DNA & RNA Element - miRNAMap |
Gene Name | Mature miRNA | Target Start | Target End | miRNA 3-5 | Alignment | Target 5-3 |
Chaf1b; rCG_53062 | rno-miR-128a | 27 | 64 | -UUUUCUCUGG--------------CCAAGUGACACU- | |:|:|||:|| ||| |||| | CAGAGGAGGCCAAAGCUCGAAGGCUGGUGAUG-GUGAU |
Chaf1b; rCG_53062 | rno-miR-128b | 28 | 64 | CUUUCUCUGG--------------CCAAGUGACACU- | :|:|||:|| ||| |||| | AGAGGAGGCCAAAGCUCGAAGGCUGGUGAUG-GUGAU |
Chaf1b; rCG_53062 | rno-miR-133a | 8 | 41 | UGUCGACCA--------AC--UUCCCCUGGUU- | |:||||| || :||| |:|||| | UCGGCUGGGUAUCCAUGUGCAGAGGAGGCCAAA |
Chaf1b; rCG_53062 | rno-miR-133b | 9 | 41 | AUCGACCA--------AC--UUCCCCUGGUU- | :||||| || :||| |:|||| | CGGCUGGGUAUCCAUGUGCAGAGGAGGCCAAA |
Chaf1b; rCG_53062 | rno-miR-193 | 11 | 40 | -GACCCU--GAAACA-------UCCGGUCAA | ||||| | ||| |||||| | GCUGGGUAUCCAUGUGCAGAGGAGGCCAA-- |
Chaf1b; rCG_53062 | rno-miR-217 | 7 | 31 | UAGGUC-AGUCA-AGGACUACGUCAU | :|:| | :|| ||| :||||| | -CUCGGCUGGGUAUCCAUGUGCAGA- |
Chaf1b; rCG_53062 | rno-miR-224 | 67 | 94 | AUUUGCCUUG---GUGAUCACUGAAC- | :|:|||||: |||| |||| ||| | AGAGCGGAAUAAACACUCGUGAAUUGG |
Chaf1b; rCG_53062 | rno-miR-24 | 2 | 19 | GACAAGGACGACUUGACUCGGU | |||||| ::|||:|: | ----GCCUGCUCGGCUGGGUA- |
Chaf1b; rCG_53062 | rno-miR-25 | 7 | 31 | -AGUCUGGCUCU---GUUCACGUUAC | ||:| |:|:| || |||||: | CUCGG-CUGGGUAUCCAUGUGCAGA- |
Chaf1b; rCG_53062 | rno-miR-27a | 69 | 91 | -CGCCUUGAAUCGGUGA-CACUU- | ||||||: |||| ||||| | AGCGGAAUAAA--CACUCGUGAAU |
Chaf1b; rCG_53062 | rno-miR-27b | 69 | 91 | -CGUCUUGAAUCGGUGA-CACUU- | ||:|||: |||| ||||| | AGCGGAAUAAA--CACUCGUGAAU |
Chaf1b; rCG_53062 | rno-miR-29a | 47 | 63 | -UUGGCUAAAGUCUACCACGAU | ::|:|:| ||||||| | AGGCUGGU----GAUGGUGA-- |
Chaf1b; rCG_53062 | rno-miR-29b | 45 | 63 | -UUGUGACUAAAGUUUACCACGAU | || :|||:| :|||||| | GAAGGCUGGU----GAUGGUGA-- |
Chaf1b; rCG_53062 | rno-miR-32 | 8 | 31 | CGUUGAAUCAU---UACACGUUAU | |::|| :||| |||||||: | UCGGCUGGGUAUCCAUGUGCAGA- |
Chaf1b; rCG_53062 | rno-miR-328 | 8 | 40 | UGCCUUCCCG----------UCUCUCCCGGUC | ||| |||: ||||: ||||| | UCGGCUGGGUAUCCAUGUGCAGAGGAGGCCAA |
Chaf1b; rCG_53062 | rno-miR-337 | 13 | 55 | UUUCCGUAG-UAUA----UCCU---------------CGACUU | :||:||| ||:| |||| ||||: | -UGGGUAUCCAUGUGCAGAGGAGGCCAAAGCUCGAAGGCUGGU |
Chaf1b; rCG_53062 | rno-miR-339 | 5 | 35 | ACUCGAG--GACCU-------CCUGUC-CCU- | |||| ||||: | :||| ||| | --UGCUCGGCUGGGUAUCCAUGUGCAGAGGAG |
Chaf1b; rCG_53062 | rno-miR-343 | 11 | 37 | AGACCCGU--GUGC-C-UC-CCUCU- | |||||:| ||:| | || ||||: | GCUGGGUAUCCAUGUGCAGAGGAGGC |
Chaf1b; rCG_53062 | rno-miR-346 | 27 | 58 | -UCUCCGUCCG----UGAG--UCCG-UCUGU- | ||||| |||| :||| |||| :| | | CAGAGG-AGGCCAAAGCUCGAAGGCUGGUGAU |
Chaf1b; rCG_53062 | rno-miR-347 | 12 | 38 | -ACCCGCUGG-----GUCUCC-CUGU | ||||: || |||||| |:| | CUGGGUAUCCAUGUGCAGAGGAGGCC |
Chaf1b; rCG_53062 | rno-miR-363-3p | 8 | 31 | UGUCUACCUAUGG---CACGUUAA | |:| |||:||:| |||||: | UCGGCUGGGUAUCCAUGUGCAGA- |
Chaf1b; rCG_53062 | rno-miR-370 | 9 | 38 | -UUGGUCCA-AGGUGGG-GUCG--UCCG- | ::|::||| ||||: : ||| |||| | CGGCUGGGUAUCCAUGUGCAGAGGAGGCC |
Chaf1b; rCG_53062 | rno-miR-409-5p | 4 | 23 | GUUUCAACGAG----CCCAUUGGA | ||||| ||||| || | -----CUGCUCGGCUGGGUAUCCA |
Chaf1b; rCG_53062 | rno-miR-412 | 47 | 64 | UGCCGAUCACCUGGUCCACUUCA | ||||:||| ||||| | -AGGCUGGUGAU---GGUGAU-- |
Chaf1b; rCG_53062 | rno-miR-448 | 12 | 31 | UACCCUGUAGGAUGUAUACGUU- | |||| :|||| ||:||||: | CUGGG-UAUCC---AUGUGCAGA |
Chaf1b; rCG_53062 | rno-miR-501 | 16 | 35 | AAAGUGGGUCCCUGUUUCCUAA | :|:||| | :||:|||| | --GUAUCCAUGUGCAGAGGAG- |
Chaf1b; rCG_53062 | rno-miR-9 | 8 | 34 | AGUAUGUCGAUCUA------UUGGUUUCU- | |:|||:|:| : ||:||: | ----UCGGCUGGGUAUCCAUGUGCAGAGGA |
Chaf1b; rCG_53062 | rno-miR-92 | 9 | 31 | GUCCGGCCCU---GUUCACGUUAU | |||:||| || |||||: | -CGGCUGGGUAUCCAUGUGCAGA- |
Chaf1b; rCG_53062 | rno-miR-128a | 62 | 88 | uuuucUCUGGCC--A--AGUGA-CACU | ||| ||| | |||| |||| | atattAGAGCGGAATAAACACTCGTGA |
Chaf1b; rCG_53062 | rno-miR-128b | 62 | 88 | cuuucUCUGGCC--A--AGUGA-CACU | ||| ||| | |||| |||| | atattAGAGCGGAATAAACACTCGTGA |
Chaf1b; rCG_53062 | rno-miR-132 | 33 | 55 | gCUGGUACCGA-CAUCUGACAAu | |:||| ||| | ||:||| | | aGGCCAAAGCTCGAAGGCTGGTg |
Chaf1b; rCG_53062 | rno-miR-146 | 80 | 99 | uUGGGUACCUUAAGUCAAGAGU | ||:|:| ||||| :|||| || | cACTCGT-GAATT-GGTTCACA |
Chaf1b; rCG_53062 | rno-miR-193 | 12 | 41 | GACCC-U-GAAACA-------UCCGGUcaa | ||||| | | ||| |||||| | CTGGGTATCCATGTGCAGAGGAGGCCAaag |
Chaf1b; rCG_53062 | rno-miR-217 | 7 | 31 | uAGGUCAGUCA-AGGACUACGUCau | || : | :|| ||| :||||| | cTCGGCTGGGTATCCATGTGCAGag |
Chaf1b; rCG_53062 | rno-miR-24 | 1 | 22 | gacaaGGACGACUUGACUC---GGU | |||||| ::|||:| ||| | ---ggCCTGCTCGGCTGGGTATCCA |
Chaf1b; rCG_53062 | rno-miR-25 | 8 | 31 | AGUCUGGCUC-U--GUUCACGUuac | || |:|:|:| | || ||||| | TC-GGCTGGGTATCCATGTGCAgag |
Chaf1b; rCG_53062 | rno-miR-27a | 70 | 89 | CGCCUUGAAUCGGUGA-CACUU | |||||| || |||| ||||| | GCGGAA--TAAACACTCGTGAA |
Chaf1b; rCG_53062 | rno-miR-27b | 70 | 89 | CGUCUUGAAUCGGUGA-CACUU | ||:||| || |||| ||||| | GCGGAA--TAAACACTCGTGAA |
Chaf1b; rCG_53062 | rno-miR-29a | 48 | 64 | uuGGCUAAAGUCUACCACGAU | |:|:| ||||||| || | ggCTGGT----GATGGTGATA |
Chaf1b; rCG_53062 | rno-miR-29b | 46 | 64 | UUGUGACUAAAGUUUACCACGAU | || :|||:| :|||||| || | AAGGCTGGT----GATGGTGATA |
Chaf1b; rCG_53062 | rno-miR-32 | 8 | 31 | cGUUGAAUCAU---UACACGUuau | |::|| :||| ||||||| | tCGGCTGGGTATCCATGTGCAgag |
Chaf1b; rCG_53062 | rno-miR-328 | 18 | 39 | ugccUUCCCGUCUCUCCCGGUc | | | ||||||: ||||| | atccATGTGCAGAGGAGGCCAa |
Chaf1b; rCG_53062 | rno-miR-337 | 45 | 75 | uUUCCG--------UAGUAUAUCCUCGACUU | ||||| :| |||| |||| ||| | gAAGGCTGGTGATGGTGATATTAGAGCGGAA |
Chaf1b; rCG_53062 | rno-miR-339 | 1 | 17 | acucgaGGACCUCCUGUCCCu | |||| |:| ||| | ----ggCCTGCTCGGCTGGGt |
Chaf1b; rCG_53062 | rno-miR-346 | 7 | 32 | ucuCCG-UCCGUGAGU-C-CGUCUgu | ||| :||:|: || | ||||| | ctcGGCTGGGTATCCATGTGCAGAgg |
Chaf1b; rCG_53062 | rno-miR-347 | 13 | 37 | ACCCGCUGG-----GUCUCC-CUGu | ||||: || |||||| |:| | TGGGTATCCATGTGCAGAGGAGGCc |
Chaf1b; rCG_53062 | rno-miR-363-3p | 8 | 31 | uGUCUACCUAU-GG--CACGUuaa | |:| |||:|| || ||||| | tCGGCTGGGTATCCATGTGCAgag |
Chaf1b; rCG_53062 | rno-miR-370 | 1 | 16 | uugguCCAAGGUGGGGUCGUCCg | || || |:|:|| || | -----GG--CCTGCTCGGCTGGg |
Chaf1b; rCG_53062 | rno-miR-409-5p | 1 | 22 | guuucaACGAG----CCCAUUGGa | ||||| ||||| || | --ggccTGCTCGGCTGGGTATCCa |
Chaf1b; rCG_53062 | rno-miR-412 | 38 | 59 | ugcCGAUCACCUGGUCCACUUCa | ||| | |:|: ||||| | | aaaGCTCGAAGGCT-GGTGATGg |
Chaf1b; rCG_53062 | rno-miR-501 | 14 | 35 | aaagUGGGUCCCUGUUUCCUaa | |:||| | :||:|||| | gggtATCCATGTGCAGAGGAgg |
Chaf1b; rCG_53062 | rno-miR-9 | 22 | 42 | aguAUGUCGAUCUAUUGGUUUCu | |:||| ||: ::|||||| | atgTGCAG--AGGAGGCCAAAGc |
Chaf1b; rCG_53062 | rno-miR-92 | 8 | 31 | guCCGGCCC-U--GUUCACGUuau | |||:||| | || ||||| | tcGGCTGGGTATCCATGTGCAgag |