Trim39
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0000550rno-miR-323309591Trim39ucuccagcuggCACAUUACAc | ||||||| cucuuuucuuaGGGUAAUGUu211559579[rn4:20:2105063-2105083:+]0.62701427-7.26-0.7530
MIMAT0000554rno-miR-324-3p309591Trim39ggUCGUCGUGGACCCCGUCACc :| || |: | ||||||| guGGAAG-AUGAGUGGCAGUGg221407427[rn4:20:2104911-2104931:+]0.62701467-21.03-0.4859
MIMAT0000574rno-miR-140*309591Trim39ggCACCAAGAUGGGACACCAu ||| |: | ||||||| uuGUGCCUUGA--CUGUGGUu22012441262[rn4:20:2105748-2105766:+]0.66771447-17.71-0.7528
MIMAT0000576rno-miR-336309591Trim39ucuGA-UCUAUACC-UUCCCACu || :|| | || ||||||| gauCUGGGAGAAGGAAAGGGUGg219612634[rn4:20:2105116-2105138:+]0.62701527-20.97-0.5135
MIMAT0000585rno-miR-340-3p309591Trim39ccGAUAUUUCAUUGACU-CUGCCu :|| |||| : | || ||||| ugUUACAAAGGGCCAGAUGACGGc222962985[rn4:20:2105466-2105489:+]0.65101290-15.47-0.3120
MIMAT0000591rno-miR-343309591Trim39agacCCG-UGUGCCUC-CCUCu ||| || :|||| |||| ccaaGGCAACUUGGAGAGGAGu217781802[rn4:20:2105285-2105306:+]0.70221230-23.53-0.4723
MIMAT0000599rno-miR-349309591Trim39ucUCCAAUUCUGUCGUC-CCGAc | | |:|| ::|||| |||| ggAAGAUGAG-UGGCAGUGGCUg221409430[rn4:20:2104913-2104934:+]0.62701220-19.84-0.1942
MIMAT0000603rno-miR-20a*309591Trim39acAUU-CACGAGCAUUACGUCa ||| ||||: ||||||| cuUAAUUUGCUUAAAAUGCAGg220300321[rn4:20:2104804-2104825:+]0.62701587-13.67-0.6479
MIMAT0004717rno-miR-29b-2*309591Trim39gaUUCGGUGGUACACUUUGGUc :|||||:| || ||||||| uuGAGCCAUCUUGAGAAACCAc22198119[rn4:20:2104602-2104623:+]0.53961767-25.27-0.2142
MIMAT0004717rno-miR-29b-2*309591Trim39gaUUCGGUGGUACACUUUGGUc ||| | :: ||||||| aaAAGGCUUUUCCAGAAACCAa221262283[rn4:20:2104766-2104787:+]0.53961447-15.32-0.3685
MIMAT0000894rno-miR-291a-5p309591Trim39ucUCUCCCGGAGGUGAAACUAc | :||| :|: ||||||| gaACGGGGAUUU--CUUUGAUc221540559[rn4:20:2105044-2105063:+]0.62701497-12.77-0.7625
MIMAT0003115rno-miR-207309591Trim39uuccCUCC---UCUCGGUCCUCUUCg |||| ||| |::||||||| gccaGAGGUUCAGAUCUGGGAGAAGg220600625[rn4:20:2105104-2105129:+]0.62701627-24.65-0.3757
MIMAT0003115rno-miR-207309591Trim39uucccUCCUCUCGGUCC-UCUUCg | || ||| :|| ||||| accccACGACAGCAGGGUAGAAGa219928951[rn4:20:2105432-2105455:+]0.65101260-15.02-0.1817
MIMAT0003116rno-miR-501309591Trim39aaaguggguCCCUGUUUCCUAa || ||||||||| ugaaaauauGGAACAAAGGAUc21412881309[rn4:20:2105792-2105813:+]0.66771577-14.61-0.6975
MIMAT0003121rno-miR-483309591Trim39ugUUCUGCCCUCCCCUCCUCACu ::|| |: | ||||||| caGGGAAAAGGCUGAAGGAGUGu222498520[rn4:20:2105002-2105024:+]0.62701457-19.96-0.7830
MIMAT0003124rno-miR-412309591Trim39ugcCGAUCACCUGGUCCACUUca | || | : : |||||| caaGAUAAUUUGGUUGGUGAAaa32112711293[rn4:20:2105775-2105797:+]0.66771240-10.81-0.1787
MIMAT0004787rno-miR-543309591Trim39cgcuuuuugugcgcCCGUUGAa ||||||| uccauuguucccaaGGCAACUu29771792[rn4:20:2105275-2105296:+]0.70221407-14.35-0.8779
MIMAT0003175rno-miR-543*309591Trim39ucuucacguggcgCUUACAAa ||||||| cucuggccuuaaaGAAUGUUa29838858[rn4:20:2105342-2105362:+]0.70221407-8.59-1.1250
MIMAT0003175rno-miR-543*309591Trim39ucuucacguGGCGCUUACAaa | | |||||| uccccuuuuCAGAGAAUGUaa31310201040[rn4:20:2105524-2105544:+]0.65101240-5.54-0.1626
MIMAT0003209rno-miR-363*309591Trim39uuuAACGUAGCACUAGGUGGGc || |||| ||||||| uguUUCCAUC---CUCCACCCu2209941012[rn4:20:2105498-2105516:+]0.65101477-15.33-0.5460
MIMAT0003382rno-miR-664309591Trim39auCCGAC-CCCUCA--------UUUACUUAu ||||| ||||| |||||||| aaGGCUGAAGGAGUGUUUCUAGAAAUGAAUg221505535[rn4:20:2105009-2105039:+]0.62701467-25.09-0.5903
MIMAT0005278rno-miR-466b309591Trim39guaccuguAUG-UGUGUGUGUAu |:| | |||||||| agcgauucUGCAAGACACACAUc215742764[rn4:20:2105246-2105268:+]0.58101497-15.42-0.3061
MIMAT0005286rno-miR-878309591Trim39agauggGUCAUACCACAGUACg ||||: | ||||||| gaguggCAGUG-GCUGUCAUGa217416436[rn4:20:2104920-2104940:+]0.62701547-17.93-0.2187
MIMAT0005287rno-miR-879309591Trim39ccgAAUCUCGAUAUUCGGAGa | | :|| |||||||| agaUGACGGC--UAAGCCUCu219976994[rn4:20:2105480-2105498:+]0.65101477-15.34-0.4436
MIMAT0005288rno-miR-880309591Trim39agaugagUCUUACUUACCUCAu | :|| |||||||| agaagggAAGAU-AAUGGAGUc216901921[rn4:20:2105405-2105425:+]0.65101497-12.99-0.2400
MIMAT0005323rno-miR-532-3p309591Trim39acguucggaacccaCACCCUCc ||||||| cucccuccuaacuaGUGGGAGu29189210[rn4:20:2104693-2104714:+]0.53961407-16.14-0.1969
MIMAT0005327rno-miR-672309591Trim39aguguguGUCAUGUGGU-UGGAGu | ||||| || ||||| uagggauCUGUACA-CAUACCUCu217382404[rn4:20:2104886-2104908:+]0.62701220-18.04-0.1569
MIMAT0012823rno-miR-490309591Trim39guCGUACCUCAGG-----AGGUCCAAc |::|||| ||| |||||||| gaGUGUGGACUCCCAGGGUCCAGGUUu221207233[rn4:20:2104711-2104737:+]0.53961597-24.48-0.1888
MIMAT0012830rno-miR-504309591Trim39cuGUCUCACGUCUGGUCCCAGa ::|:||| ||: ||||||| auUGGGGUG-AGG-CAGGGUCa2211736[rn4:20:2104521-2104540:+]0.53731567-23.47-0.2791
MIMAT0000564rno-miR-328309591Trim39ugccuucCCGUCUCUCCCGGUc | :| | ||||||| gguuuguGUUACAAAGGGCCAg216956977[rn4:20:2105460-2105481:+]0.65101477-17.65-0.5065
MIMAT0000606rno-miR-7a309591Trim39uguugUUUUAGUG-AUCAGAAGGu ||:|| |: |||||||| aagggAAGAUAAUGGAGUCUUCCu219903926[rn4:20:2105407-2105430:+]0.65101577-16.50-0.2204
MIMAT0000780rno-miR-7b309591Trim39uguugUUUUAGUG-UUCAGAAGGu ||:|| |: :|||||||| aagggAAGAUAAUGGAGUCUUCCu219903926[rn4:20:2105407-2105430:+]0.65101617-16.36-0.2204
MIMAT0000804rno-miR-30c309591Trim39cgacUCUCACAUCCUACA-AAUGu |||| ||:| ||| |||| uagaAGAGGGUGGUUUGUGUUACa220945968[rn4:20:2105449-2105472:+]0.65101310-18.00-0.6914
MIMAT0000806rno-miR-30b-5p309591Trim39ucgaCUCACAUCCUACA-AAUGu ||| ||:| ||| |||| agaaGAGGGUGGUUUGUGUUACa219946968[rn4:20:2105450-2105472:+]0.65101260-15.76-0.6914
MIMAT0000818rno-miR-96309591Trim39ucguuUUUACACGAUCACG-GUUu |::| | ||||||| ||| gguccAGGUUUCCUAGUGCACAAg219223246[rn4:20:2104727-2104750:+]0.53961300-15.97-0.2768
MIMAT0000828rno-miR-124309591Trim39ccguaAGUGG-CGCACGGAAu |:||| :||||||| uccucUUACCUUUGUGCCUUg21612331253[rn4:20:2105737-2105757:+]0.66771507-19.41-0.8465
MIMAT0000842rno-miR-136309591Trim39agguaguagUUUUGUUUACCUCa ||:|: ||||||| aaagaagggAAGAU-AAUGGAGu215899920[rn4:20:2105403-2105424:+]0.65101487-12.97-0.4924
MIMAT0000852rno-miR-146a309591Trim39uugggUACCUUAAGUCAA-GAGu | || |||||||| ||| cauugAGGGUAUUCAGUUCCUCc21811821204[rn4:20:2105686-2105708:+]0.66771330-15.95-0.8087
MIMAT0000857rno-miR-181c309591Trim39ugaguggcuguccaaCUUACAa |||||| auuccccuuuucagaGAAUGUa2810181039[rn4:20:2105522-2105543:+]0.65101206-11.73-0.1130
MIMAT0000858rno-miR-181a309591Trim39ugaguggcugucgcaaCUUACAa |||||| cauuccccuuuucagaGAAUGUa2810171039[rn4:20:2105521-2105543:+]0.65101206-12.83-0.1130
MIMAT0000859rno-miR-181b309591Trim39uggguggcugucguuaCUUACAa |||||| cauuccccuuuucagaGAAUGUa2810171039[rn4:20:2105521-2105543:+]0.65101206-15.65-0.1130
MIMAT0000877rno-miR-204309591Trim39ucCGUAUCCUACUGUUUCC-CUu | :| |||| :||||| || agGAGUCAGAUGUUAAAGGAGAc221797819[rn4:20:2105301-2105323:+]0.70221240-15.44-0.6616
MIMAT0000878rno-miR-205309591Trim39gucugaggccacCUUACUUCCu ||||||||| guuucuagaaauGAAUGAAGGg211519540[rn4:20:2105023-2105044:+]0.62701507-16.66-0.7596
MIMAT0000879rno-miR-206309591Trim39gguGUGUGAAGGAAUGUAAGGu ||| ||| | ||||||| cucCACCCUU--UGACAUUCCc22010041023[rn4:20:2105508-2105527:+]0.65101567-18.57-0.4870
MIMAT0000880rno-miR-208309591Trim39uguucgaaaaacgagCAGAAUa |||||| agucuauuggaaaggGUCUUAa28283304[rn4:20:2104787-2104808:+]0.58331206-7.25-0.1235
MIMAT0000882rno-miR-211309591Trim39ucCGUUUCCUAC---UGUUUCC-CUu | |||||:|| | ||||| || aaGGAAAGGGUGGGAAGAAAGGAGAa221622647[rn4:20:2105126-2105151:+]0.62701270-23.73-0.2803
MIMAT0000882rno-miR-211309591Trim39uccguuucCUACUGUUUCC-CUu |||| :||||| || aggagucaGAUGUUAAAGGAGAc215797819[rn4:20:2105301-2105323:+]0.70221220-15.44-0.6653
MIMAT0000887rno-miR-217309591Trim39uaggucagucaaggaCUACGUCAu |||||||| ----------caagaGAUGCAGUu210114[rn4:20:2104505-2104518:+]0.61261457-12.67-0.1063
MIMAT0001543rno-miR-449a309591Trim39ugGUCGAUUGUUAUGU-GACGGu | || |: | ||| ||||| uuCUGCAAGACACACAUCUGCCc221747769[rn4:20:2105251-2105273:+]0.64161200-13.22-0.7814
MIMAT0001626rno-miR-431309591Trim39acguacugccGGACGUUCUGu :||||||||| uggaagcgauUCUGCAAGACa212738758[rn4:20:2105242-2105262:+]0.58101517-20.58-0.7235
MIMAT0003122rno-miR-370309591Trim39uugguccaaGGUGGGGUCGUCCg |||| ||||||| uuccucaccCCACGACAGCAGGg215922944[rn4:20:2105426-2105448:+]0.65101547-23.57-0.2755
MIMAT0003123rno-miR-377309591Trim39gguuUUCAACGGAAACACACUa ::| || ||||||||| cuguGGGAUG-GUUUGUGUGAa219125145[rn4:20:2104629-2104649:+]0.53961527-12.70-0.5714
MIMAT0003125rno-miR-1309591Trim39uauguGUGAAGAAAUGUAAGGu ||| :|| ||||||| uccucCACCCUUUGACAUUCCc21810021023[rn4:20:2105506-2105527:+]0.65101577-15.52-0.4870
MIMAT0003179rno-miR-542-3p309591Trim39aaAGUCAAU-AGUUAGACAGUGu | :| || :| |:|||||| caUAGGGUACAUAUUUUGUCACa22110731095[rn4:20:2105577-2105599:+]0.66771356-15.27-0.1610
MIMAT0003196rno-miR-376b-3p309591Trim39uucaccuacaaGGAGAUACUa |:||||||| ccuuuaaaaggCUUCUAUGAc211331351[rn4:20:2104835-2104855:+]0.62701467-11.76-0.6208
MIMAT0003381rno-miR-499309591Trim39uuUGUAG-UGACGU---UCAGAAUu | :|| |:|| | :|||||| ccAAGUCUAUUGGAAAGGGUCUUAa220280304[rn4:20:2104784-2104808:+]0.58331296-13.38-0.1284
MIMAT0005299rno-miR-181d309591Trim39uggguggcuguuguuaCUUACAa |||||| cauuccccuuuucagaGAAUGUa2810171039[rn4:20:2105521-2105543:+]0.65101206-13.83-0.1130
MIMAT0005307rno-miR-375309591Trim39agugcgcucggcuugCUUGUUu |||||| guuggugaaaauaugGAACAAa2812831304[rn4:20:2105787-2105808:+]0.66771206-10.05-0.1424
MIMAT0005310rno-miR-384-3p309591Trim39uaacacuugUUAAAGA-UCCUUa ||| ||| ||||| ccuggcucaAAUGUCUAAGGAAa214879901[rn4:20:2105383-2105405:+]0.67661210-9.74-0.4884
MIMAT0005335rno-miR-758309591Trim39ccaaucaccUGGUCCAGUGUUu |:: ||||||| aggguacauAUUUUGUCACAAa21410761097[rn4:20:2105580-2105601:+]0.66771417-13.75-1.2295
MIMAT0005339rno-miR-873309591Trim39uccucUGAGUGUUCAAGGACg |:|| | :||||||| ggguuAUUC-CUGGUUCCUGc217666685[rn4:20:2105170-2105189:+]0.58101507-22.44-0.1030
MIMAT0005595rno-miR-146b309591Trim39ugucggaUACCUUAAGUCAA-GAGu | || |||||||| ||| ugcauugAGGGUAUUCAGUUCCUCc21811801204[rn4:20:2105684-2105708:+]0.66771330-17.51-0.8087
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G056189Trim39Rattus norvegicus309591
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Trim39RAID00033515rno-miR-3064-3pmiRNAMIMAT0035738Trim39mRNA309591Prediction0.1828
Trim39RAID00163207rno-miR-1-3pmiRNAMIMAT0003125Trim39mRNA309591Prediction0.1828
Trim39RAID00205803rno-miR-146a-5pmiRNAMIMAT0000852Trim39mRNA309591Prediction0.1828
Trim39RAID00412417rno-miR-188-3pmiRNAMIMAT0017297Trim39mRNA309591Prediction0.1828
Trim39RAID00500661rno-miR-96-5pmiRNAMIMAT0000818Trim39mRNA309591Prediction0.2202
Trim39RAID00544215rno-miR-7bmiRNAMIMAT0000780Trim39mRNA309591Prediction0.1828
Trim39RAID00576633rno-miR-140-3pmiRNAMIMAT0000574Trim39mRNA309591Prediction0.1828
Trim39RAID00636067rno-miR-136-5pmiRNAMIMAT0000842Trim39mRNA309591Prediction0.1828
Trim39RAID00764408rno-miR-207miRNAMIMAT0003115Trim39mRNA309591Prediction0.1828
Trim39RAID00952433rno-miR-6319miRNAMIMAT0025056Trim39mRNA309591Prediction0.1828
Trim39RAID01095555rno-miR-873-5pmiRNAMIMAT0005339Trim39mRNA309591Prediction0.1828
Trim39RAID01481008rno-miR-1199-5pmiRNAMIMAT0031125Trim39mRNA309591Prediction0.1828
Trim39RAID01522187rno-miR-449a-5pmiRNAMIMAT0001543Trim39mRNA309591Prediction0.1828
Trim39RAID01697256rno-miR-542-3pmiRNAMIMAT0003179Trim39mRNA309591Prediction0.1828
Trim39RAID01799445rno-miR-30b-5pmiRNAMIMAT0000806Trim39mRNA309591Prediction0.1828
Trim39RAID01890204rno-miR-328a-3pmiRNAMIMAT0000564Trim39mRNA309591Prediction0.2202
Trim39RAID01930029rno-miR-375-3pmiRNAMIMAT0005307Trim39mRNA309591Prediction0.1828
Trim39RAID02016502rno-miR-181b-5pmiRNAMIMAT0000859Trim39mRNA309591Prediction0.1828
Trim39RAID02033997rno-miR-543-5pmiRNAMIMAT0004787Trim39mRNA309591Prediction0.1828
Trim39RAID02051708rno-miR-7a-5pmiRNAMIMAT0000606Trim39mRNA309591Prediction0.1828
Trim39RAID02073103rno-miR-328b-3pmiRNAMIMAT0017904Trim39mRNA309591Prediction0.1828
Trim39RAID02080381rno-miR-146b-5pmiRNAMIMAT0005595Trim39mRNA309591Prediction0.1828
Trim39RAID02099011rno-miR-124-3pmiRNAMIMAT0000828Trim39mRNA309591Prediction0.2381
Trim39RAID02113861rno-miR-217-5pmiRNAMIMAT0000887Trim39mRNA309591Prediction0.1828
Trim39RAID02214083rno-miR-384-3pmiRNAMIMAT0005310Trim39mRNA309591Prediction0.1828
Trim39RAID02455051rno-miR-30c-5pmiRNAMIMAT0000804Trim39mRNA309591Prediction0.1828
Trim39RAID02519111rno-miR-208a-3pmiRNAMIMAT0000880Trim39mRNA309591Prediction0.1828
Trim39RAID02576129rno-miR-3549miRNAMIMAT0017807Trim39mRNA309591Prediction0.1828
Trim39RAID02634814rno-miR-499-5pmiRNAMIMAT0003381Trim39mRNA309591Prediction0.1828
Trim39RAID02655261rno-miR-181c-5pmiRNAMIMAT0000857Trim39mRNA309591Prediction0.1828
Trim39RAID02855551rno-miR-431miRNAMIMAT0001626Trim39mRNA309591Prediction0.2202
Trim39RAID02963601rno-miR-205miRNAMIMAT0000878Trim39mRNA309591Prediction0.1828
Trim39RAID03072229rno-miR-181a-5pmiRNAMIMAT0000858Trim39mRNA309591Prediction0.1828
Trim39RAID03242411rno-miR-182miRNAMIMAT0005300Trim39mRNA309591Prediction0.1828
Trim39RAID03368418rno-miR-376b-3pmiRNAMIMAT0003196Trim39mRNA309591Prediction0.1828
Trim39RAID03431027rno-miR-758-3pmiRNAMIMAT0005335Trim39mRNA309591Prediction0.2202
Trim39RAID03478302rno-miR-370-3pmiRNAMIMAT0003122Trim39mRNA309591Prediction0.1828
Trim39RAID03517362rno-miR-543-3pmiRNAMIMAT0003175Trim39mRNA309591Prediction0.1828
Trim39RAID03568887rno-miR-377-3pmiRNAMIMAT0003123Trim39mRNA309591Prediction0.1828
Trim39RAID03682541rno-miR-204-5pmiRNAMIMAT0000877Trim39mRNA309591Prediction0.1828
Trim39RAID03790127rno-miR-211-5pmiRNAMIMAT0000882Trim39mRNA309591Prediction0.1828
Trim39RAID03916933rno-miR-206-3pmiRNAMIMAT0000879Trim39mRNA309591Prediction0.1828
Trim39RAID04064069rno-miR-181d-5pmiRNAMIMAT0005299Trim39mRNA309591Prediction0.1828