DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004538 mmu-miR-10b* 66381 Rnf113a2 auaagggGAUCUUA---GCUUAGAc ||| | | :|||||| uuuauagCUAUAUUUUCUGAAUCUa 2 16 181 205 [mm9:12:85759480-85759504:+] 0.5315 126 6 -9.11 -0.2135 MIMAT0004579 mmu-miR-302a* 66381 Rnf113a2 cgUUCAUGUUGGUGCAAAU-UCa ||| || :| :||||| || uaAAGAACUCUCCUGUUUAUAGc 2 21 166 188 [mm9:12:85759465-85759487:+] 0.5257 124 0 -10.30 -0.9551 MIMAT0004617 mmu-miR-148a* 66381 Rnf113a2 ucagccucacagagUCUUGAaa |||||| cugaaucuaaauaaAGAACUag 3 9 197 218 [mm9:12:85759496-85759517:+] 0.5372 120 0 -6.65 -0.1120 MIMAT0003387 mmu-miR-376a* 66381 Rnf113a2 ugaguaucuuccuCUUAGAUgg ||||||| agcuauauuuucuGAAUCUAaa 3 10 186 207 [mm9:12:85759485-85759506:+] 0.5315 125 0 -8.26 -0.1352 MIMAT0003388 mmu-miR-376b* 66381 Rnf113a2 auugguAUCUUCCUUAUAGGUg |||:| ||||||||| guuuucUAGGAAGAAUAUCCAa 2 17 97 118 [mm9:12:85759396-85759417:+] 0.5384 168 7 -17.72 -1.1360 MIMAT0002106 mmu-miR-465a-5p 66381 Rnf113a2 agUGUAGUCACGGUAAGAUUUAu |:||: | : | ||||||| cuAUAUU-UUCUGAAUCUAAAUa 2 22 188 209 [mm9:12:85759487-85759508:+] 0.5315 147 7 -9.78 -1.2894 MIMAT0003129 mmu-miR-485* 66381 Rnf113a2 cucuccucucggcacAUACUGa |||||| ccaaguuuuguuuuaUAUGACa 2 8 115 136 [mm9:12:85759414-85759435:+] 0.5384 120 6 -8.19 -0.1700 MIMAT0005295 mmu-miR-376c* 66381 Rnf113a2 auuuguAUCUUCCUUAUAGGUg |||:| ||||||||| guuuucUAGGAAGAAUAUCCAa 2 17 97 118 [mm9:12:85759396-85759417:+] 0.5384 168 7 -16.92 -1.1360 MIMAT0004790 mmu-miR-503* 66381 Rnf113a2 gguCCGUCACCUUUGUUAUGag || : ||||| |||||| gcuGGAGAUGGAAUCAAUACag 3 20 138 159 [mm9:12:85759437-85759458:+] 0.5257 147 0 -17.24 -0.1357 MIMAT0003373 mmu-miR-302b* 66381 Rnf113a2 ucuuucguaaggguacAAUUUCa |||||| aaucaauacaguuaacUUAAAGa 2 8 149 171 [mm9:12:85759448-85759470:+] 0.5257 120 6 -3.70 -0.1498 MIMAT0003375 mmu-miR-302c* 66381 Rnf113a2 cguccauugggguacAAUUUCg |||||| aucaauacaguuaacUUAAAGa 2 8 150 171 [mm9:12:85759449-85759470:+] 0.5257 120 6 -9.09 -0.1527 MIMAT0003733 mmu-miR-665 66381 Rnf113a2 ucccuggagUCGGAGGACca | :|||||| acuuaaagaACUCUCCUGuu 3 12 163 182 [mm9:12:85759462-85759481:+] 0.5257 123 0 -11.39 -0.1170 MIMAT0003474 mmu-miR-694 66381 Rnf113a2 gaagucCGUUGUAAAAGuc || |:|||||| uuuauaGCUAUAUUUUCug 3 14 181 199 [mm9:12:85759480-85759498:+] 0.5315 133 0 -9.25 -0.1542 MIMAT0004839 mmu-miR-743b-5p 66381 Rnf113a2 acUACCUGUG-GUCAGACUUGu || | :|: : ||||||: uuAUAGCUAUAUUUUCUGAAUc 2 20 182 203 [mm9:12:85759481-85759502:+] 0.5315 126 0 -7.69 -0.2001 MIMAT0004841 mmu-miR-871 66381 Rnf113a2 guACUGACCGUG-AUUAGACUUAu | |: | :|: | ||||||| guUUAUAGCUAUAUUUUCUGAAUc 2 22 180 203 [mm9:12:85759479-85759502:+] 0.5315 144 7 -10.13 -1.1732 MIMAT0004871 mmu-miR-465b-5p 66381 Rnf113a2 gucuagucguggUAAGAUUUAu | ||||||| cuauauuuucugAAUCUAAAUa 2 11 188 209 [mm9:12:85759487-85759508:+] 0.5315 142 7 -6.64 -1.2910 MIMAT0004873 mmu-miR-465c-5p 66381 Rnf113a2 gucuagucgcggUAAGAUUUAu | ||||||| cuauauuuucugAAUCUAAAUa 2 11 188 209 [mm9:12:85759487-85759508:+] 0.5315 142 7 -6.64 -1.2910 MIMAT0004891 mmu-miR-509-3p 66381 Rnf113a2 gguaauGUCUUUACAG-UUAGu || || |||| |||| auguccCAUAAUUGUCAAAUCu 2 16 15 36 [mm9:12:85759314-85759335:+] 0.5024 123 0 -8.54 -1.0648 MIMAT0004938 mmu-miR-875-3p 66381 Rnf113a2 guAUCGGAGUCAUAAAAGUCc |||| :| ||||||| | uaUAGC--UA-UAUUUUCUGa 2 20 183 200 [mm9:12:85759482-85759499:+] 0.5315 122 0 -9.93 -0.1215 MIMAT0005842 mmu-miR-669h-3p 66381 Rnf113a2 acacguACACACAUAUAC-GUAu ||| | |||||| ||| aaguuuUGU-UUUAUAUGACAUg 2 17 117 138 [mm9:12:85759416-85759437:+] 0.5321 122 0 -9.25 -0.7663 MIMAT0007864 mmu-miR-1897-5p 66381 Rnf113a2 gggggagaaagagGUAGGUUUc :||||||: uuucuaggaagaaUAUCCAAGu 2 10 99 120 [mm9:12:85759398-85759419:+] 0.5384 125 0 -11.73 -0.1042 MIMAT0009403 mmu-miR-1939 66381 Rnf113a2 cacGUA--ACC-GUCCCUUAGcu ||| ||| | |||||| ugaCAUGCUGGAGAUGGAAUCaa 3 18 132 154 [mm9:12:85759431-85759453:+] 0.5321 127 0 -12.31 -0.1523 MIMAT0012771 mmu-miR-432 66381 Rnf113a2 gacgggugacuagaugAGGUUCu |||||| uuuucuaggaagaauaUCCAAGu 2 8 98 120 [mm9:12:85759397-85759419:+] 0.5384 120 6 -11.27 -0.1236 MIMAT0000142 mmu-miR-9 66381 Rnf113a2 aguauGUCGAUCUAUUGGUUUCu || || | |||||||| uugguCAUCU-CA-AACCAAAGc 2 19 53 73 [mm9:12:85759352-85759372:+] 0.4945 146 7 -10.39 -0.8540 MIMAT0000247 mmu-miR-143 66381 Rnf113a2 cucGAUGUCACGA--AGUAGAGu :| : || :| ||||||| uacUUUUUGUUUUGGUCAUCUCa 2 19 42 64 [mm9:12:85759341-85759363:+] 0.4945 141 7 -13.38 -0.6062 MIMAT0000582 mmu-miR-338-3p 66381 Rnf113a2 guuguUUUAGUGACUACGACCu | || || ||||||| guuuuAUAUGAC--AUGCUGGa 2 18 124 143 [mm9:12:85759423-85759442:+] 0.5321 146 7 -13.57 -0.7570 MIMAT0000748 mmu-miR-383 66381 Rnf113a2 ucGGUGUC-A-GUGGAAGAC-UAGa ::|:|| | :|::||||| ||| guUUAUAGCUAUAUUUUCUGAAUCu 2 21 180 204 [mm9:12:85759479-85759503:+] 0.5315 122 0 -17.53 -1.2230 MIMAT0001076 mmu-miR-384-3p 66381 Rnf113a2 uaacacuuguuAAAGAUCCUUa |||||||||| aaauacuaaguUUUCUAGGAAg 2 12 88 109 [mm9:12:85759387-85759408:+] 0.5242 155 7 -12.08 -1.1408 MIMAT0003738 mmu-miR-496 66381 Rnf113a2 cucuaaccgguacauUAUGAGu |||||| auaaagaacuagcucAUACUCu 2 8 207 228 [mm9:12:85759506-85759527:+] 0.5372 120 6 -8.30 -0.1302 MIMAT0003456 mmu-miR-495 66381 Rnf113a2 uuCUUCACGU-GGUAC-AAACAAa |||| :| ||| | |||||| agGAAGAAUAUCCAAGUUUUGUUu 2 21 104 127 [mm9:12:85759403-85759426:+] 0.5384 127 6 -14.03 -0.9650

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G073454 Rnf113a2 Mus musculus 66381

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf113a2 mmu-miR-376bstar beg:100 end:118 pic:3' ATTGGTATCTTCCTTATAGGTG 5'& |||.| ||||||||| &5' ------TAGGAAGAATATCCA- 3' Rnf113a2 mmu-miR-376cstar beg:100 end:118 pic:3' ATTTGTATCTTCCTTATAGGTG 5'& |||.| ||||||||| &5' ------TAGGAAGAATATCCA- 3' Rnf113a2 mmu-miR-338-3p beg:127 end:144 pic:3' GTTGTTTTAGTGAC-TACGACCT 5'& .|. |||||||| &5' ---------TATGACATGCTGGA 3' Rnf113a2 mmu-miR-384-3p beg:96 end:109 pic:3' TAACACTTGTTAAAGATCCTTA 5'& |||||||||| &5' -----------TTTCTAGGAA- 3' Rnf113a2 mmu-miR-106b beg:30 end:48 pic:3' TAGACGTGACAGTCGTGAAAT 5'& |||| || ||.||||| &5' ATCT-CAA----AGTACTTT- 3' Rnf113a2 mmu-miR-122 beg:211 end:228 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& ||.| |||.||||.| &5' -----ACTAGC-TCATACTCTA 3' Rnf113a2 mmu-miR-141star beg:148 end:172 pic:3' AGGTTGTGACG--TGACCTTCTAC 5'& .|||.|| |. ||| |||| &5' -TCAATACAGTTAACTTAAAGA-- 3' Rnf113a2 mmu-miR-145star beg:93 end:109 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||| ||||.||||| &5' -------AGT-TTTCTAGGAA- 3' Rnf113a2 mmu-miR-154 beg:149 end:168 pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& |||.|| | ||||.|| &5' ------CAATACAGTTAACTTA 3' Rnf113a2 mmu-miR-17 beg:30 end:48 pic:3' GATGGACGTGACATTCGTGAAAC 5'& |.|| || |||.||||| &5' --ATCT-CA----AAGTACTTT- 3' Rnf113a2 mmu-miR-199a-5p beg:129 end:143 pic:3' CTTGTCCATCAGACT-TGTGACCC 5'& ||| |..|||| &5' ------------TGACATGCTGG- 3' Rnf113a2 mmu-miR-22star beg:92 end:113 pic:3' ATTTCGAACGGTGACTTCTTGA 5'& |||.|| |.| ||||||. &5' --AAGTTTTCTAG-GAAGAAT- 3' Rnf113a2 mmu-miR-295 beg:26 end:48 pic:3' TCTGAGTTTTCATCATCGTGAAA 5'& ||||| ||.||||| &5' ----TCAAATCTCAAAGTACTTT 3' Rnf113a2 mmu-miR-465b-5p beg:182 end:203 pic:3' GTCTAGTCG-TGGT-AAGATTTAT 5'& .||| |. ||||.||| &5' -----TAGCTATATTTTCTGAAT- 3' Rnf113a2 mmu-miR-679 beg:63 end:84 pic:3' TGGTTCTCAGTGGAGTGTCAGG 5'& ||||| || || |||||||. &5' ACCAA-AG-CAA-TCACAGTT- 3' Rnf113a2 mmu-miR-680 beg:1 end:21 pic:3' GGGGGTACAGTCGTCTACGGG 5'& |||| .|||||.|| &5' ---CCATTACT-TAGATGTCC 3' Rnf113a2 mmu-miR-696 beg:64 end:81 pic:3' GGGTGTCGTTCGTGTGCG 5'& ||| ||||| |||| &5' -CCAAAGCAATCACA--- 3' Rnf113a2 mmu-miR-804 beg:209 end:225 pic:3' AGGTCCACTCCTTG-TTGAGTGT 5'& |||| |.||||.| &5' ----------GAACTAGCTCATA 3' Rnf113a2 mmu-miR-879 beg:177 end:199 pic:3' CCGAATCTCGATATTCGGAGA 5'& |.||| ||||||| ..||| &5' -GTTTATAGCTATAT-TTTCT 3' Rnf113a2 mmu-miR-881 beg:144 end:162 pic:3' AGATAAGTCTTTTCTGTGTCAA 5'& .||| |.|||||| &5' -------GGAATCAATACAGTT 3' Rnf113a2 mmu-miR-93 beg:30 end:48 pic:3' GATGGACGTGCTTGTCGTGAAAC 5'& |.|| || ||.||||| &5' --ATCT-CAA----AGTACTTT- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf113a2 RAID00582889 mmu-miR-143-3p miRNA MIMAT0000247 Rnf113a2 mRNA 66381 Prediction 0.1828 Rnf113a2 RAID00851186 mmu-miR-496a-3p miRNA MIMAT0003738 Rnf113a2 mRNA 66381 Prediction 0.1828 Rnf113a2 RAID00851529 mmu-miR-338-3p miRNA MIMAT0000582 Rnf113a2 mRNA 66381 Prediction 0.1828 Rnf113a2 RAID01127518 mmu-miR-383-5p miRNA MIMAT0000748 Rnf113a2 mRNA 66381 Prediction 0.1828 Rnf113a2 RAID01219967 mmu-miR-743a-5p miRNA MIMAT0017263 Rnf113a2 mRNA 66381 Prediction 0.1828 Rnf113a2 RAID01392899 mmu-miR-7067-3p miRNA MIMAT0028039 Rnf113a2 mRNA 66381 Prediction 0.1828 Rnf113a2 RAID02338691 mmu-miR-7092-3p miRNA MIMAT0028091 Rnf113a2 mRNA 66381 Prediction 0.1828 Rnf113a2 RAID02831234 mmu-miR-6935-3p miRNA MIMAT0027771 Rnf113a2 mRNA 66381 Prediction 0.1828 Rnf113a2 RAID03098584 mmu-miR-871-5p miRNA MIMAT0004841 Rnf113a2 mRNA 66381 Prediction 0.1828 Rnf113a2 RAID03199698 mmu-miR-495-3p miRNA MIMAT0003456 Rnf113a2 mRNA 66381 Prediction 0.1828 Rnf113a2 RAID03400905 mmu-miR-9-5p miRNA MIMAT0000142 Rnf113a2 mRNA 66381 Prediction 0.1828 Rnf113a2 RAID03648950 mmu-miR-384-3p miRNA MIMAT0001076 Rnf113a2 mRNA 66381 Prediction 0.1828