DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004645 rno-miR-148b-5p 288498 Wipi2 ggaCUCACAUAUUGUCU-UGAAg ||| | ||::|||| |||| aggGAGAGGAUGGCAGAGACUUu 2 20 90 112 [rn4:12:12306633-12306655:-] 0.6397 135 0 -16.98 -1.0194 MIMAT0000591 rno-miR-343 288498 Wipi2 agacccgugUGCCUCCCUCu |: ||||||| uugaccugaAUUGAGGGAGa 2 12 77 96 [rn4:12:12306649-12306668:-] 0.6397 143 7 -17.18 -1.0147 MIMAT0000783 rno-miR-10b 288498 Wipi2 uguguuuaagccaagAUGUCCc |||||| auacuguugagaaaaUACAGGu 2 8 144 165 [rn4:12:12306580-12306601:-] 0.6397 120 6 -10.99 -0.1447 MIMAT0000813 rno-miR-34b 288498 Wipi2 guuagUCGAUUAAUGUGA-CGGAu ||| :| ||||| |||| ccaggAGCAGACAACACUGGCCUg 2 19 22 45 [rn4:12:12306700-12306723:-] 0.6397 126 0 -19.31 -0.4916 MIMAT0003380 rno-miR-505 288498 Wipi2 ccuuuggucguucACAACUg |||||| agccuauccauacUGUUGAg 2 8 135 154 [rn4:12:12306591-12306610:-] 0.6397 120 6 -8.92 -0.2839 MIMAT0012839 rno-miR-668 288498 Wipi2 ccAUCACCCGGCUCGGCUCACUGu || || :: | :: |||||| aaUACAGGUUUCACUUCAGUGACu 2 23 157 180 [rn4:12:12306565-12306588:-] 0.6397 122 6 -11.27 -0.2106 MIMAT0001619 rno-miR-322 288498 Wipi2 aggUUUUGUACU--UAACGACGAc |::|| ||| ||||||||| cugAGGACUUGAGCAUUGCUGCUa 2 20 47 70 [rn4:12:12306675-12306698:-] 0.6397 166 7 -17.43 -1.0994 MIMAT0000596 rno-miR-346 288498 Wipi2 ucUCCGUCCGUGAGUCCGUCUgu ||| || : | |||||| ugAGGGAGAGGAU--GGCAGAga 3 22 88 108 [rn4:12:12306637-12306657:-] 0.6397 126 0 -19.99 -0.1212 MIMAT0000600 rno-miR-129 288498 Wipi2 cgUUCGGGUCUGGCGUUUUUc :|| |: | |||||:| caGAGACUUUAAAGCAAAGAg 2 20 103 123 [rn4:12:12306622-12306642:-] 0.6397 131 0 -13.47 -0.1060 MIMAT0000784 rno-miR-15b 288498 Wipi2 acaUUUGGUACU--ACACGACGAu |:: | ||| ||||||| cugAGGACUUGAGCAUUGCUGCUa 2 20 47 70 [rn4:12:12306675-12306698:-] 0.6397 142 7 -17.46 -1.1041 MIMAT0000785 rno-miR-16 288498 Wipi2 gcggUUAUAAAUGC---ACGACGAu |: | ||: | ||||||| gcugAGGACUUGAGCAUUGCUGCUa 2 19 46 70 [rn4:12:12306675-12306699:-] 0.6397 141 7 -13.95 -1.1064 MIMAT0000850 rno-miR-144 288498 Wipi2 ucAUGUAG--UAGAUAUGACAu ||:| | ||| ||||||| guUAUAGCCUAUCCAUACUGUu 2 19 130 151 [rn4:12:12306594-12306615:-] 0.6397 157 7 -12.65 -0.7798 MIMAT0000870 rno-miR-195 288498 Wipi2 cgguuauaaagacACGACGAu ||||||| aggacuugagcauUGCUGCUa 2 9 50 70 [rn4:12:12306675-12306695:-] 0.6397 140 7 -11.48 -1.1064 MIMAT0000872 rno-miR-199a-5p 288498 Wipi2 cuuGUCCAUCAGAC--UUGUGACCc |||| || | | |||||||| gccCAGG-AG-CAGACAACACUGGc 2 21 20 42 [rn4:12:12306703-12306725:-] 0.6397 151 7 -18.62 -0.2922 MIMAT0000886 rno-miR-216a 288498 Wipi2 agugucaacggucgaCUCUAAu |||||| agacuuuaaagcaaaGAGAUUg 2 8 106 127 [rn4:12:12306618-12306639:-] 0.6397 120 6 -9.80 -0.1388 MIMAT0003119 rno-miR-224 288498 Wipi2 auuUG-CCUUGGUGA--UCACUGAac || || :|||| ||||||| aauACAGGUUUCACUUCAGUGACU-- 3 21 157 180 [rn4:12:12306565-12306588:-] 0.6397 138 0 -19.99 -0.1730 MIMAT0003208 rno-miR-374 288498 Wipi2 gugaaUCGUCCAACAU-AAUAUa || || ||||| ||||| agcaaAG-AGAUUGUAGUUAUAg 2 18 115 136 [rn4:12:12306609-12306630:-] 0.6397 127 0 -8.54 -0.8981 MIMAT0003383 rno-miR-497 288498 Wipi2 augUUUGGUGUC-ACACGACGAc ::||: || ||||||| ugaGGACUUGAGCAUUGCUGCUa 2 20 48 70 [rn4:12:12306675-12306697:-] 0.6397 142 7 -13.28 -1.1064 MIMAT0005284 rno-miR-874 288498 Wipi2 agccaGGGAGCCCGGUCC-CGUc |:|| || ||||| ||| gugaaCUCU-GGCCCAGGAGCAg 2 18 10 31 [rn4:12:12306714-12306735:-] 0.6397 123 0 -26.38 -0.9043

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G101679 Wipi2 Rattus norvegicus 288498

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Wipi2 rno-miR-103 35 71 AGU-AUCGGG-----------ACAUGUUACGACGA- || |:|||: || :|| ||||||| ACACUGGCCUGGCUGAGGACUUGAGCAUUGCUGCUA Wipi2 rno-miR-107 38 71 ACUAUCGGG-----------ACAUGUUACGACGA- |:|||: || :|| ||||||| --CUGGCCUGGCUGAGGACUUGAGCAUUGCUGCUA Wipi2 rno-miR-138 31 44 CUAAGUGUUGUGGUCGA |||||||::|| ----GACAACACUGGCC Wipi2 rno-miR-144 127 152 GAUC-AUGUA--GUAGAUAUGACAU ||| ||:| :||| ||||||| GUAGUUAUAGCCUAUCCAUACUGUU Wipi2 rno-miR-15b 47 72 -ACAUUUGGUACUAC--ACGACGAU- || ::||: ||| |||||||| CUGAGGACU-UGAGCAUUGCUGCUAU Wipi2 rno-miR-16 45 72 GCGGUUAUA-AAUGC---ACGACGAU- ||::| ||: |||||||| GGCUGAGGACUUGAGCAUUGCUGCUAU Wipi2 rno-miR-17 36 65 -UGA-UGGACGUGAC------AUUCGUGAAAC ||| :|||| :||| |:||||:| CACUGGCCUG-GCUGAGGACUUGAGCAUUG-- Wipi2 rno-miR-195 40 72 -CGGUUAUAAAGAC-------------ACGACGAU- ||| ||| |||||||| GGCCUGG----CUGAGGACUUGAGCAUUGCUGCUAU Wipi2 rno-miR-199a 22 43 CUUGUCCAUCAGACU--UGUGACCC |||| || | || ||||||| --CCAGG-AG-CAGACAACACUGGC Wipi2 rno-miR-207 89 119 -UUCC-CUCCUCUCGGUCCUCU------UCG- |:|| ||||| :|| |||| ||| GAGGGAGAGGAUGGCA--GAGACUUUAAAGCA Wipi2 rno-miR-20b 40 65 -UGGACGUGAU------ACUCGUGAAAC :|||| :||: ||||||:| GGCCUG-GCUGAGGACUUGAGCAUUG-- Wipi2 rno-miR-214 40 69 GACGGACAGACA--------CG-GACGACA ||||| ||| || :||||| -GGCCUGGCUGAGGACUUGAGCAUUGCUGC Wipi2 rno-miR-224 162 182 AUUUGCCUUGGUGA--UCACUGAAC || :|||| ||||||| ----AGGUUUCACUUCAGUGACUA- Wipi2 rno-miR-24 37 62 -GACAAGGA-CGACUU---GACUCGGU ||| ||| |||||: :||||| ACUGG-CCUGGCUGAGGACUUGAGCA- Wipi2 rno-miR-26a 37 61 CGGAUAGGACCUAA---UGAACUU- || ||||| ||||||: -ACUGGCCUGGCUGAGGACUUGAGC Wipi2 rno-miR-26b 39 61 -UUGGAUAGGACUUAAUGAACUU- ::|||: |||| ||||||: UGGCCUGG-CUGAGG-ACUUGAGC Wipi2 rno-miR-324-3p 21 54 -GGUCGUCGUG------GACC---CCGUCACC- |||| |||| |||| ||| | || CCCAGGAGCAGACAACACUGGCCUGGCUGAGGA Wipi2 rno-miR-326 16 54 UGACC---UCCU--UC--------CCGGGU---CUCC- |||| |||| || ||||: |||| UCUGGCCCAGGAGCAGACAACACUGGCCUGGCUGAGGA Wipi2 rno-miR-330 14 67 AGAGAC---GUCCG--------------GGACACGA---- AACG ||||| |||| |||| ||| |||| ACUCUGGCCCAGGAGCAGACAACACUGGCCUG-GCUGAGGACUUGAGCAUUGCU Wipi2 rno-miR-331 7 31 AAGAUCCUAU---CCGGGUCCCCG- ||: || |||||||| || -CCUGUGAACUCUGGCCCAGGAGCA Wipi2 rno-miR-346 88 108 UCUCCGUC-CGUGAGUCCGUCUGU |||| || | |: |||||| UGAGGGAGAGGAU---GGCAGAG- Wipi2 rno-miR-347 77 98 ACCCGCUGGGU----CUCCCUGU- :||||: |||||| | ---UUGACCUGAAUUGAGGGAGAG Wipi2 rno-miR-34a 33 68 -UUGU---UGG-UCGAUUC-------UGUGACGGU |||| :|| :|||:|| :||:|||: CAACACUGGCCUGGCUGAGGACUUGAGCAUUGCUG Wipi2 rno-miR-34b 26 47 GUUAGUCGAUUAAUGUGAC-GGAU- ||| :| |||||| |||: ----GAGCAGACAACACUGGCCUGG Wipi2 rno-miR-34c 22 46 CGUUAGUCGAUUGAUGUGAC-GGA- ||: ||| :|| |||||| ||| CCAGG-AGCAGACAACACUGGCCUG Wipi2 rno-miR-422b 6 33 CGGA------AGACUGAGGUUCAGGUCA ||| ||||:| |||:| ||| ACCUGUGAACUCUGGC-CCAGGAGCAGA Wipi2 rno-miR-424 47 71 AGGUUUUGUACU--UAACGACGAC : |::|| ||| ||||||||| CUGAGGACUUGAGCAUUGCUGCUA Wipi2 rno-miR-449 40 68 -UGG-UCGAUUGUUA----UGUGACGGU :|| :|||:| :| :||:|||: GGCCUGGCUGAGGACUUGAGCAUUGCUG Wipi2 rno-miR-497 50 71 AUGUUUGGUGUCAC-ACGACGAC ::||: || ||||||| --AGGACUUGAGCAUUGCUGCUA Wipi2 rno-miR-503 49 72 GUCAUG-ACAAG-GGCGACGAU- || || || | ::||||||| GAGGACUUGAGCAUUGCUGCUAU Wipi2 rno-miR-540 21 46 -GGUCCUAG-CUGGA--GACUGGA- |||||| ||| |||:||| CCCAGGAGCAGACAACACUGGCCUG Wipi2 rno-miR-103 47 69 aguauCGGGACAUGUUACGACGA | |:|| :|| ||||||| ctgagGACTTGAGCATTGCTGCT Wipi2 rno-miR-107 48 69 ACUAUCGGGACAUGUUACGACGA ||| :| |:|| :|| ||||||| TGA-GGACTTGAGCATTGCTGCT Wipi2 rno-miR-138 27 43 cuaagUGUUGUGGUCGa |||||||::|| agcagACAACACTGGCc Wipi2 rno-miR-144 127 151 gAUC-AUGUAG--UAGAUAUGACAu ||| ||:| | ||| ||||||| gTAGTTATAGCCTATCCATACTGTt Wipi2 rno-miR-15b 48 70 ACAUUUGGUACUAC---ACGACGAU || ::||: ||| | |||||||| TGAGGACT-TGA-GCATTGCTGCTA Wipi2 rno-miR-16 45 70 gCGG-UUAUAAAUGC---ACGACGAU ||: |: | ||: | |||||||| gGCTGAGGACTTGAGCATTGCTGCTA Wipi2 rno-miR-17 50 79 ugaUGGA--CGU---GAC-AUUCGUGAAAC ||:| ||| ||| || | |||||| aggACTTGAGCATTGCTGCTATGAACTTTG Wipi2 rno-miR-199a 20 42 cuuGUCCAUCAGAC--UUGUGACCc |||| || | | |||||||| gccCAGG-AG-CAGACAACACTGGc Wipi2 rno-miR-207 80 99 uuccCUCCUCUCGGUCCUCUUCg || ||| |||||:| acctGAATTGAG---GGAGAGGa Wipi2 rno-miR-20b 60 79 uggACG-UGAUACUCGUGAAAC ||| :|||| | |||||| catTGCTGCTAT--GAACTTTG Wipi2 rno-miR-214 30 50 gacggacaGACACGGA-CGACa ||| |||| |||| agacaacaCTG-GCCTGGCTGa Wipi2 rno-miR-224 157 182 aUUUG-CCUUGGUGA--UCACUGAac | || || :|||| ||||||| aATACAGGTTTCACTTCAGTGACTaa Wipi2 rno-miR-24 38 62 GACAAGGACGACUU---GACUCGgu ||| |: |||||: :||||| CTGGCCTGGCTGAGGACTTGAGCat Wipi2 rno-miR-26a 36 59 cgGAUAGGAC---CUAAUGAACUu ||: |||| || |||||| caCTGGCCTGGCTGAGGACTTGAg Wipi2 rno-miR-26b 34 59 UUG-GAUAGGAC---UUAAUGAACUu ||| ||: |||| :| |||||| AACACTGGCCTGGCTGAGGACTTGAg Wipi2 rno-miR-324-3p 22 52 GGUCGUCG-----UG-GACC---CCGUCACC |||| ||| || |||| ||| | || CCAGGAGCAGACAACACTGGCCTGGCTGAGG Wipi2 rno-miR-326 7 29 uGAC-CUCCUUCCCGGGU-CUCc ||| || |||||| ||| cCTGTGAACTCTGGCCCAGGAGc Wipi2 rno-miR-330 44 73 agaGACGUCCGGGAC--------ACGAAACg ||| ||| |:|| |||| || tggCTG-AGGACTTGAGCATTGCTGCTATGa Wipi2 rno-miR-331 9 29 aagauccuauCCGGGUCCCCG |||||||| || tgtgaactctGGCCCAGGAGC Wipi2 rno-miR-343 76 96 AGACCCG-UGUGCCUCCCUCU |:|| | : |: |||||||| TTTGACCTGAATTGAGGGAGA Wipi2 rno-miR-346 88 108 uCUCCGUC-CGUGAGUCCGUCUgu |||| || | |: |||||| tGAGGGAGAGGAT---GGCAGAga Wipi2 rno-miR-347 74 96 acccgCUGGGU----CUCCCUgu ||||:: |||||| actttGACCTGAATTGAGGGAga Wipi2 rno-miR-34a 20 44 uuGUUGGUCGAUU-CUGUGA-CGGu | | ||| :| ||||| ||| gcCCAGGAGCAGACAACACTGGCCt Wipi2 rno-miR-34b 22 45 GUUAGUCGAUUAAUGUGA-CGGAu | | ||| :| ||||| |||| CCAGGAGCAGACAACACTGGCCTg Wipi2 rno-miR-34c 21 44 cGUUAGUCGAUUGAUGUGA-CGGA | | ||| :|| ||||| |||| cCCAGGAGCAGACAACACTGGCCT Wipi2 rno-miR-422b 5 26 CGGAAGAC-UGAGGUUCAGGUCa | | | || ||||: :| |||| GACCTGTGAACTCT-GGCCCAGg Wipi2 rno-miR-424 47 70 aggUUUUGUACU--UAACGACGAc |::|| ||| ||||||||| ctgAGGACTTGAGCATTGCTGCTa Wipi2 rno-miR-449 24 44 uggUCGAUUGUUAUGUGA-CGGu ||| :||| ||||| ||| aggAGCAGACA--ACACTGGCCt Wipi2 rno-miR-540 7 23 GGUCCUAGCUGGAGACUGGa || | :|| |||||:|| CCTG---TGAACTCTGGCCc Wipi2 rno-miR-540 22 44 GGUCCUAG-CUG--GAGACUGGA |||||| | ||| | |||:||| CCAGGAGCAGACAACACTGGCCT Wipi2 rno-miR-144 144 151 G------------------AUCA-UGUA--GUAGAUAUGACAU |||| |:| :||| ||||||| CUUUAAAGCAAAGAGAUUGUAGUUAUAGCCUAUCCAUACUGUU Wipi2 rno-miR-15b 63 70 --------------------ACAUUUGGUACUAC--ACGACGAU || :||: ||| |||||||| GCAGACAACACUGGCCUGGCUGAGGACU-UGAGCAUUGCUGCUAU Wipi2 rno-miR-16 63 70 G-----------------CGGUUAUAAA---UGC-ACGACGAU || | :| |||||||| GCAGACAACACUGGCCUGGCUGAGGACUUGAGCAUUGCUGCUAU Wipi2 rno-miR-195 63 70 -------------CGGUUAUAAAGAC-------------ACGACGAU ||| ||| |||||||| GCAGACAACACUGGCCUGG----CUGAGGACUUGAGCAUUGCUGCUAU Wipi2 rno-miR-343 89 96 AGACCCGUG-----------------------UGCCUCCCUCU :|| |||: |: |||||||| CUUGAGCAUUGCUGCUAUGAACUUUGACCUGAAUUGAGGGAGAG Wipi2 rno-miR-424 63 70 A-------------------GGUUUUGUACU--UAACGACGAC : |::|| ||| ||||||||| GCAGACAACACUGGCCUGGCUGAGGACUUGAGCAUUGCUGCUA Wipi2 rno-miR-497 63 70 AUGUUUGGUGUCAC----------------------ACGACGAC :||:|| ||| || ||||||| -GCAGACAACACUGGCCUGGCUGAGGACUUGAGCAUUGCUGCUA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Wipi2 RAID00119284 rno-miR-144-3p miRNA MIMAT0000850 Wipi2 mRNA 288498 Prediction 0.1828 Wipi2 RAID00268411 rno-miR-343 miRNA MIMAT0000591 Wipi2 mRNA 288498 Prediction 0.1828 Wipi2 RAID00431706 rno-miR-129-5p miRNA MIMAT0000600 Wipi2 mRNA 288498 Prediction 0.1828 Wipi2 RAID01328528 rno-miR-195-5p miRNA MIMAT0000870 Wipi2 mRNA 288498 Prediction 0.2202 Wipi2 RAID01639888 rno-miR-346 miRNA MIMAT0000596 Wipi2 mRNA 288498 Prediction 0.1828 Wipi2 RAID01661514 rno-miR-15a-5p miRNA MIMAT0035728 Wipi2 mRNA 288498 Prediction 0.1828 Wipi2 RAID02038345 rno-miR-421-3p miRNA MIMAT0017175 Wipi2 mRNA 288498 Prediction 0.1828 Wipi2 RAID02262739 rno-miR-322-5p miRNA MIMAT0001619 Wipi2 mRNA 288498 Prediction 0.2202 Wipi2 RAID02267131 rno-miR-874-3p miRNA MIMAT0005284 Wipi2 mRNA 288498 Prediction 0.1828 Wipi2 RAID02724725 rno-miR-224-5p miRNA MIMAT0003119 Wipi2 mRNA 288498 Prediction 0.1828 Wipi2 RAID02738012 rno-miR-374-5p miRNA MIMAT0003208 Wipi2 mRNA 288498 Prediction 0.1828 Wipi2 RAID02922913 rno-miR-16-5p miRNA MIMAT0000785 Wipi2 mRNA 288498 Prediction 0.2202 Wipi2 RAID03234890 rno-miR-15b-5p miRNA MIMAT0000784 Wipi2 mRNA 288498 Prediction 0.2202 Wipi2 RAID03433624 rno-miR-216a-5p miRNA MIMAT0000886 Wipi2 mRNA 288498 Prediction 0.1828 Wipi2 RAID03690376 rno-miR-497-5p miRNA MIMAT0003383 Wipi2 mRNA 288498 Prediction 0.2202 Wipi2 RAID03860657 rno-miR-199a-5p miRNA MIMAT0000872 Wipi2 mRNA 288498 Prediction 0.1828 Wipi2 RAID03876761 rno-miR-181b-1-3p miRNA MIMAT0017139 Wipi2 mRNA 288498 Prediction 0.1828