DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005328 rno-miR-673 288242 Chaf1b gaGGUUCCUGGCCU-CGA-CACUc |||| | :|| | ||| |||| ggCCAAAGCUCGAAGGCUGGUGAu 2 21 34 57 [rn4:11:34130863-34130886:+] 0.5312 127 0 -17.45 -0.1422 MIMAT0000799 rno-miR-27a 288242 Chaf1b cgCCUUGAAUCGGUGA-CACUu |||| || |||| |||| gcGGAA--UAAACACUCGUGAa 2 20 70 89 [rn4:11:34130899-34130918:+] 0.5312 120 0 -20.81 -1.0547

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G116261 Chaf1b Rattus norvegicus 288242

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Chaf1b; rCG_53062 rno-miR-128a 27 64 -UUUUCUCUGG--------------CCAAGUGACACU- |:|:|||:|| ||| |||| CAGAGGAGGCCAAAGCUCGAAGGCUGGUGAUG-GUGAU Chaf1b; rCG_53062 rno-miR-128b 28 64 CUUUCUCUGG--------------CCAAGUGACACU- :|:|||:|| ||| |||| AGAGGAGGCCAAAGCUCGAAGGCUGGUGAUG-GUGAU Chaf1b; rCG_53062 rno-miR-133a 8 41 UGUCGACCA--------AC--UUCCCCUGGUU- |:||||| || :||| |:|||| UCGGCUGGGUAUCCAUGUGCAGAGGAGGCCAAA Chaf1b; rCG_53062 rno-miR-133b 9 41 AUCGACCA--------AC--UUCCCCUGGUU- :||||| || :||| |:|||| CGGCUGGGUAUCCAUGUGCAGAGGAGGCCAAA Chaf1b; rCG_53062 rno-miR-193 11 40 -GACCCU--GAAACA-------UCCGGUCAA ||||| | ||| |||||| GCUGGGUAUCCAUGUGCAGAGGAGGCCAA-- Chaf1b; rCG_53062 rno-miR-217 7 31 UAGGUC-AGUCA-AGGACUACGUCAU :|:| | :|| ||| :||||| -CUCGGCUGGGUAUCCAUGUGCAGA- Chaf1b; rCG_53062 rno-miR-224 67 94 AUUUGCCUUG---GUGAUCACUGAAC- :|:|||||: |||| |||| ||| AGAGCGGAAUAAACACUCGUGAAUUGG Chaf1b; rCG_53062 rno-miR-24 2 19 GACAAGGACGACUUGACUCGGU |||||| ::|||:|: ----GCCUGCUCGGCUGGGUA- Chaf1b; rCG_53062 rno-miR-25 7 31 -AGUCUGGCUCU---GUUCACGUUAC ||:| |:|:| || |||||: CUCGG-CUGGGUAUCCAUGUGCAGA- Chaf1b; rCG_53062 rno-miR-27a 69 91 -CGCCUUGAAUCGGUGA-CACUU- ||||||: |||| ||||| AGCGGAAUAAA--CACUCGUGAAU Chaf1b; rCG_53062 rno-miR-27b 69 91 -CGUCUUGAAUCGGUGA-CACUU- ||:|||: |||| ||||| AGCGGAAUAAA--CACUCGUGAAU Chaf1b; rCG_53062 rno-miR-29a 47 63 -UUGGCUAAAGUCUACCACGAU ::|:|:| ||||||| AGGCUGGU----GAUGGUGA-- Chaf1b; rCG_53062 rno-miR-29b 45 63 -UUGUGACUAAAGUUUACCACGAU || :|||:| :|||||| GAAGGCUGGU----GAUGGUGA-- Chaf1b; rCG_53062 rno-miR-32 8 31 CGUUGAAUCAU---UACACGUUAU |::|| :||| |||||||: UCGGCUGGGUAUCCAUGUGCAGA- Chaf1b; rCG_53062 rno-miR-328 8 40 UGCCUUCCCG----------UCUCUCCCGGUC ||| |||: ||||: ||||| UCGGCUGGGUAUCCAUGUGCAGAGGAGGCCAA Chaf1b; rCG_53062 rno-miR-337 13 55 UUUCCGUAG-UAUA----UCCU---------------CGACUU :||:||| ||:| |||| ||||: -UGGGUAUCCAUGUGCAGAGGAGGCCAAAGCUCGAAGGCUGGU Chaf1b; rCG_53062 rno-miR-339 5 35 ACUCGAG--GACCU-------CCUGUC-CCU- |||| ||||: | :||| ||| --UGCUCGGCUGGGUAUCCAUGUGCAGAGGAG Chaf1b; rCG_53062 rno-miR-343 11 37 AGACCCGU--GUGC-C-UC-CCUCU- |||||:| ||:| | || ||||: GCUGGGUAUCCAUGUGCAGAGGAGGC Chaf1b; rCG_53062 rno-miR-346 27 58 -UCUCCGUCCG----UGAG--UCCG-UCUGU- ||||| |||| :||| |||| :| | CAGAGG-AGGCCAAAGCUCGAAGGCUGGUGAU Chaf1b; rCG_53062 rno-miR-347 12 38 -ACCCGCUGG-----GUCUCC-CUGU ||||: || |||||| |:| CUGGGUAUCCAUGUGCAGAGGAGGCC Chaf1b; rCG_53062 rno-miR-363-3p 8 31 UGUCUACCUAUGG---CACGUUAA |:| |||:||:| |||||: UCGGCUGGGUAUCCAUGUGCAGA- Chaf1b; rCG_53062 rno-miR-370 9 38 -UUGGUCCA-AGGUGGG-GUCG--UCCG- ::|::||| ||||: : ||| |||| CGGCUGGGUAUCCAUGUGCAGAGGAGGCC Chaf1b; rCG_53062 rno-miR-409-5p 4 23 GUUUCAACGAG----CCCAUUGGA ||||| ||||| || -----CUGCUCGGCUGGGUAUCCA Chaf1b; rCG_53062 rno-miR-412 47 64 UGCCGAUCACCUGGUCCACUUCA ||||:||| ||||| -AGGCUGGUGAU---GGUGAU-- Chaf1b; rCG_53062 rno-miR-448 12 31 UACCCUGUAGGAUGUAUACGUU- |||| :|||| ||:||||: CUGGG-UAUCC---AUGUGCAGA Chaf1b; rCG_53062 rno-miR-501 16 35 AAAGUGGGUCCCUGUUUCCUAA :|:||| | :||:|||| --GUAUCCAUGUGCAGAGGAG- Chaf1b; rCG_53062 rno-miR-9 8 34 AGUAUGUCGAUCUA------UUGGUUUCU- |:|||:|:| : ||:||: ----UCGGCUGGGUAUCCAUGUGCAGAGGA Chaf1b; rCG_53062 rno-miR-92 9 31 GUCCGGCCCU---GUUCACGUUAU |||:||| || |||||: -CGGCUGGGUAUCCAUGUGCAGA- Chaf1b; rCG_53062 rno-miR-128a 62 88 uuuucUCUGGCC--A--AGUGA-CACU ||| ||| | |||| |||| atattAGAGCGGAATAAACACTCGTGA Chaf1b; rCG_53062 rno-miR-128b 62 88 cuuucUCUGGCC--A--AGUGA-CACU ||| ||| | |||| |||| atattAGAGCGGAATAAACACTCGTGA Chaf1b; rCG_53062 rno-miR-132 33 55 gCUGGUACCGA-CAUCUGACAAu |:||| ||| | ||:||| | aGGCCAAAGCTCGAAGGCTGGTg Chaf1b; rCG_53062 rno-miR-146 80 99 uUGGGUACCUUAAGUCAAGAGU ||:|:| ||||| :|||| || cACTCGT-GAATT-GGTTCACA Chaf1b; rCG_53062 rno-miR-193 12 41 GACCC-U-GAAACA-------UCCGGUcaa ||||| | | ||| |||||| CTGGGTATCCATGTGCAGAGGAGGCCAaag Chaf1b; rCG_53062 rno-miR-217 7 31 uAGGUCAGUCA-AGGACUACGUCau || : | :|| ||| :||||| cTCGGCTGGGTATCCATGTGCAGag Chaf1b; rCG_53062 rno-miR-24 1 22 gacaaGGACGACUUGACUC---GGU |||||| ::|||:| ||| ---ggCCTGCTCGGCTGGGTATCCA Chaf1b; rCG_53062 rno-miR-25 8 31 AGUCUGGCUC-U--GUUCACGUuac || |:|:|:| | || ||||| TC-GGCTGGGTATCCATGTGCAgag Chaf1b; rCG_53062 rno-miR-27a 70 89 CGCCUUGAAUCGGUGA-CACUU |||||| || |||| ||||| GCGGAA--TAAACACTCGTGAA Chaf1b; rCG_53062 rno-miR-27b 70 89 CGUCUUGAAUCGGUGA-CACUU ||:||| || |||| ||||| GCGGAA--TAAACACTCGTGAA Chaf1b; rCG_53062 rno-miR-29a 48 64 uuGGCUAAAGUCUACCACGAU |:|:| ||||||| || ggCTGGT----GATGGTGATA Chaf1b; rCG_53062 rno-miR-29b 46 64 UUGUGACUAAAGUUUACCACGAU || :|||:| :|||||| || AAGGCTGGT----GATGGTGATA Chaf1b; rCG_53062 rno-miR-32 8 31 cGUUGAAUCAU---UACACGUuau |::|| :||| ||||||| tCGGCTGGGTATCCATGTGCAgag Chaf1b; rCG_53062 rno-miR-328 18 39 ugccUUCCCGUCUCUCCCGGUc | | ||||||: ||||| atccATGTGCAGAGGAGGCCAa Chaf1b; rCG_53062 rno-miR-337 45 75 uUUCCG--------UAGUAUAUCCUCGACUU ||||| :| |||| |||| ||| gAAGGCTGGTGATGGTGATATTAGAGCGGAA Chaf1b; rCG_53062 rno-miR-339 1 17 acucgaGGACCUCCUGUCCCu |||| |:| ||| ----ggCCTGCTCGGCTGGGt Chaf1b; rCG_53062 rno-miR-346 7 32 ucuCCG-UCCGUGAGU-C-CGUCUgu ||| :||:|: || | ||||| ctcGGCTGGGTATCCATGTGCAGAgg Chaf1b; rCG_53062 rno-miR-347 13 37 ACCCGCUGG-----GUCUCC-CUGu ||||: || |||||| |:| TGGGTATCCATGTGCAGAGGAGGCc Chaf1b; rCG_53062 rno-miR-363-3p 8 31 uGUCUACCUAU-GG--CACGUuaa |:| |||:|| || ||||| tCGGCTGGGTATCCATGTGCAgag Chaf1b; rCG_53062 rno-miR-370 1 16 uugguCCAAGGUGGGGUCGUCCg || || |:|:|| || -----GG--CCTGCTCGGCTGGg Chaf1b; rCG_53062 rno-miR-409-5p 1 22 guuucaACGAG----CCCAUUGGa ||||| ||||| || --ggccTGCTCGGCTGGGTATCCa Chaf1b; rCG_53062 rno-miR-412 38 59 ugcCGAUCACCUGGUCCACUUCa ||| | |:|: ||||| | aaaGCTCGAAGGCT-GGTGATGg Chaf1b; rCG_53062 rno-miR-501 14 35 aaagUGGGUCCCUGUUUCCUaa |:||| | :||:|||| gggtATCCATGTGCAGAGGAgg Chaf1b; rCG_53062 rno-miR-9 22 42 aguAUGUCGAUCUAUUGGUUUCu |:||| ||: ::|||||| atgTGCAG--AGGAGGCCAAAGc Chaf1b; rCG_53062 rno-miR-92 8 31 guCCGGCCC-U--GUUCACGUuau |||:||| | || ||||| tcGGCTGGGTATCCATGTGCAgag

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Chaf1b RAID01253502 rno-miR-27a-3p miRNA MIMAT0000799 Chaf1b mRNA 288242 Prediction 0.1828