DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Pcgf3 rno-let-7a 47 67 UUGAUAUGUUGGAUGAUGGAGU :||||: ||: | |:|||| UGCUAUGGAAUGU--UGCCUCU Pcgf3 rno-let-7d 47 68 -UGAUACGUUGGAUGAUGGAGA- :||||| ||: | |:||||| UGCUAUGGAAUGU--UGCCUCUG Pcgf3 rno-let-7f 47 67 UUGAUAUGUUAGAUGAUGGAGU :||||: ||| | |:|||| UGCUAUGGAAUGU--UGCCUCU Pcgf3 rno-miR-1 256 285 AUGUGUGA-----AGA--AAUGUAAGGU- |||||| ||| ||:| ||||| GACACACAGCACCUCUGCUUGCUUUCCAG Pcgf3 rno-miR-103 34 64 AGUAUCGGG--ACAUG-----UUACGACGA |||:|| |||:| ||||:||| ACAUGGCAAAAUGUGCUAUGGAAUGUUGCC Pcgf3 rno-miR-107 35 64 ACUAUCGGG--ACAUG-----UUACGACGA ||:|| |||:| ||||:||| -CAUGGCAAAAUGUGCUAUGGAAUGUUGCC Pcgf3 rno-miR-133a 60 86 -UGUCGACCAACUU--CCCCUGGUU- :| |||| || | ||||||: UGCCUCUGGGUGCCAUGCGGACCAGA Pcgf3 rno-miR-133b 64 86 AUCGACCAACUU--CCCCUGGUU- |||| || | ||||||: --UCUGGGUGCCAUGCGGACCAGA Pcgf3 rno-miR-142-3p 212 239 AGGUA-UUUCAUC-CUUUGUGAU-GU- ||| :||| || ||||||:|| || GCCAGAGAAGAAGUGAAACAUUAGCAC Pcgf3 rno-miR-143 179 197 ACUCGAUGUCA--CGAAGUAGAGU :|||| || ||:|||| -----CGCAGUUUGC-UCGUCUCU Pcgf3 rno-miR-18 251 271 AUAGAC-GUGAUCUACGUGGAAU :|||| ||| |||||| CGUCUGACACACA--GCACCUC- Pcgf3 rno-miR-181a 28 62 -UGAG-UG-GCUGU----CGCAA---CUUACAA- |||| || :|:|| |:| ||||||| CACUCUACAUGGCAAAAUGUGCUAUGGAAUGUUG Pcgf3 rno-miR-183 53 78 GUCACUUAAGAUGG----UCACGGUAU- |||| :|:|| :|||||||: ---GGAAUGUUGCCUCUGGGUGCCAUGC Pcgf3 rno-miR-184 357 379 -UGGGAAUAG-UCAAGAGGCAGGU ||::||||: ||||||:||| UACUUUUAUUAAGUUCUUCGUA-- Pcgf3 rno-miR-193 64 86 -GACCC-UGAAACAUCC-GGUCAA ||||| :| || || |||| UCUGGGUGCCAUGC-GGACCAGA- Pcgf3 rno-miR-196a 132 150 -GGUUGUUGUACUUUGAUGGAU ||||||| || |||||| CCCAACAA---GACACUACCA- Pcgf3 rno-miR-196b 132 150 -GGUUGUUGUCCUUUGAUGGAU ||||||| || |||||| CCCAACAA---GACACUACCA- Pcgf3 rno-miR-203 283 312 GAUCACCAGGAUU-----------UGUAAAGUG ||||:|:| :|:||||| ----AGGUCUUGAGAGUCUUGAGCGCGUUUCAG Pcgf3 rno-miR-206 259 285 GGUGU-GUGAAG--GAAUGUAAGGU- |||| ||| || |||:| ||||| ACACAGCACCUCUGCUUGCUUUCCAG Pcgf3 rno-miR-207 201 227 UUCCCUCCUCUCGGUC-C-UCUUCG- ||| :||||| | |||||: CAGGUCCACAGGCCAGAGAAGAAGUG Pcgf3 rno-miR-208 179 196 UGUUCGAAAAACGAGCAGAAUA || ||||||||||| ---CGCAGUUUGCUCGUCUC-- Pcgf3 rno-miR-20b* 160 186 -GUCUUC-ACGAGUGUGA--CGUCA- ||||:| || ||||| ||||| ACAGAGGAUGAAAACACUUCGCAGUU Pcgf3 rno-miR-210 231 269 -AGUCG-GCG--------------ACAGUGUG-CGUGUC |:||| ||: || ||||| |||| AUUAGCACGUCCCCACACCACGUCUGACACACAGCACC- Pcgf3 rno-miR-298 162 201 CCUUCU------------UGUCGGGA----GGAGACGG- ||:|| :|||::: :||||||: AGAGGAUGAAAACACUUCGCAGUUUGCUCGUCUCUGCUC Pcgf3 rno-miR-300 473 490 CUUCUCUCGAACGGGAACGUAU ||||| |||||| ||| AAAGAG-GCUUGCA---GCAA- Pcgf3 rno-miR-31 37 66 GUCG----AUACGG--UCGUAGAACGGA- :|| |:|||: :| || |||||| UGGCAAAAUGUGCUAUGGAAUGUUGCCUC Pcgf3 rno-miR-320 1 30 AAGCGGGA------GAGU------UGGGUCGAAAA |||| |||| ||||||| ---GCCCAGCCAGACUCAGCCCACACCCAGCA--- Pcgf3 rno-miR-326 196 220 -UGACCUCCUUC---CCGGGUCUCC :|| ||| |||| |||| UGCUCCAGGUCCACAGGCC-AGAGA Pcgf3 rno-miR-330 29 64 AGAGACGU-CCGGG--ACACGA--------AACG- |||| || ||| |||||| |||| ACUCUACAUGGCAAAAUGUGCUAUGGAAUGUUGCC Pcgf3 rno-miR-333 219 248 -UUUUCAU----UGAUCGUGU---GGUG- |:||||: |:||||||: |||| AAGAAGUGAAACAUUAGCACGUCCCCACA Pcgf3 rno-miR-339 196 221 ACUCGAGGACC-----UCCUGUCCCU- ||||| || ||| ||| || --UGCUCCAGGUCCACAGGCCAGAGAA Pcgf3 rno-miR-34a 128 151 UUGUUGGUCGAUUCUGUGACGGU- || ||| | |||||||| ||| CACUCCCAAC-AAGACACUACCAG Pcgf3 rno-miR-351 180 214 -GUC---CGAGUUUCC-CGAGGA------GUCCCU ||| ||||: ||||| |||| GCAGUUUGCUCGUCUCUGCUCCAGGUCCACAGGC- Pcgf3 rno-miR-363-5p 184 216 UUUAACGUAGCA----------CUAGGUG---GGC |||| |||| |:||||| || --UUUGC-UCGUCUCUGCUCCAGGUCCACAGGCCA Pcgf3 rno-miR-370 4 42 -UUGGUCCAA----GGUG-GGGUCGU--------CCG- |:|||| |||| ||||||| ||| CAGCCAGACUCAGCCCACACCCAGCACUCUACAUGGCA Pcgf3 rno-miR-377 53 73 GGUUUUCAACGGAAACACACUA :|| ||||||| || ||| -GGAAUGUUGCCUCUGGGUGC- Pcgf3 rno-miR-378 281 303 UGUGUCCUGGAC-CUCAGUCCUC- |||| |:|| ||||| ||| --CCAGGUCUUGAGAGUCUUGAGC Pcgf3 rno-miR-383 177 202 UCGGUGUCAGUGGA----AGACUAGA :|:||||: || |||| || -UUCGCAGUUUGCUCGUCUCUGCUCC Pcgf3 rno-miR-422b 190 210 -CGGAAGACUGAGGUUCAGGUCA |:| |||| |||||:||||| CGUC-UCUG-CUCCAGGUCCAC- Pcgf3 rno-miR-485 313 347 -CUUAAGUAGUG---CCGG--------UCGGAGA ||:||||| : ||:: |||||| UGAGUUCAUGGAUUAGGUUUCAUGAUAAGCCUCA Pcgf3 rno-miR-540 48 75 -GGU-CCUAGC--UGGAGAC---UGGA |:| ||| :| :|||||| :|| GCUAUGGAAUGUUGCCUCUGGGUGCCA Pcgf3 rno-miR-93 143 180 -GAUGGACGUGCU----UGUC----------GUGAAAC ||||| ||||| |||| ||||| ACUACCAGCACGCGUUUACAGAGGAUGAAAACACUUC- Pcgf3 rno-miR-96 37 76 -UCGUU-----------UUUAC-ACGA----UCACGGUUU :|||| :|||| ||| :|||||| UGGCAAAAUGUGCUAUGGAAUGUUGCCUCUGGGUGCCAU- Pcgf3 rno-let-7d 48 66 uGAUACGUUGGAUGAUGGAGA ||||| || |::|:||||| gCTATGGAA--TGTTGCCTCT Pcgf3 rno-miR-1 260 283 aUGU-GUGAAGA--AAUGUAAGGU ||| ||| ||| ||:| ||||| cACAGCACCTCTGCTTGCTTTCCA Pcgf3 rno-miR-107 41 63 acuauCGGGACAUGUUACGACGa |: || |: ||||:||| aaaatGTGCTATGGAATGTTGCc Pcgf3 rno-miR-133a 61 84 ugucGACCAAC--UUCCCCUGGUu |||| || | | |||||| gcctCTGGGTGCCATGCGGACCAg Pcgf3 rno-miR-133b 62 84 aucGACCAAC--UUCCCCUGGUu |||| || | | |||||| cctCTGGGTGCCATGCGGACCAg Pcgf3 rno-miR-143 174 196 acucgauGUC--ACGAAGUAGAGu ||| ||| ||:|||| cacttcgCAGTTTGC-TCGTCTCt Pcgf3 rno-miR-18 251 271 auAGAC-GUGAUCUACGUGGAau |||| ||| | | |||||| cgTCTGACAC-ACA-GCACCTct Pcgf3 rno-miR-181a 29 60 UGAG-UG-GCUGU----CGC---AACUUACAA |||| || :|:|| |:| | ||||||| ACTCTACATGGCAAAATGTGCTATGGAATGTT Pcgf3 rno-miR-183 50 76 gucaCUUAAGAUGG----UCACGGUAu |||| :|:|| :||||||| tatgGAATGTTGCCTCTGGGTGCCATg Pcgf3 rno-miR-184 358 380 UGGGAAUAG-UCAAGAGGCAggu ||::||||: ||||||:||| ACTTTTATTAAGTTCTTCGTaag Pcgf3 rno-miR-193 65 86 GACCC-UGAAACAUCCGGUCaa ||||| :| || :| |||| CTGGGTGCCATGCGGACCAGat Pcgf3 rno-miR-196a 132 150 GGUUGUUGUACUUUGAUGGau || ||||| || |||||| CC--CAACAAGACACTACCag Pcgf3 rno-miR-196b 132 150 GGUUGUUGUCCUUUGAUGGau || ||||| || |||||| CC--CAACAAGACACTACCag Pcgf3 rno-miR-203 287 311 GAUCAC-CAGGAUU--UGUAAAGUg || | | |||:|:| :|:||||| CTTGAGAGTCTTGAGCGCGTTTCAg Pcgf3 rno-miR-207 197 222 uucccUCC---UCUCGGUCCUCUUCg ||| | || | |||||| gctccAGGTCCACAGGCCAGAGAAGa Pcgf3 rno-miR-208 176 197 uguuCGAAAAACGAGCAGAaua || ||||||||||| cttcGCAGTTTGCTCGTCTctg Pcgf3 rno-miR-20b* 161 184 GUCUUC-ACGAGUGUGA--CGUCA ||||:| || ||||| ||||| CAGAGGATGAAAACACTTCGCAGT Pcgf3 rno-miR-210 245 269 aGUCG-GC-GACAGUGUG-CGUGuc || | || ||| ||||| |||| aCACCACGTCTGACACACAGCACct Pcgf3 rno-miR-214 59 80 gACGGACAGACACGG-ACGACa ||||| | ||||| ||| | tTGCCTCTGGGTGCCATGCGGa Pcgf3 rno-miR-25 208 231 aGUCUGG-CUC-UGUUCACGUUac |||:|| ||| | ||||| || aCAGGCCAGAGAAGAAGTGAAAca Pcgf3 rno-miR-298 255 274 cCUUCUUGUCGGGAGGAGACGg || |||| | ||||||| tGACACACAG--CACCTCTGCt Pcgf3 rno-miR-298 178 199 ccuucuuguCGGGAGGAGACGg ||:| :|||||| tcgcagtttGCTCGTCTCTGCt Pcgf3 rno-miR-300 471 487 cuUCUCUCGAACGGGAACGUau | |||| | |||||| ccAAAGAG---G--CTTGCAgc Pcgf3 rno-miR-31 46 64 guCGAUACGGUCGUAGAACGGA |||||| | || |||||| gtGCTATG---GAATGTTGCCT Pcgf3 rno-miR-320 12 32 aAG-CGGGAGAGUUGGGUCGaaaa || |||| | ||||||| cTCAGCCCAC---ACCCAGCactc Pcgf3 rno-miR-326 197 219 uGACCUCC---U-UCCCGGGUCUCc || ||| | ||| |||||| gCTCCAGGTCCACAGG--CCAGAGa Pcgf3 rno-miR-333 220 251 UUUUCA--UUG--AUC--------GUGUGGUG |:|||| ||| ||| |||||||| AGAAGTGAAACATTAGCACGTCCCCACACCAC Pcgf3 rno-miR-339 194 214 acuCGAGGACCUCCUGUCCcu ||||| || ||||| tctGCTCCAGGTCCACAGGcc Pcgf3 rno-miR-351 194 214 gucCGAGUUUCCCGAGGAGUCCcu |||| | || ||| |||| tctGCTCCA--GG-TCCACAGGcc Pcgf3 rno-miR-363-5p 192 212 uuuaACGUAGCACUAGGUGggc ||| || |:||||| tctcTGC-TCCAGGTCCACagg Pcgf3 rno-miR-370 5 32 UUGGUCCAA----GGUG-GGGUCGUccg |:|||| | |||| ||||||| AGCCAGACTCAGCCCACACCCAGCActc Pcgf3 rno-miR-377 52 73 gguUUUCAACGGAAACACACua || ||||||| || ||| tggAATGTTGCCTCTGGGTGcc Pcgf3 rno-miR-378 279 301 uguGUCCUGGAC-CUCAGUCCUC |||| |:|| ||||| ||| ttcCAGGTCTTGAGAGTCTTGAG Pcgf3 rno-miR-383 176 201 ucgGUGUCA---GUGGA-AGACUAGa |:|||| | | | |||| || cttCGCAGTTTGCTCGTCTCTGCTCc Pcgf3 rno-miR-422b 191 210 CGGAAGACUGAGGUUCAGGUca |:| |||| |||||:||||| GTC-TCTG-CTCCAGGTCCAca Pcgf3 rno-miR-485 322 346 CUUAA---GUAGUGCCGGUCGGAGa |:||| : |||:| : |||||| GGATTAGGTTTCATGATAAGCCTCa Pcgf3 rno-miR-540 72 95 GGU---CCUAG-CUGGAGACUgga ||| ||| | ||::||||| CCATGCGGACCAGATTTCTGAata Pcgf3 rno-miR-93 144 187 GAUGGACGUGC-----------------UUGU----CGUGAAAC ||||| ||||| |||| ||| |||| CTACCAGCACGCGTTTACAGAGGATGAAAACACTTCGCAGTTTG Pcgf3 rno-miR-96 38 76 uCGUUUUUACACGAU-----------------CACGGUuu || ||||||||||| |||||| gGC-AAAATGTGCTATGGAATGTTGCCTCTGGGTGCCAtg Pcgf3 rno-miR-183 69 76 GUCA----------------CUUAAGAUGG----UCACGGUAU |||| :|:|| :|||||||: ACAUGGCAAAAUGUGCUAUGGAAUGUUGCCUCUGGGUGCCAUGC Pcgf3 rno-miR-298 267 274 CCUUCU-----------------------UGUCGGGAGGAGACGG ||||| |||||||: UUAGCACGUCCCCACACCACGUCUGACACACAGCA--CCUCUGCUU Pcgf3 rno-miR-333 244 251 -----------UUUUCAU----UGAUC--------GUGUGGUG |:||||: |:||| |||||||| CAGGCCAGAGAAGAAGUGAAACAUUAGCACGUCCCCACACCACG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pcgf3 RAID00152219 rno-miR-881-5p miRNA MIMAT0017293 Pcgf3 mRNA 305624 Prediction 0.1828 Pcgf3 RAID00320498 rno-miR-743a-5p miRNA MIMAT0017315 Pcgf3 mRNA 305624 Prediction 0.1828 Pcgf3 RAID01184289 rno-miR-449c-3p miRNA MIMAT0017804 Pcgf3 mRNA 305624 Prediction 0.1828 Pcgf3 RAID01745675 rno-miR-871-5p miRNA MIMAT0005281 Pcgf3 mRNA 305624 Prediction 0.1828 Pcgf3 RAID03971641 rno-miR-879-5p miRNA MIMAT0005287 Pcgf3 mRNA 305624 Prediction 0.1828