DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004646 rno-miR-338* 309626 Ring1 gugaguCGUGGUC--CUAUAACAa | ||:|| ||||||| uauauuGAACUAGUCUAUAUUGUa 2 17 139 162 [rn4:20:4971992-4972015:+] 0.6973 147 7 -10.73 -1.1239 MIMAT0004646 rno-miR-338* 309626 Ring1 gugagUCGUGGUCCUAUAACaa ||:|:| |||||| uacaaAGUAUC--UAUAUUGaa 3 18 128 147 [rn4:20:4971981-4972000:+] 0.6973 126 0 -12.26 -0.1769 MIMAT0000585 rno-miR-340-3p 309626 Ring1 ccgauauuucauugacUCUGCCu |||||| gaggacagacaagggcAGACGGc 2 8 100 122 [rn4:20:4971953-4971975:+] 0.6973 120 6 -13.33 -0.1242 MIMAT0000614 rno-miR-151* 309626 Ring1 ggaguuccucggaGUCAGAUc :|||||| aucuauauugaacUAGUCUAu 2 9 136 156 [rn4:20:4971989-4972009:+] 0.6973 124 6 -9.26 -0.1051 MIMAT0005445 rno-miR-29b-1* 309626 Ring1 uuUAGAUUUGGU-GGUAU-ACUUu || ||| :| |:||| |||| uuAUACAAAGUAUCUAUAUUGAAc 2 21 125 148 [rn4:20:4971978-4972001:+] 0.6973 123 0 -6.96 -1.1764 MIMAT0004719 rno-miR-30c-1* 309626 Ring1 ccucauUUGUUG--GGAGAGGGUc :|||:| | ||||||| cagccuGACAGCUUCAUCUCCCAa 2 17 55 78 [rn4:20:4971908-4971931:+] 0.6973 151 7 -18.87 -1.0355 MIMAT0005442 rno-miR-30c-2* 309626 Ring1 ucucauUUGUCGGA--AGAGGGUc :|||||:| ||||||| cagccuGACAGCUUCAUCUCCCAa 2 17 55 78 [rn4:20:4971908-4971931:+] 0.6973 159 7 -21.33 -1.0327 MIMAT0000813 rno-miR-34b 309626 Ring1 guuagucgauuaauGUGACGGAu :||||||| ggacccgcgcccacUACUGCCUu 2 10 170 192 [rn4:20:4972023-4972045:+] 0.6973 141 7 -14.09 -0.7808 MIMAT0004738 rno-miR-199a-3p 309626 Ring1 auugguuaCACGUCUGAUGACa | || ||||||| cgggacccGCGCCCACUACUGc 2 15 168 189 [rn4:20:4972021-4972042:+] 0.6973 146 7 -16.29 -0.2236 MIMAT0005317 rno-miR-463 309626 Ring1 gaUGGGUUUAAC-CG--CAGAUAgu |:|:| |||| | |||||| guAUCUAUAUUGAACUAGUCUAUau 3 21 134 158 [rn4:20:4971987-4972011:+] 0.6973 134 0 -14.35 -0.1001 MIMAT0005333 rno-miR-742 309626 Ring1 aaauggguuguaccaCCGAAAg |||||| cagacaagggcagacGGCUUUu 2 8 105 126 [rn4:20:4971958-4971979:+] 0.6973 120 6 -11.38 -0.1013 MIMAT0012832 rno-miR-568 309626 Ring1 cacacauaUGUAAAUAUGUa :| |||||||| ggcagacgGCUUUUAUACAa 2 13 113 132 [rn4:20:4971966-4971985:+] 0.6973 148 7 -6.64 -1.2688 MIMAT0012836 rno-miR-628 309626 Ring1 ggaGAGCAUUUAU-ACA-GUCGUa || || ||| ||| ||||| gaaCUAGUCUAUAUUGUACAGCAc 2 20 145 168 [rn4:20:4971998-4972021:+] 0.6973 126 0 -12.59 -0.6170 MIMAT0012837 rno-miR-632 309626 Ring1 agGCCGUCCU-UUGUCUGUg | ||| || :||||||| gaCAGCAAGAGGACAGACAa 2 18 92 111 [rn4:20:4971945-4971964:+] 0.6973 156 7 -16.01 -0.5398 MIMAT0000596 rno-miR-346 309626 Ring1 ucUCC-GUCCGUGAGUCCGUCUGu ||| ||| || :||||||| agAGGACAG--ACAAGGGCAGACg 2 22 99 120 [rn4:20:4971952-4971973:+] 0.6973 153 7 -29.60 -0.6184 MIMAT0000849 rno-miR-143 309626 Ring1 acUCGAUGUCACGAAGUAGAGu ||| | |||||||||| ucAGCCUGACAGCUUCAUCUCc 2 21 54 75 [rn4:20:4971907-4971928:+] 0.6973 160 7 -19.59 -0.5712 MIMAT0000863 rno-miR-186 309626 Ring1 ucggguuuuccucuuAAGAAAc |||||| aaauuugcuuauuucUUCUUUg 2 8 272 293 [rn4:20:4972125-4972146:+] 0.6973 120 6 -8.04 -0.6065 MIMAT0003176 rno-miR-539 309626 Ring1 ugUGUGGUU---CCUAUUAAAGAGg ||| ||| | | ||||||: caACAACAAAUUUGCUUAUUUCUUc 2 21 265 289 [rn4:20:4972118-4972142:+] 0.6973 135 0 -10.64 -0.1895

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G097851 Ring1 Rattus norvegicus 309626

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Ring1; Rnf1 rno-let-7b 173 194 UUGGUGUGUUGGAUGAUGGAGU ||:|:| |||||:|||: -CCCGCGCCCACUACUGCCUUU Ring1; Rnf1 rno-let-7d 175 195 UGAUACGUUG--GAUGAUGGAGA- ||: |||||:|||:| ----CGCGCCCACUACUGCCUUUU Ring1; Rnf1 rno-let-7i 161 194 -UGUCGUGUU-----------UGAUGAUGGAGU |||||||:: ||||||:|||: UACAGCACGGGACCCGCGCCCACUACUGCCUUU Ring1; Rnf1 rno-miR-10a 19 40 GUGUUUAAGCCUAGAUGUCCCAU- |:|| ||| | |::||||: --AAGAUGGGGA-CCAUGGGGUGU Ring1; Rnf1 rno-miR-125a 3 38 -GUGUCCAAUU----------UCCCAGAGU-CCCU- |||||| :||| | || |||: UCACAGGGACAGCCAGAAGAUGGGGAC-CAUGGGGU Ring1; Rnf1 rno-miR-125b 2 38 -AGUGUUCA------------AUCCCAGAGU-CCCU- |||||:| |:||| | || |||: GUCACAGGGACAGCCAGAAGAUGGGGAC-CAUGGGGU Ring1; Rnf1 rno-miR-128a 23 48 UUUUCUCUGG---CCA--AGUGACACU :|:|||| || || ||||| --UGGGGACCAUGGGGUGUCUCUGUGU Ring1; Rnf1 rno-miR-128b 20 48 -CUUUCUCUGG---CCA--AGUGACACU || :|:|||| || || ||||| AGAUGGGGACCAUGGGGUGUCUCUGUGU Ring1; Rnf1 rno-miR-129 77 105 UCGUUCGGG-------UCUGGCGUUUUUC- |||||| |||| ||||:|:| --AAAGCCCCCCAGCCAGACAGCAAGAGGA Ring1; Rnf1 rno-miR-133a 10 33 -UGUCGACCAACUUCCCCUGGUU ||||| || |||||||| GACAGCCAGAAGAUGGGGACCAU Ring1; Rnf1 rno-miR-133b 12 33 AUCGACCAACUUCCCCUGGUU ||| || |||||||| CAGCCAGAAGAUGGGGACCAU Ring1; Rnf1 rno-miR-143 50 76 ACUCGAUGUCA------CGAAGUAGAGU |||| ||| |||||||||| -CAGCU-CAGCCUGACAGCUUCAUCUCC Ring1; Rnf1 rno-miR-144 132 164 GAUCAUG----UAG------UAGAUAUGACAU- ||||: ||: :||||||:|||| -AAGUAUCUAUAUUGAACUAGUCUAUAUUGUAC Ring1; Rnf1 rno-miR-17 146 170 -UGAU-GGACGUGACAU-UCGUGAAAC |||| :|| :|:|||| ||||| AACUAGUCUAUAUUGUACAGCACG--- Ring1; Rnf1 rno-miR-187 157 180 GCCGACGU--UGUGUUCUG--UGCU :||:| :|||::||| :|| --AUUGUACAGCACGGGACCCGCGC Ring1; Rnf1 rno-miR-196b 162 193 GGUUGUUGUCCUU-----------UGAUGGAU ||:| ||:||| |||:||| ACAGC-ACGGGACCCGCGCCCACUACUGCCUU Ring1; Rnf1 rno-miR-210 148 172 AGUCGGCGACA--GUGUGCGUGUC- :||:| | :||| ||||:| CUAGUCUAUAUUGUACA-GCACGGG Ring1; Rnf1 rno-miR-211 95 116 UCCG-UUUCCUA-CUGUUUCCCUU || |:|||| |||||:|| -AGCAAGAGGACAGACAAGGGC-- Ring1; Rnf1 rno-miR-214 36 56 GACGGACAGACACGGA--CGACA ||:| ||||||:| ||| GUGUC--UCUGUGUCCCAGCUC- Ring1; Rnf1 rno-miR-22 34 70 UGUCA-AGA------------AGUU-GACCGUCGAA- :|| ||| |||: ||| |||||| -GGGUGUCUCUGUGUCCCAGCUCAGCCUGACAGCUUC Ring1; Rnf1 rno-miR-24 197 224 GACAAGG-----ACGACUUGACUCGGU- || || ||| || |||||: AUGGGCCCCCACUGCCC-ACCGAGCCGG Ring1; Rnf1 rno-miR-296 4 43 -UGUCCUA-----------ACUCC-----CCCC-CGGGA |||||: ||:|| |||| |:|: CACAGGGACAGCCAGAAGAUGGGGACCAUGGGGUGUCUC Ring1; Rnf1 rno-miR-298 232 259 -CCUUCUUG--UCGGGAGGAGA--CGG- || |||| :|||| |||| ||| CGGUCGAACAAGGCCC-CCUCCCCGCCC Ring1; Rnf1 rno-miR-320 44 70 AAGCGGGA--GAGUUGGG---UCGAAAA :|:|| ||||:||: ||||| -GUGUCCCAGCUCAGCCUGACAGCUUC- Ring1; Rnf1 rno-miR-324-3p 88 119 -GGUC-GUCGUG---------GACCCCGUCACC |||| ||||| | |||||| GCCAGACAGCAAGAGGACAGACAAGGGCAGA-- Ring1; Rnf1 rno-miR-328 101 125 UGCCU------UCCCGUCUCUCCCGGUC ||| |||||||| |||: -AGGACAGACAAGGGCAGAC--GGCUU- Ring1; Rnf1 rno-miR-329 19 41 -UUUUUCCAAUCGACCCACACAA |:| :|| |||| |||| AAGAUGGGGACCAUGGG-GUGUC Ring1; Rnf1 rno-miR-331 20 39 AAGAUCCUAUCCG-GGU-CCCCG- |||:|| ||| ||||: -----AGAUGGGGACCAUGGGGUG Ring1; Rnf1 rno-miR-341 206 240 -UGAC---UGGCU---------GGCUGGCUAGCU- |||| ||||| |||: ||:|||| CACUGCCCACCGAGCCGGUGACCCGG-CGGUCGAA Ring1; Rnf1 rno-miR-346 98 122 -UCUCC-GUCCGUGAGUCCGUCUGU- ||||| ||| || :|||||||: AAGAGGACAGACAA--GGGCAGACGG Ring1; Rnf1 rno-miR-349 98 117 -UCUCCAAUUCUGUCGUCCCGAC ||||| ||||| ||||| AAGAGGAC-AGACA--AGGGCA- Ring1; Rnf1 rno-miR-369-5p 215 240 -GCUUA--UAUUG---UGCCAGCUAGA |||: :|:|| :||||||| CCGAGCCGGUGACCCGGCGGUCGAA-- Ring1; Rnf1 rno-miR-370 163 204 -UUG-GUCCAAGGUG-GGGU-----CG---------UCCG |:| |:|| ||:| |||| || :||| CAGCACGGGACCCGCGCCCACUACUGCCUUUUCUAUGGGCC Ring1; Rnf1 rno-miR-376c 31 49 GCACUUUAAAGGAGAUACAA || :| :||||:||| -AUGGGGUG-UCUCUGUGUC Ring1; Rnf1 rno-miR-377 28 49 -GGUUUUCAACGGAAACACACUA ||| :| ||:|| ||||| ACCAUGGGGUGUCUCUGUGUC-- Ring1; Rnf1 rno-miR-382 45 71 CUUAGG-------UGGUGCUUGUUGAAG- :||| :|| :|||:|||| -UGUCCCAGCUCAGCCU--GACAGCUUCA Ring1; Rnf1 rno-miR-422b 37 59 -CGGAAGACUGAGGUUCAGGUCA |:| |||| ||| || :||| UGUC-UCUGUGUCCCAGCUCAGC Ring1; Rnf1 rno-miR-449 187 214 -UGGUC--GAUUGUUAU--GUGACGGU :|| ||| :: ||||||| UGCCUUUUCUAUGGGCCCCCACUGCCC Ring1; Rnf1 rno-miR-483 18 40 UGUUCUGCCCUCCCCUCCUCACU ||||:|||: ||:||| -GAAGAUGGGGACCAUGGGGUGU Ring1; Rnf1 rno-miR-99b 164 203 GCGUUCCA---GC-C--------------AAGAUGCCCAC ||| || || | |||||:||| AGCACGGGACCCGCGCCCACUACUGCCUUUUCUAUGGGC- Ring1; Rnf1 rno-let-7b 172 193 UUGGUGUGUUGGAUGAUGGAgu | ||:|:| |||||:||| ACCCGCGCCCACTACTGCCTtt Ring1; Rnf1 rno-let-7d 171 193 ugauaCGUUG--GAUGAUGGAGA ||: | |||||:|||:| gacccGCGCCCACTACTGCCTTT Ring1; Rnf1 rno-let-7i 173 193 uGUCGUGUUUGAUGAUGGAgu | ||:| ||||||:||| cCCGCGCCCACTACTGCCTtt Ring1; Rnf1 rno-miR-10a 16 38 GUGUUUAAGCCUAGAUGUCCCAu || ||: | ||: | |::|||| CAGAAGATGGGGACCATGGGGTg Ring1; Rnf1 rno-miR-125a 1 11 guguccaauuuccCAGAGUCCCU ||| |||||| ------------cGTCACAGGGA Ring1; Rnf1 rno-miR-125b 1 11 aguguucaauccCAGAGUCCCU ||| |||||| -----------cGTCACAGGGA Ring1; Rnf1 rno-miR-128a 19 47 UUUU--CUCUGG----CCA-AGUGACACu ||:| |:|||| ||| || ||||| AAGATGGGGACCATGGGGTGTCTCTGTGt Ring1; Rnf1 rno-miR-128b 21 47 CUUUCUCUGG----CCA-AGUGACACu || :|:|||| ||| || ||||| GATGGGGACCATGGGGTGTCTCTGTGt Ring1; Rnf1 rno-miR-129 83 103 ucGUUCGGGUCUGGCGUUUUUC | || |||||| ||||:|:| ccCCAG-CCAGACAGCAAGAGG Ring1; Rnf1 rno-miR-133a 11 32 UGUCGACCAACUUCCCCUGGUu ||||| | || |||||||| ACAGCCAGAAGATGGGGACCAt Ring1; Rnf1 rno-miR-143 54 75 ACUC-GA-UGUCACGAAGUAGAGu | || || ||| |||||||||| TCAGCCTGACA--GCTTCATCTCc Ring1; Rnf1 rno-miR-144 142 162 gAUCAUGUAGUAGAUAUGACAU | | || | :||||||:|||| aTTGAAC-TAGTCTATATTGTA Ring1; Rnf1 rno-miR-17 147 172 UGAU-GGACGUGACAU-UCGUGaaac |||| :|| :|:|||| ||||| ACTAGTCTATATTGTACAGCACggga Ring1; Rnf1 rno-miR-210 162 183 aGUCG-GCGACAGUGUGCGUGUc |||| || | | |:||| || aCAGCACG-GGACCCGCGCCCAc Ring1; Rnf1 rno-miR-211 94 117 ucCGUU-UCCU-ACUGUUUCCCUu |||| |||| |||||:|| | caGCAAGAGGACAGACAAGGGCAg Ring1; Rnf1 rno-miR-214 36 56 gACGGACAGACACGGACGAca ||:|| | ||| || ||| gTGTCTCTGTGTCCCAGCTca Ring1; Rnf1 rno-miR-22 49 68 uGUCAAGAAGUUGACCGUCGAA ||| || | ||| |||||| cCAGCTCAGC--CTGACAGCTT Ring1; Rnf1 rno-miR-24 199 222 gacaaGGACGAC--UUGACUCGGu || ||| || ||||| gggccCCCACTGCCCACCGAGCCg Ring1; Rnf1 rno-miR-296 5 31 UGU-CCUAAC-----UCCCCCCCGGGa ||| ||| | || |||| || ACAGGGACAGCCAGAAGATGGGGACCa Ring1; Rnf1 rno-miR-298 233 257 CCUUCUUGU--CGGGAGGA--GACGG || ||||| |||| ||| | ||| GGTCGAACAAGGCCC-CCTCCCCGCC Ring1; Rnf1 rno-miR-320 46 70 aAGCGGGAGAGUUGG---GUCGAAaa || || ||||:|| |||||| gTC-CCAGCTCAGCCTGACAGCTTca Ring1; Rnf1 rno-miR-324-3p 89 120 GGUC-GUCG------UG---GACCCCGUCacc |||| |||| || | |||||| CCAGACAGCAAGAGGACAGACAAGGGCAGacg Ring1; Rnf1 rno-miR-328 93 118 UG-CCUUC-CC-GUCU-CUCCCGguc || | ||| || |||| ||||| ACAGCAAGAGGACAGACAAGGGCaga Ring1; Rnf1 rno-miR-331 13 37 aaGAUC--CUA-UCCGGGU-CCCCg | || ||| :|| ||| |||| agCCAGAAGATGGGGACCATGGGGt Ring1; Rnf1 rno-miR-341 214 238 UGACU-GG---CUGGCUGGCUAGCU || || || |||| : ||:|||| ACCGAGCCGGTGACCCGGCGGTCGA Ring1; Rnf1 rno-miR-346 99 120 UCUCC-GUCCGUGAGUCCGUCUGu ||||| ||| || :||||||| AGAGGACAG--ACAAGGGCAGACg Ring1; Rnf1 rno-miR-349 99 124 UCUCCAAUUCUGU---CGUC--CCGAc ||||| ||||| |||| |||| AGAGG-ACAGACAAGGGCAGACGGCTt Ring1; Rnf1 rno-miR-34a 184 213 uUGUUGG--UCGAUUCU-----GUGACGGu || :|| ||| |: ||||||| tACTGCCTTTTCTATGGGCCCCCACTGCCc Ring1; Rnf1 rno-miR-34b 169 192 guuagucgauuaaUG-UGACGGAu || ||||||| gggacccgcgcccACTACTGCCTt Ring1; Rnf1 rno-miR-369-5p 216 241 GCUU--AUAUUG---UGCCAGCUAGa |||: :|:|| :||||||| | CGAGCCGGTGACCCGGCGGTCGAACa Ring1; Rnf1 rno-miR-370 146 171 UUGGUCCAAGGUG----GGGUCGU-CCg |||:|| ||:|: : ||||| || AACTAG--TCTATATTGTACAGCACGGg Ring1; Rnf1 rno-miR-376c 30 48 GCACUUUAAAGGAGAUACAa | ||:::| | ||||:||| CATGGGGTGT-CTCTGTGTc Ring1; Rnf1 rno-miR-377 29 50 GGUUUUCAACGGAAACACAcua ||| ::| ||:|| ||||| CCATGGGGTGTCTCTGTGTccc Ring1; Rnf1 rno-miR-382 44 69 CUUAGG--UG-GU--GCUUGUUGAAG | :||| :| || | :|||:|||| GTGTCCCAGCTCAGCCTGACAGCTTC Ring1; Rnf1 rno-miR-422b 38 58 CGGAAGACUGAGGUUCAGGUCa |:| |||| ||| || :||| GTC-TCTGTGTCCCAGCTCAGc Ring1; Rnf1 rno-miR-483 17 39 UGUUCUGCCCUCCCCUCCUCACu | ||||:|||: ||:||| AGAAGATGGGGACCATGGGGTGt Ring1; Rnf1 rno-miR-485 1 19 cuuaaGUAGUG--CCGGUCGGaga |:|||| || ||||| -----CGTCACAGGGACAGCCaga Ring1; Rnf1 rno-miR-99b 182 203 gcguucCAGCCAAGAUGCCCac | | |||||:||| actactGCCTTTTCTATGGGcc Ring1; Rnf1 rno-miR-143 68 75 AC----------------UCGAUGUCA------CGAAGUAGAGU |||| ||| |||||||||| GGGGUGUCUCUGUGUCCCAGCU-CAGCCUGACAGCUUCAUCUCC Ring1; Rnf1 rno-miR-346 113 120 ---------------------UCUCC-GUCCGUGAGUCCGUCUGU ||||| ||| || :|||||||: AAGCCCCCCAGCCAGACAGCAAGAGGACAGACAA--GGGCAGACGG Ring1; Rnf1 rno-miR-34a 206 213 U-------------UGUUGGUC--GAU-UCU----GUGACGGU || :|| ||| :|: ||||||| GACCCGCGCCCACUACUGCCUUUUCUAUGGGCCCCCACUGCCC Ring1; Rnf1 rno-miR-34b 185 192 GUUAGU--------------------CGAUUAAUGUGACGGAU || :||||||| AGUCUAUAUUGUACAGCACGGGACCCGCGCCCACUACUGCCUU Ring1; Rnf1 rno-miR-449 206 213 -UGGUCGA---------------------UUGUUAUGUGACGGU ||| || ::| ||||||| GACCCGCGCCCACUACUGCCUUUUCUAUGGGCCCC-CACUGCCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ring1 RAID00589357 rno-miR-346 miRNA MIMAT0000596 Ring1 mRNA 309626 Prediction 0.1828 Ring1 RAID00866322 rno-miR-539-5p miRNA MIMAT0003176 Ring1 mRNA 309626 Prediction 0.1828 Ring1 RAID01324925 rno-miR-3570 miRNA MIMAT0017850 Ring1 mRNA 309626 Prediction 0.1828 Ring1 RAID01530714 rno-miR-3085 miRNA MIMAT0017805 Ring1 mRNA 309626 Prediction 0.1828 Ring1 RAID01819571 rno-miR-143-3p miRNA MIMAT0000849 Ring1 mRNA 309626 Prediction 0.1828 Ring1 RAID02315244 rno-miR-30c-2-3p miRNA MIMAT0005442 Ring1 mRNA 309626 Prediction 0.1828 Ring1 RAID03078907 rno-miR-568 miRNA MIMAT0012832 Ring1 mRNA 309626 Prediction 0.1828 Ring1 RAID03455457 rno-miR-338-5p miRNA MIMAT0004646 Ring1 mRNA 309626 Prediction 0.1828 Ring1 RAID03744723 rno-miR-186-5p miRNA MIMAT0000863 Ring1 mRNA 309626 Prediction 0.1828