DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000614 rno-miR-151* 288692 Wsb2 ggaGUUCCUCGG----AGUCAGAUc ::|| |||| |||||||| uugUGAGCAGCCUUUGUCAGUCUAg 2 19 166 190 [rn4:12:40406953-40406977:-] 0.5152 153 7 -21.96 -0.5913 MIMAT0003380 rno-miR-505 288692 Wsb2 ccUUUGGUCGUUCACAACUg |: |:||: ||||||| ucAGUCUAGU-UGUGUUGAa 2 19 182 200 [rn4:12:40406943-40406961:-] 0.5152 148 7 -14.78 -0.8575 MIMAT0005290 rno-miR-883 288692 Wsb2 uaUGAC-UCUCUACAACGUCAAu ::|| || | | ||||||| guGUUGAAGCCAAG-UGCAGUUg 2 21 193 214 [rn4:12:40406929-40406950:-] 0.5152 145 7 -15.70 -0.2446 MIMAT0005332 rno-miR-708* 288692 Wsb2 gaUCUUCG--AGU-GUCAGAUCAAc || ||| |:: |||||||||| ugAGCAGCCUUUGUCAGUCUAGUUg 2 21 169 193 [rn4:12:40406950-40406974:-] 0.5152 162 7 -23.15 -0.2854 MIMAT0000596 rno-miR-346 288692 Wsb2 ucUCCGUCCGUGAGUCCGUCUGu ||| || :| ||||||||| cgAGGAUGGAGC-CAGGCAGACc 2 22 48 69 [rn4:12:40407074-40407095:-] 0.4980 163 7 -27.75 -0.1135 MIMAT0000786 rno-miR-17-5p 288692 Wsb2 gauGGACGUGACAUUCGU--GAAAc | | |::|||:|||| |||| cuuCGUCCGUUGUGAGCAGCCUUUg 2 21 157 181 [rn4:12:40406962-40406986:-] 0.5152 120 0 -19.99 -0.2282

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G116270 Wsb2 Rattus norvegicus 288692

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Wsb2 rno-let-7a 138 157 UUGAUAU-GUUGGAUGAUGGAGU- :|: ||:||| ||||||: ---GGUGCCAGCCU--UACCUCGC Wsb2 rno-let-7b 65 97 -UUGGUGUG------------UUGGAUGAUGGAGU :|||||:| :|||| |||| AGACCACGCUGGACCAGUGUGGACCUU---CCUCC Wsb2 rno-let-7c 133 157 UUGGUAUGUUGGAUG--AUGGAGU- ||:|: :|| :| ||||||: -UCCGUGGUGCCAGCCUUACCUCGC Wsb2 rno-let-7d 138 156 UGAUAC-GUUGGAUGAUGGAGA :|| ||:||| |||||| --GGUGCCAGCCU--UACCUCG Wsb2 rno-let-7d* 203 230 UCUUUC-CGUCGU--CC---AGCAUAUC- ||| ||||: || ||||:|:| --CAAGUGCAGUUGUGGAAGUCGUGUGGG Wsb2 rno-let-7e 129 157 -UGA---UAUGUUGGA-GG-AUGGAGU- ||| :|: :|| || ||||||: CACUUCCGUGGUGCCAGCCUUACCUCGC Wsb2 rno-miR-100 202 232 GUGUUCAA------GCCU--AGAU-GCCCAA ||||| :||| || :|||| -CCAAGUGCAGUUGUGGAAGUCGUGUGGGUA Wsb2 rno-miR-128a 54 88 UUUUCUC-------------UGGCCAAGUGACACU- :||| :|:|| || ||||: --UGGAGCCAGGCAGACCACGCUGGACCAGUGUGGA Wsb2 rno-miR-128b 51 88 -CUUUCUC-------------UGGCCAAGUGACACU- || :||| :|:|| || ||||: GGAUGGAGCCAGGCAGACCACGCUGGACCAGUGUGGA Wsb2 rno-miR-136 30 60 AGGUA--GUAGUUU---UGU--UUACCUCA ||| || ::| :|: :|||||| ACCAGUACAAGGGACUGGCGAGGAUGGAGC Wsb2 rno-miR-140* 132 172 ACAGGCACCAA------GAUGGG-------------ACACCAU |||||||| :||||: |||| -UUCCGUGGUGCCAGCCUUACCUCGCCUUCGUCCGUUGUGA-- Wsb2 rno-miR-141 67 87 -GGUA-GAAAUGGUCUGUCACAAU ||| || ||||| ||| ACCACGCUGGACCAGU--GUGG-- Wsb2 rno-miR-150 29 54 GUGACCAUGUUCCCA-ACC-CUCU- || ||||||||| ||| |||: AACCAGUACAAGGGACUGGCGAGGA Wsb2 rno-miR-151 150 193 -GGAGU---------------UCCUCGG----AGUCAGAUCA ||||: || |||| |||||||||| ACCUCGCCUUCGUCCGUUGUGAGCAGCCUUUGUCAGUCUAGUU Wsb2 rno-miR-151* 71 97 AUGAUCUG---ACACUC--GAGGAGCU :||:||| ||||: :||||| CGCUGGACCAGUGUGGACCUUCCUCC- Wsb2 rno-miR-17 147 183 UGAUGGACGUG----------ACAUUCGU--GAAAC- :||||| |:| |||:|||| ||||| CUUACCU-CGCCUUCGUCCGUUGUGAGCAGCCUUUGU Wsb2 rno-miR-183 120 146 GUCACUUAA--GAUGG--UCACGGUAU ||||| || || :|||||| GAGUGAUCCCACUUCCGUGGUGCCAG- Wsb2 rno-miR-187 19 52 GCCGACGUUGUGU-----------UCUG--UGCU- |||||:|| | :||| :||| --CCUGCAGCAGAACCAGUACAAGGGACUGGCGAG Wsb2 rno-miR-192 100 122 -CCG-ACA-GUUAAGUAUCCAGUC- ||| ||| ||| :|||||| | UGGCAUGUGCAA---GUAGGUCUGA Wsb2 rno-miR-199a 55 78 -CUU-GUCCAUCAGACUUGUGACCC ||: |||| || | ||:|||| GGAGCCAGGCAGACC--ACGCUGGA Wsb2 rno-miR-200a 53 68 UGUAGCAAUGGUCUGUCACAAU :| :||||:||| ---AUGGAGCCAGGCAGA---- Wsb2 rno-miR-207 45 75 UUCC-CUCCU--CUCGGUCC-UCUU---CG- || ||||| |||||||| ||| || -UGGCGAGGAUGGAGCCAGGCAGACCACGCU Wsb2 rno-miR-20a 148 183 GAUGGACGUG----------AUAUUCGU--GAAAU- ||||| |:| |:|:|||| ||||: UUACCU-CGCCUUCGUCCGUUGUGAGCAGCCUUUGU Wsb2 rno-miR-20b 154 183 -UGGACGU----GAUACUCGU--GAAAC- :||| |: :|:|||||| ||||| CGCCUUCGUCCGUUGUGAGCAGCCUUUGU Wsb2 rno-miR-20b* 187 214 -GUCUUCACGAGUG----UGACGUCA- :|| |||:| | | |||||| CUAGUUGUGUUGAAGCCAAGUGCAGUU Wsb2 rno-miR-217 184 214 -UAGGUCAGU-CAA----GGACUACGUCAU :||:|||:: ||| || :|||||| AGUCUAGUUGUGUUGAAGCCAAGUGCAGUU Wsb2 rno-miR-221 54 88 -CUUUGGGUCGUCUG-----------UUACAUCGA |:|:|| :|||||| |:|||:| UGGAGCCAGGCAGACCACGCUGGACCAGUGUGGA- Wsb2 rno-miR-23a 84 110 -CCUUU----AGGG--ACCGUUACACUA ||| |||| ||||| |||| UGGACCUUCCUCCCCAUGGCA-UGUGC- Wsb2 rno-miR-24 179 206 GACA---AGGACGACUUGAC-UCGGU- ||| ||: |:|| :|| ||||| UUGUCAGUCUAGUUGUGUUGAAGCCAA Wsb2 rno-miR-296 39 62 UGUCCUAA---CUCCCCCC-CGGGA :||| |||| || ||| -AGGGACUGGCGAGGAUGGAGCCA- Wsb2 rno-miR-298 169 189 CCUUCUUGUCGGGAGGAGACGG- ||:|||||:|: || |:| ---UGAGCAGCCUUUGUCAGUCU Wsb2 rno-miR-31 135 160 GUCGAUACGGUCGUA---GAACGGA- |: :||||||| || |||| -CGUGGUGCCAGCCUUACCUCGCCUU Wsb2 rno-miR-320 152 194 AAGCGGGAGA-----------GUUGGG----------UCGAAAA |||||:|| ||:||: ||:| CUCGCCUUCGUCCGUUGUGAGCAGCCUUUGUCAGUCUAGUUG-- Wsb2 rno-miR-324-3p 58 85 -GGU-CGUC--GUG-GACCCCGUCACC ||| |||| ||| |||| ||||| GCCAGGCAGACCACGCUGGACCAGUGU Wsb2 rno-miR-326 42 69 -UGACC--UCCUUCC-CGG---GUCUCC ||||| |||| || ||| |||| GACUGGCGAGGAUGGAGCCAGGCAGAC- Wsb2 rno-miR-328 40 64 UGCCUUCCCGUCUCU-CC-CGGUC- ||| |||: :|| || ||||| -GGGACUGGCGAGGAUGGAGCCAGG Wsb2 rno-miR-331 49 66 AAGAUCCUAUC-CGGGUCCCCG- |||||:| ||| ||| ---GAGGAUGGAGCCA---GGCA Wsb2 rno-miR-333 48 73 UUUUCA---UUGA-UCGUGUGGUG- :|:| |:| :||| ||||| CGAGGAUGGAGCCAGGCAGACCACG Wsb2 rno-miR-338 22 59 AGUUGUUUUAG----------UGACUACG---ACCU- ||:||:|| | |||| | |||| GCAGCAGAACCAGUACAAGGGACUGGCGAGGAUGGAG Wsb2 rno-miR-342 207 231 CUGCCCACGCUAA-AGACACACUCU :| | ||:|: || |||||:| UGCAGUUGUGGAAGUC-GUGUGGGU Wsb2 rno-miR-343 39 60 AGACCC-GUGUG--CCUCCCUCU ||| | :| ||| |||| --AGGGACUGGCGAGGAUGGAGC Wsb2 rno-miR-346 40 70 -UCU--CCG-UCCG----UGAGUCCGUCUGU :|| ||| ||| :| ||||||||| GGGACUGGCGAGGAUGGAGC-CAGGCAGACC Wsb2 rno-miR-347 24 46 ACCCG-CUGGGUC----UCCCUGU || || |||| |||||| --AGCAGAACCAGUACAAGGGACU Wsb2 rno-miR-370 75 119 -UUGGUC-CA------AGGUGGGG------------UCGUCCG :||||| || ||| |||| ||:|||: GGACCAGUGUGGACCUUCCUCCCCAUGGCAUGUGCAAGUAGGUC Wsb2 rno-miR-378 35 68 -UGUGUCCUGG--------ACCUCAGUCC-UC- ||| :||||: ||||| |||| || UACAAGGGACUGGCGAGGAUGGAGCCAGGCAGA Wsb2 rno-miR-422b 174 214 -CGGAAG-----------ACUGA-----GGUUCAGGUCA- |||||: || | |||||| |||| AGCCUUUGUCAGUCUAGUUGUGUUGAAGCCAAGUGCAGUU Wsb2 rno-miR-448 80 113 -UAC-CCUGU-AGGA-------UGUAUACGUU- :|| |||| |||| :|||:||||| AGUGUGGACCUUCCUCCCCAUGGCAUGUGCAAG Wsb2 rno-miR-483 35 60 -UGUUCU---GCC-CUCCCCUCCUCACU |||||: :|| |||| |||| UACAAGGGACUGGCGAGGAU-GGAGC-- Wsb2 rno-miR-485 131 151 CUUAAGUAGUGCCGGUCGGAGA ||| :: ||||||||: --CUUCCGUGGUGCCAGCCUUA Wsb2 rno-miR-493 72 94 -GACC-GUGUGUCAUCUGGAAGU |||| | || ||:||||||| GCUGGAC-CAGUGUGGACCUUCC Wsb2 rno-miR-505 54 90 CCUUUGGUC-GU--------------UCACAACUG- |:|:|||| || ||||| ||| UGGAGCCAGGCAGACCACGCUGGACCAGUGUGGACC Wsb2 rno-let-7a 136 155 uugauauGUUGGAUGAUGGAGu ||:|| :|||||| gtggtgcCAGCC--TTACCTCg Wsb2 rno-let-7b 66 96 uUGGUGUG--UUGG----AU---GAUGGAGu |||||:| :||| |: || |||| gACCACGCTGGACCAGTGTGGACCTTCCTCc Wsb2 rno-let-7c 132 155 uuGGUAU----GUUGGAUGAUGGAGu ||:|: ||:|| :|||||| ttCCGTGGTGCCAGCC--TTACCTCg Wsb2 rno-let-7d 136 155 ugauAC-GUUGGAUGAUGGAGa || ||:|| :|||||| gtggTGCCAGCC--TTACCTCg Wsb2 rno-let-7d* 201 228 ucuUUC-CGUCGUC-----CAGCAUAUC ||| ||||: | |||||:|:| gccAAGTGCAGTTGTGGAAGTCGTGTGG Wsb2 rno-let-7e 136 155 ugauAUGUUGGAGGAUGGAGu |:| | | |:|||||| gtggTGCCAGC-CTTACCTCg Wsb2 rno-miR-100 206 231 guguUCAA-GCCU--AG-AUGCCCAa |||| :||| || |::|||| gtgcAGTTGTGGAAGTCGTGTGGGTa Wsb2 rno-miR-128a 59 86 uuUUC-UCUGG-----CCAAGUGACACu |:| ||||| || || |||| ccAGGCAGACCACGCTGGACCAGTGTGg Wsb2 rno-miR-128b 59 86 cuUUC-UCUGG-----CCAAGUGACACu |:| ||||| || || |||| ccAGGCAGACCACGCTGGACCAGTGTGg Wsb2 rno-miR-140* 115 141 aCAGG--CACCAAGAUG-GGACACCAu |||: ||| | | || :| ||||| gGTCTGAGTGATCCCACTTCCGTGGTg Wsb2 rno-miR-141 68 86 GGUAGAAAUGGUCU-GUCACAau ||| | :|::|| |||||| CCA-C---GCTGGACCAGTGTgg Wsb2 rno-miR-151 166 191 ggaguUCCUCGG----AGUCAGAUCA || |||| |||||||||| ttgtgAGCAGCCTTTGTCAGTCTAGT Wsb2 rno-miR-151* 71 97 auGAUCUG---ACACU--CGAGGAGcu ||:||| ||||: :||||| cgCTGGACCAGTGTGGACCTTCCTCcc Wsb2 rno-miR-17 156 181 uGAUGGACGUGACAUUCGU--GAAAC || | | |::|||:|||| ||||| cCTTCGTCCGTTGTGAGCAGCCTTTG Wsb2 rno-miR-183 120 146 gUCACUUAAGAUG-----GUCACGGUau |||| || | || ::|||||| gAGTG-ATCCCACTTCCGTGGTGCCAgc Wsb2 rno-miR-187 50 73 gCCGACGUUGUGU---UCU-GUGCu || || |:| || ||| |||| aGGATGGAGC-CAGGCAGACCACGc Wsb2 rno-miR-192 101 120 CCG-ACA-GUUAAGUAUCCAGuc ||| ||| ||| :|||||| GGCATGTGCAA---GTAGGTCtg Wsb2 rno-miR-199a 56 77 CUU-GUCCAUCAGACUUGUGACCc ||: |||| || | ||:|||| GAGCCAGGCAGAC--CACGCTGGa Wsb2 rno-miR-200a 67 86 UGUAGCAAUGGUCU-GUCACAau || || |::|| |||||| ACCACG---CTGGACCAGTGTgg Wsb2 rno-miR-207 38 64 UUCCCU--CCUCUCGGUCCUC--UUCG |||||| || ||| |||| |:|| AAGGGACTGGCGAGGATGGAGCCAGGC Wsb2 rno-miR-20a 157 181 GAUGGACGUGAUAUUCGU--GAAAu || | | |::|:|:|||| |||| CTTCGTCCGTTGTGAGCAGCCTTTg Wsb2 rno-miR-20b 159 181 uGGACGUGAUACUCGU--GAAAC | | |::|:|||||| ||||| tCGTCCGTTGTGAGCAGCCTTTG Wsb2 rno-miR-20b* 188 212 gUCUUCACGAGU---G-UGACGUCA || |||:| | | | |||||| tAGTTGTGTTGAAGCCAAGTGCAGT Wsb2 rno-miR-217 185 213 uAGGUCAGU-CAA----GGACUACGUCAu ||:|||:: ||| || :|||||| gTCTAGTTGTGTTGAAGCCAAGTGCAGTt Wsb2 rno-miR-221 40 60 CUUUGGGUCGUCUGUUACAUCGa |::| |::|| || :||| ||| GGGA-CTGGC-GAGGATGGAGCc Wsb2 rno-miR-23a 62 87 CCUUUAGG---GACC--GUUACACua || |: || |||| ||:|||| GGCAGACCACGCTGGACCAGTGTGga Wsb2 rno-miR-296 36 62 UGU--CCUAA---CUCC-CCCCCGGga ||| ||| | |||| || ||| ACAAGGGACTGGCGAGGATGGAGCCag Wsb2 rno-miR-298 166 183 ccuuCUUGUCGGGAGGAGACGG ||:||| |||:||:| ttgtGAGCAG----CCTTTGTC Wsb2 rno-miR-31 134 158 GUCGAUACGGUCG---UAGAACGGA | |: :||||||| | || |||| CCGTGGTGCCAGCCTTACCTCGCCT Wsb2 rno-miR-320 158 180 AAGCGGGAGAGUUGGGUCGAAAA ||||:|| :| : |||| ||| TTCGTCCGTTGTGAGCAGCCTTT Wsb2 rno-miR-324-3p 59 84 GGU-CGUCGUGGACC--CC--GUCACc ||| |||| ||| | || ||||| CCAGGCAG-ACCACGCTGGACCAGTGt Wsb2 rno-miR-326 43 69 UGAC--CUCCUUCC-CGG---GUCUcc |||| ||||| || ||| |||| ACTGGCGAGGATGGAGCCAGGCAGAcc Wsb2 rno-miR-328 39 62 UGCCUUCCCG--UCUCUCCCGGUC | ||| ||| :|| :| ||||| AGGGACTGGCGAGGATGGAGCCAG Wsb2 rno-miR-331 46 66 aaGAUCCUAUCCGGGUCCccg | |||||:| ||||| ggCGAGGATGGAGCCAGGcag Wsb2 rno-miR-333 51 71 uuUUCAUUGAU-CGUGUGGUG | | |:| | ||| ||||| ggATGGAGCCAGGCAGACCAC Wsb2 rno-miR-338 50 77 aguUGUUUUAGU--GAC---UACGACCU |:::|: || | | | |||||| aggATGGAGCCAGGCAGACCACGCTGGA Wsb2 rno-miR-343 43 59 aGACCCGUGUGCCUCCCUCu |||| |: ||| |||| aCTGG---CGAGGATGGAGc Wsb2 rno-miR-346 48 69 uCUCCGUCCGUGAGUCCGUCUGu |||| || :| ||||||||| cGAGGATGGAGC-CAGGCAGACc Wsb2 rno-miR-347 22 45 accCG-CUGGGU----CUCCCUGu || || ||| |||||| gcaGCAGAACCAGTACAAGGGACt Wsb2 rno-miR-370 57 77 UUGGUCCAAGGUGGGGU-CGUCCg |:||||| || ||| || || AGCCAGG---CAGACCACGCTGGa Wsb2 rno-miR-378 36 65 UGUGUCCUG---G-----ACCUCAGUCCuc ||| :|||| | ||||| |||| ACAAGGGACTGGCGAGGATGGAGCCAGGca Wsb2 rno-miR-422b 175 191 CGGAAGACUGAGGUUCAGGUCA ||||| || || ||||:||| GCCTT-TG--TC--AGTCTAGT Wsb2 rno-miR-422b 191 214 cggAAGACUGAGGUUCAGGUCA-- | :||| |||||| |||| ttgTGTTGAAGCCAAGTGCAGTTG Wsb2 rno-miR-448 83 111 uACCCUGUAGGA-------UGUAUACGUU ||| | |||| :|||:||||| gTGGACCTTCCTCCCCATGGCATGTGCAA Wsb2 rno-miR-483 30 56 UGUUC-UG--CCCU--CCCCUCCUCACu || || || |||| || ||||| || ACCAGTACAAGGGACTGGCGAGGA-TGg Wsb2 rno-miR-485 129 150 cUUAAGUAGUGC--CGGUCGGAga | ||| |::| |||||||| cACTTC--CGTGGTGCCAGCCTta Wsb2 rno-miR-493 73 93 GACCGUGUGUCAUCUGGAAGu |||| || ||:||||||| CTGGACCAGTGTGGACCTTCc Wsb2 rno-miR-505 182 200 ccUUUGGUCGUUCACAACUg |: |:||: ||||||| tcAGTCTAGT-TGTGTTGAa Wsb2 rno-miR-505 62 88 CC-UUUGGU-CG---U--UCACAACUG || |:|||| || | ||||| ||| GGCAGACCACGCTGGACCAGTGTGGAC Wsb2 rno-miR-151 184 191 --GGAG---------------UUCCUCGG----AGUCAGAUCA |||| :|| |||| |||||||||| UACCUCGCCUUCGUCCGUUGUGAGCAGCCUUUGUCAGUCUAGUU Wsb2 rno-miR-346 62 69 U---------------------CUCCGUCCGUGAGUCCGUCUGU |||| || :| ||||||||| AGAACCAGUACAAGGGACUGGCGAGGAUGGAGC-CAGGCAGACC Wsb2 rno-miR-493 86 93 ----------------------GACCGUGUGUCAUCUGGAAGU |||| || ||:||||||| GGAUGGAGCCAGGCAGACCACGCUGGACCAGUGUGGACCUUCC Wsb2 rno-miR-505 193 200 CCUUU------------------------GGUCGUUCACAACUG |:||: ||||||| UUCGUCCGUUGUGAGCAGCCUUUGUCAGUCUAGUU-GUGUUGAA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Wsb2 RAID00596446 rno-miR-873-3p miRNA MIMAT0017318 Wsb2 mRNA 288692 Prediction 0.1828 Wsb2 RAID01820008 rno-miR-346 miRNA MIMAT0000596 Wsb2 mRNA 288692 Prediction 0.1828 Wsb2 RAID03229292 rno-miR-17-5p miRNA MIMAT0000786 Wsb2 mRNA 288692 Prediction 0.1828 Wsb2 RAID03302849 rno-miR-505-3p miRNA MIMAT0003380 Wsb2 mRNA 288692 Prediction 0.1828