DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004545 mmu-miR-200b* 71300 Rnf148 agGUUACGACGGGUCA-UUCUAc | || ||| ||||| ||||| cuCUAUCCUG-CCAGUGAAGAUg 2 21 86 107 [mm9:6:23603938-23603959:-] 0.5859 134 0 -21.06 -0.6913 MIMAT0000367 mmu-miR-291a-5p 71300 Rnf148 ucUCUCCCGGAGGUGAAACUac || || | ::|||||| gaAGUUGG--UGUGCUUUGAaa 3 21 107 126 [mm9:6:23603919-23603938:-] 0.5994 125 0 -9.85 -0.1483 MIMAT0000569 mmu-miR-330* 71300 Rnf148 agagACGUCCGGGACACGAAACg || || : ||||||||| aagaUGAAGUUGGUGUGCUUUGa 2 20 102 124 [mm9:6:23603921-23603943:-] 0.5994 159 7 -15.40 -0.8352 MIMAT0004659 mmu-miR-10a* 71300 Rnf148 auaagggGAUCUAUGCUUAAAc :||| |||||||| auuaaaaUUAG--ACGAAUUUg 2 16 24 43 [mm9:6:23604002-23604021:-] 0.5595 148 7 -14.09 -0.6639 MIMAT0004786 mmu-miR-540-5p 71300 Rnf148 ugucucagucucccACUGGGAAc |||||||| auccaaagcaaacaUGACCCUUa 2 10 59 81 [mm9:6:23603964-23603986:-] 0.5723 145 7 -13.11 -1.0940 MIMAT0003189 mmu-miR-291b-5p 71300 Rnf148 ccUCUCCCGGAGGUGAAACUag || || | ::|||||| gaAGUUGG--UGUGCUUUGAaa 3 21 107 126 [mm9:6:23603919-23603938:-] 0.5994 125 0 -10.88 -0.1483 MIMAT0004189 mmu-miR-693-3p 71300 Rnf148 aaugucgguguagacUUUCGAcg |||||| gugugcuuugaaaauAAAGCUac 3 9 114 136 [mm9:6:23603909-23603931:-] 0.5994 120 0 -12.30 -0.1021 MIMAT0004236 mmu-miR-741 71300 Rnf148 agauguaucuuaccgUAGAGAGu ||||||| ----gaagcccagagAUCUCUCc 2 9 1 19 [mm9:6:23604026-23604044:-] 0.6153 140 7 -12.09 -0.5292 MIMAT0004237 mmu-miR-742 71300 Rnf148 aaaugggUCGUACCAC-CGAAAg ||: ||||| ||||| aagaugaAGU-UGGUGUGCUUUg 2 16 102 123 [mm9:6:23603922-23603943:-] 0.5994 121 0 -15.06 -0.9663 MIMAT0004238 mmu-miR-743a 71300 Rnf148 agaugAGUCGAACCACA-GAAAg | | ||||||| |||| gaagaUGAAGUUGGUGUGCUUUg 2 18 101 123 [mm9:6:23603922-23603944:-] 0.5994 125 0 -14.26 -0.9632 MIMAT0004840 mmu-miR-743b-3p 71300 Rnf148 agaUAAGUCGUACUACA-GAAAg || ||: ||:||| |||| aagAUGAAGU-UGGUGUGCUUUg 2 20 102 123 [mm9:6:23603922-23603943:-] 0.5994 121 0 -11.95 -0.9663 MIMAT0004861 mmu-miR-877 71300 Rnf148 gggacGCGGUAGAGGAGAUg | ::| :||||||| augacCCUUAGUUCCUCUAu 2 16 72 91 [mm9:6:23603954-23603973:-] 0.5723 147 7 -19.02 -0.7521 MIMAT0007864 mmu-miR-1897-5p 71300 Rnf148 ggGGGAGA-AAGAGGUAGGUUUc | || | | | |||||||| cuCACUGUGCUGUACAUCCAAAg 2 21 44 66 [mm9:6:23603979-23604001:-] 0.5659 151 7 -19.39 -0.2700 MIMAT0009440 mmu-miR-1967 71300 Rnf148 cguagaagagGGGUC-CUAG-GAGu ||||| |||| ||| ------gaagCCCAGAGAUCUCUCc 2 14 1 19 [mm9:6:23604026-23604044:-] 0.6153 120 0 -19.37 -0.8003 MIMAT0012771 mmu-miR-432 71300 Rnf148 gaCGGGUGACUAGAUGAGGU-UCu ||||| ||||| ||||| || aaGCCCAGAGAUCU-CUCCACAGa 2 22 2 24 [mm9:6:23604021-23604043:-] 0.6153 139 0 -28.01 -1.0663 MIMAT0015645 mmu-miR-3473 71300 Rnf148 ccgacUCGGUAGAGAGGu || |||||||| agcccAGAGAUCUCUCCa 2 14 3 20 [mm9:6:23604025-23604042:-] 0.6153 149 7 -20.07 -0.7419 MIMAT0000140 mmu-miR-128 71300 Rnf148 uuUCU-C-UGGCCAAGUGACACu ||| | |:: | |||||||| uuAGACGAAUUUGCUCACUGUGc 2 20 31 53 [mm9:6:23603992-23604014:-] 0.5659 153 7 -15.64 -0.5240 MIMAT0000214 mmu-miR-185 71300 Rnf148 aguccuugacggaaAGAGAGGu ||||||| --gaagcccagagaUCUCUCCa 2 9 1 20 [mm9:6:23604025-23604044:-] 0.6153 140 7 -16.44 -0.7530 MIMAT0000220 mmu-miR-190 71300 Rnf148 uggaUUAUAUAGUUUGUAUAGu |||| | | ||||||| ugaaAAUAAAGC-UACAUAUCa 2 19 122 142 [mm9:6:23603903-23603923:-] 0.5994 152 7 -10.07 -0.8735 MIMAT0000559 mmu-miR-326 71300 Rnf148 ugaccucCUUCCCGGGUCUCc ||| |||||||| -------GAA--GCCCAGAGa 2 15 1 12 [mm9:6:23604033-23604044:-] 0.6712 147 7 -15.83 -0.8274 MIMAT0004642 mmu-miR-330 71300 Rnf148 cggauucugugUCCGGGUCUCu | |||||||| ----------gAAGCCCAGAGa 2 12 1 12 [mm9:6:23604033-23604044:-] 0.6712 147 7 -19.57 -0.8309 MIMAT0004847 mmu-miR-882 71300 Rnf148 ugaUUACGCG-AUUGAGAGAGGa :| || | |: ||||||| ---GAAGCCCAGAGAUCUCUCCa 2 20 1 20 [mm9:6:23604025-23604044:-] 0.6153 146 7 -13.69 -0.7456 MIMAT0004852 mmu-miR-190b 71300 Rnf148 uugggUUAUAGUU---UGUAUAGu || || || ||||||| cuuugAAAAUAAAGCUACAUAUCa 2 17 119 142 [mm9:6:23603903-23603926:-] 0.5994 147 7 -10.66 -0.8700 MIMAT0004895 mmu-miR-590-5p 71300 Rnf148 gaCGUGAAAAUACUUA-UUCGAg |::|||| | ||| ||||| guGUGCUUUGA-AAAUAAAGCUa 2 21 114 135 [mm9:6:23603910-23603931:-] 0.5994 126 0 -10.94 -1.0731 MIMAT0004896 mmu-miR-590-3p 71300 Rnf148 ugaucgaauauguAUUUUAAu ||||||| ucucuccacagauUAAAAUUa 2 9 13 33 [mm9:6:23604012-23604032:-] 0.5595 140 7 -4.64 -0.4785

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101772 Rnf148 Mus musculus 71300

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf148 RAID00042760 mmu-miR-540-5p miRNA MIMAT0004786 Rnf148 mRNA 71300 Prediction 0.1828 Rnf148 RAID00491929 mmu-miR-882 miRNA MIMAT0004847 Rnf148 mRNA 71300 Prediction 0.1828 Rnf148 RAID00785572 mmu-miR-653-3p miRNA MIMAT0017284 Rnf148 mRNA 71300 Prediction 0.1828 Rnf148 RAID01328735 mmu-miR-190b-5p miRNA MIMAT0004852 Rnf148 mRNA 71300 Prediction 0.1828 Rnf148 RAID01654274 mmu-miR-298-3p miRNA MIMAT0017007 Rnf148 mRNA 71300 Prediction 0.1828 Rnf148 RAID02016998 mmu-miR-190a-5p miRNA MIMAT0000220 Rnf148 mRNA 71300 Prediction 0.1828 Rnf148 RAID02294655 mmu-miR-590-3p miRNA MIMAT0004896 Rnf148 mRNA 71300 Prediction 0.1828 Rnf148 RAID02598078 mmu-miR-590-5p miRNA MIMAT0004895 Rnf148 mRNA 71300 Prediction 0.1828 Rnf148 RAID03095835 mmu-miR-330-5p miRNA MIMAT0004642 Rnf148 mRNA 71300 Prediction 0.1828 Rnf148 RAID03107035 mmu-miR-128-3p miRNA MIMAT0000140 Rnf148 mRNA 71300 Prediction 0.1828 Rnf148 RAID03764272 mmu-miR-185-5p miRNA MIMAT0000214 Rnf148 mRNA 71300 Prediction 0.1828 Rnf148 RAID03887676 mmu-miR-326-3p miRNA MIMAT0000559 Rnf148 mRNA 71300 Prediction 0.1828