DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000554 rno-miR-324-3p 294287 Phf1 ggUCGUCGUGGACCCC-GUCACc || : | :|||||| ||||| gcAGGGACCUCUGGGGACAGUGa 2 21 110 132 [rn4:20:5174228-5174250:+] 0.5965 132 0 -27.71 -0.1498 MIMAT0000570 rno-miR-331 294287 Phf1 aaGAUCCUAUC-CGGGUCCCCg | ||| |:| :||||||| gcCCAGGCUGGAAUCCAGGGGg 2 20 112 133 [rn4:20:5174827-5174848:+] 0.5524 154 7 -22.79 -0.1879 MIMAT0000570 rno-miR-331 294287 Phf1 aaGAUCCUAUC-CGGGUCCCCg | ||| |:| :||||||| gcCCAGGCUGGAAUCCAGGGGg 2 20 545 566 [rn4:20:5174827-5174848:+] 0.5524 154 7 -22.79 -0.1458 MIMAT0000585 rno-miR-340-3p 294287 Phf1 ccGAUAUUUCAUUGA---CUCUGCCu ||: :| ||| || ||||||| agCUGGGAUGUACCUGGAGAGACGGa 2 22 71 96 [rn4:20:5174786-5174811:+] 0.5524 156 7 -23.02 -0.3108 MIMAT0000585 rno-miR-340-3p 294287 Phf1 ccGAUAUUUCAUUGA---CUCUGCCu ||: :| ||| || ||||||| agCUGGGAUGUACCUGGAGAGACGGa 2 22 504 529 [rn4:20:5174786-5174811:+] 0.5524 156 7 -23.02 -0.2457 MIMAT0000599 rno-miR-349 294287 Phf1 ucuccaaUUCUGUCGUC-CCGAc |:|:|||||| |||| agcuaccAGGGCAGCAGCGGCUa 2 16 5 27 [rn4:20:5173778-5173800:+] 0.7093 131 0 -22.36 -0.4428 MIMAT0004708 rno-miR-9* 294287 Phf1 ugaAAGCCAAUAGAUCGAAAua ||: |||| | |||||| uuaUUUUGUUA-C-AGCUUUug 3 20 199 218 [rn4:20:5174914-5174933:+] 0.5524 135 0 -8.82 -0.1181 MIMAT0000813 rno-miR-34b 294287 Phf1 guuaGUCGAUUAAUGUGACGGAu || || | |: ||||||| ucccCA-CUCAGUG-ACUGCCUc 2 20 196 216 [rn4:20:5174478-5174498:+] 0.5856 147 7 -15.41 -0.1963 MIMAT0000884 rno-miR-181a* 294287 Phf1 ccAUGUUAGUUGCCAGCU-ACCa |:||:| : ||||| ||| ugUGCAGUACCUAGUCGAGUGGg 2 21 391 413 [rn4:20:5174673-5174695:+] 0.7014 120 0 -18.98 -0.4532 MIMAT0005446 rno-miR-219-2-3p 294287 Phf1 ugucuacagGUCGGUGUU-AAGa |:||:|||| ||| gggcagcagCGGCUACAACUUCc 2 14 13 35 [rn4:20:5173786-5173808:+] 0.7093 121 0 -16.40 -0.1747 MIMAT0000894 rno-miR-291a-5p 294287 Phf1 ucucucccGGAGGUGAAACUAc | |:| ||||||| cccccuccCAUUCCCUUUGAUg 2 15 177 198 [rn4:20:5174892-5174913:+] 0.5524 150 7 -18.00 -0.6244 MIMAT0000894 rno-miR-291a-5p 294287 Phf1 ucucucccGGAGGUGAAACUAc | |:| ||||||| cccccuccCAUUCCCUUUGAUg 2 15 610 631 [rn4:20:5174892-5174913:+] 0.5524 150 7 -18.00 -0.5296 MIMAT0000901 rno-miR-299 294287 Phf1 uacauacacccugccAUUUGGu |||||| acuaauaaagagaaaUAAACC- 2 8 292 312 [rn4:20:5175007-5175027:+] 0.5524 120 6 -5.05 -0.2294 MIMAT0000901 rno-miR-299 294287 Phf1 uacauacacccugccAUUUGGu |||||| acuaauaaagagaaaUAAACCu 2 8 725 746 [rn4:20:5175007-5175028:+] 0.5524 120 6 -5.95 -0.1944 MIMAT0003115 rno-miR-207 294287 Phf1 uucccucCUCUCGGUCCUCUUCg |:|:|:: ||||||| gaauccaGGGGGUU-GGAGAAGa 2 17 122 143 [rn4:20:5174837-5174858:+] 0.5524 150 7 -21.67 -0.1714 MIMAT0003115 rno-miR-207 294287 Phf1 uucccucCUCUCGGUCCUCUUCg |:|:|:: ||||||| gaauccaGGGGGUU-GGAGAAGa 2 17 555 576 [rn4:20:5174837-5174858:+] 0.5524 150 7 -21.67 -0.1328 MIMAT0003174 rno-miR-540 294287 Phf1 gguccuaGCUGGAGACUGGa :||||||||||| cacgcccUGACCUCUGACCu 2 14 44 63 [rn4:20:5174759-5174778:+] 0.5681 161 7 -27.05 -0.1605 MIMAT0003174 rno-miR-540 294287 Phf1 gguccuaGCUGGAGACUGGa :||||||||||| cacgcccUGACCUCUGACCu 2 14 477 496 [rn4:20:5174759-5174778:+] 0.5681 161 7 -27.05 -0.1318 MIMAT0003177 rno-miR-541 294287 Phf1 ucacACUG--GUUGUAGUCU-UAGGGAa ||:| | || |||| |||||| acauUGGCUUCCCCA-CAGACAUCCCUa 2 22 162 188 [rn4:20:5174444-5174470:+] 0.5856 122 6 -18.16 -0.9633 MIMAT0003209 rno-miR-363* 294287 Phf1 uuuAACGUAGCACUAGGUGGGc | || || | ||||||| uguUCGCCUCCU--UCCACCCu 2 20 78 97 [rn4:20:5174196-5174215:+] 0.6707 148 7 -15.71 -0.6004 MIMAT0005329 rno-miR-674-5p 294287 Phf1 augugguGAGGGUAGAGUCACg ||||| ||||||| aaaaguuCUCCCCACUCAGUGa 2 16 188 209 [rn4:20:5174470-5174491:+] 0.5856 159 7 -23.66 -0.5490 MIMAT0005337 rno-miR-760-3p 294287 Phf1 agGGGUGUC---UGGGUC-UCGGc |||:| | :||||| |||| cgCCCGCUGUCUGCCCAGCAGCCc 2 19 46 69 [rn4:20:5173819-5173836,5174182-5174187:+] 0.6900 121 0 -25.62 -0.1943 MIMAT0012830 rno-miR-504 294287 Phf1 cuGUCUCAC--GUCUGGUCCCAGa |:|:||| | ::||||||| ccCGGGGUGACCCUGUCAGGGUCc 2 21 339 362 [rn4:20:5174621-5174644:+] 0.6435 155 7 -25.64 -0.1673 MIMAT0012837 rno-miR-632 294287 Phf1 aggccguccuuUGUCUGUg ||||||| uuggcuuccccACAGACAu 2 9 165 183 [rn4:20:5174447-5174465:+] 0.5856 140 7 -16.59 -0.1685 MIMAT0012848 rno-miR-294 294287 Phf1 ucuaucccggagguAAAACUc |||||| uauuuuguuacagcUUUUGAa 2 8 200 220 [rn4:20:5174915-5174935:+] 0.5524 120 6 -4.08 -0.2207 MIMAT0012848 rno-miR-294 294287 Phf1 ucuaucccggagguAAAACUc |||||| uauuuuguuacagcUUUUGAa 2 8 633 653 [rn4:20:5174915-5174935:+] 0.5524 120 6 -4.08 -0.1729 MIMAT0012859 rno-miR-711 294287 Phf1 gaauguaGAGAGGGUCCCAGGg | || :|||||||| ggggugaCCCUGUCAGGGUCCu 2 16 342 363 [rn4:20:5174624-5174645:+] 0.6435 155 7 -23.60 -0.1671 MIMAT0000602 rno-miR-20a 294287 Phf1 gauGGACGUG-AUAUUCGUGAAAu | ||||| | :||||||| cccCAUGCACACACUGGCACUUUc 2 21 21 44 [rn4:20:5174736-5174759:+] 0.5838 155 7 -18.02 -0.2111 MIMAT0000602 rno-miR-20a 294287 Phf1 gauGGACGUG-AUAUUCGUGAAAu | ||||| | :||||||| cccCAUGCACACACUGGCACUUUc 2 21 454 477 [rn4:20:5174736-5174759:+] 0.5838 155 7 -18.02 -0.1766 MIMAT0000606 rno-miR-7a 294287 Phf1 uguuguUUUAGUGAUCAGAAGGu :| | || ||||||| cucaguGACUGCCUCGUCUUCCu 2 18 202 224 [rn4:20:5174484-5174506:+] 0.5856 149 7 -16.36 -0.1225 MIMAT0000775 rno-let-7b 294287 Phf1 uuGGUGUG---UUGGAUGA-UGGAGu :|||:| :|||| || ||||| uuUCACGCCCUGACCU-CUGACCUCa 2 21 41 65 [rn4:20:5174756-5174780:+] 0.5681 121 0 -23.46 -0.3396 MIMAT0000775 rno-let-7b 294287 Phf1 uuGGUGUG---UUGGAUGA-UGGAGu :|||:| :|||| || ||||| uuUCACGCCCUGACCU-CUGACCUCa 2 21 474 498 [rn4:20:5174756-5174780:+] 0.5681 121 0 -23.46 -0.2832 MIMAT0000779 rno-let-7i 294287 Phf1 uuGUCGUGUUUG-AUGA-UGGAGu |||| || : |:|| ||||| --CAGCUCACUUGUGCUCACCUCc 2 21 1 22 [rn4:20:5174716-5174737:+] 0.6426 123 0 -15.31 -0.4133 MIMAT0000779 rno-let-7i 294287 Phf1 uuGUCGUGUUUG-AUGA-UGGAGu |||| || : |:|| ||||| gaCAGCUCACUUGUGCUCACCUCc 2 21 432 455 [rn4:20:5174714-5174737:+] 0.6426 123 0 -18.19 -0.2721 MIMAT0000780 rno-miR-7b 294287 Phf1 uguuguUUUAGUGUUCAGAAGGu :| | | ||||||| cucaguGACUGCCUCGUCUUCCu 2 18 202 224 [rn4:20:5174484-5174506:+] 0.5856 141 7 -14.74 -0.1225 MIMAT0000786 rno-miR-17-5p 294287 Phf1 gauggacGUGACAUUCGUGAAAc ||||| ||||||| augcacaCACUG---GCACUUUc 2 17 25 44 [rn4:20:5174740-5174759:+] 0.5838 148 7 -15.73 -0.1947 MIMAT0000786 rno-miR-17-5p 294287 Phf1 gauggacGUGACAUUCGUGAAAc ||||| ||||||| augcacaCACUG---GCACUUUc 2 17 458 477 [rn4:20:5174740-5174759:+] 0.5838 148 7 -15.73 -0.1625 MIMAT0000814 rno-miR-34c 294287 Phf1 cguuagucGAU-UG-AUGUGACGGa ||| || | ||||||| aggccuuuCUAGACAUUCACUGCCc 2 16 244 268 [rn4:20:5174526-5174550:+] 0.5856 149 7 -16.47 -0.5678 MIMAT0000815 rno-miR-34a 294287 Phf1 uguuggucgauucuGUGACGGu ||||||| ccuuucuagacauuCACUGCCc 2 9 247 268 [rn4:20:5174529-5174550:+] 0.5856 140 7 -16.94 -0.5678 MIMAT0000817 rno-miR-93 294287 Phf1 gauGGACGUGCUUG-UCGUGAAAc | ||||| || :||||||| cccCAUGCACACACUGGCACUUUc 2 21 21 44 [rn4:20:5174736-5174759:+] 0.5838 163 7 -20.49 -0.2131 MIMAT0000817 rno-miR-93 294287 Phf1 gauGGACGUGCUUG-UCGUGAAAc | ||||| || :||||||| cccCAUGCACACACUGGCACUUUc 2 21 454 477 [rn4:20:5174736-5174759:+] 0.5838 163 7 -20.49 -0.1783 MIMAT0000825 rno-miR-106b 294287 Phf1 uagACGUGACAG-UCGUGAAAu ||||| | :||||||| ccaUGCACACACUGGCACUUUc 2 19 23 44 [rn4:20:5174738-5174759:+] 0.5838 153 7 -15.44 -0.2092 MIMAT0000825 rno-miR-106b 294287 Phf1 uagACGUGACAG-UCGUGAAAu ||||| | :||||||| ccaUGCACACACUGGCACUUUc 2 19 456 477 [rn4:20:5174738-5174759:+] 0.5838 153 7 -15.44 -0.1749 MIMAT0000852 rno-miR-146a 294287 Phf1 uuGGGUACCU-UAAG-----UCAAGAGu |||| || || | ||||||| ucCCCACAGACAUCCCUAAAAGUUCUCc 2 21 171 198 [rn4:20:5174453-5174480:+] 0.5856 142 7 -13.41 -0.5638 MIMAT0000869 rno-miR-194 294287 Phf1 aggugUACCUCAACGACAAUGu ||| || :|||||| cuuugAUGUUAUU-UUGUUACa 2 18 191 211 [rn4:20:5174906-5174926:+] 0.5524 131 6 -10.43 -0.1981 MIMAT0000869 rno-miR-194 294287 Phf1 aggugUACCUCAACGACAAUGu ||| || :|||||| cuuugAUGUUAUU-UUGUUACa 2 18 624 644 [rn4:20:5174906-5174926:+] 0.5524 131 6 -10.43 -0.1546 MIMAT0000872 rno-miR-199a-5p 294287 Phf1 cuuguccaucagacuUGUGACCc ||||||| caccuccccaugcacACACUGGc 2 9 449 471 [rn4:20:5174731-5174753:+] 0.5838 140 7 -12.21 -0.1105 MIMAT0000903 rno-miR-320 294287 Phf1 agCGGGAGAGUUGGGUCGAAAa |:: |:|:: : ||||||| auGUUAUUUUGUUACAGCUUUu 2 21 196 217 [rn4:20:5174911-5174932:+] 0.5524 152 7 -13.18 -1.1950 MIMAT0000903 rno-miR-320 294287 Phf1 agCGGGAGAGUUGGGUCGAAAa |:: |:|:: : ||||||| auGUUAUUUUGUUACAGCUUUu 2 21 629 650 [rn4:20:5174911-5174932:+] 0.5524 152 7 -13.18 -1.1472 MIMAT0001543 rno-miR-449a 294287 Phf1 uggucGAUUGUUAUGUGACGGu |||: || ||||||| ccuuuCUAGACAUUCACUGCCc 2 18 247 268 [rn4:20:5174529-5174550:+] 0.5856 157 7 -17.54 -0.5678 MIMAT0003201 rno-miR-382 294287 Phf1 gcuuagGUGGU-GCU--UGUUGAAg || || ||: ||||||| ccagggCAGCAGCGGCUACAACUUc 2 17 10 34 [rn4:20:5173783-5173807:+] 0.7093 146 7 -18.19 -0.1787 MIMAT0003211 rno-miR-20b-5p 294287 Phf1 uggACGUG-AUACUCGUGAAAc ||||| | :||||||| ccaUGCACACACUGGCACUUUc 2 19 23 44 [rn4:20:5174738-5174759:+] 0.5838 153 7 -16.79 -0.2111 MIMAT0003211 rno-miR-20b-5p 294287 Phf1 uggACGUG-AUACUCGUGAAAc ||||| | :||||||| ccaUGCACACACUGGCACUUUc 2 19 456 477 [rn4:20:5174738-5174759:+] 0.5838 153 7 -16.79 -0.1766 MIMAT0005284 rno-miR-874 294287 Phf1 agccagggagcccGGUCCCGUc |||||||| ----ccagagcuaCCAGGGCAg 2 10 1 18 [rn4:20:5173774-5173791:+] 0.7093 145 7 -22.33 -0.4449 MIMAT0005320 rno-miR-495 294287 Phf1 uucuucacgugguacAAACAAa |||||| ucccuuugauguuauUUUGUUa 2 8 188 209 [rn4:20:5174903-5174924:+] 0.5524 120 6 -5.46 -0.1276 MIMAT0005595 rno-miR-146b 294287 Phf1 ugucggauaccuuaagUCAAGAGu ||||||| cacagacaucccuaaaAGUUCUCc 2 9 175 198 [rn4:20:5174457-5174480:+] 0.5856 140 7 -13.38 -0.5638

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G054972 Phf1 Rattus norvegicus 294287