DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000594 rno-miR-345-5p 114553 Ncf1 cgUGACCUGA-UCCCCA-GUCGu |||| |:| |||||| |||| uaACUGUAUUAAGGGGUACAGCa 2 20 592 614 [rn4:12:23586310-23586332:+] 0.5550 138 0 -26.22 -0.3965 MIMAT0000603 rno-miR-20a* 114553 Ncf1 acauucacgagcaUUACGUca |||||| cauauaaaauaaaAAUGCAca 3 9 1249 1269 [rn4:12:23586967-23586987:+] 0.5475 120 0 -4.30 -0.1960 MIMAT0004705 rno-let-7b* 114553 Ncf1 cccuuccgucauccAACAUAUc ||||||| uccuaucccuacccUUGUAUAu 2 9 24 45 [rn4:12:23585742-23585763:+] 0.5467 140 7 -3.35 -0.1920 MIMAT0004705 rno-let-7b* 114553 Ncf1 cccuuccgucauccAACAUAUc ||||||| acccuuguauauauUUGUAUAu 2 9 34 55 [rn4:12:23585752-23585773:+] 0.5467 140 7 -3.69 -0.4637 MIMAT0004711 rno-miR-21* 114553 Ncf1 cugucggguagCUGACGACAAc |||||||||| aaggucaagagGACUGCUGUUa 2 12 768 789 [rn4:12:23586486-23586507:+] 0.5550 155 7 -19.92 -0.1991 MIMAT0004716 rno-miR-28* 114553 Ncf1 aggucCUCGAGUGUUAGAUCAc ||| ||| :||||||| aauucGAGAUCA-GAUCUAGUu 2 18 819 839 [rn4:12:23586537-23586557:+] 0.5550 159 7 -14.17 -0.1662 MIMAT0004721 rno-miR-30b-3p 114553 Ncf1 cugcaUUUGUAGGUGUAGGGUc |||| || ||||||| gucucAAACCACCCCAUCCCAc 2 18 855 876 [rn4:12:23586573-23586594:+] 0.5550 161 7 -16.87 -0.1184 MIMAT0004721 rno-miR-30b-3p 114553 Ncf1 cugcauuuGUA--GGU-GUAGGGUc ||| ||| ||||||| cuggcuucCAUUCCCAGCAUCCCAu 2 15 696 720 [rn4:12:23586414-23586438:+] 0.5550 148 7 -18.40 -0.1859 MIMAT0004739 rno-miR-204* 114553 Ncf1 uugcagggaAACGGAAGGGUCg || | ||||||| gggccuggcUUCCAUUCCCAGc 2 14 692 713 [rn4:12:23586410-23586431:+] 0.5550 149 7 -21.69 -0.1278 MIMAT0000893 rno-miR-290 114553 Ncf1 uuuuucaCGGGGGUAUCA-AACUc ||: || |||| |||| auuacccGCUGCCUUAGUCUUGAc 2 17 211 234 [rn4:12:23585929-23585952:+] 0.6594 124 0 -11.81 -0.5158 MIMAT0003175 rno-miR-543* 114553 Ncf1 ucuUCACGUGGCGCUUACAAa || | :|: ||||||| ccuAG-GGGCUCAGAAUGUUg 2 19 638 657 [rn4:12:23586356-23586375:+] 0.5550 144 7 -10.43 -0.1153 MIMAT0005315 rno-miR-434 114553 Ncf1 uccUCAGCUCACUACCAAGUUu || || ||: ||||||| uccAGAGGACUGG-GGUUCAAu 2 20 1131 1151 [rn4:12:23586849-23586869:+] 0.5475 153 7 -14.00 -0.1385 MIMAT0005329 rno-miR-674-5p 114553 Ncf1 auguggugaggGUAGAGUCACg :| ||||||| ggcuggaaagaUAGCUCAGUGg 2 12 1089 1110 [rn4:12:23586807-23586828:+] 0.5475 143 7 -12.20 -0.1064 MIMAT0005332 rno-miR-708* 114553 Ncf1 gaucUUCGAGUGUCAGAUCAAc :|| ||| | ||||||| auucGAGAUCAGA-UCUAGUUa 2 19 820 840 [rn4:12:23586538-23586558:+] 0.5550 156 7 -12.73 -0.4650 MIMAT0012822 rno-miR-202 114553 Ncf1 uuUCUUCAUAUACGU-AUCCUu ||::||| | ||| ||||| uaAGGGGUACA-GCACUAGGAa 2 20 601 621 [rn4:12:23586319-23586339:+] 0.5550 129 0 -18.20 -0.1610 MIMAT0012824 rno-miR-513 114553 Ncf1 uacUUUCUGUGGAAGAA-CACUu |||| ||::||||| |||| uguAAAG-CAUUUUCUUGGUGAu 2 20 1315 1336 [rn4:12:23587033-23587054:+] 0.5475 137 0 -17.18 -0.1452 MIMAT0012831 rno-miR-544 114553 Ncf1 cucgaaCGAUUUUUACGUCUUa |: ||: ||||||| accaagGUCAAGUUUGCAGAAg 2 17 233 254 [rn4:12:23585951-23585972:+] 0.6594 148 7 -11.24 -0.2857 MIMAT0012832 rno-miR-568 114553 Ncf1 cacACAU-AUG-UAAAUAUGUa | || ||| ||||||||| auuUAUAUUACGAUUUAUACAa 2 18 498 519 [rn4:12:23586216-23586237:+] 0.5550 159 7 -8.52 -1.1470 MIMAT0012837 rno-miR-632 114553 Ncf1 aggccguccuuUGUCUGUg ||||||| gacacccucucACAGACAu 2 9 1208 1226 [rn4:12:23586926-23586944:+] 0.5475 140 7 -11.34 -0.4229 MIMAT0000782 rno-miR-10a-5p 114553 Ncf1 guGUUUAAG--CCUAGAUGUCCCAu ||| ||| | ||: ||||||| uuCAAUUUCCAGCAUUCACAGGGUa 2 22 1146 1170 [rn4:12:23586864-23586888:+] 0.5475 164 7 -16.63 -0.2672 MIMAT0000785 rno-miR-16 114553 Ncf1 gcGGUUAUAAAUGCACGAC-GAu || : :|| :|||||| || ugCCUGAGUUCCUGUGCUGACUu 2 21 1498 1520 [rn4:12:23587216-23587238:+] 0.5475 120 0 -18.14 -0.2516 MIMAT0000790 rno-miR-21 114553 Ncf1 aguuGUAGUCAGACUAUU-CGAu |||:||| ||||| ||| caguCAUUAGU-GGAUAAUGCUu 2 19 918 939 [rn4:12:23586636-23586657:+] 0.5260 128 0 -16.70 -0.2280 MIMAT0000795 rno-miR-25 114553 Ncf1 aguCUGGCUCUG-UUCA-CGUUAc ||| | |: |||| ||||| aauGACAGCUAUGAAGUAGCAAUg 2 20 527 550 [rn4:12:23586245-23586268:+] 0.5550 122 0 -15.58 -0.5268 MIMAT0000811 rno-miR-32 114553 Ncf1 acGUUGAAUCAUUACA-CGUUAu ||:| || |:| || ||||| gaCAGC-UA-UGAAGUAGCAAUg 2 21 530 550 [rn4:12:23586248-23586268:+] 0.5550 120 0 -12.31 -0.5233 MIMAT0000812 rno-miR-33 114553 Ncf1 acGUUACGUUGAU-GUUACGUg ||| || || ||||||| ugCAAACAAAAUACCAAUGCAu 2 20 1230 1251 [rn4:12:23586948-23586969:+] 0.5475 154 7 -14.20 -0.7799 MIMAT0000812 rno-miR-33 114553 Ncf1 acGU-UACGUUGAUGUUACGUg || || ||: | |||||| ugCAUAUAAAAUAAAAAUGCAc 2 20 1247 1268 [rn4:12:23586965-23586986:+] 0.5475 126 6 -12.63 -0.1328 MIMAT0000862 rno-miR-185 114553 Ncf1 agucCUUGACGGAAAGAGAGGu |:|||| ||||||||| gacaGGACUGGGUUUCUCUCCa 2 19 121 142 [rn4:12:23585839-23585860:+] 0.6594 170 7 -31.02 -0.5332 MIMAT0000867 rno-miR-192 114553 Ncf1 ccgacAGUUAAGUAUCCAGUc ||| :||||||| agcauUCACAGGGUAGGUCAc 2 17 1156 1176 [rn4:12:23586874-23586894:+] 0.5475 144 7 -12.97 -0.1066 MIMAT0000870 rno-miR-195 114553 Ncf1 cgguuaUAAAGACACGAC-GAu :|| |||||||| || gccugaGUUCCUGUGCUGACUu 2 16 1499 1520 [rn4:12:23587217-23587238:+] 0.5475 127 0 -19.15 -0.2516 MIMAT0000878 rno-miR-205 114553 Ncf1 guCUGAGGCCACCUUACU-UCCu |:: ::| | |:|||| ||| cgGGUAUUGCUAGGAUGAGAGGa 2 21 143 165 [rn4:12:23585861-23585883:+] 0.6594 120 0 -16.87 -0.2448 MIMAT0001534 rno-miR-448 114553 Ncf1 uacccUGUAGGAUGUAUACGUu ||| | |:||||||| cucucACAGAC-AUAUAUGCAa 2 18 1214 1234 [rn4:12:23586932-23586952:+] 0.5475 151 7 -14.18 -1.0633 MIMAT0003118 rno-miR-215 114553 Ncf1 cagacAGUUUAGUAUCCAGUa ||| | :||||||| agcauUCACAGGGUAGGUCAc 2 17 1156 1176 [rn4:12:23586874-23586894:+] 0.5475 152 7 -12.84 -0.1055 MIMAT0003194 rno-miR-376c 114553 Ncf1 ugCAC-UUUAAAGGAGAUACAa ||| :| | ||||||| ccGUGCUGACUGGAUCUAUGUc 2 20 1005 1026 [rn4:12:23586723-23586744:+] 0.5368 142 7 -13.14 -0.1292 MIMAT0003199 rno-miR-381 114553 Ncf1 cucucGAACGGGAACAUAu | | ||||||||| cuaucCCUACCCUUGUAUa 2 15 26 44 [rn4:12:23585744-23585762:+] 0.5467 154 7 -16.62 -0.3512 MIMAT0003200 rno-miR-487b 114553 Ncf1 ucaccuacugggacAUGCUAa |||||| auagauauuuauauUACGAUu 2 8 492 512 [rn4:12:23586210-23586230:+] 0.5550 120 6 -8.81 -0.1155 MIMAT0005310 rno-miR-384-3p 114553 Ncf1 uaaCACUUGUUAAAGAUCCUUa | | |||: ||||||| aagGGGUACAG-CACUAGGAAg 2 20 602 622 [rn4:12:23586320-23586340:+] 0.5550 145 7 -12.98 -0.1695 MIMAT0005316 rno-miR-455 114553 Ncf1 gcUACAUCAGGUUUCCGUGUAu || | | ||| |||||| auAUAAAAUAAAAAUGCACAUu 2 21 1250 1271 [rn4:12:23586968-23586989:+] 0.5475 128 6 -7.57 -0.1319 MIMAT0005339 rno-miR-873 114553 Ncf1 uccucuGA-GUGUUCAAGGACg || | ::|||||||| ccugucCUGCCUGAGUUCCUGu 2 16 1491 1512 [rn4:12:23587209-23587230:+] 0.5475 150 7 -16.32 -0.2820 MIMAT0005339 rno-miR-873 114553 Ncf1 ucCUCUGAGUGUU-CAA-GGACg |:|:|||| || ||| |||| uaGGGGCUCAGAAUGUUGCCUGg 2 20 640 662 [rn4:12:23586358-23586380:+] 0.5550 134 0 -23.46 -0.1910

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G059279 Ncf1 Rattus norvegicus 114553

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ncf1 RAID00370933 rno-miR-487b-3p miRNA MIMAT0003200 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID00502093 rno-miR-10a-5p miRNA MIMAT0000782 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID00549527 rno-miR-185-5p miRNA MIMAT0000862 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID00602816 rno-let-7f-1-3p miRNA MIMAT0017089 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID01024849 rno-miR-384-3p miRNA MIMAT0005310 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID01044875 rno-let-7a-1-3p miRNA MIMAT0017085 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID01699129 rno-miR-455-5p miRNA MIMAT0005316 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID01708837 rno-miR-448-3p miRNA MIMAT0001534 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID01851856 rno-miR-16-5p miRNA MIMAT0000785 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID01982315 rno-miR-450b-3p miRNA MIMAT0035747 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID02139767 rno-miR-32-5p miRNA MIMAT0000811 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID02226813 rno-miR-205 miRNA MIMAT0000878 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID02291499 rno-miR-568 miRNA MIMAT0012832 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID02315463 rno-miR-381-3p miRNA MIMAT0003199 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID02494357 rno-miR-33-5p miRNA MIMAT0000812 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID02530527 rno-miR-21-5p miRNA MIMAT0000790 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID02595812 rno-miR-215 miRNA MIMAT0003118 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID02702910 rno-miR-666-3p miRNA MIMAT0017371 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID03068008 rno-miR-376c-3p miRNA MIMAT0003194 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID03152051 rno-miR-873-5p miRNA MIMAT0005339 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID03241864 rno-miR-25-3p miRNA MIMAT0000795 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID03338229 rno-let-7b-3p miRNA MIMAT0004705 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID03401101 rno-miR-98-3p miRNA MIMAT0017111 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID03419888 rno-let-7c-2-3p miRNA MIMAT0017088 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID03477910 rno-miR-3541 miRNA MIMAT0017795 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID03613751 rno-miR-3596d miRNA MIMAT0017823 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID03720981 rno-miR-192-5p miRNA MIMAT0000867 Ncf1 mRNA 114553 Prediction 0.1828 Ncf1 RAID03907639 rno-miR-195-5p miRNA MIMAT0000870 Ncf1 mRNA 114553 Prediction 0.1828