DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004743 rno-miR-300-5p 294210 Trim10 uguUUCCUAUUGGA---GAGAAGUu || | |||:| ||||||| uuuAAACAAAACUUUGCCUCUUCAu 2 20 313 337 [rn4:20:1782040-1782064:-] 0.5477 150 7 -12.48 -0.7738 MIMAT0005333 rno-miR-742 294210 Trim10 aaAUGGGUUGU-ACCACCGAAAg || | |||| || ||||||| ugUA-CAAACAGUGCUGGCUUUu 2 21 237 258 [rn4:20:1782119-1782140:-] 0.5477 161 7 -16.54 -0.3714 MIMAT0012827 rno-miR-1224 294210 Trim10 gagGUGGAGGGGU--CAGG-AGUg | ::|||||| |||| ||| aagCCUUUCCCCAGUGUCCAUCAg 2 19 140 163 [rn4:20:1782214-1782237:-] 0.4704 125 0 -24.53 -0.2257 MIMAT0012837 rno-miR-632 294210 Trim10 aggccguCCUUUGUCUGUg ||: ||||||| caucaacGGGCACAGACAu 2 13 215 233 [rn4:20:1782144-1782162:-] 0.5312 148 7 -17.38 -0.1708 MIMAT0000606 rno-miR-7a 294210 Trim10 uguuguuuuagugaucAGAAGGu |||||| ccucuucauucuguuuUCUUCCa 2 8 329 351 [rn4:20:1782026-1782048:-] 0.5198 120 6 -10.96 -0.2515 MIMAT0000608 rno-miR-351 294210 Trim10 agUCCGAGUUUCCCGAGGAGUCCCu || || | | | ||||||| ccAGUGUCCAUCAGAUGCUCAGGGu 2 24 150 174 [rn4:20:1782203-1782227:-] 0.4704 151 7 -20.62 -0.1087 MIMAT0000780 rno-miR-7b 294210 Trim10 uguuguuuuaguguucAGAAGGu |||||| ccucuucauucuguuuUCUUCCa 2 8 329 351 [rn4:20:1782026-1782048:-] 0.5198 120 6 -10.43 -0.2515 MIMAT0000781 rno-miR-9 294210 Trim10 aguaugucgaucuauuGGUUUCu |||||| uucauucuguuuucuuCCAAAGa 2 8 333 355 [rn4:20:1782022-1782044:-] 0.5198 120 6 -14.33 -0.2397 MIMAT0000829 rno-miR-125a-5p 294210 Trim10 aguGUC-CAAUU--UCCCAGAGUCCCu ||| || | || ||||||| cccCAGUGUCCAUCAGAUGCUCAGGGu 2 22 148 174 [rn4:20:1782203-1782229:-] 0.4704 143 7 -18.56 -0.1076 MIMAT0000830 rno-miR-125b-5p 294210 Trim10 aguguucAAUCCCAGAGUCCCu | || ||||||| guguccaUCAGAUGCUCAGGGu 2 16 153 174 [rn4:20:1782203-1782224:-] 0.4704 143 7 -16.21 -0.1076 MIMAT0000860 rno-miR-183 294210 Trim10 ucacuuAAGAUGGUCAC-GGUAu ||: |||||| |||| caagccUUUCCCCAGUGUCCAUc 2 17 139 161 [rn4:20:1782216-1782238:-] 0.4704 124 0 -15.69 -0.2589 MIMAT0000874 rno-miR-200a 294210 Trim10 ugUAGCAAUGGU-CUGU-CACAAu || |||: | |:|| ||||| agAUAGUUGGGAUGGCAUGUGUUa 2 21 74 97 [rn4:20:1782280-1782303:-] 0.4679 123 0 -13.70 -0.4614 MIMAT0000876 rno-miR-203 294210 Trim10 gaucaccAGGAUUUGUAAAGUg |: | |:|||||| agcuaauUUAUUCAUAUUUCAa 2 16 360 381 [rn4:20:1781996-1782017:-] 0.4919 131 6 -7.47 -0.1270 MIMAT0003208 rno-miR-374 294210 Trim10 gugAAUCGUCCAACAUAA-UAUa ||||| || |||| ||| auaUUAGCUAAUU-UAUUCAUAu 2 20 355 376 [rn4:20:1782001-1782022:-] 0.4919 121 0 -5.40 -1.0656

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim31 RAID00070398 rno-miR-362-3p miRNA MIMAT0017357 Trim31 mRNA 294208 Prediction 0.1828 Trim31 RAID00200103 rno-miR-352 miRNA MIMAT0000610 Trim31 mRNA 294208 Prediction 0.1828 Trim10 RAID00651427 rno-miR-125b-5p miRNA MIMAT0000830 Trim10 mRNA 294210 Prediction 0.1828 Trim31 RAID00706174 rno-miR-329-3p miRNA MIMAT0000566 Trim31 mRNA 294208 Prediction 0.1828 Trim10 RAID00896999 rno-miR-466d miRNA MIMAT0017824 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID01088389 rno-miR-351-5p miRNA MIMAT0000608 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID01154579 rno-miR-7b miRNA MIMAT0000780 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID01304359 rno-miR-466b-5p miRNA MIMAT0005278 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID01500768 rno-miR-125a-5p miRNA MIMAT0000829 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID01555345 rno-miR-369-3p miRNA MIMAT0003207 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID01584186 rno-miR-501-5p miRNA MIMAT0003116 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID02397672 rno-miR-374-5p miRNA MIMAT0003208 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID02559105 rno-miR-203a-3p miRNA MIMAT0000876 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID02669897 rno-miR-7a-5p miRNA MIMAT0000606 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID03566498 rno-miR-183-5p miRNA MIMAT0000860 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID03579979 rno-miR-9a-5p miRNA MIMAT0000781 Trim10 mRNA 294210 Prediction 0.1828 Trim31 RAID03640954 rno-miR-764-5p miRNA MIMAT0012854 Trim31 mRNA 294208 Prediction 0.1828 Trim10 RAID03700182 rno-miR-200a-3p miRNA MIMAT0000874 Trim10 mRNA 294210 Prediction 0.1828 Trim10 RAID03731166 rno-miR-210-3p miRNA MIMAT0000881 Trim10 mRNA 294210 Prediction 0.1828