DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Rnf115; Zfp364 rno-let-7a 195 212 UUGAUAUGUUGGAUGAUGGAGU |||||| |:|||| -----GACAACCAAAUGCCUCU Rnf115; Zfp364 rno-let-7b 7 34 -UUGGUGUG---UUGGA--UGAUGGAGU :||||||| |||| :||:||| AGACCACACCCGAACCAGGGCUGCCUG- Rnf115; Zfp364 rno-let-7c 7 34 -UUGGUAUG---UUGGA--UGAUGGAGU :|||| || |||| :||:||| AGACCACACCCGAACCAGGGCUGCCUG- Rnf115; Zfp364 rno-let-7d 193 213 UGAUAC-GUUGGAUGAUGGAGA- || ||||| |:||||| ---UUGACAACCAAAUGCCUCUU Rnf115; Zfp364 rno-let-7e 337 357 -UGAUAUGUUGGAGGAUGGAGU :|| ||| |||||| ||| GGCUCUACCUCCUCCU-CCUG- Rnf115; Zfp364 rno-let-7f 251 279 -UUGAUAU-GUUAGAUGA---UGGAGU- ||:|||: ||:|:|:|| :||| | UAAUUAUGUCAGUUUGCUCCUGCCUGAG Rnf115; Zfp364 rno-let-7i 325 349 UGUCGUGU----UUGAUGAUGGAGU :||:| ::|| ||||||| CUAGUAAUGGAUGGCU-CUACCUCC Rnf115; Zfp364 rno-miR-106b 543 567 UAGACGUGACAGU----CGUGAAAU |||||||||| | :|||| -CCUGCACUGUCCACGUGGGCUUUC Rnf115; Zfp364 rno-miR-107 33 59 -ACUAUCGGGACAU--GUUACGACGA || |||:||||| || ||||: GUGUUAGUCCUGUUGUCAUAGCUGUA Rnf115; Zfp364 rno-miR-127 166 192 -UCGGU-UCGA--GUCUGCCUAGGCU ||::| :||| ||||:||| :|| AAGUUAGGGCUUACAGAUGGAAUCGU Rnf115; Zfp364 rno-miR-128a 526 554 -UUUUCUCUG----GCCAA--GUGACACU :||:|||| ||| |||||| GGAAGGAGAAACGACGGCCUGCACUGUC- Rnf115; Zfp364 rno-miR-128b 526 554 -CUUUCUCUG----GCCAA--GUGACACU |||:|||| ||| |||||| GGAAGGAGAAACGACGGCCUGCACUGUC- Rnf115; Zfp364 rno-miR-132 16 49 -GC-UGGUACCGAC-------AUCU-GACAAU- || |||| ||||| ||| |||||: CCGAACCAGGGCUGCCUGUGUUAGUCCUGUUGU Rnf115; Zfp364 rno-miR-134 406 426 -GGGAGACCAGUUGGUCAGUGU- ||||| ||| || ||||:| GCCCUCAGGU---CCUGUCAUAU Rnf115; Zfp364 rno-miR-146 960 981 UUGGGUACCUUAAGUCAAGAGU :||::| :||||||||| UGCCUGUUCUGUUCAGUUCUA- Rnf115; Zfp364 rno-miR-150 684 707 GUGACCA---UGUUCCCAACCCUCU- ||| |||: ||||||| --GUGGAAAGACAGAUG-UGGGAGAC Rnf115; Zfp364 rno-miR-17 538 570 -UGAUGGACGUGACA------UUCGU--GAAAC || :|||||||||| ::|| ||| GACGGCCUGCACUGUCCACGUGGGCUUUCUUA- Rnf115; Zfp364 rno-miR-181b 122 149 -GGGUGGCUGU----CGUUACUUACAA ||||: |||||||:||| ACCCAUAAUAUUAAUGCAAUGAGUGUA Rnf115; Zfp364 rno-miR-184 345 367 UGGGAAUAGUCAAGAGGCAGGU :||| || ||||:|||| CUCCUCCUCCUGUCUCUGUCCU Rnf115; Zfp364 rno-miR-196b 15 35 -GGUUGUUGUCCUUUGAUGGAU- ||:| |||| :||:|||: CCCGAAC-CAGG--GCUGCCUGU Rnf115; Zfp364 rno-miR-205 507 534 -GUCU------GAGGCCACCUUACUUCCU- |||| :||| |||| |||||| UCAGAGAGCAAUUCCAGUGG---GAAGGAG Rnf115; Zfp364 rno-miR-207 509 532 UUCCCUCCUCUCG-----GUC-CUCUUCG |||||| ||| |:|||| ------AGAGAGCAAUUCCAGUGGGAAGG Rnf115; Zfp364 rno-miR-214 26 50 -GACGGACAGA--CACGGACGACA- |||||||| | || ||||:||| GCUGCCUGUGUUAGU-CCUGUUGUC Rnf115; Zfp364 rno-miR-222 663 689 CUCUGGGUCAUCG---GUCUACAUCGA |||:: || ||| :||||||:| UAGAUUGAGCAGCAUAUAGAUGUGGA- Rnf115; Zfp364 rno-miR-26a 960 994 -CGGAUAGGACCUA-----------AUGAACUU- ||||:|:||| ||||||:| UGCCUGUUCUGUUCAGUUCUAGCUGUACUUGGAA Rnf115; Zfp364 rno-miR-26b 960 994 UUGGAUAGGACUUA-----------AUGAACUU- :|||:|:||| ||||||:| UGCCUGUUCUGUUCAGUUCUAGCUGUACUUGGAA Rnf115; Zfp364 rno-miR-27a 697 721 -CGCCU--UGAAUCGGUGACACUU |:||: |||| |:|||| || UGUGGGAGACUUUACUACUGCGAU Rnf115; Zfp364 rno-miR-290 1014 1039 UUUUUCACGGGG---GU---AUCAAACUC- ||||| || |||||||:| -----AUGCCCAAAACAACUUAGUUUGGGA Rnf115; Zfp364 rno-miR-298 332 360 CCUUCUUGUCG-------GGAGGA-GACGG- |:|::|| |||||| |||:| ---UGGAUGGCUCUACCUCCUCCUCCUGUCU Rnf115; Zfp364 rno-miR-299 1030 1050 UACAUACACCCUG-CCAUUUGGU || ||||| |||||||| -AGUU--UGGGAAAGGUAAACCU Rnf115; Zfp364 rno-miR-31 253 277 GUCGAUACGGUCGUA-GA--ACGGA- :||||:|||: || ||||| --AUUAUGUCAGUUUGCUCCUGCCUG Rnf115; Zfp364 rno-miR-322 296 324 ACAA---CGUC----GCGA-AGUACAAA || |:|| :||| ||||||| AGUCUAGGUAGGUUCUGCUGUCAUGUUG Rnf115; Zfp364 rno-miR-324-5p 602 634 UGUGGU----UACGGGAUC----CCCUA-CGC ||||| |||:|:||| ||| |: CCACCAUGGCAUGUCUUAGUUUUGGGUUGGUA Rnf115; Zfp364 rno-miR-328 525 546 UGCCUUCCCGUCU---CUCCCGGUC |||||| ||| || |||| -GGGAAGG--AGAAACGACGGCCU- Rnf115; Zfp364 rno-miR-343 171 188 AGACCCGUGUGCCUCCCUCU |||| || || ||| --AGGGCUUACAGAUGGAA- Rnf115; Zfp364 rno-miR-34a 512 557 -UUGUU--GGUCGA--UUC---------------UGUGAC GGU |:||| ||||: ||| :||||| ||| GAGCAAUUCCAGUGGGAAGGAGAAACGACGGCCUGCACUGUCCAC Rnf115; Zfp364 rno-miR-34b 257 278 GUUAGUCGAUUAAUGU-GACGGAU- :||||: ||:| ||||||: -UGUCAGU---UUGCUCCUGCCUGA Rnf115; Zfp364 rno-miR-34c 257 277 CGUUAGUCGAUUGAUGUGACGGA- :||||:| :|| | |||||| --UGUCAGUUUGCU-C-CUGCCUG Rnf115; Zfp364 rno-miR-351 396 416 -GUCCGAGUUUCCCGAGGAGUCCCU || || ||:| || ||||||| ACAAGC-CAGA--GC-CCUCAGGU- Rnf115; Zfp364 rno-miR-376b 647 661 UCACCUACAAGGAGAUACUA |||:||||:||| ------GGUUUCUCUGUGAC Rnf115; Zfp364 rno-miR-377 199 232 -GGUUUUCAACGGA-AACA-----------CACUA- ||||| ||||| |||| ||||| ACCAAA---UGCCUCUUGUUCCUGAAUUGAGUGAUA Rnf115; Zfp364 rno-miR-383 398 418 -UCGGUGUCAGUGGAAGACUAGA ||||| || | ||| | |:|| AAGCCAGAG-C-CCU-CAGGUCC Rnf115; Zfp364 rno-miR-409-3p 646 679 CCCCAAG--------------UGGCUCGUUGUAA ||||: |::|||||:||| -UGGUUUCUCUGUGACAUUAGAUUGAGCAGCAUA Rnf115; Zfp364 rno-miR-422b 560 582 -CGGAAGACUGAGGUUCAGGUCA ||:|||| |:|:: |||:||| GGCUUUCUUAUUUU-AGUUCAGG Rnf115; Zfp364 rno-miR-449 519 557 UGGUCGA------------UUGUU--AUGUGAC-GGU- ||||: :||:: |:||||| ||| UCCAGUGGGAAGGAGAAACGACGGCCUGCACUGUCCAC Rnf115; Zfp364 rno-miR-489 25 53 -CGACGGUAUAUAC-----ACUACAGUAA |||||| |:|:| || |||||| GGCUGCC-UGUGUUAGUCCUGUUGUCAUA Rnf115; Zfp364 rno-miR-493 540 568 GACCG--UGUGU------CAUCUGGAAGU ||| :||| ||:|:|:||| -CGGCCUGCACUGUCCACGUGGGCUUUCU Rnf115; Zfp364 rno-miR-497 16 49 AUGUUUGGUGUC-----ACACG------ACGAC- |:||||| :| ||||: ||:|| -CCGAACCAGGGCUGCCUGUGUUAGUCCUGUUGU Rnf115; Zfp364 rno-miR-9 382 408 AGUAUGUCGA-----UCUA-UUGGUUUCU ||||| ||| |:|||:|| ---CACAGCAAAUACAGACAAGCCAGAGC Rnf115; Zfp364 rno-let-7a 188 211 uugAUA--UGUUGGAUGAUGGAGu ||| |||||| | |:|||| tcgTATTGACAACCAAATGCCTCt Rnf115; Zfp364 rno-let-7b 8 34 uUGGUGUG---UUGG--AUGAUGGAgu ||||||| |||| :||:||| gACCACACCCGAACCAGGGCTGCCTgt Rnf115; Zfp364 rno-let-7c 8 34 uUGGUAUG---UUGG--AUGAUGGAgu |||| || |||| :||:||| gACCACACCCGAACCAGGGCTGCCTgt Rnf115; Zfp364 rno-let-7d 328 348 ugaUACGU-UGGAUGAUGGAGa ||| | : || ||||||| gtaATGGATGGCT-CTACCTCc Rnf115; Zfp364 rno-let-7d 190 211 ugauAC-GUUGGAUGAUGGAGA || ||||| | |:||||| gtatTGACAACCAAATGCCTCT Rnf115; Zfp364 rno-let-7f 252 277 UUGAUAU-GUUA---GAUGAUGGAgu ||:|||: ||:| || ||:||| AATTATGTCAGTTTGCTCCTGCCTga Rnf115; Zfp364 rno-miR-106b 533 553 uagacgUGACAGUCGUGAAAu || | | ||||| | gaaacgACGGCCTGCACTGTc Rnf115; Zfp364 rno-miR-107 34 58 ACUAUCGGGAC-AUGUUA-CGACga || |||:|||| |:: || |||| TGTTAGTCCTGTTGTCATAGCTGta Rnf115; Zfp364 rno-miR-127 167 191 UCGGU-UCGA--GUCUGCCUAGGCu ||::| :||| ||||:||| :|| AGTTAGGGCTTACAGATGGAATCGt Rnf115; Zfp364 rno-miR-128a 529 554 UUUUCUCUG--GCC--AAGUGACAcu |::||| || ||| | |||||| AGGAGAAACGACGGCCTGCACTGTcc Rnf115; Zfp364 rno-miR-128b 527 554 CUUUCUC--UG--GCC--AAGUGACAcu |||:||| || ||| | |||||| GAAGGAGAAACGACGGCCTGCACTGTcc Rnf115; Zfp364 rno-miR-132 17 36 GC-UGGUACCGACAUCUGACAau || |||| |||| | |||| CGAACCAGGGCT---GCCTGTgt Rnf115; Zfp364 rno-miR-134 407 424 GGGAGACCAGUUGGUCAGUGU ||||| ||| || ||||:| CCCTCAGGT---CCTGTCATA Rnf115; Zfp364 rno-miR-136 1092 1114 agguaGUAGUUUUGUUUACCUCa || :::||:|||||||| gtttaCAATGGAATAAATGGAGa Rnf115; Zfp364 rno-miR-139 537 555 uCUG-UGCACGUGACAucu ||| :| |||||||| cGACGGCCTGCACTGTcca Rnf115; Zfp364 rno-miR-146 960 981 uuGGGUACCUUAAGUCAAGAgu ||::| :||||||||| tgCCTGTTCTGTTCAGTTCTag Rnf115; Zfp364 rno-miR-151 273 303 GGAGU--UCCUCG--GAG-----UCAGAUCa ||| | || | | :|| ||||||| CCTGAGTAGAATCAATTCCGTAAAGTCTAGg Rnf115; Zfp364 rno-miR-17 539 566 UGAUGGACGUGACA----UUCGUGAAAc || :|||||||||| : | :|||| ACGGCCTGCACTGTCCACGTGGGCTTTc Rnf115; Zfp364 rno-miR-181b 123 148 GGGUG----GCUGUCGUUACUUACAa ||||: : | |||||||:||| CCCATAATATTAATGCAATGAGTGTa Rnf115; Zfp364 rno-miR-196b 16 33 GGUUGUUGUCCUUUGAUGGAu ||:| | |||| :||:||| CCGA-ACCAGG--GCTGCCTg Rnf115; Zfp364 rno-miR-205 515 532 GUCUGAGGCCACCUUACUUCCU || |:||| |||| |||||| CA-ATTCCAGTGG---GAAGGA Rnf115; Zfp364 rno-miR-207 508 537 uUCCCUCCUCUCGG-------UCCUCUUcg || ||| | || ||||||| cAGAGAGCAATTCCAGTGGGAAGGAGAAac Rnf115; Zfp364 rno-miR-214 27 48 GACGGACAGACAC-GGACGACA |||||||| | | ||||:||| CTGCCTGTGTTAGTCCTGTTGT Rnf115; Zfp364 rno-miR-222 663 689 cUCUGGGUCAUCG---GUCUACAUCga |||:: || ||| :||||||:| tAGATTGAGCAGCATATAGATGTGGaa Rnf115; Zfp364 rno-miR-26a 961 992 CGGAUAGGAC----------CUA-AUGAACUU ||||:|:||| | | ||||||:| GCCTGTTCTGTTCAGTTCTAGCTGTACTTGGA Rnf115; Zfp364 rno-miR-27a 698 720 CGCC--UUGAAUCGGUGACACUu |:|| :|||| |:|||| || GTGGGAGACTTTACTACTGCGAt Rnf115; Zfp364 rno-miR-290 1009 1037 uuuuucACGGG----G--GUAUCAAACUC ||||| | | |||||||:| taatcaTGCCCAAAACAACTTAGTTTGGG Rnf115; Zfp364 rno-miR-298 333 358 CCUUCU--UGUCG-GGAGGA-GACGG ||| |: :| | |||||| |||:| GGATGGCTCTACCTCCTCCTCCTGTC Rnf115; Zfp364 rno-miR-299 1029 1049 uaCAUACACCCUGCCAUUUGGu || || || | |||||||| taGTTTG-GGAAAGGTAAACCt Rnf115; Zfp364 rno-miR-31 251 275 gUCGAUACGGUCG---UAGAACGGA | :||||:|||: || ||||| tAATTATGTCAGTTTGCTCCTGCCT Rnf115; Zfp364 rno-miR-328 524 546 ugCCUUCC-CGUCUCUCCCGGuc |||||| | | || |||| tgGGAAGGAGAAACGACGGCCtg Rnf115; Zfp364 rno-miR-343 169 188 AGACCCGUGUGCCUCCCUcu |: |||| :|| || ||| TTAGGGCTTACAGATGGAat Rnf115; Zfp364 rno-miR-34a 535 554 UUGUUGGUCGAUUCUGUGACGGu |||:|| : || :|||||:| AACGACGGCCT---GCACTGTCc Rnf115; Zfp364 rno-miR-34b 256 276 guuAGUCGAUUAAUGUGACGGAu ||||:| : | |||||| atgTCAGTTTGCTC--CTGCCTg Rnf115; Zfp364 rno-miR-34c 255 275 cguuAGUCGAUUGAUGUGACGGA ||||:| :|| | |||||| tatgTCAGTTTGCT-C-CTGCCT Rnf115; Zfp364 rno-miR-351 397 416 GUCCGAGUUUCCCGAGGAGUCCcu || || ||:| || ||||||| CAAGC-CAGA--GC-CCTCAGGtc Rnf115; Zfp364 rno-miR-376b 641 660 ucaccuaCAAGGAGAUACUa |||:||||:||| gattttgGTTTCTCTGTGAc Rnf115; Zfp364 rno-miR-377 200 230 GGUUUUC----AAC--GGA---AACACACUA ||||| | ||| ||| ||| ||||| CCAAATGCCTCTTGTTCCTGAATTGAGTGAT Rnf115; Zfp364 rno-miR-382 1009 1030 cUUAG-GUGGUGCUUGUUGAAg |||| ::|| |||||||| tAATCATGCCCAAAACAACTTa Rnf115; Zfp364 rno-miR-383 399 417 UCGGUGUCAGUGGAAGACUAGa ||||| || || || |:|| AGCCAGAG---CCCTCAGGTCc Rnf115; Zfp364 rno-miR-409-3p 659 678 ccccaagUGGCUCGUUGUAa |::|||||:||| acattagATTGAGCAGCATa Rnf115; Zfp364 rno-miR-422b 561 581 CGGAAGACUGAGGUUCAGGUCa ||:|||| |:|:: |||:||| GCTTTCTTATTTT-AGTTCAGg Rnf115; Zfp364 rno-miR-449 528 554 uggucgaUUGUU-----AUGUGACGGu |||:| |:|||||:| aaggagaAACGACGGCCTGCACTGTCc Rnf115; Zfp364 rno-miR-489 26 52 CGACGG-UAUAUAC---ACUACAGUAa |||||| :|:| | || |||||| GCTGCCTGTGTTAGTCCTGTTGTCATa Rnf115; Zfp364 rno-miR-493 549 567 GACCGUGUGUCAUCUGGAAGu ||| | ||| ||:|:|:||| CTGTC-CAC-GTGGGCTTTCt Rnf115; Zfp364 rno-miR-497 4 32 AUGUUUGGUGU---C----ACACGACGac || |:|||||| | | ||||| TAAAGACCACACCCGAACCAGGGCTGCct Rnf115; Zfp364 rno-miR-9 388 407 agUAUGUCGAUCUAUUGGUUUCu |||||| | | |:|||:|| aaATACAG--ACA-AGCCAGAGc Rnf115; Zfp364 rno-miR-98 327 348 UUGUUA--UGUUGAAUGAUGGAGu |::||| |:::|| ||||||| AGTAATGGATGGCT--CTACCTCc Rnf115; Zfp364 rno-let-7d 341 348 ------UGA---UACGUUGGAU-------------GAUGGAGA :|| |||: :||| ||||||| GGUUCUGCUGUCAUGUUGUCUAGUAAUGGAUGGCUCUACCUCC Rnf115; Zfp364 rno-let-7e 341 348 ------UGAUA------------------UGUUGGAGGAUGGAGU :||:| | :| :||||||| GGUUCUGCUGUCAUGUUGUCUAGUAAUGGAUGGC--UCUACCUCC Rnf115; Zfp364 rno-let-7i 341 348 U-------------------GUCGUGU----UUGAUGAUGGAGU :||:| ::|| ||||||| GGUUCUGCUGUCAUGUUGUCUAGUAAUGGAUGGCU-CUACCUCC Rnf115; Zfp364 rno-miR-136 1107 1114 -----------AGGUA-GUA--------GUUUUGUUUACCUCA ||::| ||| : ||:|||||||| CAUACGCAUACUCUGUACAUGUUUACAAUGGAAUAAAUGGAGA Rnf115; Zfp364 rno-miR-151 296 303 ------------GGAGUUCCUCGGAG----------UCAGAUCA ||| :|| || || ||||||| AGUUUGCUCCUGCCU-GAGUAGAAUCAAUUCCGUAAAGUCUAGG Rnf115; Zfp364 rno-miR-299 1042 1049 UACAUAC--------------------ACCCUG-CCAUUUGGU ||||| |||||||| UGUAAUCAUGCCCAAAACAACUUAGUUUGGGAAAGGUAAACCU Rnf115; Zfp364 rno-miR-322 316 323 ACAA------------------CGUC----GCGA-AGUACAAA |:|| :||| ||||||| GAAUCAAUUCCGUAAAGUCUAGGUAGGUUCUGCUGUCAUGUUG Rnf115; Zfp364 rno-miR-382 1023 1030 ---CUUAGG--------------UGGUGC-----UUGUUGAAG ||||| |:||:| |||||||| UUGGAAUCAAUCUGAUCAAUGUAAUCAUGCCCAAAACAACUUA Rnf115; Zfp364 rno-miR-98 341 348 ------------------------UUGUUAUGUUGAAUGAUGGAGU || : | :|| ||||||| GGUUCUGCUGUCAUGUUGUCUAGUAAUGG-AUGGCU--CUACCUCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf115 RAID00926742 rno-let-7a-2-3p miRNA MIMAT0017086 Rnf115 mRNA 362002 Prediction 0.1828 Rnf115 RAID02556273 rno-let-7g-3p miRNA MIMAT0035720 Rnf115 mRNA 362002 Prediction 0.1828