DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000554 rno-miR-324-3p 304396 LOC304396 ggUCGUCGUGGACCCCGUCACc ||| |:|| ||||||| cuAGC-CCGCCCAAGGCAGUGu 2 21 1135 1155 [rn4:12:21658338-21658358:+] 0.5808 150 7 -23.41 -0.2681 MIMAT0000554 rno-miR-324-3p 304396 LOC304396 gguCGUCGUGGACC--CCGUCACc | || || || ||||||| uguGGAG-ACGAGGAAGGCAGUGu 2 20 902 924 [rn4:12:21658011-21658033:+] 0.6545 144 7 -17.00 -0.4777 MIMAT0000570 rno-miR-331 304396 LOC304396 aagauccuAUCCGGGUCCCCg |||| ||||||| ucucugccUAGGACCAGGGGa 2 14 160 180 [rn4:12:21650912-21650932:+] 0.5103 157 7 -25.12 -0.3644 MIMAT0000576 rno-miR-336 304396 LOC304396 ucuGAUCUAUACCUUCCCACu | ||| | ||||||| gccCCAGA-AGCAAAGGGUGu 2 19 622 641 [rn4:12:21651464-21651478,21657526-21657530:+] 0.6722 144 7 -12.51 -0.3246 MIMAT0004655 rno-miR-345-3p 304396 LOC304396 agaGGU-CUGGGGAUCAA-GUCCc ||| |||: | |||| |||| caaCCACGACUACAAGUUCCAGGc 2 20 469 492 [rn4:12:21651221-21651244:+] 0.7012 130 0 -20.12 -0.4293 MIMAT0000599 rno-miR-349 304396 LOC304396 ucuccaauucugucGUCCCGAc ||||||| agauggcauuuccuCAGGGCUg 2 9 376 397 [rn4:12:21651128-21651149:+] 0.6057 140 7 -20.64 -0.1562 MIMAT0000604 rno-miR-350 304396 LOC304396 cacUUUCACAUACCCG-----AAACACUu |:|||| |||||| ||||||| caaAGAGUGGAUGGGCUGGCAUUUGUGAa 2 22 686 714 [rn4:12:21657575-21657603:+] 0.6600 168 7 -26.54 -0.6044 MIMAT0000610 rno-miR-352 304396 LOC304396 augauacgUUGGAUGAUGAGa :|: ||||||| gggcccagGAUGCACUACUCa 2 14 39 59 [rn4:12:21650791-21650811:+] 0.5103 141 7 -11.14 -0.1002 MIMAT0004708 rno-miR-9* 304396 LOC304396 ugaaagccaauAGAUCGAAAUa |||||||||| aggaucuccauUCUAGCUUUAu 2 12 86 107 [rn4:12:21650838-21650859:+] 0.5103 155 7 -14.80 -0.5423 MIMAT0004710 rno-miR-17-3p 304396 LOC304396 gguguucacgGAAGUGACGUCa || ||||||| gcuccucacgCUCAACUGCAGu 2 13 499 520 [rn4:12:21651341-21651362:+] 0.6843 144 7 -18.27 -0.4888 MIMAT0004722 rno-miR-30d* 304396 LOC304396 cgUCGUUUGUAGA-CUG-ACUUUc ||||: || || || ||||| gaAGCAGCCACCUCCACUUGAAAc 2 21 952 975 [rn4:12:21658061-21658084:+] 0.5273 127 0 -12.07 -0.3610 MIMAT0000809 rno-miR-30a* 304396 LOC304396 cgaCGUUUGUAG-GCUG-ACUUUc |||: || | | || ||||| gaaGCAGCCACCUCCACUUGAAAc 2 20 952 975 [rn4:12:21658061-21658084:+] 0.5273 122 0 -12.67 -0.3610 MIMAT0004728 rno-miR-124* 304396 LOC304396 uaguuccAGGCGAC-ACUUGUGc | || || ||||||| guggaucUACGAUGUUGAACACc 2 16 925 947 [rn4:12:21658034-21658056:+] 0.5909 150 7 -13.14 -0.3853 MIMAT0004738 rno-miR-199a-3p 304396 LOC304396 auugGUUAC-ACGUCU-GAUGACa |:||| || | | |||||| ucuaCGAUGUUGAACACCUACUGa 2 19 930 953 [rn4:12:21658039-21658062:+] 0.5909 125 6 -15.39 -0.4639 MIMAT0003116 rno-miR-501 304396 LOC304396 aaaGUGGGUCCCUGUUU-CCUAa | ||:| |||||| |||| ugcCUCCUA-UGACAAACGGAUc 2 20 424 445 [rn4:12:21651176-21651197:+] 0.7012 125 0 -15.96 -0.4717 MIMAT0003121 rno-miR-483 304396 LOC304396 ugUUCUGCCCUCCCCUCC-UCACu :|||| || || ||| |||| ugGAGAC--GA-GGAAGGCAGUGu 2 22 904 924 [rn4:12:21658013-21658033:+] 0.6545 120 0 -21.07 -0.3321 MIMAT0003198 rno-miR-376a 304396 LOC304396 ugcaCCUAAAAGGAGAUGCUa | :| | ||||||| ggcaGUGUGUGGAUCUACGAu 2 18 917 937 [rn4:12:21658026-21658046:+] 0.6545 141 7 -18.78 -0.5185 MIMAT0003209 rno-miR-363* 304396 LOC304396 uuuaACGUAG-CACUAGGUGGGc ||| || | ||||||| gggcUGCCUCUCUCCUCCACCCc 2 19 392 414 [rn4:12:21651144-21651166:+] 0.6057 149 7 -16.10 -0.1028 MIMAT0003212 rno-miR-20b-3p 304396 LOC304396 ggucuucaCGAGUGUGACGUCa ||||| ||||||| cuccucacGCUCA-ACUGCAGu 2 15 500 520 [rn4:12:21651342-21651362:+] 0.6843 156 7 -21.40 -0.4594 MIMAT0003378 rno-miR-378* 304396 LOC304396 uguGUCCUGGACCUCAGUCCUc || |:| | ||||||| gccCAAGGCAGUGUGUCAGGAc 2 20 1142 1163 [rn4:12:21658345-21658366:+] 0.5808 151 7 -16.16 -0.1313 MIMAT0005289 rno-miR-881 304396 LOC304396 agauaagucuuuaCGGUGUCAa |||||||| aguucuuauccuaGCCACAGUc 2 10 296 317 [rn4:12:21651048-21651069:+] 0.5103 145 7 -14.77 -0.1687 MIMAT0005290 rno-miR-883 304396 LOC304396 uaugacucucuacaACGUCAAu ||||||| uccucacgcucaacUGCAGUUc 2 9 501 522 [rn4:12:21651343-21651364:+] 0.6843 140 7 -7.28 -0.1559 MIMAT0005323 rno-miR-532-3p 304396 LOC304396 acgUUCGGAAC-CCACAC-CCUCc || ||| | | |||| |||| caaAAACCUCGUGCUGUGUGGAGa 2 20 886 909 [rn4:12:21657995-21658018:+] 0.6545 126 0 -16.09 -0.2686 MIMAT0012826 rno-miR-220 304396 LOC304396 uccagagaCUGUGACACCACc || : ||||||| uugugaacGAAGAUGUGGUGg 2 14 708 728 [rn4:12:21657597-21657617:+] 0.6600 145 7 -20.40 -0.1947 MIMAT0012827 rno-miR-1224 304396 LOC304396 gaGGU-GGAGGGGUC-AGGAGUg ||| || |||| |||||| uuCCAGGCUAGCCAGCUCCUCAc 2 20 485 507 [rn4:12:21651237-21651247,21651338-21651349:+] 0.6927 126 6 -27.48 -0.2717 MIMAT0012839 rno-miR-668 304396 LOC304396 ccAUCACCCGGCUCGGCU-CACUGu |:||| ||| | | || ||||| uaUGGUGAGCCCAACAGAGGUGACa 2 23 200 224 [rn4:12:21650952-21650976:+] 0.5103 138 0 -21.02 -0.1332 MIMAT0012848 rno-miR-294 304396 LOC304396 ucUAUCCCGGAGGUAAA-ACUc || ||||: ||||| ||| ggAU-GGGCUGGCAUUUGUGAa 2 20 694 714 [rn4:12:21657583-21657603:+] 0.6600 125 0 -17.01 -0.3958 MIMAT0012853 rno-miR-761 304396 LOC304396 acaCAGUCAAAGUGGGACGACg | ||| || ||||||| ccgGACAGCUU---CCUGCUGg 2 20 557 575 [rn4:12:21651399-21651417:+] 0.6843 147 7 -17.79 -0.1110 MIMAT0012854 rno-miR-764 304396 LOC304396 uccuccuguacACUCGUGg ||||||| cuacuucucacUGAGCACc 2 9 859 877 [rn4:12:21657880-21657898:+] 0.6861 140 7 -14.21 -0.3779 MIMAT0000562 rno-let-7d 304396 LOC304396 uuGAUACGUUGGA--U-GAUGGAGa | |||||:||| | ||||||| gcCAAUGCAGCCUUCACCUACCUCa 2 21 1067 1091 [rn4:12:21658270-21658294:+] 0.5808 166 7 -25.26 -0.4063 MIMAT0000566 rno-miR-329 304396 LOC304396 uuuuuccaaucgaCCCACACAa |||||||| ccccagaagcaaaGGGUGUGUg 2 10 623 644 [rn4:12:21651465-21651478,21657526-21657533:+] 0.6722 145 7 -16.34 -0.4196 MIMAT0000583 rno-miR-339-5p 304396 LOC304396 gcACUCGAGG---ACCU--CCUGUCCCu ||: |||| ||| |||||||| ggUGGCCUCCAAAGGGAGUGGACAGGGc 2 22 724 751 [rn4:12:21657613-21657617,21657750-21657772:+] 0.6731 155 7 -32.07 -0.1494 MIMAT0000583 rno-miR-339-5p 304396 LOC304396 gcACUCGAGGAC--CUCCU-GUCCCu || |: :||| |||| ||||| ucUGUGUCUCUGCCUAGGACCAGGGg 2 22 154 179 [rn4:12:21650906-21650931:+] 0.5103 124 0 -25.70 -0.1590 MIMAT0000589 rno-miR-342-3p 304396 LOC304396 ugcccacgcuaaagACACACUCu |||||||| ccagaagcaaagggUGUGUGAGg 2 10 625 647 [rn4:12:21651467-21651478,21657526-21657536:+] 0.6722 145 7 -16.98 -0.3312 MIMAT0000774 rno-let-7a 304396 LOC304396 uuGAUAUGUUGGA--U-GAUGGAGu | ||:||:||| | ||||||| gcCAAUGCAGCCUUCACCUACCUCa 2 21 1067 1091 [rn4:12:21658270-21658294:+] 0.5808 162 7 -25.91 -0.4095 MIMAT0000775 rno-let-7b 304396 LOC304396 uuGGUGUGUUGGA--U-GAUGGAGu | |::||:||| | ||||||| gcCAAUGCAGCCUUCACCUACCUCa 2 21 1067 1091 [rn4:12:21658270-21658294:+] 0.5808 158 7 -26.95 -0.4095 MIMAT0000776 rno-let-7c 304396 LOC304396 uuGGUAUGUUGGA--U-GAUGGAGu | ||:||:||| | ||||||| gcCAAUGCAGCCUUCACCUACCUCa 2 21 1067 1091 [rn4:12:21658270-21658294:+] 0.5808 162 7 -29.28 -0.4095 MIMAT0000777 rno-let-7e 304396 LOC304396 uuGAUAUGUUGGA---GGAUGGAGu | ||:||:||| |||||||| gcCAAUGCAGCCUUCACCUACCUCa 2 21 1067 1091 [rn4:12:21658270-21658294:+] 0.5808 167 7 -28.78 -0.4095 MIMAT0000778 rno-let-7f 304396 LOC304396 uuGAUAUGUUAGA--U-GAUGGAGu | ||:||: || | ||||||| gcCAAUGCAGCCUUCACCUACCUCa 2 21 1067 1091 [rn4:12:21658270-21658294:+] 0.5808 154 7 -20.40 -0.4095 MIMAT0000779 rno-let-7i 304396 LOC304396 uuGUCGUGUUUGA--U-GAUGGAGu || ::||: || | ||||||| gcCAAUGCAGCCUUCACCUACCUCa 2 21 1067 1091 [rn4:12:21658270-21658294:+] 0.5808 150 7 -19.67 -0.4095 MIMAT0000794 rno-miR-24 304396 LOC304396 gacAAGGACGACUUGA-CUCGGu | ||||: ||:|| ||||| aucUACCUGUGGAGCUGGAGCCa 2 20 755 777 [rn4:12:21657776-21657798:+] 0.6861 135 0 -26.20 -0.1633 MIMAT0000800 rno-miR-28 304396 LOC304396 gaguuaUCUGA-CACUCGAGGAa ||:|| | ||||||| aguuccAGGCUAGCCAGCUCCUc 2 17 483 505 [rn4:12:21651235-21651247,21651338-21651347:+] 0.6927 151 7 -17.61 -0.1059 MIMAT0000816 rno-miR-92a 304396 LOC304396 guccgGCCCU--GU-UCA-CGUUAu ||||| || ||| ||||| gguugCGGGACCCACAGUCGCAAUc 2 17 342 366 [rn4:12:21651094-21651118:+] 0.5103 122 0 -18.64 -0.1418 MIMAT0000819 rno-miR-98 304396 LOC304396 uuGUUAUGUU-GAA-U-GAUGGAGu ||||:||: ||| | ||||||| gcCAAUGCAGCCUUCACCUACCUCa 2 21 1067 1091 [rn4:12:21658270-21658294:+] 0.5808 165 7 -23.22 -0.4095 MIMAT0000861 rno-miR-184 304396 LOC304396 ugggaauaGUCAAGAGGCAGGu |||| ||||||| cucaacugCAGU--UCCGUCCc 2 15 509 528 [rn4:12:21651351-21651370:+] 0.6843 147 7 -19.70 -0.5222 MIMAT0000877 rno-miR-204 304396 LOC304396 uccgUAUCCUACU----GUUUCCCUu ||: |:||: |||||||| gaagAUGUGGUGGCCUCCAAAGGGAg 2 19 716 741 [rn4:12:21657605-21657617,21657750-21657762:+] 0.6731 149 7 -19.87 -0.1213 MIMAT0000882 rno-miR-211 304396 LOC304396 ucCGUUUCCUACUGUUUCCCUu |::: || |||||||| auGUGGUGGCCUCCAAAGGGAg 2 21 720 741 [rn4:12:21657609-21657617,21657750-21657762:+] 0.6731 148 7 -17.72 -0.1213 MIMAT0000885 rno-miR-214 304396 LOC304396 gacGGACAGAC-ACGGACGACa || | | | | ||||||| ugcCCGGACAGCUUCCUGCUGg 2 19 554 575 [rn4:12:21651396-21651417:+] 0.6843 149 7 -17.71 -0.1236 MIMAT0000887 rno-miR-217 304396 LOC304396 uaGGUC--AGUCAAGGAC-UACG-UCAu |:|| |:| |||: | |||| ||| uuCUAGCUUUAUUUCUAGCAUGCUAGUg 2 23 96 123 [rn4:12:21650848-21650875:+] 0.5103 124 0 -15.84 -0.2031 MIMAT0000890 rno-miR-221 304396 LOC304396 cuuUGGGUCGUCUGUUAC-AUCGa |:|::| |||| ||| |||| uccAUCUGGAAGAC-AUGCUAGCc 2 21 1118 1140 [rn4:12:21658321-21658343:+] 0.5808 130 0 -17.45 -0.1498 MIMAT0003117 rno-miR-361 304396 LOC304396 caUGGGGACCUCUAAGACUAUu :|| :| | ||||||| cuGCCGUUUCUGCCUCUGAUAa 2 21 317 338 [rn4:12:21651069-21651090:+] 0.5103 144 7 -14.52 -0.1171 MIMAT0003123 rno-miR-377 304396 LOC304396 gguuuucaacggaaACACACUa ||||||| ccagaagcaaagggUGUGUGAg 2 9 625 646 [rn4:12:21651467-21651478,21657526-21657535:+] 0.6722 140 7 -18.23 -0.1305 MIMAT0003176 rno-miR-539 304396 LOC304396 ugugugGUUCCUAUUAAAG-AGg ::||| |||||| || ggugugUGAGGUGAAUUUCGUCu 2 17 637 659 [rn4:12:21657526-21657548:+] 0.6600 120 0 -9.96 -0.2566 MIMAT0003379 rno-miR-378 304396 LOC304396 ggaagaCUGAGGUUC-AGGUCa |||| |||| ||||| aaccacGACUACAAGUUCCAGg 2 16 470 491 [rn4:12:21651222-21651243:+] 0.7012 131 0 -20.33 -0.4130 MIMAT0005284 rno-miR-874 304396 LOC304396 agccagggagcCCGGUCCCGUc || ||||||| ccaaagggaguGGACAGGGCAc 2 12 732 753 [rn4:12:21657753-21657774:+] 0.6861 147 7 -20.74 -0.2147 MIMAT0005331 rno-miR-708 304396 LOC304396 gggucGAUCUAACAUUCGAGGAa | :| | | ||||||| aguucCAGGCUAGCCAGCUCCUc 2 19 483 505 [rn4:12:21651235-21651247,21651338-21651347:+] 0.6927 146 7 -21.93 -0.1080

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Lrwd1 RAID00001323 rno-miR-24-3p miRNA MIMAT0000794 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID00281489 rno-let-7c-5p miRNA MIMAT0000776 Lrwd1 mRNA 304396 Prediction 0.2202 Lrwd1 RAID00510749 rno-miR-342-3p miRNA MIMAT0000589 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID00562306 rno-miR-221-3p miRNA MIMAT0000890 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID00567328 rno-miR-214-3p miRNA MIMAT0000885 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID00888699 rno-miR-28-5p miRNA MIMAT0000800 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID00951511 rno-miR-9a-3p miRNA MIMAT0004708 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID01084475 rno-let-7f-5p miRNA MIMAT0000778 Lrwd1 mRNA 304396 Prediction 0.2202 Lrwd1 RAID01861438 rno-miR-217-5p miRNA MIMAT0000887 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID01997627 rno-let-7b-5p miRNA MIMAT0000775 Lrwd1 mRNA 304396 Prediction 0.2202 Lrwd1 RAID02051280 rno-miR-708-5p miRNA MIMAT0005331 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID02134232 rno-miR-211-5p miRNA MIMAT0000882 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID02157679 rno-miR-204-5p miRNA MIMAT0000877 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID02167097 rno-miR-329-3p miRNA MIMAT0000566 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID02261988 rno-miR-377-3p miRNA MIMAT0003123 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID02323871 rno-miR-92a-3p miRNA MIMAT0000816 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID02486323 rno-miR-361-5p miRNA MIMAT0003117 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID02847007 rno-let-7e-5p miRNA MIMAT0000777 Lrwd1 mRNA 304396 Prediction 0.2202 Lrwd1 RAID02904530 rno-miR-339-5p miRNA MIMAT0000583 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID03028349 rno-miR-184 miRNA MIMAT0000861 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID03092780 rno-miR-539-5p miRNA MIMAT0003176 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID03402272 rno-miR-378a-3p miRNA MIMAT0003379 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID03434316 rno-miR-98-5p miRNA MIMAT0000819 Lrwd1 mRNA 304396 Prediction 0.2202 Lrwd1 RAID03436145 rno-miR-874-3p miRNA MIMAT0005284 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID03739783 rno-let-7a-5p miRNA MIMAT0000774 Lrwd1 mRNA 304396 Prediction 0.2202 Lrwd1 RAID03814524 rno-let-7d-5p miRNA MIMAT0000562 Lrwd1 mRNA 304396 Prediction 0.1828 Lrwd1 RAID03930706 rno-let-7i-5p miRNA MIMAT0000779 Lrwd1 mRNA 304396 Prediction 0.2202