DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004639 rno-miR-325-3p 363869 Ubl3 aacuauccuccacgAGUUAUUu ||||||| accaguauuccauaUCAAUAAc 2 9 1205 1226 [rn4:12:7063469-7063490:+] 0.6811 140 7 -4.01 -1.0536 MIMAT0004639 rno-miR-325-3p 363869 Ubl3 aacUAUCCUCCACGAGUUAUUu :||| | :|:||||| uguGUAGAUUAUAUUUAAUAAa 2 20 1123 1144 [rn4:12:7063387-7063408:+] 0.6804 131 0 -7.46 -0.1289 MIMAT0004639 rno-miR-325-3p 363869 Ubl3 aacuauccuccacgaGUUAUUu |||||| cacucuuauuuuuacCAAUAAu 2 8 968 989 [rn4:12:7063232-7063253:+] 0.6443 120 6 -3.68 -0.2170 MIMAT0000570 rno-miR-331 363869 Ubl3 aagauccUAUCCG-GGUCCCCg :|:| | ||||||| augcacaGUGGUCUCCAGGGGa 2 15 212 233 [rn4:12:7062476-7062497:+] 0.6120 145 7 -20.40 -0.9393 MIMAT0004646 rno-miR-338* 363869 Ubl3 gugagucGUGGUCCUAUAACAa :|| | ||||||| guagaucUACGAAAAUAUUGUu 2 16 1401 1422 [rn4:12:7063665-7063686:+] 0.6811 147 7 -9.54 -1.0394 MIMAT0004654 rno-miR-344-5p 363869 Ubl3 ggacCUUAGAUCGGUCCUCG-GACu ||| | | :|| |||| ||| gacuGAA-CCACUCAUGAGCUCUGu 2 21 99 122 [rn4:12:7062363-7062386:+] 0.6120 122 0 -14.67 -0.2287 MIMAT0000603 rno-miR-20a* 363869 Ubl3 acAUUCACGAGCAUUACGUca ||| || | | |||||| ucUAACUG-UAG-AAUGCAaa 3 20 1162 1180 [rn4:12:7063426-7063444:+] 0.6455 131 0 -6.04 -0.1370 MIMAT0004705 rno-let-7b* 363869 Ubl3 cccuuccgucauccAACAUAUc ||||||| gaucagaauuaaauUUGUAUAg 2 9 1429 1450 [rn4:12:7063693-7063714:+] 0.6811 140 7 -10.00 -1.0704 MIMAT0003152 rno-miR-22* 363869 Ubl3 auuucgaacggugacUUCUUGa |||||| aaaguaaaaagaaccAAGAACa 2 8 136 157 [rn4:12:7062400-7062421:+] 0.6120 120 6 -8.51 -0.1151 MIMAT0004718 rno-miR-29a* 363869 Ubl3 gacuuguGGUUUUCUUUAGUCa ::||| | |||||| ucuuuguUUAAAUGCAAUCAGg 2 16 1333 1354 [rn4:12:7063597-7063618:+] 0.6811 127 6 -8.80 -0.1158 MIMAT0004726 rno-miR-101a* 363869 Ubl3 cguagucgugacacuAUUGACu |||||| acauaauaaaauaucUAACUGu 2 8 1149 1170 [rn4:12:7063413-7063434:+] 0.6455 120 6 -9.22 -0.1626 MIMAT0000831 rno-miR-126* 363869 Ubl3 gcgcaUGGUUUUCAUUAUUac |::| | |||||| uguagAUUAUAUUUAAUAAaa 3 17 1125 1145 [rn4:12:7063389-7063409:+] 0.6804 128 0 -3.38 -0.4198 MIMAT0000831 rno-miR-126* 363869 Ubl3 gcgcauggUUUUC---AUUAUUac ||||| |||||| uuuaauaaAAAAGACAUAAUAAaa 3 14 1136 1159 [rn4:12:7063400-7063423:+] 0.6099 128 0 -3.14 -0.2153 MIMAT0000831 rno-miR-126* 363869 Ubl3 gcgcaugguuuucaUUAUUAc |||||| cucuuauuuuuaccAAUAAUu 2 8 970 990 [rn4:12:7063234-7063254:+] 0.6892 120 6 -4.62 -0.1377 MIMAT0000847 rno-miR-142-5p 363869 Ubl3 ucaucacgaaaGAUGAAAUAc :|||||||| augcaaucaggUUACUUUAUu 2 11 1344 1364 [rn4:12:7063608-7063628:+] 0.6811 146 7 -8.31 -1.0372 MIMAT0000847 rno-miR-142-5p 363869 Ubl3 ucaucacgaaagaUGAAAUAc ||||||| uuccauaucaauaACUUUAUc 2 9 1212 1232 [rn4:12:7063476-7063496:+] 0.6811 140 7 -5.61 -0.9418 MIMAT0000901 rno-miR-299 363869 Ubl3 uacauacacccuGCCAUUUGGu | ||||||: aauagauuucuuCUGUAAACUa 2 11 1511 1532 [rn4:12:7063775-7063796:+] 0.6811 126 0 -7.18 -0.4090 MIMAT0000901 rno-miR-299 363869 Ubl3 uacauacacccugccAUUUGGu |||||| ugagcuaauuucaucUAAACCu 2 8 1038 1059 [rn4:12:7063302-7063323:+] 0.6892 120 6 -4.90 -0.2043 MIMAT0000901 rno-miR-299 363869 Ubl3 uacauacacccugccAUUUGGu |||||| gaauguaaauagcacUAAACCu 2 8 1467 1488 [rn4:12:7063731-7063752:+] 0.6811 120 6 -7.66 -0.1193 MIMAT0003162 rno-miR-1* 363869 Ubl3 ccCAUGUAUU--UCUUCAUACACg | |:: || | || |||||| cuGGAUGAAAUUACAAAUAUGUGu 2 21 1104 1127 [rn4:12:7063368-7063391:+] 0.7510 123 6 -7.66 -0.1914 MIMAT0003175 rno-miR-543* 363869 Ubl3 ucUUCACGUGGCGCUUACAaa |: | :| :|||||| agAGUUUUAAAAUGAAUGUaa 3 20 1454 1474 [rn4:12:7063718-7063738:+] 0.6811 123 0 -8.52 -0.2630 MIMAT0003197 rno-miR-376a* 363869 Ubl3 gaGUAU-CUUCCUCUUAGAUGg :||| | || | :|||||| uuUAUAUGCAGUA-GAUCUACg 2 20 1391 1411 [rn4:12:7063655-7063675:+] 0.6811 136 6 -11.71 -0.1504 MIMAT0003197 rno-miR-376a* 363869 Ubl3 gaGUAUCUUCCUCUU-AGAUGg |||: :|| ||| ||||| aaCAUGCUGGGUGAAUUCUACc 2 20 483 504 [rn4:12:7062747-7062768:+] 0.5678 127 0 -20.24 -0.2813 MIMAT0003198 rno-miR-376a 363869 Ubl3 ugcaccuaaaaggAGAUGCUa ||||||| uauaugcaguagaUCUACGAa 2 9 1393 1413 [rn4:12:7063657-7063677:+] 0.6811 140 7 -10.53 -1.2164 MIMAT0003380 rno-miR-505 363869 Ubl3 ccuuuGGUCGUUCACAACUg |: |: ||||||| uaucuCUUGUCUGUGUUGAg 2 16 183 202 [rn4:12:7062447-7062466:+] 0.6120 143 7 -10.43 -0.2784 MIMAT0003382 rno-miR-664 363869 Ubl3 aucCGACCCCUCA-UUUACUUAu || | | | |||||||| agaGCAGAGUUUUAAAAUGAAUg 2 20 1449 1471 [rn4:12:7063713-7063735:+] 0.6811 146 7 -11.54 -1.1757 MIMAT0005290 rno-miR-883 363869 Ubl3 uaugacucucuacaACGUCAAu ||||||| acgcccaucaucagUGCAGUUa 2 9 422 443 [rn4:12:7062686-7062707:+] 0.5678 140 7 -10.27 -0.3201 MIMAT0005318 rno-miR-471 363869 Ubl3 caCU-UUUCGUGAUAUGAUGCAu || :|||: | ||||||| aaGAUGAAGUUGCAGACUACGUu 2 21 1244 1266 [rn4:12:7063508-7063530:+] 0.6811 151 7 -17.12 -0.5214 MIMAT0005321 rno-miR-500 363869 Ubl3 acUUGGGAACGGGUCCAC-GUAa ::|| ||:|: |||| ||| ggGGCCAGUGUCUCGGUGCCAUc 2 21 704 726 [rn4:12:7062968-7062990:+] 0.5934 124 0 -23.51 -0.1207 MIMAT0005322 rno-miR-532-5p 363869 Ubl3 ugUCAGGAUGUGAGUUCCGUAc || |: | :|:||||||| caAG-CUGAGUUUUAAGGCAUa 2 21 932 952 [rn4:12:7063196-7063216:+] 0.5964 150 7 -15.76 -1.1345 MIMAT0005329 rno-miR-674-5p 363869 Ubl3 auguggUGAGGGUAG-AGUCACg || |||||| |||||| uggaggACGCCCAUCAUCAGUGc 2 17 416 438 [rn4:12:7062680-7062702:+] 0.5678 136 6 -25.34 -0.1836 MIMAT0005333 rno-miR-742 363869 Ubl3 aaauggguuguaccaCCGAAAg |||||| augcuuccaugagaaGGCUUUa 2 8 1373 1394 [rn4:12:7063637-7063658:+] 0.6811 120 6 -13.19 -0.1297 MIMAT0005342 rno-miR-652 363869 Ubl3 guguugggaUCACCGCGGUaa | | |||||| uacaugaucAAUAGCGCCAcu 3 13 951 971 [rn4:12:7063215-7063235:+] 0.6443 124 0 -15.28 -0.1059 MIMAT0012823 rno-miR-490 363869 Ubl3 gucguaccucaggaGGUCCAAc :|||||| uuguuuaaaugcaaUCAGGUUa 2 9 1336 1357 [rn4:12:7063600-7063621:+] 0.6811 124 6 -10.37 -0.1438 MIMAT0012825 rno-miR-105 363869 Ubl3 uggugucuguagacUCGUGAac |||||| aaaugaauguaaauAGCACUaa 3 9 1463 1484 [rn4:12:7063727-7063748:+] 0.6811 120 0 -7.96 -0.1692 MIMAT0012831 rno-miR-544 363869 Ubl3 cucgaacgauuuuuACGUCUUa ||||||| cucaagucucucucUGCAGAAa 2 9 246 267 [rn4:12:7062510-7062531:+] 0.6120 140 7 -8.18 -0.3293 MIMAT0012833 rno-miR-582 363869 Ubl3 ucauugaccaacuuGUUGACAu :|||||| cauaauaaaauaucUAACUGUa 2 9 1150 1171 [rn4:12:7063414-7063435:+] 0.6455 124 6 -8.47 -0.1619 MIMAT0012841 rno-miR-675 363869 Ubl3 ugacACCCGGGAAAGGC-GUGGu | ||| ||||| |||| agacUCGGCAGCUUCCGACACCu 2 19 52 74 [rn4:12:7062316-7062338:+] 0.6120 122 0 -19.80 -0.1067 MIMAT0012844 rno-miR-665 363869 Ubl3 ucCCUGGAGUCGGAGGACCa ||| | |:|||||| ugGGAAGAAAUCUUCCUGGa 2 19 1089 1108 [rn4:12:7063353-7063372:+] 0.7510 134 6 -21.08 -0.2852 MIMAT0012845 rno-miR-935 363869 Ubl3 cgccaucgccuucgccAUUGACc |||||| gacauaauaaaauaucUAACUGu 2 8 1148 1170 [rn4:12:7063412-7063434:+] 0.6455 120 6 -4.44 -0.1626 MIMAT0012850 rno-miR-465 363869 Ubl3 guGUGGUCG-UGGCA--AGAUUUau ||: ||| | : | |||||| agCAUGAGCUAAUUUCAUCUAAAcc 3 21 1034 1058 [rn4:12:7063298-7063322:+] 0.6892 126 0 -10.17 -0.1259 MIMAT0012850 rno-miR-465 363869 Ubl3 guguggucguggcaaGAUUUAu |||||| gauuucuucuguaaaCUAAAUa 2 8 1515 1536 [rn4:12:7063779-7063800:+] 0.6811 120 6 -8.82 -0.3873 MIMAT0000552 rno-miR-301a 363869 Ubl3 cgaaACUGUUAUGAU-AACGUGAc || |:| | | ||||||| gugcUGCAAGUUCAAUUUGCACUa 2 20 313 336 [rn4:12:7062577-7062600:+] 0.5678 150 7 -11.44 -1.0980 MIMAT0000573 rno-miR-140 363869 Ubl3 gaugGUA--UCCCAUUUUGGUGAc ||| || | :||||||| cgcaCAUCCAGACU-GAACCACUc 2 19 89 111 [rn4:12:7062353-7062375:+] 0.6120 143 7 -12.71 -0.2386 MIMAT0000579 rno-miR-148b-3p 363869 Ubl3 uguUUCAAGACACUACGUGAcu |||||| | |||||| ugcAAGUUCAAU-UUGCACUaa 3 20 317 337 [rn4:12:7062581-7062601:+] 0.5678 137 0 -13.08 -0.1013 MIMAT0000581 rno-miR-338 363869 Ubl3 agUUGUUUUAGUGACUACGACCu :| ::|||| ||||||| ggGAAGGAAUCUAACAUGCUGGg 2 22 471 493 [rn4:12:7062735-7062757:+] 0.5678 153 7 -16.73 -0.1671 MIMAT0004650 rno-miR-340-5p 363869 Ubl3 uuagucagaguaaCGAAAUAUu |||||||| cuuccaugagaagGCUUUAUAu 2 10 1376 1397 [rn4:12:7063640-7063661:+] 0.6811 145 7 -8.83 -0.4238 MIMAT0004650 rno-miR-340-5p 363869 Ubl3 uuaGUCAGAGUAACGAAAUAuu || || :|| |||||| augCAAUCAGGUUACUUUAUuc 3 20 1344 1365 [rn4:12:7063608-7063629:+] 0.6811 139 0 -9.32 -0.1213 MIMAT0004650 rno-miR-340-5p 363869 Ubl3 uuagucagaguaacGAAAUAUu :|||||| cuguaaaaaaaagaUUUUAUAu 2 9 1058 1079 [rn4:12:7063322-7063343:+] 0.7201 124 6 -2.76 -0.2064 MIMAT0000589 rno-miR-342-3p 363869 Ubl3 ugcccacgcuAAAGACAC-ACUCu | |||||| |||| cuguaucucuUGUCUGUGUUGAGc 2 14 180 203 [rn4:12:7062444-7062467:+] 0.6120 121 0 -14.19 -0.3617 MIMAT0000611 rno-miR-135b 363869 Ubl3 aguGUAU-CCUUA-CUUUUCGGUAu :||| ||| ||||| ||| gauUAUAUUUAAUAAAAAAGACAUa 2 21 1129 1153 [rn4:12:7063393-7063417:+] 0.6804 122 0 -8.95 -0.2099 MIMAT0000781 rno-miR-9 363869 Ubl3 agUAUG-UCGAUCUA--UUGGUUUCu ||:| :| |: || ||||||| acAUGCUGGGUGAAUUCUACCAAAGu 2 22 484 509 [rn4:12:7062748-7062773:+] 0.5678 147 7 -20.28 -0.2907 MIMAT0000788 rno-miR-19b 363869 Ubl3 agUCAAAACGU---ACCUAAACGUGu ||| |||| | |||||||| cgAGUGCUGCAAGUUCAAUUUGCACu 2 22 310 335 [rn4:12:7062574-7062599:+] 0.5678 156 7 -15.89 -0.9598 MIMAT0000788 rno-miR-19b 363869 Ubl3 agucaaaacguaccUAAACGUGu |||||||| gcuauaaauaaacaAUUUGCACa 2 10 1004 1026 [rn4:12:7063268-7063290:+] 0.6892 145 7 -11.09 -1.2193 MIMAT0000789 rno-miR-19a 363869 Ubl3 agUCAAAACGU---AUCUAAACGUGu ||| |||| | |||||||| cgAGUGCUGCAAGUUCAAUUUGCACu 2 22 310 335 [rn4:12:7062574-7062599:+] 0.5678 156 7 -16.47 -0.9598 MIMAT0000789 rno-miR-19a 363869 Ubl3 agucaaaacguaucUAAACGUGu |||||||| gcuauaaauaaacaAUUUGCACa 2 10 1004 1026 [rn4:12:7063268-7063290:+] 0.6892 145 7 -11.09 -1.2193 MIMAT0000796 rno-miR-26a 363869 Ubl3 ucGGA-UAG-GACCUAAUGAACUu ||| | | | | ||||||| agCCUCAGCGGUUGUGUACUUGAg 2 21 747 770 [rn4:12:7063011-7063034:+] 0.5934 142 7 -17.89 -0.1352 MIMAT0000797 rno-miR-26b 363869 Ubl3 uggauaggacuuaAUGAACUu ||||||| cucagcgguugugUACUUGAg 2 9 750 770 [rn4:12:7063014-7063034:+] 0.5934 140 7 -11.95 -0.1352 MIMAT0000812 rno-miR-33 363869 Ubl3 acguUACGUUG--AUGUUACGUg || :||| || |||||| aaauAUCUAACUGUAGAAUGCAa 2 18 1157 1179 [rn4:12:7063421-7063443:+] 0.6455 128 6 -11.04 -0.2664 MIMAT0000812 rno-miR-33 363869 Ubl3 acguuacguugaugUUACGUg |||||| gucaucuuuguuuaAAUGCAa 2 8 1329 1349 [rn4:12:7063593-7063613:+] 0.6811 120 6 -7.23 -0.1874 MIMAT0000829 rno-miR-125a-5p 363869 Ubl3 aguguccaauUUCCCAGA-GUCCCu |: ||||| ||||| ugaaaugcacAGUGGUCUCCAGGGg 2 15 208 232 [rn4:12:7062472-7062496:+] 0.6120 122 0 -25.31 -0.5238 MIMAT0000830 rno-miR-125b-5p 363869 Ubl3 aguguucaaUC-CCAGA-GUCCCu || ||||| ||||| gaaaugcacAGUGGUCUCCAGGGg 2 14 209 232 [rn4:12:7062473-7062496:+] 0.6120 120 0 -25.12 -0.5168 MIMAT0000836 rno-miR-130a 363869 Ubl3 uaCGGGAAAAUUGUAACGUGAc || || ||: ||||||| cuGCAAGUUCAAU-UUGCACUa 2 21 316 336 [rn4:12:7062580-7062600:+] 0.5678 150 7 -11.04 -1.0818 MIMAT0000837 rno-miR-130b 363869 Ubl3 uaCGGGAAAGUAGUAACGUGAc || |||| : ||||||| cuGCAAGUUCAAU-UUGCACUa 2 21 316 336 [rn4:12:7062580-7062600:+] 0.5678 150 7 -14.59 -1.0768 MIMAT0000841 rno-miR-135a 363869 Ubl3 aguGUAU-CCUUA-UUUUUCGGUAu :||| ||| |||||| ||| gauUAUAUUUAAUAAAAAAGACAUa 2 21 1129 1153 [rn4:12:7063393-7063417:+] 0.6804 130 0 -10.52 -0.2099 MIMAT0000845 rno-miR-139-5p 363869 Ubl3 gaccUCUGUGCACGUGACAUCu | |:|: | ||||||| aauaAAAUAUCU-AACUGUAGa 2 19 1153 1173 [rn4:12:7063417-7063437:+] 0.6455 144 7 -12.35 -1.2778 MIMAT0000849 rno-miR-143 363869 Ubl3 acUCGAUGUCACGAAGUAGAgu ||||| | :||||||| ugAGCUA-A---UUUCAUCUaa 3 21 1038 1055 [rn4:12:7063302-7063319:+] 0.6892 130 0 -17.68 -0.1639 MIMAT0000857 rno-miR-181c 363869 Ubl3 ugaguggcuguccaACUUACAa ||||||| gcagaguuuuaaaaUGAAUGUa 2 9 1452 1473 [rn4:12:7063716-7063737:+] 0.6811 140 7 -9.45 -1.3044 MIMAT0000858 rno-miR-181a 363869 Ubl3 ugaguggcugucgcaACUUACAa ||||||| agcagaguuuuaaaaUGAAUGUa 2 9 1451 1473 [rn4:12:7063715-7063737:+] 0.6811 140 7 -9.76 -1.3051 MIMAT0000859 rno-miR-181b 363869 Ubl3 uggguggcugucgUUACUUACAa ||||||||| agcagaguuuuaaAAUGAAUGUa 2 11 1451 1473 [rn4:12:7063715-7063737:+] 0.6811 150 7 -11.80 -1.3051 MIMAT0000862 rno-miR-185 363869 Ubl3 agUCCUUGACGGA-AAGAGAGGu | ||:|| : | ||||||| ucAUGAGCUCUGUGAUCUCUCCu 2 21 110 132 [rn4:12:7062374-7062396:+] 0.6120 151 7 -19.23 -0.5709 MIMAT0000865 rno-miR-190 363869 Ubl3 uggauuauauaguuuGUAUAGu |||||| uauagaccaguauucCAUAUCa 2 8 1200 1221 [rn4:12:7063464-7063485:+] 0.6811 120 6 -13.13 -0.3283 MIMAT0000868 rno-miR-193 363869 Ubl3 ugacccugaaacaUCCGGUCAa |||||||| ugcaguuaauaccAGGCCAGUu 2 10 436 457 [rn4:12:7062700-7062721:+] 0.5678 145 7 -15.46 -0.3035 MIMAT0000872 rno-miR-199a-5p 363869 Ubl3 cuuguccaucagacuuGUGACCc |||||| gauuuuauauuuuuuuCACUGGg 2 8 1070 1092 [rn4:12:7063334-7063356:+] 0.7510 120 6 -16.07 -0.1903 MIMAT0000873 rno-miR-200c 363869 Ubl3 ggUAGUA-AUGGGCCGUCAUAAu | ||| || | ||||||| guAGCAUAUAGAC--CAGUAUUc 2 21 1194 1214 [rn4:12:7063458-7063478:+] 0.6811 144 7 -9.02 -0.5124 MIMAT0000875 rno-miR-200b 363869 Ubl3 caGUAGUAAUGGUCCGUCAUAAu :| || ||: : ||||||| ugUAGCA-UAUAGACCAGUAUUc 2 22 1193 1214 [rn4:12:7063457-7063478:+] 0.6811 147 7 -11.10 -0.5397 MIMAT0000886 rno-miR-216a 363869 Ubl3 agUGUCAACGGUC-GACUCUAau |:| || || :|||||| caAUAAUUUAAAGAUUGAGAUgc 3 21 983 1005 [rn4:12:7063247-7063269:+] 0.6892 131 0 -7.99 -0.2257 MIMAT0000887 rno-miR-217 363869 Ubl3 uaggUCAGUCAAGGACUACGUCAu || :| |:: ||||||| caugAGAAGGCUUUAUAUGCAGUa 2 21 1380 1403 [rn4:12:7063644-7063667:+] 0.6811 148 7 -15.40 -1.1551 MIMAT0000895 rno-miR-291a-3p 363869 Ubl3 ccgUGUGUUU-CACCU-UCGUGAaa | |::|| || | |||||| uuaAAAUGAAUGUAAAUAGCACUaa 3 21 1460 1484 [rn4:12:7063724-7063748:+] 0.6811 130 0 -8.71 -0.1660 MIMAT0001534 rno-miR-448 363869 Ubl3 uaCCCUGUAGGAUGUAUACGUu | || | || :||||||| auGAGA-AGGCUUUAUAUGCAg 2 21 1381 1401 [rn4:12:7063645-7063665:+] 0.6811 150 7 -14.66 -0.9156 MIMAT0001538 rno-miR-429 363869 Ubl3 ugcCGUAAUGGUCU-GUCAUAAu ||| || :||| ||||||| guaGCA-UA-UAGACCAGUAUUc 2 20 1194 1214 [rn4:12:7063458-7063478:+] 0.6811 154 7 -15.46 -0.5397 MIMAT0003114 rno-miR-383 363869 Ubl3 ucgGUGUCAGUGGAAGACUAGa :|: ||: | | |||||| aaaUAUUGUU-CAUACUGAUCa 2 20 1413 1433 [rn4:12:7063677-7063697:+] 0.6811 121 6 -10.75 -0.1868 MIMAT0003176 rno-miR-539 363869 Ubl3 ugUGUGGUUC-CUAUUAAAG-AGg | | || | | ||||||| || cuAAAGCAUGAGCUAAUUUCAUCu 2 21 1030 1053 [rn4:12:7063294-7063317:+] 0.6892 123 0 -9.32 -1.0902 MIMAT0003199 rno-miR-381 363869 Ubl3 cucucgAACGGGAACAUAu || :|||||| ucagaaUUAAAUUUGUAUa 2 14 1431 1449 [rn4:12:7063695-7063713:+] 0.6811 125 6 -9.31 -0.1397 MIMAT0003203 rno-miR-485 363869 Ubl3 cuuaaGUAGUGCCGGUCGGAGa | |:|: |||||||: aauaaCUUUAU--CCAGCCUUu 2 18 1221 1240 [rn4:12:7063485-7063504:+] 0.6811 130 0 -15.66 -0.1118 MIMAT0003208 rno-miR-374 363869 Ubl3 gugaaucguccaacaUAAUAUa |||||| uacaaauauguguagAUUAUAu 2 8 1115 1136 [rn4:12:7063379-7063400:+] 0.6804 120 6 -5.91 -0.2572 MIMAT0005299 rno-miR-181d 363869 Ubl3 uggguggcuguUGUUACUUACAa | ||||||||| agcagaguuuuAAAAUGAAUGUa 2 13 1451 1473 [rn4:12:7063715-7063737:+] 0.6811 152 7 -11.38 -1.3044 MIMAT0005302 rno-miR-190b 363869 Ubl3 uuggauuauaguuuGUAUAGu |||||| auagaccaguauucCAUAUCa 2 8 1201 1221 [rn4:12:7063465-7063485:+] 0.6811 120 6 -14.87 -0.3229 MIMAT0005304 rno-miR-301b 363869 Ubl3 cgaaACUGUUAUGGU-AACGUGAc || |:| | | ||||||| gugcUGCAAGUUCAAUUUGCACUa 2 20 313 336 [rn4:12:7062577-7062600:+] 0.5678 150 7 -12.75 -1.0980 MIMAT0005311 rno-miR-410 363869 Ubl3 uguccgguagacacAAUAUAa |||||| guaaaaaaaagauuUUAUAUu 2 8 1060 1080 [rn4:12:7063324-7063344:+] 0.7201 120 6 -4.65 -0.1889 MIMAT0005311 rno-miR-410 363869 Ubl3 uguccgguagacacAAUAUAa |||||| caaauauguguagaUUAUAUu 2 8 1117 1137 [rn4:12:7063381-7063401:+] 0.6804 120 6 -8.14 -0.1485 MIMAT0005320 rno-miR-495 363869 Ubl3 uuCUUC-ACG--UGGUACAA-ACAAa |||| ||| ||:| ||| |||| auGAAGUUGCAGACUACGUUGUGUUc 2 21 1247 1272 [rn4:12:7063511-7063536:+] 0.6811 130 0 -12.28 -0.5879 MIMAT0005339 rno-miR-873 363869 Ubl3 uccucugaguguucAAGGACg |||||| acugggaagaaaucUUCCUGg 2 8 1087 1107 [rn4:12:7063351-7063371:+] 0.7510 120 6 -17.62 -0.1410

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G091745 Ubl3 Rattus norvegicus 363869

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubl3 RAID00022481 rno-miR-1912-3p miRNA MIMAT0017865 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00033100 rno-let-7c-2-3p miRNA MIMAT0017088 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID00047241 rno-miR-485-5p miRNA MIMAT0003203 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00059360 rno-miR-98-3p miRNA MIMAT0017111 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID00241468 rno-miR-3596d miRNA MIMAT0017823 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID00253910 rno-miR-181d-5p miRNA MIMAT0005299 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID00258008 rno-miR-217-5p miRNA MIMAT0000887 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID00319980 rno-miR-325-3p miRNA MIMAT0004639 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00336786 rno-miR-465-3p miRNA MIMAT0017367 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00434991 rno-miR-291a-3p miRNA MIMAT0000895 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00447343 rno-miR-190b-5p miRNA MIMAT0005302 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00513739 rno-miR-301b-3p miRNA MIMAT0005304 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID00533401 rno-miR-295-3p miRNA MIMAT0017366 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00602646 rno-miR-511-5p miRNA MIMAT0012829 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00630741 rno-miR-125b-5p miRNA MIMAT0000830 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00776578 rno-miR-338-5p miRNA MIMAT0004646 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00800341 rno-miR-135a-5p miRNA MIMAT0000841 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00885986 rno-miR-342-3p miRNA MIMAT0000589 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00890524 rno-miR-374-5p miRNA MIMAT0003208 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID00935549 rno-miR-9a-5p miRNA MIMAT0000781 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID00954887 rno-miR-532-5p miRNA MIMAT0005322 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01034496 rno-miR-3596c miRNA MIMAT0017877 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01075107 rno-miR-19b-3p miRNA MIMAT0000788 Ubl3 mRNA 363869 Prediction 0.2381 Ubl3 RAID01095671 rno-miR-125a-5p miRNA MIMAT0000829 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01097713 rno-miR-1193-5p miRNA MIMAT0017858 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01098555 rno-miR-539-5p miRNA MIMAT0003176 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01251769 rno-miR-185-5p miRNA MIMAT0000862 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01294846 rno-let-7f-1-3p miRNA MIMAT0017089 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID01573470 rno-miR-148b-3p miRNA MIMAT0000579 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01668610 rno-miR-410-3p miRNA MIMAT0005311 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01728655 rno-let-7a-1-3p miRNA MIMAT0017085 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID01742858 rno-miR-675-3p miRNA MIMAT0017363 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01851058 rno-miR-338-3p miRNA MIMAT0000581 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01892223 rno-miR-363-3p miRNA MIMAT0003210 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01909842 rno-miR-3577 miRNA MIMAT0017863 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01926051 rno-miR-155-5p miRNA MIMAT0030409 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01936913 rno-miR-193a-3p miRNA MIMAT0000868 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01940672 rno-miR-181a-5p miRNA MIMAT0000858 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID01942112 rno-miR-544-3p miRNA MIMAT0012831 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID01955463 rno-miR-153-5p miRNA MIMAT0017135 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02149666 rno-miR-181c-5p miRNA MIMAT0000857 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID02150511 rno-miR-495 miRNA MIMAT0005320 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02193759 rno-miR-26a-5p miRNA MIMAT0000796 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02263886 rno-miR-181b-5p miRNA MIMAT0000859 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID02280237 rno-miR-6333 miRNA MIMAT0025074 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02342959 rno-miR-320-5p miRNA MIMAT0017168 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02401407 rno-miR-331-3p miRNA MIMAT0000570 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02402159 rno-miR-448-3p miRNA MIMAT0001534 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID02403901 rno-miR-3548 miRNA MIMAT0017806 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02521813 rno-miR-26b-5p miRNA MIMAT0000797 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02540146 rno-miR-195-3p miRNA MIMAT0017149 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02577444 rno-miR-199a-5p miRNA MIMAT0000872 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02699438 rno-miR-135b-5p miRNA MIMAT0000611 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02817188 rno-miR-33-3p miRNA MIMAT0017104 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02832176 rno-miR-190a-5p miRNA MIMAT0000865 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02832837 rno-miR-143-3p miRNA MIMAT0000849 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02909677 rno-miR-3561-3p miRNA MIMAT0017831 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02937330 rno-miR-505-3p miRNA MIMAT0003380 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02941372 rno-miR-130a-3p miRNA MIMAT0000836 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID02965369 rno-miR-216a-5p miRNA MIMAT0000886 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID02980991 rno-miR-383-5p miRNA MIMAT0003114 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID03005096 rno-miR-381-3p miRNA MIMAT0003199 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID03068745 rno-miR-429 miRNA MIMAT0001538 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID03107360 rno-miR-301a-3p miRNA MIMAT0000552 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID03114449 rno-miR-200c-3p miRNA MIMAT0000873 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID03134117 rno-miR-9a-3p miRNA MIMAT0004708 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID03184141 rno-miR-33-5p miRNA MIMAT0000812 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID03260055 rno-miR-200b-3p miRNA MIMAT0000875 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID03299110 rno-miR-140-5p miRNA MIMAT0000573 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID03302105 rno-miR-130b-3p miRNA MIMAT0000837 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID03416636 rno-miR-666-3p miRNA MIMAT0017371 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID03456933 rno-miR-340-5p miRNA MIMAT0004650 Ubl3 mRNA 363869 Prediction 0.2202 Ubl3 RAID03460668 rno-miR-206-5p miRNA MIMAT0017154 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID03758910 rno-miR-19a-3p miRNA MIMAT0000789 Ubl3 mRNA 363869 Prediction 0.2381 Ubl3 RAID03836018 rno-miR-139-5p miRNA MIMAT0000845 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID03859960 rno-miR-873-5p miRNA MIMAT0005339 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID04002171 rno-miR-376a-3p miRNA MIMAT0003198 Ubl3 mRNA 363869 Prediction 0.1828 Ubl3 RAID04047737 rno-let-7b-3p miRNA MIMAT0004705 Ubl3 mRNA 363869 Prediction 0.2202