DNA & RNA Element - microRNA |
Mirbase Acc | miRNA Name | Gene ID | Gene Symbol | miRNA Alignment | Alignment | Gene Alignment | miRNA Start | miRNA End | Gene Start | Gene End | Genome Coordinates | Conservation | Align Score | Seed Cat | Energy | mirSVR Score |
MIMAT0000550 | rno-miR-323 | 309591 | Trim39 | ucuccagcuggCACAUUACAc | | ||||||| | cucuuuucuuaGGGUAAUGUu | 2 | 11 | 559 | 579 | [rn4:20:2105063-2105083:+] | 0.6270 | 142 | 7 | -7.26 | -0.7530 |
MIMAT0000554 | rno-miR-324-3p | 309591 | Trim39 | ggUCGUCGUGGACCCCGUCACc | :| || |: | ||||||| | guGGAAG-AUGAGUGGCAGUGg | 2 | 21 | 407 | 427 | [rn4:20:2104911-2104931:+] | 0.6270 | 146 | 7 | -21.03 | -0.4859 |
MIMAT0000574 | rno-miR-140* | 309591 | Trim39 | ggCACCAAGAUGGGACACCAu | ||| |: | ||||||| | uuGUGCCUUGA--CUGUGGUu | 2 | 20 | 1244 | 1262 | [rn4:20:2105748-2105766:+] | 0.6677 | 144 | 7 | -17.71 | -0.7528 |
MIMAT0000576 | rno-miR-336 | 309591 | Trim39 | ucuGA-UCUAUACC-UUCCCACu | || :|| | || ||||||| | gauCUGGGAGAAGGAAAGGGUGg | 2 | 19 | 612 | 634 | [rn4:20:2105116-2105138:+] | 0.6270 | 152 | 7 | -20.97 | -0.5135 |
MIMAT0000585 | rno-miR-340-3p | 309591 | Trim39 | ccGAUAUUUCAUUGACU-CUGCCu | :|| |||| : | || ||||| | ugUUACAAAGGGCCAGAUGACGGc | 2 | 22 | 962 | 985 | [rn4:20:2105466-2105489:+] | 0.6510 | 129 | 0 | -15.47 | -0.3120 |
MIMAT0000591 | rno-miR-343 | 309591 | Trim39 | agacCCG-UGUGCCUC-CCUCu | ||| || :|||| |||| | ccaaGGCAACUUGGAGAGGAGu | 2 | 17 | 781 | 802 | [rn4:20:2105285-2105306:+] | 0.7022 | 123 | 0 | -23.53 | -0.4723 |
MIMAT0000599 | rno-miR-349 | 309591 | Trim39 | ucUCCAAUUCUGUCGUC-CCGAc | | | |:|| ::|||| |||| | ggAAGAUGAG-UGGCAGUGGCUg | 2 | 21 | 409 | 430 | [rn4:20:2104913-2104934:+] | 0.6270 | 122 | 0 | -19.84 | -0.1942 |
MIMAT0000603 | rno-miR-20a* | 309591 | Trim39 | acAUU-CACGAGCAUUACGUCa | ||| ||||: ||||||| | cuUAAUUUGCUUAAAAUGCAGg | 2 | 20 | 300 | 321 | [rn4:20:2104804-2104825:+] | 0.6270 | 158 | 7 | -13.67 | -0.6479 |
MIMAT0004717 | rno-miR-29b-2* | 309591 | Trim39 | gaUUCGGUGGUACACUUUGGUc | :|||||:| || ||||||| | uuGAGCCAUCUUGAGAAACCAc | 2 | 21 | 98 | 119 | [rn4:20:2104602-2104623:+] | 0.5396 | 176 | 7 | -25.27 | -0.2142 |
MIMAT0004717 | rno-miR-29b-2* | 309591 | Trim39 | gaUUCGGUGGUACACUUUGGUc | ||| | :: ||||||| | aaAAGGCUUUUCCAGAAACCAa | 2 | 21 | 262 | 283 | [rn4:20:2104766-2104787:+] | 0.5396 | 144 | 7 | -15.32 | -0.3685 |
MIMAT0000894 | rno-miR-291a-5p | 309591 | Trim39 | ucUCUCCCGGAGGUGAAACUAc | | :||| :|: ||||||| | gaACGGGGAUUU--CUUUGAUc | 2 | 21 | 540 | 559 | [rn4:20:2105044-2105063:+] | 0.6270 | 149 | 7 | -12.77 | -0.7625 |
MIMAT0003115 | rno-miR-207 | 309591 | Trim39 | uuccCUCC---UCUCGGUCCUCUUCg | |||| ||| |::||||||| | gccaGAGGUUCAGAUCUGGGAGAAGg | 2 | 20 | 600 | 625 | [rn4:20:2105104-2105129:+] | 0.6270 | 162 | 7 | -24.65 | -0.3757 |
MIMAT0003115 | rno-miR-207 | 309591 | Trim39 | uucccUCCUCUCGGUCC-UCUUCg | | || ||| :|| ||||| | accccACGACAGCAGGGUAGAAGa | 2 | 19 | 928 | 951 | [rn4:20:2105432-2105455:+] | 0.6510 | 126 | 0 | -15.02 | -0.1817 |
MIMAT0003116 | rno-miR-501 | 309591 | Trim39 | aaaguggguCCCUGUUUCCUAa | || ||||||||| | ugaaaauauGGAACAAAGGAUc | 2 | 14 | 1288 | 1309 | [rn4:20:2105792-2105813:+] | 0.6677 | 157 | 7 | -14.61 | -0.6975 |
MIMAT0003121 | rno-miR-483 | 309591 | Trim39 | ugUUCUGCCCUCCCCUCCUCACu | ::|| |: | ||||||| | caGGGAAAAGGCUGAAGGAGUGu | 2 | 22 | 498 | 520 | [rn4:20:2105002-2105024:+] | 0.6270 | 145 | 7 | -19.96 | -0.7830 |
MIMAT0003124 | rno-miR-412 | 309591 | Trim39 | ugcCGAUCACCUGGUCCACUUca | | || | : : |||||| | caaGAUAAUUUGGUUGGUGAAaa | 3 | 21 | 1271 | 1293 | [rn4:20:2105775-2105797:+] | 0.6677 | 124 | 0 | -10.81 | -0.1787 |
MIMAT0004787 | rno-miR-543 | 309591 | Trim39 | cgcuuuuugugcgcCCGUUGAa | ||||||| | uccauuguucccaaGGCAACUu | 2 | 9 | 771 | 792 | [rn4:20:2105275-2105296:+] | 0.7022 | 140 | 7 | -14.35 | -0.8779 |
MIMAT0003175 | rno-miR-543* | 309591 | Trim39 | ucuucacguggcgCUUACAAa | ||||||| | cucuggccuuaaaGAAUGUUa | 2 | 9 | 838 | 858 | [rn4:20:2105342-2105362:+] | 0.7022 | 140 | 7 | -8.59 | -1.1250 |
MIMAT0003175 | rno-miR-543* | 309591 | Trim39 | ucuucacguGGCGCUUACAaa | | | |||||| | uccccuuuuCAGAGAAUGUaa | 3 | 13 | 1020 | 1040 | [rn4:20:2105524-2105544:+] | 0.6510 | 124 | 0 | -5.54 | -0.1626 |
MIMAT0003209 | rno-miR-363* | 309591 | Trim39 | uuuAACGUAGCACUAGGUGGGc | || |||| ||||||| | uguUUCCAUC---CUCCACCCu | 2 | 20 | 994 | 1012 | [rn4:20:2105498-2105516:+] | 0.6510 | 147 | 7 | -15.33 | -0.5460 |
MIMAT0003382 | rno-miR-664 | 309591 | Trim39 | auCCGAC-CCCUCA--------UUUACUUAu | ||||| ||||| |||||||| | aaGGCUGAAGGAGUGUUUCUAGAAAUGAAUg | 2 | 21 | 505 | 535 | [rn4:20:2105009-2105039:+] | 0.6270 | 146 | 7 | -25.09 | -0.5903 |
MIMAT0005278 | rno-miR-466b | 309591 | Trim39 | guaccuguAUG-UGUGUGUGUAu | |:| | |||||||| | agcgauucUGCAAGACACACAUc | 2 | 15 | 742 | 764 | [rn4:20:2105246-2105268:+] | 0.5810 | 149 | 7 | -15.42 | -0.3061 |
MIMAT0005286 | rno-miR-878 | 309591 | Trim39 | agauggGUCAUACCACAGUACg | ||||: | ||||||| | gaguggCAGUG-GCUGUCAUGa | 2 | 17 | 416 | 436 | [rn4:20:2104920-2104940:+] | 0.6270 | 154 | 7 | -17.93 | -0.2187 |
MIMAT0005287 | rno-miR-879 | 309591 | Trim39 | ccgAAUCUCGAUAUUCGGAGa | | | :|| |||||||| | agaUGACGGC--UAAGCCUCu | 2 | 19 | 976 | 994 | [rn4:20:2105480-2105498:+] | 0.6510 | 147 | 7 | -15.34 | -0.4436 |
MIMAT0005288 | rno-miR-880 | 309591 | Trim39 | agaugagUCUUACUUACCUCAu | | :|| |||||||| | agaagggAAGAU-AAUGGAGUc | 2 | 16 | 901 | 921 | [rn4:20:2105405-2105425:+] | 0.6510 | 149 | 7 | -12.99 | -0.2400 |
MIMAT0005323 | rno-miR-532-3p | 309591 | Trim39 | acguucggaacccaCACCCUCc | ||||||| | cucccuccuaacuaGUGGGAGu | 2 | 9 | 189 | 210 | [rn4:20:2104693-2104714:+] | 0.5396 | 140 | 7 | -16.14 | -0.1969 |
MIMAT0005327 | rno-miR-672 | 309591 | Trim39 | aguguguGUCAUGUGGU-UGGAGu | | ||||| || ||||| | uagggauCUGUACA-CAUACCUCu | 2 | 17 | 382 | 404 | [rn4:20:2104886-2104908:+] | 0.6270 | 122 | 0 | -18.04 | -0.1569 |
MIMAT0012823 | rno-miR-490 | 309591 | Trim39 | guCGUACCUCAGG-----AGGUCCAAc | |::|||| ||| |||||||| | gaGUGUGGACUCCCAGGGUCCAGGUUu | 2 | 21 | 207 | 233 | [rn4:20:2104711-2104737:+] | 0.5396 | 159 | 7 | -24.48 | -0.1888 |
MIMAT0012830 | rno-miR-504 | 309591 | Trim39 | cuGUCUCACGUCUGGUCCCAGa | ::|:||| ||: ||||||| | auUGGGGUG-AGG-CAGGGUCa | 2 | 21 | 17 | 36 | [rn4:20:2104521-2104540:+] | 0.5373 | 156 | 7 | -23.47 | -0.2791 |
MIMAT0000564 | rno-miR-328 | 309591 | Trim39 | ugccuucCCGUCUCUCCCGGUc | | :| | ||||||| | gguuuguGUUACAAAGGGCCAg | 2 | 16 | 956 | 977 | [rn4:20:2105460-2105481:+] | 0.6510 | 147 | 7 | -17.65 | -0.5065 |
MIMAT0000606 | rno-miR-7a | 309591 | Trim39 | uguugUUUUAGUG-AUCAGAAGGu | ||:|| |: |||||||| | aagggAAGAUAAUGGAGUCUUCCu | 2 | 19 | 903 | 926 | [rn4:20:2105407-2105430:+] | 0.6510 | 157 | 7 | -16.50 | -0.2204 |
MIMAT0000780 | rno-miR-7b | 309591 | Trim39 | uguugUUUUAGUG-UUCAGAAGGu | ||:|| |: :|||||||| | aagggAAGAUAAUGGAGUCUUCCu | 2 | 19 | 903 | 926 | [rn4:20:2105407-2105430:+] | 0.6510 | 161 | 7 | -16.36 | -0.2204 |
MIMAT0000804 | rno-miR-30c | 309591 | Trim39 | cgacUCUCACAUCCUACA-AAUGu | |||| ||:| ||| |||| | uagaAGAGGGUGGUUUGUGUUACa | 2 | 20 | 945 | 968 | [rn4:20:2105449-2105472:+] | 0.6510 | 131 | 0 | -18.00 | -0.6914 |
MIMAT0000806 | rno-miR-30b-5p | 309591 | Trim39 | ucgaCUCACAUCCUACA-AAUGu | ||| ||:| ||| |||| | agaaGAGGGUGGUUUGUGUUACa | 2 | 19 | 946 | 968 | [rn4:20:2105450-2105472:+] | 0.6510 | 126 | 0 | -15.76 | -0.6914 |
MIMAT0000818 | rno-miR-96 | 309591 | Trim39 | ucguuUUUACACGAUCACG-GUUu | |::| | ||||||| ||| | gguccAGGUUUCCUAGUGCACAAg | 2 | 19 | 223 | 246 | [rn4:20:2104727-2104750:+] | 0.5396 | 130 | 0 | -15.97 | -0.2768 |
MIMAT0000828 | rno-miR-124 | 309591 | Trim39 | ccguaAGUGG-CGCACGGAAu | |:||| :||||||| | uccucUUACCUUUGUGCCUUg | 2 | 16 | 1233 | 1253 | [rn4:20:2105737-2105757:+] | 0.6677 | 150 | 7 | -19.41 | -0.8465 |
MIMAT0000842 | rno-miR-136 | 309591 | Trim39 | agguaguagUUUUGUUUACCUCa | ||:|: ||||||| | aaagaagggAAGAU-AAUGGAGu | 2 | 15 | 899 | 920 | [rn4:20:2105403-2105424:+] | 0.6510 | 148 | 7 | -12.97 | -0.4924 |
MIMAT0000852 | rno-miR-146a | 309591 | Trim39 | uugggUACCUUAAGUCAA-GAGu | | || |||||||| ||| | cauugAGGGUAUUCAGUUCCUCc | 2 | 18 | 1182 | 1204 | [rn4:20:2105686-2105708:+] | 0.6677 | 133 | 0 | -15.95 | -0.8087 |
MIMAT0000857 | rno-miR-181c | 309591 | Trim39 | ugaguggcuguccaaCUUACAa | |||||| | auuccccuuuucagaGAAUGUa | 2 | 8 | 1018 | 1039 | [rn4:20:2105522-2105543:+] | 0.6510 | 120 | 6 | -11.73 | -0.1130 |
MIMAT0000858 | rno-miR-181a | 309591 | Trim39 | ugaguggcugucgcaaCUUACAa | |||||| | cauuccccuuuucagaGAAUGUa | 2 | 8 | 1017 | 1039 | [rn4:20:2105521-2105543:+] | 0.6510 | 120 | 6 | -12.83 | -0.1130 |
MIMAT0000859 | rno-miR-181b | 309591 | Trim39 | uggguggcugucguuaCUUACAa | |||||| | cauuccccuuuucagaGAAUGUa | 2 | 8 | 1017 | 1039 | [rn4:20:2105521-2105543:+] | 0.6510 | 120 | 6 | -15.65 | -0.1130 |
MIMAT0000877 | rno-miR-204 | 309591 | Trim39 | ucCGUAUCCUACUGUUUCC-CUu | | :| |||| :||||| || | agGAGUCAGAUGUUAAAGGAGAc | 2 | 21 | 797 | 819 | [rn4:20:2105301-2105323:+] | 0.7022 | 124 | 0 | -15.44 | -0.6616 |
MIMAT0000878 | rno-miR-205 | 309591 | Trim39 | gucugaggccacCUUACUUCCu | ||||||||| | guuucuagaaauGAAUGAAGGg | 2 | 11 | 519 | 540 | [rn4:20:2105023-2105044:+] | 0.6270 | 150 | 7 | -16.66 | -0.7596 |
MIMAT0000879 | rno-miR-206 | 309591 | Trim39 | gguGUGUGAAGGAAUGUAAGGu | ||| ||| | ||||||| | cucCACCCUU--UGACAUUCCc | 2 | 20 | 1004 | 1023 | [rn4:20:2105508-2105527:+] | 0.6510 | 156 | 7 | -18.57 | -0.4870 |
MIMAT0000880 | rno-miR-208 | 309591 | Trim39 | uguucgaaaaacgagCAGAAUa | |||||| | agucuauuggaaaggGUCUUAa | 2 | 8 | 283 | 304 | [rn4:20:2104787-2104808:+] | 0.5833 | 120 | 6 | -7.25 | -0.1235 |
MIMAT0000882 | rno-miR-211 | 309591 | Trim39 | ucCGUUUCCUAC---UGUUUCC-CUu | | |||||:|| | ||||| || | aaGGAAAGGGUGGGAAGAAAGGAGAa | 2 | 21 | 622 | 647 | [rn4:20:2105126-2105151:+] | 0.6270 | 127 | 0 | -23.73 | -0.2803 |
MIMAT0000882 | rno-miR-211 | 309591 | Trim39 | uccguuucCUACUGUUUCC-CUu | |||| :||||| || | aggagucaGAUGUUAAAGGAGAc | 2 | 15 | 797 | 819 | [rn4:20:2105301-2105323:+] | 0.7022 | 122 | 0 | -15.44 | -0.6653 |
MIMAT0000887 | rno-miR-217 | 309591 | Trim39 | uaggucagucaaggaCUACGUCAu | |||||||| | ----------caagaGAUGCAGUu | 2 | 10 | 1 | 14 | [rn4:20:2104505-2104518:+] | 0.6126 | 145 | 7 | -12.67 | -0.1063 |
MIMAT0001543 | rno-miR-449a | 309591 | Trim39 | ugGUCGAUUGUUAUGU-GACGGu | | || |: | ||| ||||| | uuCUGCAAGACACACAUCUGCCc | 2 | 21 | 747 | 769 | [rn4:20:2105251-2105273:+] | 0.6416 | 120 | 0 | -13.22 | -0.7814 |
MIMAT0001626 | rno-miR-431 | 309591 | Trim39 | acguacugccGGACGUUCUGu | :||||||||| | uggaagcgauUCUGCAAGACa | 2 | 12 | 738 | 758 | [rn4:20:2105242-2105262:+] | 0.5810 | 151 | 7 | -20.58 | -0.7235 |
MIMAT0003122 | rno-miR-370 | 309591 | Trim39 | uugguccaaGGUGGGGUCGUCCg | |||| ||||||| | uuccucaccCCACGACAGCAGGg | 2 | 15 | 922 | 944 | [rn4:20:2105426-2105448:+] | 0.6510 | 154 | 7 | -23.57 | -0.2755 |
MIMAT0003123 | rno-miR-377 | 309591 | Trim39 | gguuUUCAACGGAAACACACUa | ::| || ||||||||| | cuguGGGAUG-GUUUGUGUGAa | 2 | 19 | 125 | 145 | [rn4:20:2104629-2104649:+] | 0.5396 | 152 | 7 | -12.70 | -0.5714 |
MIMAT0003125 | rno-miR-1 | 309591 | Trim39 | uauguGUGAAGAAAUGUAAGGu | ||| :|| ||||||| | uccucCACCCUUUGACAUUCCc | 2 | 18 | 1002 | 1023 | [rn4:20:2105506-2105527:+] | 0.6510 | 157 | 7 | -15.52 | -0.4870 |
MIMAT0003179 | rno-miR-542-3p | 309591 | Trim39 | aaAGUCAAU-AGUUAGACAGUGu | | :| || :| |:|||||| | caUAGGGUACAUAUUUUGUCACa | 2 | 21 | 1073 | 1095 | [rn4:20:2105577-2105599:+] | 0.6677 | 135 | 6 | -15.27 | -0.1610 |
MIMAT0003196 | rno-miR-376b-3p | 309591 | Trim39 | uucaccuacaaGGAGAUACUa | |:||||||| | ccuuuaaaaggCUUCUAUGAc | 2 | 11 | 331 | 351 | [rn4:20:2104835-2104855:+] | 0.6270 | 146 | 7 | -11.76 | -0.6208 |
MIMAT0003381 | rno-miR-499 | 309591 | Trim39 | uuUGUAG-UGACGU---UCAGAAUu | | :|| |:|| | :|||||| | ccAAGUCUAUUGGAAAGGGUCUUAa | 2 | 20 | 280 | 304 | [rn4:20:2104784-2104808:+] | 0.5833 | 129 | 6 | -13.38 | -0.1284 |
MIMAT0005299 | rno-miR-181d | 309591 | Trim39 | uggguggcuguuguuaCUUACAa | |||||| | cauuccccuuuucagaGAAUGUa | 2 | 8 | 1017 | 1039 | [rn4:20:2105521-2105543:+] | 0.6510 | 120 | 6 | -13.83 | -0.1130 |
MIMAT0005307 | rno-miR-375 | 309591 | Trim39 | agugcgcucggcuugCUUGUUu | |||||| | guuggugaaaauaugGAACAAa | 2 | 8 | 1283 | 1304 | [rn4:20:2105787-2105808:+] | 0.6677 | 120 | 6 | -10.05 | -0.1424 |
MIMAT0005310 | rno-miR-384-3p | 309591 | Trim39 | uaacacuugUUAAAGA-UCCUUa | ||| ||| ||||| | ccuggcucaAAUGUCUAAGGAAa | 2 | 14 | 879 | 901 | [rn4:20:2105383-2105405:+] | 0.6766 | 121 | 0 | -9.74 | -0.4884 |
MIMAT0005335 | rno-miR-758 | 309591 | Trim39 | ccaaucaccUGGUCCAGUGUUu | |:: ||||||| | aggguacauAUUUUGUCACAAa | 2 | 14 | 1076 | 1097 | [rn4:20:2105580-2105601:+] | 0.6677 | 141 | 7 | -13.75 | -1.2295 |
MIMAT0005339 | rno-miR-873 | 309591 | Trim39 | uccucUGAGUGUUCAAGGACg | |:|| | :||||||| | ggguuAUUC-CUGGUUCCUGc | 2 | 17 | 666 | 685 | [rn4:20:2105170-2105189:+] | 0.5810 | 150 | 7 | -22.44 | -0.1030 |
MIMAT0005595 | rno-miR-146b | 309591 | Trim39 | ugucggaUACCUUAAGUCAA-GAGu | | || |||||||| ||| | ugcauugAGGGUAUUCAGUUCCUCc | 2 | 18 | 1180 | 1204 | [rn4:20:2105684-2105708:+] | 0.6677 | 133 | 0 | -17.51 | -0.8087 |