAAGCCAAUAGAUCGAAAUa || || | :|||||| uugUUGGGACAAGAGGCUUUAa 2 20 34 55 [mm9:2:69521690-69521711:+] 0.5873 131 6 -9.49 -0.1289 MIMAT0004533 mmu-miR-141* 228003 Kbtbd10 aggUUGUGACGUGACCUUC-UAc ||::|||: : ||||| || ggaAAUGCUGUUUAGGAAGUAUa 2 20 591 613 [mm9:2:69522247-69522269:+] 0.5769 127 0 -12.93 -1.0310 MIMAT0004573 mmu-miR-293* 228003 Kbtbd10 guuuuacagUGUGUCAAACUCa |||||||||||| gugacaaagACACAGUUUGAGa 2 14 6 27 [mm9:2:69521662-69521683:+] 0.6476 165 7 -22.42 -0.2256 MIMAT0004574 mmu-miR-294* 228003 Kbtbd10 ucuaucccggagguAAAACUCa ||||||| uuuuuuuuuugguuUUUUGAGa 2 9 226 247 [mm9:2:69521882-69521903:+] 0.5252 140 7 -8.51 -1.1056 MIMAT0004628 mmu-miR-21* 228003 Kbtbd10 cugucggguagcUGACGACAAc | ||||||| aagaugacuggaAAUGCUGUUu 2 11 582 603 [mm9:2:69522238-69522259:+] 0.5735 142 7 -12.32 -1.1058 MIMAT0004633 mmu-miR-27a* 228003 Kbtbd10 acgAGUGUUCGUCGAUUCGGGa |::: | : :||||||: uuaUUGUCAUUCUUUAAGCCUa 2 20 57 78 [mm9:2:69521713-69521734:+] 0.6076 127 0 -10.09 -0.1799 MIMAT0000544 mmu-miR-129-3p 228003 Kbtbd10 uaCGAAAAACCCCAUUC-CCGAa |||| ||||| ||| |||| ugGCUUGUUGGGACAAGAGGCUu 2 21 30 52 [mm9:2:69521686-69521708:+] 0.5873 140 0 -23.31 -0.8197 MIMAT0004647 mmu-miR-338-5p 228003 Kbtbd10 gugagucgugguccuAUAACAa |||||| caagaggcuuuaauuUAUUGUc 2 8 43 64 [mm9:2:69521699-69521720:+] 0.5873 120 6 -7.68 -0.1196 MIMAT0003387 mmu-miR-376a* 228003 Kbtbd10 ugaguaucUUCCUCUUAGAUGg |||| |||||| guauucuuAAGGUACAUCUACu 2 15 451 472 [mm9:2:69522107-69522128:+] 0.5692 122 6 -14.08 -0.1016 MIMAT0001093 mmu-miR-411* 228003 Kbtbd10 ccaaUCACCUGGCACA-AUGUAu | || |:| ||| ||||| augaAAUGCAUC-UGUCUACAUu 2 19 488 509 [mm9:2:69522144-69522165:+] 0.5692 120 0 -8.53 -0.9336 MIMAT0004758 mmu-miR-463 228003 Kbtbd10 gaUGGA-AUAUACCACAGAUAGu || | || || |||||||: guACAUCUACUUGUUGUCUAUUa 2 21 462 484 [mm9:2:69522118-69522140:+] 0.5692 143 0 -15.48 -0.2913 MIMAT0002110 mmu-miR-469 228003 Kbtbd10 ccugugguucuaguuaCU-UUCUCCGu || ||||||| agagguggcuuguuggGACAAGAGGCu 2 11 25 51 [mm9:2:69521681-69521707:+] 0.5873 141 7 -15.31 -0.6408 MIMAT0003186 mmu-miR-369-3p 228003 Kbtbd10 uuucuaguugguacAUAAUAa |||||| aucuacuuguugucUAUUAUa 2 8 466 486 [mm9:2:69522122-69522142:+] 0.5692 120 6 -3.94 -0.2174 MIMAT0003741 mmu-miR-674* 228003 Kbtbd10 aacAAGACUCUACCCUCGACAc |||| | || |||||||| gcuUUCU-ACAUCGGAGCUGUu 2 20 418 438 [mm9:2:69522074-69522094:+] 0.5249 165 7 -14.99 -0.4427 MIMAT0003474 mmu-miR-694 228003 Kbtbd10 gaaguccgUUGUAAAAGUc :| ||||||| gaaucccaGAGAUUUUCAg 2 12 142 160 [mm9:2:69521798-69521816:+] 0.5252 143 7 -10.99 -0.2310 MIMAT0003496 mmu-miR-706 228003 Kbtbd10 aaAAAACUCUGUCCCAAAGAGa ||||||||||||||||||| uuUUUUGAGACAGGGUUUCUCu 2 21 238 259 [mm9:2:69521894-69521915:+] 0.5252 200 7 -37.30 -0.3545 MIMAT0003496 mmu-miR-706 228003 Kbtbd10 aaaaAACUCUGUCCCAAAGAGa || | :|| ||||||| gggaUUCACGCA--GUUUCUCu 2 19 103 122 [mm9:2:69521759-69521778:+] 0.5272 147 7 -12.78 -0.1691 MIMAT0003499 mmu-miR-709 228003 Kbtbd10 agGAGGACGGAGACGGAGg | |||||||||||||| ucCGCCUGCCUCUGCCUCc 2 18 320 338 [mm9:2:69521976-69521994:+] 0.4990 177 7 -40.21 -0.1088 MIMAT0004842 mmu-miR-879 228003 Kbtbd10 ccgaaucucGAUAUUCGGAga || ||||||| auugucauuCUUUAAGCCUau 3 13 59 79 [mm9:2:69521715-69521735:+] 0.6076 132 0 -11.12 -0.1368 MIMAT0004846 mmu-miR-881 228003 Kbtbd10 agauaaguCU-UUUCUGUGUCAa || ||||||||||| -aggagguGACAAAGACACAGUu 2 15 1 22 [mm9:2:69521657-69521678:+] 0.6476 161 7 -17.87 -0.3380 MIMAT0004892 mmu-miR-568 228003 Kbtbd10 cacacauauguaaAUAUGUa |||||| cauucuuuaagccUAUACAa 2 8 64 83 [mm9:2:69521720-69521739:+] 0.6076 120 6 -5.21 -0.1136 MIMAT0004933 mmu-miR-878-3p 228003 Kbtbd10 agauGGGUCACACCACAGUAcg :::| | | |||||| aggcUUUAAUUUAUUGUCAUuc 3 19 47 68 [mm9:2:69521703-69521724:+] 0.6076 126 0 -6.88 -0.1659 MIMAT0004938 mmu-miR-875-3p 228003 Kbtbd10 guaUCGGAGUC-AUAAAAGUCc | :| ||| |||||||| ccgAAUCCCAGAGAUUUUCAGu 2 19 140 161 [mm9:2:69521796-69521817:+] 0.5252 153 7 -15.02 -0.3789 MIMAT0005856 mmu-miR-1195 228003 Kbtbd10 acUCGUCCGACCGGAGCUUGAGu | |||||||||||||||||| agACCAGGCUGGCCUCGAACUCa 2 22 293 315 [mm9:2:69521949-69521971:+] 0.4993 197 7 -45.31 -0.2176 MIMAT0007866 mmu-miR-1905 228003 Kbtbd10 gauggcgcaccaccCUGACCac |||||| auuauaaugaagauGACUGGaa 3 9 573 594 [mm9:2:69522229-69522250:+] 0.5735 120 0 -11.63 -0.1171 MIMAT0009400 mmu-miR-1936 228003 Kbtbd10 cggUCAAGUGUCGUCCAGUCAAu |||| :||:| |||||| ggaAGUU--UAGUA-UUCAGUUg 2 21 187 206 [mm9:2:69521843-69521862:+] 0.5252 123 6 -13.39 -0.1222 MIMAT0009407 mmu-miR-1942 228003 Kbtbd10 guugGUCUAC-UUCUGUAGACu :| ||| || :|||||| auuaUAAAUGAAAUGCAUCUGu 2 18 481 502 [mm9:2:69522137-69522158:+] 0.5692 140 6 -12.68 -0.1230 MIMAT0009412 mmu-miR-1946a 228003 Kbtbd10 uuUUCACACACGGUGGUGACGGGCCGa |:| ||| |||||||| ||||||| aaAGGCGUGCGCCACCAC-GCCCGGCu 2 26 353 378 [mm9:2:69522009-69522034:+] 0.4896 191 7 -45.78 -0.1767 MIMAT0009412 mmu-miR-1946a 228003 Kbtbd10 uuuUCACACACGGUGGUGACGGG-CCGa || || | :| :|: |||| ||| gacAGGGUUUCUCUGUAUAGCCCUGGCu 2 25 246 273 [mm9:2:69521902-69521929:+] 0.5123 124 0 -24.03 -0.1393 MIMAT0009424 mmu-miR-1953 228003 Kbtbd10 gucuucgGACUCUUGAAAGGGu | || | ||||||| ugaauaaCGGAAACCUUUCCCc 2 16 523 544 [mm9:2:69522179-69522200:+] 0.5692 151 7 -14.32 -0.6513 MIMAT0009438 mmu-miR-1965 228003 Kbtbd10 acGCGGUGAUGCCGGGCCGAa |||||| || |||||||| ugCGCCACCAC-GCCCGGCUu 2 20 360 379 [mm9:2:69522016-69522035:+] 0.4896 173 7 -37.67 -0.2506 MIMAT0000128 mmu-miR-30a 228003 Kbtbd10 gaAGGU-CAGCUCCUACAAAUGu ||:| |||: | ||||||| uuUCUACAUCGGAGCUGUUUACu 2 21 420 442 [mm9:2:69522076-69522098:+] 0.5249 159 7 -16.66 -0.2875 MIMAT0000130 mmu-miR-30b 228003 Kbtbd10 ucgacucacAUCCU--ACAAAUGu | ||| ||||||| cuuucuacaUCGGAGCUGUUUACu 2 14 419 442 [mm9:2:69522075-69522098:+] 0.5249 144 7 -8.28 -0.2925 MIMAT0000157 mmu-miR-145 228003 Kbtbd10 ucccuaaggaccCUUUUGACCUg || :|||||| cauuauaaugaaGAUGACUGGAa 2 12 572 594 [mm9:2:69522228-69522250:+] 0.5735 131 6 -12.78 -0.1500 MIMAT0000208 mmu-miR-10b 228003 Kbtbd10 guguuuAAGCCAAGA-----UGUCCCAu ||:||||:| ||||||| uuuuuuUUUGGUUUUUUGAGACAGGGUu 2 18 227 254 [mm9:2:69521883-69521910:+] 0.5252 152 7 -19.80 -0.5890 MIMAT0000211 mmu-miR-182 228003 Kbtbd10 gccacaCUCAAGAUGGUA-ACGGUUu ||| |:| | :| |||||| aucccaGAGAUUUUCAGUGUGCCAAg 2 20 144 169 [mm9:2:69521800-69521825:+] 0.5252 127 6 -16.13 -1.0351 MIMAT0000213 mmu-miR-184 228003 Kbtbd10 ugggaaUAGUCAAGAGG-CAGGu || || ||||| |||| uaauaaAUGAG-UCUCCAGUCCu 2 17 612 633 [mm9:2:69522268-69522289:+] 0.5496 122 0 -17.77 -0.5269 MIMAT0000215 mmu-miR-186 228003 Kbtbd10 ucggguuuuccucuUAAGAAAc ||||||| uuuaauuuauugucAUUCUUUa 2 9 51 72 [mm9:2:69521707-69521728:+] 0.6076 140 7 -5.38 -0.9199 MIMAT0000248 mmu-miR-30e 228003 Kbtbd10 gaAGGU-CAGUUCCUACAAAUGu ||:| ||:: | ||||||| uuUCUACAUCGGAGCUGUUUACu 2 21 420 442 [mm9:2:69522076-69522098:+] 0.5249 155 7 -15.08 -0.2925 MIMAT0000366 mmu-miR-290-5p 228003 Kbtbd10 uuucacggggGUAUCAAACUCa || |||||||| gugacaaagaCACAGUUUGAGa 2 13 6 27 [mm9:2:69521662-69521683:+] 0.6476 152 7 -13.95 -0.2339 MIMAT0000369 mmu-miR-292-5p 228003 Kbtbd10 guUUUCUCGGGGGUCAAACUCa ||||| | ||||||||| acAAAGA---CACAGUUUGAGa 2 21 9 27 [mm9:2:69521665-69521683:+] 0.5670 160 7 -18.09 -0.1476 MIMAT0000514 mmu-miR-30c 228003 Kbtbd10 cgacucucacAUCCU--ACAAAUGu | ||| ||||||| gcuuucuacaUCGGAGCUGUUUACu 2 14 418 442 [mm9:2:69522074-69522098:+] 0.5249 144 7 -9.31 -0.2925 MIMAT0000515 mmu-miR-30d 228003 Kbtbd10 gaAGGU-CAGCCCCUACAAAUGu ||:| |||| | ||||||| uuUCUACAUCGGAGCUGUUUACu 2 21 420 442 [mm9:2:69522076-69522098:+] 0.5249 163 7 -17.95 -0.2851 MIMAT0000541 mmu-miR-96 228003 Kbtbd10 ucGUUUUUACACGAU-CACGGUUu ||:|:|| | | : ||||||| ccCAGAGAUUUUCAGUGUGCCAAg 2 22 146 169 [mm9:2:69521802-69521825:+] 0.5252 160 7 -16.87 -0.8880 MIMAT0000559 mmu-miR-326 228003 Kbtbd10 ugaccuccuucccGGGUCUCc ||||||| aguguaaccgaauCCCAGAGa 2 9 133 153 [mm9:2:69521789-69521809:+] 0.5262 140 7 -13.41 -1.1184 MIMAT0004642 mmu-miR-330 228003 Kbtbd10 cggauucUGUGUCCGGGUCUCu || | ||||||| caguguaACCGAAUCCCAGAGa 2 16 132 153 [mm9:2:69521788-69521809:+] 0.5262 143 7 -19.06 -1.1184 MIMAT0000584 mmu-miR-339-5p 228003 Kbtbd10 gcACUCGAGGACCUCCUGUCCCu | :|:|::| || ||||||| uuUUGGUUUUUUGA-GACAGGGu 2 22 232 253 [mm9:2:69521888-69521909:+] 0.5252 159 7 -20.75 -0.8727 MIMAT0004651 mmu-miR-340-5p 228003 Kbtbd10 uuagucaGAGUAAC-GA-AAUAUu ||::||| || ||||| acaucuaCUUGUUGUCUAUUAUAa 2 16 464 487 [mm9:2:69522120-69522143:+] 0.5692 122 0 -9.61 -1.1026 MIMAT0000648 mmu-miR-10a 228003 Kbtbd10 guguuuAAGCCUAGA-----UGUCCCAu ||:|| |:| ||||||| uuuuuuUUUGGUUUUUUGAGACAGGGUu 2 18 227 254 [mm9:2:69521883-69521910:+] 0.5252 144 7 -15.91 -0.5853 MIMAT0000739 mmu-miR-375 228003 Kbtbd10 agugcgcUCGGCUUGCUUGUUu | :| : :|||||| guuuaguAUUCAGUUGAACAAu 2 16 191 212 [mm9:2:69521847-69521868:+] 0.5252 127 6 -9.07 -0.1795 MIMAT0004745 mmu-miR-384-5p 228003 Kbtbd10 uguaACGGAUCCUUAACAAAUGu | | | |||: ||||||| uuucUACAUCGGAGCUGUUUACu 2 20 420 442 [mm9:2:69522076-69522098:+] 0.5249 159 7 -14.23 -0.2875 MIMAT0001076 mmu-miR-384-3p 228003 Kbtbd10 uaacacUUGUUAAA-GAUCCUUa ||| |||| ||||||| guauaaAACCAUUUGCUAGGAAg 2 17 169 191 [mm9:2:69521825-69521847:+] 0.5252 163 7 -12.58 -0.7487 MIMAT0001076 mmu-miR-384-3p 228003 Kbtbd10 uaACACUUGUUAAAGAUCCUUa || ||:: | |:|||||| acUGGAAAUGCUGUUUAGGAAg 2 21 588 609 [mm9:2:69522244-69522265:+] 0.5735 144 6 -10.76 -0.1095 MIMAT0004747 mmu-miR-411 228003 Kbtbd10 gcAUG-CGAU--AUGCCAGAUGAu ||| ||| |:: |||||:| ggUACAUCUACUUGUUGUCUAUUa 2 20 461 484 [mm9:2:69522117-69522140:+] 0.5692 133 0 -15.11 -0.1249 MIMAT0003182 mmu-miR-494 228003 Kbtbd10 cuccaAAGGGCAC-AUACAAAgu |||:: | |||||| cuacaUUCUUAAGAAAUGUUUga 3 18 503 525 [mm9:2:69522159-69522181:+] 0.5692 124 0 -5.98 -0.1226 MIMAT0003727 mmu-miR-374 228003 Kbtbd10 gugaaucgucCAAC--AUAAUAUa |||| ||||||| acaucuacuuGUUGUCUAUUAUAa 2 13 464 487 [mm9:2:69522120-69522143:+] 0.5692 147 7 -9.55 -1.0325 MIMAT0003729 mmu-miR-216b 228003 Kbtbd10 aguguaaacggacGUCUCUAAa |||||||| uguaaccgaauccCAGAGAUUu 2 10 135 156 [mm9:2:69521791-69521812:+] 0.5262 145 7 -13.08 -0.4675 MIMAT0003486 mmu-miR-491 228003 Kbtbd10 ggAGUACC-UUCCCAAGGGGUGa | | || || |||||||| aaUAACGGAAACCUUUCCCCACu 2 21 525 547 [mm9:2:69522181-69522203:+] 0.5692 151 7 -19.72 -0.8143 MIMAT0004854 mmu-miR-876-5p 228003 Kbtbd10 aucacuaagUGUCUCUUUAGGu || |||||||| uggccucgaACUCAGAAAUCCg 2 14 302 323 [mm9:2:69521958-69521979:+] 0.4993 149 7 -14.97 -0.1726

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G052187 Klhl41 Mus musculus 228003

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Kbtbd10 mmu-miR-881 beg:5 end:22 pic:3' AGATAAGTCT-TTTCTGTGTCAA 5'& || |||||||||||| &5' --------GACAAAGACACAGTT 3' Kbtbd10 mmu-miR-216b beg:143 end:157 pic:3' AGTGTAAACGGACGTCTCTAAA 5'& || ||||||||| &5' ---------CC--CAGAGATTT 3' Kbtbd10 mghv-miR-M1-6 beg:104 end:120 pic:3' TTTTGGTGGAGTGTGTCAAAGT 5'& .||||.||||||| &5' --------TTCACGCAGTTTC- 3' Kbtbd10 mmu-miR-326 beg:139 end:153 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& ||| ||||||| &5' -------GAAT--CCCAGAG- 3' Kbtbd10 mmu-miR-1965 beg:360 end:380 pic:3' ACGCGGTGATGCCGGGCCGAA 5'& ||||||| || ||||||||| &5' -GCGCCACCAC-GCCCGGCTT 3' Kbtbd10 mmu-miR-384-3p beg:172 end:191 pic:3' TAACACTTGTTAAA-GATCCTTA 5'& ||| |||| ||||||| &5' ------AACCATTTGCTAGGAA- 3' Kbtbd10 mmu-miR-709 beg:317 end:339 pic:3' AGGAGGACGGAGACGGAGG 5'& ||| ||||||||||||||| &5' TCCGCCTGCCTCTGCCTCC 3' Kbtbd10 mmu-miR-876-5p beg:308 end:323 pic:3' ATCACTAAGTGTCTCTTTAGGT 5'& || |||||||| &5' ---------ACTCAGAAATCC- 3' Kbtbd10 mmu-miR-674star beg:427 end:438 pic:3' AACAAGACTCTACCCTCGACAC 5'& |||||||| &5' -------------GGAGCTGT- 3' Kbtbd10 mmu-miR-546 beg:353 end:370 pic:3' CTGAGGCACGGTGGTA 5'& |.| .| ||||||| &5' GGCG-TGCGCCACCA- 3' Kbtbd10 mmu-miR-293star beg:12 end:27 pic:3' GTTTTACAGTGTGTCAAACTCA 5'& |||||||||||| &5' ---------ACACAGTTTGAG- 3' Kbtbd10 mmu-miR-290-5p beg:13 end:27 pic:3' TTTCACGGGGGTATCAAACTCA 5'& || |||||||| &5' ----------CACAGTTTGAG- 3' Kbtbd10 mmu-miR-292-5p beg:8 end:27 pic:3' GTTTTCTCGGGGGTCAAACTCA 5'& ||||| | ||||||||| &5' --AAAGA-CA--CAGTTTGAG- 3' Kbtbd10 mghv-miR-M1-3 beg:268 end:291 pic:3' TTCGCGTTGAGGA---CGAGTGGAG 5'& || |||| ||||||.|. &5' ----GCTG-TCCTGGAGCTCACTTT 3' Kbtbd10 mghv-miR-M1-7-5p beg:528 end:550 pic:3' TCCAATGGCGTGGAGGTGGAAA 5'& || ||| || ||||.|| &5' -GGAAACCTTTCC-CCACTTT- 3' Kbtbd10 mmu-let-7a beg:318 end:332 pic:3' TTGATATGTTGGATGATGGAGT 5'& || ||.|||| &5' ----------CCGCCTGCCTC- 3' Kbtbd10 mmu-let-7b beg:318 end:336 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& ||.| | .||| ||.|||| &5' --CCGC-CTGCCT-CTGCCTC- 3' Kbtbd10 mmu-let-7c beg:311 end:332 pic:3' TTGGTATGTTGGATGATGGAGT 5'& .|| || ||.|||| &5' --TCAGAAATCCGCCTGCCTC- 3' Kbtbd10 mmu-let-7c beg:320 end:336 pic:3' TTGGTATGTTGGATGATGGAGT 5'& .|| .||| ||.|||| &5' -GCCT----GCCT-CTGCCTC- 3' Kbtbd10 mmu-let-7d beg:320 end:336 pic:3' TTGATACGT-TGGATGATGGAGA 5'& || .||| ||.|||| &5' ------GCCTGCCT-CTGCCTC- 3' Kbtbd10 mmu-let-7e beg:307 end:332 pic:3' TTGATATGTT-GGAGGATGGAGT 5'& |||| || |||.|||| &5' AACTCAGAAATCCGCCTGCCTC- 3' Kbtbd10 mmu-let-7g beg:322 end:332 pic:3' TTGACATGTTTGATGATGGAGT 5'& ||.|||| &5' --------------CTGCCTC- 3' Kbtbd10 mmu-let-7i beg:311 end:332 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& ||| | | ||.|||| &5' --CAGAA-ATCCGCCTGCCTC- 3' Kbtbd10 mmu-miR-101astar beg:581 end:593 pic:3' CGTAGTCGTGACACTATTGACT 5'& |||.||||. &5' -------------GATGACTGG 3' Kbtbd10 mmu-miR-103 beg:586 end:603 pic:3' AGTATCGGGACATGTTACGACGA 5'& ||| |||||||.| &5' --------CTGGA-AATGCTGTT 3' Kbtbd10 mmu-miR-106bstar beg:145 end:165 pic:3' CGTCGTTCATGGGTGTCACGCC 5'& ||| |.. |||||.| &5' -CAGAG---ATTTTCAGTGTG- 3' Kbtbd10 mmu-miR-107 beg:581 end:603 pic:3' ACTATCGGGACATGTTACGACGA 5'& |||. ||| |||||||.| &5' -GATGA--CTGGA-AATGCTGTT 3' Kbtbd10 mmu-miR-10a beg:231 end:254 pic:3' GTGTTTAAGCCT---AGA--TGTCCCAT 5'& ||.|| |. ||||||| &5' ------TTTGGTTTTTTGAGACAGGGT- 3' Kbtbd10 mmu-miR-10b beg:231 end:254 pic:3' GTGTTTAAGCCAAGA-----TGTCCCAT 5'& ||.||||.| ||||||| &5' ------TTTGGTTTTTTGAGACAGGGT- 3' Kbtbd10 mmu-miR-1 beg:490 end:512 pic:3' TATGTATGAAGAA--ATGTAAGGT 5'& ||.| ||| |||||||. &5' ----ATGCATCTGTCTACATTCT- 3' Kbtbd10 mmu-miR-1186b beg:131 end:150 pic:3' CACCACGTACGGAAATTAGGGT 5'& |||.| || ||||||| &5' ---GTGTAA-CCG--AATCCCA 3' Kbtbd10 mmu-miR-1190 beg:196 end:208 pic:3' CTGTCTCCCCTTGGAGTCGACT 5'& .||||.||| &5' -------------TTCAGTTGA 3' Kbtbd10 mmu-miR-1195 beg:291 end:316 pic:3' ACTCGTCCGACCGGAGCTTGAGT 5'& || ||||||||||||||||||| &5' -GACCAGGCTGGCCTCGAACTCA 3' Kbtbd10 mmu-miR-1195 beg:261 end:287 pic:3' ACTCGT--CCGACCGGAGCTTGAGT 5'& ||| ||||| ||| ||.|||| &5' --AGCCCTGGCTGTCCTGGAGCTCA 3' Kbtbd10 mmu-miR-1199 beg:297 end:318 pic:3' GGCGCGCTGGCCC-TGAGTCT 5'& || .|.|| | ||||||| &5' --GC-TGGCCTCGAACTCAGA 3' Kbtbd10 mmu-miR-1306 beg:355 end:378 pic:3' GTA-GTGGTGGTCTCGGTTGCA 5'& |.| |.|||||| ||..| &5' CGTGCGCCACCACGCCCGGC-- 3' Kbtbd10 mmu-miR-139-5p beg:274 end:296 pic:3' GACCTCT-GTGCACGTGACATCT 5'& |||||| ||| .|||||| &5' CTGGAGCTCACT----TTGTAGA 3' Kbtbd10 mmu-miR-140 beg:160 end:182 pic:3' GATGGTATCCCATTTTGGTGAC 5'& |.||| || ||||||||.| &5' -TGCCA-AGTATAAAACCATT- 3' Kbtbd10 mmu-miR-145star beg:588 end:609 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& .||| |..||||| &5' --GGAAATGCTG-TTTAGGAA- 3' Kbtbd10 mmu-miR-15bstar beg:70 end:90 pic:3' ATCTCGTCGTTTAT--TACTAAGC 5'& ||| ||| ||||||| &5' ------AGCCTATACAATGATTC- 3' Kbtbd10 mmu-miR-182 beg:157 end:189 pic:3' GCCACAC---TCAAGA--TGGT-AACGGTTT 5'& ||||| ||| |||| ||||.|.. &5' --GTGTGCCAAGTATAAAACCATTTGCTAGG 3' Kbtbd10 mmu-miR-1839-5p beg:320 end:336 pic:3' GTTCTGGACAAGATAGATGGAA 5'& .|||| |||.||| &5' ----GCCTGCC---TCTGCCT- 3' Kbtbd10 mmu-miR-1896 beg:137 end:154 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& || |.|| |||||| &5' --CCGAATCC-----CAGAGA- 3' Kbtbd10 mmu-miR-1929 beg:262 end:282 pic:3' GAGACGAGATATTTCAGGATCTT 5'& || ||. |||||.||. &5' ----GCCCTGGCT-GTCCTGGAG 3' Kbtbd10 mmu-miR-1935 beg:312 end:336 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& ||| ||||||| |||||||||| &5' AGAAATCCGCCTGCCTCTGCCT 3' Kbtbd10 mmu-miR-1937a beg:339 end:353 pic:3' ACCCCCGAGCA-GGCCCTAA 5'& || |.|||||| &5' ---------GTGCTGGGATT 3' Kbtbd10 mmu-miR-1942 beg:485 end:502 pic:3' GTTGGTCTACTTC-TGTAGACT 5'& ||||| .|||||| &5' -------ATGAAATGCATCTG- 3' Kbtbd10 mmu-miR-1946a beg:357 end:379 pic:3' TTTTCACACACGGTGGTGACGGGCCGA 5'& ||| |||||||| |||||||| &5' ------GTGCGCCACCAC-GCCCGGCT 3' Kbtbd10 mmu-miR-1946b beg:350 end:378 pic:3' TTTTCGTACACGGTGGTGACGGGCCG 5'& |||.||.|| |||||||| ||||||| &5' AAAGGCGTGCGCCACCAC-GCCCGGC 3' Kbtbd10 mmu-miR-1954 beg:243 end:263 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& .|||||||.|| ||||.| &5' GACAGGGTTTC--TCTGTA-- 3' Kbtbd10 mmu-miR-1955 beg:330 end:353 pic:3' TTTTCGACGTCACG--TAGGACCCTGA 5'& |||| .| ||||||.| &5' -----CTGCCTCCCGAGTGCTGGGATT 3' Kbtbd10 mmu-miR-1959 beg:491 end:513 pic:3' GAGGT-GACTCGATGTAGGGG 5'& | || ||| ||||||.|.. &5' -TGCATCTGT-CTACATTCTT 3' Kbtbd10 mmu-miR-1961 beg:322 end:332 pic:3' AAGATTGATGATGGAGT 5'& ||.|||| &5' ---------CTGCCTC- 3' Kbtbd10 mmu-miR-1967 beg:142 end:160 pic:3' CGTAGAAGAGGGGTC-CTAGGAGT 5'& .||||| |||..||| &5' ---------TCCCAGAGATTTTCA 3' Kbtbd10 mmu-miR-206 beg:490 end:512 pic:3' GGTGTGT-GAAGGAATGTAAGGT 5'& |..|| || | |||||||. &5' --ATGCATCTGTC-TACATTCT- 3' Kbtbd10 mmu-miR-2145 beg:291 end:310 pic:3' TTGGTCCGGGCTGGGACGA 5'& .|||||| |.|.|| | &5' GACCAGG-CTGGCCTCG-- 3' Kbtbd10 mmu-miR-216a beg:337 end:354 pic:3' AGTGTCAACGGTCGACTCTAAT 5'& | ||||.||||| &5' --------GAGTGCTGGGATTA 3' Kbtbd10 mmu-miR-24 beg:536 end:556 pic:3' GACAAGGACGACTTGACTCGGT 5'& |||| .|||||.| &5' ---TTCCCCACT--TTGAGCTA 3' Kbtbd10 mmu-miR-2861 beg:318 end:338 pic:3' GGCGGGCGGCGGTCCGGGG 5'& |||||.||| |. |||.| &5' CCGCCTGCCTCT--GCCTC 3' Kbtbd10 mmu-miR-298 beg:312 end:336 pic:3' CCCTTCTTGT--CGGGAGGAGACGG 5'& |||| |||. |||||||| &5' ----AGAAATCCGCCTGCCTCTGCC 3' Kbtbd10 mmu-miR-299star beg:288 end:299 pic:3' TACATACACCCTGCCATTTGGT 5'& |||.|||| &5' --------------GTAGACCA 3' Kbtbd10 mmu-miR-300 beg:443 end:455 pic:3' CTTCTCTCGAACGGGAACGTAT 5'& ||.|||.|| &5' ------------CCTTTGTAT- 3' Kbtbd10 mmu-miR-30a beg:423 end:442 pic:3' GAAGGTCAGCTCCTACAAATGT 5'& || ||| | ||||||| &5' ----CA-TCGGAGCTGTTTAC- 3' Kbtbd10 mmu-miR-30astar beg:583 end:595 pic:3' CGACGTTTGTAGGCTGACTTTC 5'& .|||||.|| &5' ------------TGACTGGAA- 3' Kbtbd10 mmu-miR-30b beg:427 end:442 pic:3' TCGACTCACATCCT--ACAAATGT 5'& ||| ||||||| &5' -----------GGAGCTGTTTAC- 3' Kbtbd10 mmu-miR-30c beg:427 end:442 pic:3' CGACTCTCACATCCT--ACAAATGT 5'& ||| ||||||| &5' ------------GGAGCTGTTTAC- 3' Kbtbd10 mmu-miR-30d beg:423 end:442 pic:3' GAAGGTCAGCCCCTACAAATGT 5'& || |||| | ||||||| &5' ----CA-TCGGAGCTGTTTAC- 3' Kbtbd10 mmu-miR-30e beg:427 end:442 pic:3' GAAGGTCAGTTCCT--ACAAATGT 5'& ||| ||||||| &5' -----------GGAGCTGTTTAC- 3' Kbtbd10 mmu-miR-30estar beg:583 end:595 pic:3' CGACATTTGTAGGCTGACTTTC 5'& .|||||.|| &5' ------------TGACTGGAA- 3' Kbtbd10 mmu-miR-323-5p beg:354 end:380 pic:3' CGCTTGCGC-GGTGCCTGGTGGA 5'& ||| .||| ||||| | .|.| &5' GCGTGCGCCACCACGCCCGGCTT 3' Kbtbd10 mmu-miR-338-3p beg:333 end:350 pic:3' GTTGTTTTAGTGACTACGACCT 5'& || | .||||||. &5' --------TCCCGAGTGCTGGG 3' Kbtbd10 mmu-miR-339-5p beg:233 end:253 pic:3' GCACTCGAGGACCTCCTGTCCCT 5'& .|.|..| || ||||||| &5' ----GGTTTTTTGA-GACAGGG- 3' Kbtbd10 mmu-miR-3475 beg:609 end:630 pic:3' AAGTTTGGTACACGGAGGTCT 5'& .|| ||| |.|||||| &5' --TAATAAATGAGTCTCCAG- 3' Kbtbd10 mmu-miR-375 beg:365 end:386 pic:3' AGTGCGCTCGGCTT-GCTTGTTT 5'& ||||| |||. .|||||| &5' -CACGC---CCGGCTTGAACAA- 3' Kbtbd10 mmu-miR-381 beg:443 end:455 pic:3' TGTCTCTCGAACGGGAACATAT 5'& ||.|||||| &5' ------------CCTTTGTAT- 3' Kbtbd10 mmu-miR-384-3p beg:587 end:609 pic:3' TAACACTTGTTAA-AGATCCTTA 5'& || ||| |.|||||| &5' --TG-GAAATGCTGTTTAGGAA- 3' Kbtbd10 mmu-miR-384-5p beg:427 end:442 pic:3' TGTAACGGATCCTTAACAAATGT 5'& |||. ||||||| &5' ----------GGAGCTGTTTAC- 3' Kbtbd10 mmu-miR-452 beg:280 end:297 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |||| ||.||.|.|| &5' --CTCA-----CTTTGTAGAC- 3' Kbtbd10 mmu-miR-455star beg:447 end:468 pic:3' GCTACATCAGGTTTCCGTGTAT 5'& |||| ||. ||||.|||| &5' ---TGTATTCTTAAGGTACAT- 3' Kbtbd10 mmu-miR-497 beg:581 end:603 pic:3' ATGTTTGGTGTCAC--ACGACGAC 5'& |.|. || | |||||.| &5' ---AGATGACTGGAAATGCTGTT- 3' Kbtbd10 mmu-miR-505 beg:9 end:34 pic:3' TCTTTTG-GTCG--TTCACAACTGC 5'& ||.|| |||. .|| | ||.| &5' --AAGACACAGTTTGAGAGGTGGC- 3' Kbtbd10 mmu-miR-509-5p beg:108 end:129 pic:3' TACTAACGGTGTA----AGACCTCAT 5'& |.|| |||||.||| &5' --------CGCAGTTTCTCTGGGGTA 3' Kbtbd10 mmu-miR-539 beg:106 end:123 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& |||.| |.||||||. &5' -CACGC-------AGTTTCTCT 3' Kbtbd10 mmu-miR-540-3p beg:293 end:314 pic:3' GGTCCTAGCTGGAGACTGGA 5'& ||||| .|.|||| ||. &5' CCAGGC-TGGCCTCGAACT- 3' Kbtbd10 mmu-miR-547 beg:153 end:170 pic:3' GAGTGAGTTTCTACATGGTTC 5'& .||| .|||.||||| &5' ----TTCA---GTGTGCCAAG 3' Kbtbd10 mmu-miR-592 beg:11 end:22 pic:3' TGTAGTAGCGTATAACTGTGTTA 5'& ||||||.| &5' ---------------GACACAGT 3' Kbtbd10 mmu-miR-674 beg:142 end:164 pic:3' ATGTGGTGAGGGT-----AGAGTCACG 5'& ||||| |.||||||. &5' --------TCCCAGAGATTTTCAGTGT 3' Kbtbd10 mmu-miR-706 beg:100 end:123 pic:3' AAAAAACTCTGTCC----CAAAGAGA 5'& |.||. |||||||| &5' ------GGGATTCACGCAGTTTCTCT 3' Kbtbd10 mmu-miR-706 beg:235 end:260 pic:3' AAAAAACTCTGTCCCAAAGAGA 5'& |||||||||||||||||||||| &5' TTTTTTGAGACAGGGTTTCTCT 3' Kbtbd10 mmu-miR-872 beg:545 end:569 pic:3' GGACTTGAT--TGTTCATTGGAA 5'& .|||.||| |||.| ||.||| &5' -TTGAGCTACAACAGG-AATCTT 3' Kbtbd10 mmu-miR-875-3p beg:143 end:161 pic:3' GTATCGGAGTCA-TAAAAGTCC 5'& || ||| |||||||| &5' -----CC-CAGAGATTTTCAG- 3' Kbtbd10 mmu-miR-880 beg:107 end:129 pic:3' AGATGAGTCTCTCCTACCTCAT 5'& || ||| |||.||| &5' ---ACGCAGTTTCTCTGGGGTA 3' Kbtbd10 mmu-miR-881star beg:240 end:261 pic:3' TCTACACTGACAATAGAGAGAC 5'& || ||| .|.|||||| &5' ---TGAGACAGG-GTTTCTCTG 3' Kbtbd10 mmu-miR-882 beg:108 end:123 pic:3' TGATTACGCGATTGAGAGAGGA 5'& ||| | |.||||. &5' -------CGC--AGTTTCTCT- 3' Kbtbd10 mmu-miR-883b-5p beg:143 end:163 pic:3' ACTGACGATGGGT----AAGAGTCAT 5'& |||| ||.|||||. &5' ---------CCCAGAGATTTTCAGTG 3' Kbtbd10 mmu-miR-98 beg:322 end:332 pic:3' TTGTTATGTTGAATGATGGAGT 5'& ||.|||| &5' --------------CTGCCTC- 3' Kbtbd10 mmu-miR-99bstar beg:402 end:422 pic:3' GCCTGGGTGTCTGTGCTCGAAC 5'& |.|| ||| .|||||| &5' ----CTCAAAGAAGTGAGCTT- 3' Kbtbd10 mmu-miR-9star beg:34 end:55 pic:3' TGAAAGCCAATAGA-TCGAAATA 5'& |.|| .|||||| &5' ----TTGGGACAAGAGGCTTTA- 3' Kbtbd10 mmu-miR-491 beg:528 end:548 pic:3' GGAGTACCTTCCC-AAGGGGTGA 5'& |||| ||||||||| &5' ------GGAAACCTTTCCCCACT 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Klhl41 RAID00003700 mmu-miR-30b-5p miRNA MIMAT0000130 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID00137216 mmu-miR-876-5p miRNA MIMAT0004854 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID00280133 mmu-miR-184-3p miRNA MIMAT0000213 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID00718484 mmu-miR-706 miRNA MIMAT0003496 Klhl41 mRNA 228003 CLIP-seq 0.5483 Klhl41 RAID00949662 mmu-miR-340-5p miRNA MIMAT0004651 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID01160507 mmu-miR-374b-5p miRNA MIMAT0003727 Klhl41 mRNA 228003 Prediction 0.2202 Klhl41 RAID01164057 mmu-miR-7085-5p miRNA MIMAT0028076 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID01399058 mmu-miR-290a-5p miRNA MIMAT0000366 Klhl41 mRNA 228003 CLIP-seq//Prediction 0.6308 Klhl41 RAID01417185 mmu-miR-30d-5p miRNA MIMAT0000515 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID01552291 mmu-miR-3082-5p miRNA MIMAT0014872 Klhl41 mRNA 228003 CLIP-seq 0.5483 Klhl41 RAID01639857 mmu-miR-411-5p miRNA MIMAT0004747 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID01921884 mmu-miR-1968-3p miRNA MIMAT0017350 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID02005941 mmu-miR-30a-5p miRNA MIMAT0000128 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID02086958 mmu-miR-339-5p miRNA MIMAT0000584 Klhl41 mRNA 228003 CLIP-seq//Prediction 0.6308 Klhl41 RAID02299089 mmu-miR-145a-5p miRNA MIMAT0000157 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID02315923 mmu-miR-1946a miRNA MIMAT0009412 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID02318514 mmu-miR-96-5p miRNA MIMAT0000541 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID02354079 mmu-miR-5135 miRNA MIMAT0020646 Klhl41 mRNA 228003 CLIP-seq 0.5483 Klhl41 RAID02380017 mmu-miR-182-5p miRNA MIMAT0000211 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID02406827 mmu-miR-30c-5p miRNA MIMAT0000514 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID02427407 mmu-miR-186-5p miRNA MIMAT0000215 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID02451484 mmu-miR-216b-5p miRNA MIMAT0003729 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID02505699 mmu-miR-7003-5p miRNA MIMAT0027910 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID02643355 mmu-miR-384-5p miRNA MIMAT0004745 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID02905159 mmu-miR-330-5p miRNA MIMAT0004642 Klhl41 mRNA 228003 Prediction 0.2202 Klhl41 RAID02922941 mmu-miR-10a-5p miRNA MIMAT0000648 Klhl41 mRNA 228003 CLIP-seq//Prediction 0.6308 Klhl41 RAID03030382 mmu-miR-665-3p miRNA MIMAT0003733 Klhl41 mRNA 228003 CLIP-seq 0.5483 Klhl41 RAID03171386 mmu-miR-384-3p miRNA MIMAT0001076 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID03250379 mmu-miR-491-5p miRNA MIMAT0003486 Klhl41 mRNA 228003 Prediction 0.2202 Klhl41 RAID03272069 mmu-miR-292a-5p miRNA MIMAT0000369 Klhl41 mRNA 228003 CLIP-seq//Prediction 0.6308 Klhl41 RAID03321143 mmu-miR-10b-5p miRNA MIMAT0000208 Klhl41 mRNA 228003 CLIP-seq//Prediction 0.6308 Klhl41 RAID03417358 mmu-miR-326-3p miRNA MIMAT0000559 Klhl41 mRNA 228003 Prediction 0.2202 Klhl41 RAID03642014 mmu-miR-375-3p miRNA MIMAT0000739 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID03969649 mmu-miR-30e-5p miRNA MIMAT0000248 Klhl41 mRNA 228003 Prediction 0.1828 Klhl41 RAID04002609 mmu-miR-494-3p miRNA MIMAT0003182 Klhl41 mRNA 228003 Prediction 0.1828